AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012982.t1 MTR_3g101670 98.502 267 4 0 1 267 1 267 0.0 536
MS.gene012982.t1 MTR_3g435460 50.476 210 96 4 57 266 52 253 8.15e-66 206
MS.gene012982.t1 MTR_8g023790 49.763 211 101 4 51 259 55 262 1.08e-64 203
MS.gene012982.t1 MTR_5g098785 46.809 235 101 9 45 262 47 274 6.96e-60 191
MS.gene012982.t1 MTR_3g435460 50.259 193 88 4 74 266 8 192 3.58e-59 186
MS.gene012982.t1 MTR_5g098780 45.188 239 110 8 41 262 38 272 6.09e-59 189
MS.gene012982.t1 MTR_2g042720 47.847 209 105 3 57 264 61 266 9.40e-56 180
MS.gene012982.t1 MTR_2g008610 44.724 199 83 6 58 235 57 249 1.32e-40 141
MS.gene012982.t1 MTR_6g033320 36.752 234 113 7 37 262 32 238 2.44e-40 140
MS.gene012982.t1 MTR_1g026550 39.256 242 106 7 49 264 103 329 6.13e-40 141
MS.gene012982.t1 MTR_5g097280 41.667 192 98 4 68 253 66 249 1.10e-36 131
MS.gene012982.t1 MTR_4g094605 40.722 194 101 5 66 253 65 250 5.54e-36 129
MS.gene012982.t1 MTR_6g011880 39.409 203 91 6 66 253 64 249 2.24e-35 127
MS.gene012982.t1 MTR_6g011870 39.409 203 91 6 66 253 64 249 2.49e-35 127
MS.gene012982.t1 MTR_6g011890 39.409 203 91 6 66 253 64 249 4.19e-35 127
MS.gene012982.t1 MTR_4g015570 33.333 264 98 5 55 265 51 289 1.61e-34 126
MS.gene012982.t1 MTR_6g012080 38.424 203 93 6 66 253 64 249 1.65e-34 125
MS.gene012982.t1 MTR_6g012110 38.424 203 93 6 66 253 64 249 2.54e-34 125
MS.gene012982.t1 MTR_6g060175 37.383 214 96 7 68 265 91 282 3.79e-34 125
MS.gene012982.t1 MTR_2g081090 38.119 202 93 6 68 253 36 221 1.96e-31 116
MS.gene012982.t1 MTR_2g081090 37.624 202 94 5 68 253 63 248 2.62e-31 117
MS.gene012982.t1 MTR_5g098770 60.465 86 33 1 178 262 6 91 2.85e-29 106
MS.gene012982.t1 MTR_6g060175 35.047 214 91 8 68 265 91 272 7.73e-28 108
MS.gene012982.t1 MTR_6g043600 35.263 190 97 5 66 253 48 213 1.55e-26 103
MS.gene012982.t1 MTR_3g070340 30.303 231 95 4 60 243 59 270 3.16e-22 93.2
MS.gene012982.t1 MTR_2g436960 56.000 75 28 2 189 263 30 99 3.50e-18 78.2
MS.gene012982.t1 MTR_1g026550 41.237 97 52 2 49 140 103 199 1.05e-14 72.0
MS.gene012982.t1 MTR_0003s0060 47.368 76 35 2 191 266 25 95 7.44e-14 66.2
MS.gene012982.t1 MTR_6g074140 37.500 104 53 3 161 263 9 101 3.59e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012982.t1 AT1G45474 77.826 230 44 2 39 267 33 256 6.42e-130 369
MS.gene012982.t1 AT1G45474 77.826 230 44 2 39 267 33 256 6.42e-130 369
MS.gene012982.t1 AT3G47470 44.000 250 124 5 21 262 9 250 3.65e-63 199
MS.gene012982.t1 AT3G61470 48.131 214 107 3 50 262 44 254 4.24e-63 199
MS.gene012982.t1 AT1G61520 45.339 236 104 9 44 262 43 270 1.44e-57 185
MS.gene012982.t1 AT1G61520 45.339 236 104 9 44 262 43 270 1.44e-57 185
MS.gene012982.t1 AT1G19150 44.976 209 111 3 57 264 64 269 3.34e-55 179
MS.gene012982.t1 AT1G61520 46.602 206 89 8 74 262 14 215 1.20e-51 168
MS.gene012982.t1 AT1G15820 44.976 209 80 8 52 235 48 246 1.25e-41 144
MS.gene012982.t1 AT3G54890 39.806 206 96 6 61 258 48 233 1.70e-38 135
MS.gene012982.t1 AT1G76570 37.607 234 106 7 56 264 109 327 1.64e-37 135
MS.gene012982.t1 AT2G05100 35.686 255 134 7 21 253 3 249 1.06e-36 131
MS.gene012982.t1 AT2G05070 35.686 255 134 7 21 253 3 249 1.69e-36 130
MS.gene012982.t1 AT2G34430 41.237 194 101 4 66 253 64 250 2.43e-36 130
MS.gene012982.t1 AT3G27690 35.985 264 143 7 2 253 1 250 2.59e-36 130
MS.gene012982.t1 AT2G34420 41.237 194 101 4 66 253 63 249 2.93e-36 130
MS.gene012982.t1 AT3G27690 35.985 264 143 7 2 253 33 282 4.80e-36 130
MS.gene012982.t1 AT4G10340 37.129 202 117 4 68 267 82 275 1.39e-35 129
MS.gene012982.t1 AT1G29930 41.237 194 101 4 66 253 65 251 2.31e-35 127
MS.gene012982.t1 AT1G29920 41.237 194 101 4 66 253 65 251 2.46e-35 127
MS.gene012982.t1 AT1G29910 41.237 194 101 4 66 253 65 251 2.46e-35 127
MS.gene012982.t1 AT3G08940 32.963 270 103 6 49 265 43 287 9.72e-35 126
MS.gene012982.t1 AT5G01530 33.206 262 97 5 57 265 54 290 2.01e-33 123
MS.gene012982.t1 AT5G54270 37.255 204 92 5 68 253 64 249 2.91e-32 119
MS.gene012982.t1 AT2G05100 33.086 269 149 8 21 266 3 263 4.93e-30 115
MS.gene012982.t1 AT3G54890 37.811 201 73 6 61 258 48 199 1.70e-29 110
MS.gene012982.t1 AT3G54890 37.870 169 78 5 61 222 48 196 1.70e-25 100
MS.gene012982.t1 AT2G40100 30.041 243 91 7 57 246 55 271 5.92e-20 87.0
MS.gene012982.t1 AT3G54890 61.667 60 23 0 61 120 48 107 2.28e-18 80.5
MS.gene012982.t1 AT5G28450 43.434 99 53 2 162 259 71 167 6.29e-16 73.9

Find 76 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTCTGCCTGGAGATTT+TGG 0.083031 3.2:-84650436 MS.gene012982:intron
GCTAAAGAGGGTTCCTTCTT+TGG 0.210992 3.2:-84649716 MS.gene012982:CDS
ACATACCACTTTAAGCTTTC+AGG 0.257681 3.2:+84650385 None:intergenic
CTTCGCGTCGCAGGAGTTAA+TGG 0.271659 3.2:-84649979 MS.gene012982:CDS
CTTTGCAATGCTTGGAGTCT+TGG 0.296257 3.2:-84650338 MS.gene012982:CDS
CGTTGTTCAACTACTCTTGA+TGG 0.331931 3.2:-84649893 MS.gene012982:CDS
TGGCTCAGGCCTGCTGCTGC+AGG 0.332089 3.2:-84650657 MS.gene012982:CDS
GAGTTAATGGCATACCAATT+TGG 0.351396 3.2:-84649966 MS.gene012982:CDS
TTAAAGAATGTTGCTGGAAA+TGG 0.353609 3.2:+84650724 None:intergenic
AGGCCTGCTGCTGCAGGAAC+GGG 0.357983 3.2:-84650651 MS.gene012982:CDS
CATTCTCGCTTTGCAATGCT+TGG 0.365225 3.2:-84650346 MS.gene012982:CDS
CCCTCTTTAGCTTGAGATCC+AGG 0.372198 3.2:+84649728 None:intergenic
GCACCAGCTTCAAACCAAAT+TGG 0.375590 3.2:+84649952 None:intergenic
TTTGCAATGCTTGGAGTCTT+GGG 0.379571 3.2:-84650337 MS.gene012982:CDS
CAGGCCTGCTGCTGCAGGAA+CGG 0.383245 3.2:-84650652 MS.gene012982:CDS
GGGTTCCTTCTTTGGATTGG+AGG 0.390165 3.2:-84649708 MS.gene012982:CDS
ACAGGTATGCTGAAACAAAA+AGG 0.395693 3.2:-84649769 MS.gene012982:intron
GGATTGGAGGCTTCACTTGG+AGG 0.408465 3.2:-84649695 MS.gene012982:CDS
CAGTGGTGTCCTGCTGTTGA+AGG 0.408562 3.2:+84650678 None:intergenic
TTAATCAACAGCAATGTCAT+TGG 0.423067 3.2:-84650705 MS.gene012982:CDS
AGAGGGTTCCTTCTTTGGAT+TGG 0.425551 3.2:-84649711 MS.gene012982:CDS
TTTGGATTGGAGGCTTCACT+TGG 0.427397 3.2:-84649698 MS.gene012982:CDS
CAGCAGCAGGCCTGAGCCAG+TGG 0.431308 3.2:+84650661 None:intergenic
TGTTGATTAAAGAATGTTGC+TGG 0.432156 3.2:+84650718 None:intergenic
CTTGCAATGGTAGCAATACT+TGG 0.449516 3.2:-84649353 MS.gene012982:CDS
TCACTTGGAGGCTTAGAGCC+AGG 0.454641 3.2:-84649683 MS.gene012982:CDS
GGTCCTCTGCTAAATCCTCT+TGG 0.466721 3.2:-84649524 MS.gene012982:CDS
ACAGCGACCCACATGGCTCC+CGG 0.470053 3.2:-84650589 MS.gene012982:CDS
CAGCAGGACACCACTGGCTC+AGG 0.472502 3.2:-84650671 MS.gene012982:CDS
GTTGTTCAACTACTCTTGAT+GGG 0.474147 3.2:-84649892 MS.gene012982:CDS
ACATTAAAAGTGCTCGTGAA+TGG 0.476630 3.2:-84649490 MS.gene012982:CDS
ACGTTCCATCAAGATAGGTC+GGG 0.483613 3.2:+84650556 None:intergenic
ACTCCCGTTCCTGCAGCAGC+AGG 0.483851 3.2:+84650648 None:intergenic
TGCTCCACAAGGTTATCAAT+TGG 0.488850 3.2:+84649296 None:intergenic
GGGTTCGACCCACTTGGACT+TGG 0.499119 3.2:-84650415 MS.gene012982:CDS
TCCTGGATCTCAAGCTAAAG+AGG 0.502469 3.2:-84649729 MS.gene012982:CDS
GTGGTATGTGCAAGCAGAGT+TGG 0.513095 3.2:-84650371 MS.gene012982:CDS
ATCAAGTCCCGGGAGCCATG+TGG 0.514514 3.2:+84650581 None:intergenic
TTTCAACAAATAGGTACCCT+GGG 0.517399 3.2:-84649547 MS.gene012982:intron
ATGCAGCTACTTCGCGTCGC+AGG 0.521060 3.2:-84649988 MS.gene012982:intron
CACTTGGAGGCTTAGAGCCA+GGG 0.521376 3.2:-84649682 MS.gene012982:intron
GGCTTACGTTCCATCAAGAT+AGG 0.532109 3.2:+84650551 None:intergenic
CAGCGACCCACATGGCTCCC+GGG 0.535164 3.2:-84650588 MS.gene012982:CDS
TCAAGTCCCGGGAGCCATGT+GGG 0.535885 3.2:+84650582 None:intergenic
ACTAAGAACTAGAACTTGCA+AGG 0.536025 3.2:+84649237 None:intergenic
TACGTTCCATCAAGATAGGT+CGG 0.542041 3.2:+84650555 None:intergenic
ATACCAATTTGGTTTGAAGC+TGG 0.542713 3.2:-84649955 MS.gene012982:CDS
GGGTCGAACCCAAAATCTCC+AGG 0.547605 3.2:+84650427 None:intergenic
CGTTCCATCAAGATAGGTCG+GGG 0.549545 3.2:+84650557 None:intergenic
AAGCTTAAAGAGATCAAGAA+TGG 0.555296 3.2:-84649467 MS.gene012982:intron
CTTCAACAGCAGGACACCAC+TGG 0.557036 3.2:-84650677 MS.gene012982:CDS
TGAAGCCTCCAATCCAAAGA+AGG 0.557622 3.2:+84649703 None:intergenic
GTTTCAACAAATAGGTACCC+TGG 0.560016 3.2:-84649548 MS.gene012982:intron
TGGAGCATCTCTCAAATCCA+TGG 0.566001 3.2:-84649280 MS.gene012982:CDS
TGTTACAGGGCGACTTGCAA+TGG 0.566623 3.2:-84649366 MS.gene012982:intron
ATTGGTAAACCTTCAACAGC+AGG 0.584446 3.2:-84650687 MS.gene012982:CDS
CAGCACAACAGCGACCCACA+TGG 0.585644 3.2:-84650596 MS.gene012982:CDS
CCTGGATCTCAAGCTAAAGA+GGG 0.589518 3.2:-84649728 MS.gene012982:CDS
CGACCCACTTGGACTTGGAG+AGG 0.600286 3.2:-84650410 MS.gene012982:CDS
CAAGCTTCAGTGACTCATGT+TGG 0.608285 3.2:-84649320 MS.gene012982:CDS
AAATACGAGTTTGCCAACAC+AGG 0.611621 3.2:-84649925 MS.gene012982:CDS
AGGATCCTGAAAGCTTAAAG+TGG 0.613738 3.2:-84650390 MS.gene012982:CDS
TTGTTCAACTACTCTTGATG+GGG 0.618405 3.2:-84649891 MS.gene012982:intron
AATACGAGTTTGCCAACACA+GGG 0.621022 3.2:-84649924 MS.gene012982:CDS
AACGACGAGTGTCCCTGTGT+TGG 0.634037 3.2:+84649912 None:intergenic
CTAAGAACTAGAACTTGCAA+GGG 0.646168 3.2:+84649238 None:intergenic
GCACAAATTTGTTTATAACG+TGG 0.647469 3.2:+84650621 None:intergenic
ATGTCTTTAGCTAGGCCAAG+AGG 0.649507 3.2:+84649509 None:intergenic
GGATCCTCTCCAAGTCCAAG+TGG 0.657850 3.2:+84650406 None:intergenic
GATTTGAGAGATGCTCCACA+AGG 0.672076 3.2:+84649285 None:intergenic
TGGACCAATTGATAACCTTG+TGG 0.673898 3.2:-84649300 MS.gene012982:CDS
GATCCTCTCCAAGTCCAAGT+GGG 0.674722 3.2:+84650407 None:intergenic
AGGCCAAGAGGATTTAGCAG+AGG 0.679125 3.2:+84649521 None:intergenic
TTCAACAAATAGGTACCCTG+GGG 0.698699 3.2:-84649546 MS.gene012982:intron
GTTCCATCAAGATAGGTCGG+GGG 0.742215 3.2:+84650558 None:intergenic
TCAACAAATAGGTACCCTGG+GGG 0.781200 3.2:-84649545 MS.gene012982:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTTGATTATATATATG+CGG + chr3.2:84649793-84649812 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG - chr3.2:84649800-84649819 MS.gene012982:intron 15.0%
!!! TATGTTTTCTATATCATTAT+AGG - chr3.2:84650175-84650194 MS.gene012982:intron 15.0%
!!! AACATAATGGTTTTATATTG+AGG - chr3.2:84649851-84649870 MS.gene012982:intron 20.0%
!!! ATAATCTTGTTTCAACAAAT+AGG - chr3.2:84650438-84650457 MS.gene012982:intron 20.0%
!!! ATTTAAAATCATGTATACGA+TGG - chr3.2:84649954-84649973 MS.gene012982:CDS 20.0%
!!! GTATACATGATTTTAAATAG+CGG + chr3.2:84649952-84649971 None:intergenic 20.0%
! ACGAAGAAAAAAGAAAAACA+CGG + chr3.2:84650389-84650408 None:intergenic 25.0%
! CTCAATATAAAAAACGTTAC+TGG + chr3.2:84649743-84649762 None:intergenic 25.0%
! TCAAGTTATAGTAACGTTAA+GGG - chr3.2:84649528-84649547 MS.gene012982:CDS 25.0%
! TTGCAAATATTCTTGTTACA+GGG - chr3.2:84650615-84650634 MS.gene012982:CDS 25.0%
!! CATAGATTGATAACAAGTTT+AGG + chr3.2:84649989-84650008 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG - chr3.2:84649527-84649546 MS.gene012982:CDS 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG - chr3.2:84649855-84649874 MS.gene012982:intron 25.0%
!!! TGAATAATAGTTTTATGCCA+TGG + chr3.2:84650734-84650753 None:intergenic 25.0%
!!! TGGCATTTTAAGATGAATTT+AGG + chr3.2:84649493-84649512 None:intergenic 25.0%
AAGCTTAAAGAGATCAAGAA+TGG - chr3.2:84650527-84650546 MS.gene012982:intron 30.0%
GTTGCAAATATTCTTGTTAC+AGG - chr3.2:84650614-84650633 MS.gene012982:CDS 30.0%
TGATCTAAACTGCAACATAA+TGG - chr3.2:84649838-84649857 MS.gene012982:intron 30.0%
TTAAAGAATGTTGCTGGAAA+TGG + chr3.2:84649273-84649292 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG - chr3.2:84649289-84649308 MS.gene012982:CDS 30.0%
TTATTAACTTTCACTTGCAC+AGG - chr3.2:84650207-84650226 MS.gene012982:intron 30.0%
! CACTTTTAATGTCTTTAGCT+AGG + chr3.2:84650496-84650515 None:intergenic 30.0%
! GCACAAATTTGTTTATAACG+TGG + chr3.2:84649376-84649395 None:intergenic 30.0%
! GTTTTATATTGAGGTTGGAT+TGG - chr3.2:84649860-84649879 MS.gene012982:intron 30.0%
! TGTTGATTAAAGAATGTTGC+TGG + chr3.2:84649279-84649298 None:intergenic 30.0%
ACAGGTATGCTGAAACAAAA+AGG - chr3.2:84650225-84650244 MS.gene012982:intron 35.0%
ACATACCACTTTAAGCTTTC+AGG + chr3.2:84649612-84649631 None:intergenic 35.0%
CTAAGAACTAGAACTTGCAA+GGG + chr3.2:84650759-84650778 None:intergenic 35.0%
GAGTTAATGGCATACCAATT+TGG - chr3.2:84650028-84650047 MS.gene012982:intron 35.0%
GTTGTTCAACTACTCTTGAT+GGG - chr3.2:84650102-84650121 MS.gene012982:intron 35.0%
TCACAATTGTAAGCTAGTTG+AGG - chr3.2:84650412-84650431 MS.gene012982:CDS 35.0%
TGCAACTATGAAAACAAGCT+TGG + chr3.2:84650600-84650619 None:intergenic 35.0%
TTGTTCAACTACTCTTGATG+GGG - chr3.2:84650103-84650122 MS.gene012982:intron 35.0%
TTTCAACAAATAGGTACCCT+GGG - chr3.2:84650447-84650466 MS.gene012982:intron 35.0%
! TACATGGATTTTGTTAGTCC+TGG - chr3.2:84650248-84650267 MS.gene012982:intron 35.0%
! TGCTGAAACAAAAAGGTACA+TGG - chr3.2:84650232-84650251 MS.gene012982:intron 35.0%
!! ACATTAAAAGTGCTCGTGAA+TGG - chr3.2:84650504-84650523 MS.gene012982:intron 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG - chr3.2:84650039-84650058 MS.gene012982:intron 35.0%
AAATACGAGTTTGCCAACAC+AGG - chr3.2:84650069-84650088 MS.gene012982:intron 40.0%
AATACGAGTTTGCCAACACA+GGG - chr3.2:84650070-84650089 MS.gene012982:intron 40.0%
AGGATCCTGAAAGCTTAAAG+TGG - chr3.2:84649604-84649623 MS.gene012982:intron 40.0%
ATTGGTAAACCTTCAACAGC+AGG - chr3.2:84649307-84649326 MS.gene012982:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG - chr3.2:84650101-84650120 MS.gene012982:intron 40.0%
CTTGAAAAGAGAACTAGCAC+TGG + chr3.2:84649513-84649532 None:intergenic 40.0%
CTTGCAATGGTAGCAATACT+TGG - chr3.2:84650641-84650660 MS.gene012982:CDS 40.0%
GTGTGTGTTTGTACGGTTAT+CGG + chr3.2:84650349-84650368 None:intergenic 40.0%
GTTTCAACAAATAGGTACCC+TGG - chr3.2:84650446-84650465 MS.gene012982:intron 40.0%
GTTTGTACGGTTATCGGAAA+TGG + chr3.2:84650343-84650362 None:intergenic 40.0%
TACGTTCCATCAAGATAGGT+CGG + chr3.2:84649442-84649461 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG + chr3.2:84649886-84649905 None:intergenic 40.0%
TATCGGAAATGGAAATACCC+TGG + chr3.2:84650332-84650351 None:intergenic 40.0%
TCAACTCATCAACCAGAAGT+TGG + chr3.2:84650150-84650169 None:intergenic 40.0%
TGCACAAGTGTGTGTTTGTA+CGG + chr3.2:84650356-84650375 None:intergenic 40.0%
TGCTCCACAAGGTTATCAAT+TGG + chr3.2:84650701-84650720 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG + chr3.2:84649475-84649494 None:intergenic 40.0%
TTCAACAAATAGGTACCCTG+GGG - chr3.2:84650448-84650467 MS.gene012982:intron 40.0%
TTGGCTGTGATTCTCTATCA+AGG - chr3.2:84649889-84649908 MS.gene012982:intron 40.0%
TTTGCAATGCTTGGAGTCTT+GGG - chr3.2:84649657-84649676 MS.gene012982:intron 40.0%
! TGGACCAATTGATAACCTTG+TGG - chr3.2:84650694-84650713 MS.gene012982:CDS 40.0%
! TTAGATCATCGTAGCTTTGC+AGG + chr3.2:84649826-84649845 None:intergenic 40.0%
!! TGGGGTAGGATTTTAATCAC+TGG - chr3.2:84650121-84650140 MS.gene012982:intron 40.0%
AATCTCCAGGCAGACTGAAA+AGG + chr3.2:84649557-84649576 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG + chr3.2:84649441-84649460 None:intergenic 45.0%
AGAGGGTTCCTTCTTTGGAT+TGG - chr3.2:84650283-84650302 MS.gene012982:intron 45.0%
ATGTCTTTAGCTAGGCCAAG+AGG + chr3.2:84650488-84650507 None:intergenic 45.0%
CAAGCTTCAGTGACTCATGT+TGG - chr3.2:84650674-84650693 MS.gene012982:CDS 45.0%
CATTCTCGCTTTGCAATGCT+TGG - chr3.2:84649648-84649667 MS.gene012982:intron 45.0%
CCTGGATCTCAAGCTAAAGA+GGG - chr3.2:84650266-84650285 MS.gene012982:intron 45.0%
CTTTGCAATGCTTGGAGTCT+TGG - chr3.2:84649656-84649675 MS.gene012982:intron 45.0%
GATTTGAGAGATGCTCCACA+AGG + chr3.2:84650712-84650731 None:intergenic 45.0%
GCACCAGCTTCAAACCAAAT+TGG + chr3.2:84650045-84650064 None:intergenic 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG - chr3.2:84650278-84650297 MS.gene012982:intron 45.0%
GGCTTACGTTCCATCAAGAT+AGG + chr3.2:84649446-84649465 None:intergenic 45.0%
TCAACAAATAGGTACCCTGG+GGG - chr3.2:84650449-84650468 MS.gene012982:intron 45.0%
TCAACTACTCTTGATGGGGT+AGG - chr3.2:84650107-84650126 MS.gene012982:intron 45.0%
TCCTGGATCTCAAGCTAAAG+AGG - chr3.2:84650265-84650284 MS.gene012982:intron 45.0%
TGAAGCCTCCAATCCAAAGA+AGG + chr3.2:84650294-84650313 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+TGG + chr3.2:84649467-84649486 None:intergenic 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG - chr3.2:84649559-84649578 MS.gene012982:intron 45.0%
! TGGAGCATCTCTCAAATCCA+TGG - chr3.2:84650714-84650733 MS.gene012982:CDS 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG - chr3.2:84649558-84649577 MS.gene012982:intron 45.0%
! TTTGGATTGGAGGCTTCACT+TGG - chr3.2:84650296-84650315 MS.gene012982:intron 45.0%
!! AATCACTGGCTTCCAACTTC+TGG - chr3.2:84650135-84650154 MS.gene012982:intron 45.0%
AGGCCAAGAGGATTTAGCAG+AGG + chr3.2:84650476-84650495 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG + chr3.2:84649440-84649459 None:intergenic 50.0%
GATCCTCTCCAAGTCCAAGT+GGG + chr3.2:84649590-84649609 None:intergenic 50.0%
GGTCCTCTGCTAAATCCTCT+TGG - chr3.2:84650470-84650489 MS.gene012982:intron 50.0%
GTGGTATGTGCAAGCAGAGT+TGG - chr3.2:84649623-84649642 MS.gene012982:intron 50.0%
GTTCCATCAAGATAGGTCGG+GGG + chr3.2:84649439-84649458 None:intergenic 50.0%
TGTTACAGGGCGACTTGCAA+TGG - chr3.2:84650628-84650647 MS.gene012982:CDS 50.0%
! GGGTTCCTTCTTTGGATTGG+AGG - chr3.2:84650286-84650305 MS.gene012982:intron 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG - chr3.2:84649549-84649568 MS.gene012982:intron 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG + chr3.2:84650269-84650288 None:intergenic 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG - chr3.2:84649870-84649889 MS.gene012982:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG - chr3.2:84649573-84649592 MS.gene012982:intron 50.0%
AACGACGAGTGTCCCTGTGT+TGG + chr3.2:84650085-84650104 None:intergenic 55.0%
CACTTGGAGGCTTAGAGCCA+GGG - chr3.2:84650312-84650331 MS.gene012982:intron 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG + chr3.2:84649319-84649338 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG - chr3.2:84649317-84649336 MS.gene012982:CDS 55.0%
CTTCGCGTCGCAGGAGTTAA+TGG - chr3.2:84650015-84650034 MS.gene012982:intron 55.0%
GATCCCCCGACCTATCTTGA+TGG - chr3.2:84649433-84649452 MS.gene012982:intron 55.0%
GATTTAGCAGAGGACCCCCA+GGG + chr3.2:84650466-84650485 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG + chr3.2:84649591-84649610 None:intergenic 55.0%
GGATTGGAGGCTTCACTTGG+AGG - chr3.2:84650299-84650318 MS.gene012982:intron 55.0%
GGGTCGAACCCAAAATCTCC+AGG + chr3.2:84649570-84649589 None:intergenic 55.0%
TCACTTGGAGGCTTAGAGCC+AGG - chr3.2:84650311-84650330 MS.gene012982:intron 55.0%
ATCAAGTCCCGGGAGCCATG+TGG + chr3.2:84649416-84649435 None:intergenic 60.0%
ATGCAGCTACTTCGCGTCGC+AGG - chr3.2:84650006-84650025 MS.gene012982:intron 60.0%
CAGCACAACAGCGACCCACA+TGG - chr3.2:84649398-84649417 MS.gene012982:intron 60.0%
CGACCCACTTGGACTTGGAG+AGG - chr3.2:84649584-84649603 MS.gene012982:intron 60.0%
GGATTTAGCAGAGGACCCCC+AGG + chr3.2:84650467-84650486 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG - chr3.2:84649579-84649598 MS.gene012982:intron 60.0%
TAGGTCGGGGGATCAAGTCC+CGG + chr3.2:84649427-84649446 None:intergenic 60.0%
TCAAGTCCCGGGAGCCATGT+GGG + chr3.2:84649415-84649434 None:intergenic 60.0%
ACAGCGACCCACATGGCTCC+CGG - chr3.2:84649405-84649424 MS.gene012982:intron 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG + chr3.2:84649349-84649368 None:intergenic 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG - chr3.2:84649343-84649362 MS.gene012982:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG + chr3.2:84649426-84649445 None:intergenic 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG - chr3.2:84649342-84649361 MS.gene012982:CDS 65.0%
!! CAGCAGGACACCACTGGCTC+AGG - chr3.2:84649323-84649342 MS.gene012982:CDS 65.0%
CAGCAGCAGGCCTGAGCCAG+TGG + chr3.2:84649336-84649355 None:intergenic 70.0%
CAGCGACCCACATGGCTCCC+GGG - chr3.2:84649406-84649425 MS.gene012982:intron 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG - chr3.2:84649337-84649356 MS.gene012982:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 84649238 84650778 84649238 ID=MS.gene012982
chr3.2 mRNA 84649238 84650778 84649238 ID=MS.gene012982.t1;Parent=MS.gene012982
chr3.2 exon 84650558 84650778 84650558 ID=MS.gene012982.t1.exon1;Parent=MS.gene012982.t1
chr3.2 CDS 84650558 84650778 84650558 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
chr3.2 exon 84650321 84650453 84650321 ID=MS.gene012982.t1.exon2;Parent=MS.gene012982.t1
chr3.2 CDS 84650321 84650453 84650321 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
chr3.2 exon 84649892 84650004 84649892 ID=MS.gene012982.t1.exon3;Parent=MS.gene012982.t1
chr3.2 CDS 84649892 84650004 84649892 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
chr3.2 exon 84649683 84649787 84649683 ID=MS.gene012982.t1.exon4;Parent=MS.gene012982.t1
chr3.2 CDS 84649683 84649787 84649683 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
chr3.2 exon 84649468 84649556 84649468 ID=MS.gene012982.t1.exon5;Parent=MS.gene012982.t1
chr3.2 CDS 84649468 84649556 84649468 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
chr3.2 exon 84649238 84649380 84649238 ID=MS.gene012982.t1.exon6;Parent=MS.gene012982.t1
chr3.2 CDS 84649238 84649380 84649238 ID=cds.MS.gene012982.t1;Parent=MS.gene012982.t1
Gene Sequence

>MS.gene012982

ATGGTTGCACTTGCAGCAATAGCAAGAAGCTTCCATTTCCAGCAACATTCTTTAATCAACAGCAATGTCATTGGTAAACCTTCAACAGCAGGACACCACTGGCTCAGGCCTGCTGCTGCAGGAACGGGAGTCACTCCACGTTATAAACAAATTTGTGCTGCAGCACAACAGCGACCCACATGGCTCCCGGGACTTGATCCCCCGACCTATCTTGATGGAACGTAAGCCATTACGCCTCTCTGCATTTTGACTCCTAAATTCATCTTAAAATGCCAGTGCTAGTTCTCTTTTCAAGTTATAGTAACGTTAAGGGTAACCTTTTCAGTCTGCCTGGAGATTTTGGGTTCGACCCACTTGGACTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGAGTCTTGGGAATTTTAGTCACAGATGTGAGTCACGCAACTCTTAACATAATTTTTCACATTTCATAATTCCAGTAACGTTTTTTATATTGAGAGAAGCTTTACTATTAAAACACACGCGCCGCATATATATAATCAAAGTTTTGAATAAAGGCCTGCAAAGCTACGATGATCTAAACTGCAACATAATGGTTTTATATTGAGGTTGGATTGGCCATGTTTGGCTGTGATTCTCTATCAAGGATCGCGAGACAGCTGTAACTGTATCACAAGTTCACAACCGCTATTTAAAATCATGTATACGATGGACATTTCATCCTAAACTTGTTATCAATCTATGCAGCTACTTCGCGTCGCAGGAGTTAATGGCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGGGACACTCGTCGTTGTTCAACTACTCTTGATGGGGTAGGATTTTAATCACTGGCTTCCAACTTCTGGTTGATGAGTTGAGCTTCTATGTTTTCTATATCATTATAGGACATGTGATTTATTAACTTTCACTTGCACAGGTATGCTGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGATTGGAGGCTTCACTTGGAGGCTTAGAGCCAGGGTATTTCCATTTCCGATAACCGTACAAACACACACTTGTGCACACTTTTGAGCCGTGTTTTTCTTTTTTCTTCGTTATTCACAATTGTAAGCTAGTTGAGGTATATAATCTTGTTTCAACAAATAGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAGTGCTCGTGAATGGAAGCTTAAAGAGATCAAGAATGGTATATTTTTTCTCAGTTTTTCATTCTTTGTCTGTTAATTCATAATCTCCAAGCTTGTTTTCATAGTTGCAAATATTCTTGTTACAGGGCGACTTGCAATGGTAGCAATACTTGGTATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCAAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG
Protein sequence

>MS.gene012982.t1

MVALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRYKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNGIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETKRYMDFVSPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS