Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025854.t1 | XP_003626612.1 | 80.1 | 186 | 30 | 3 | 1 | 185 | 1 | 180 | 1.70E-71 | 278.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025854.t1 | Q8LCA1 | 56.8 | 183 | 62 | 4 | 5 | 182 | 2 | 172 | 4.0e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025854.t1 | Q2HTB6 | 80.1 | 186 | 30 | 3 | 1 | 185 | 1 | 180 | 1.3e-71 | 278.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025854 | MS.gene044778 | PPI |
| MS.gene039151 | MS.gene025854 | PPI |
| MS.gene025854 | MS.gene38715 | PPI |
| MS.gene040618 | MS.gene025854 | PPI |
| MS.gene025854 | MS.gene054642 | PPI |
| MS.gene66718 | MS.gene025854 | PPI |
| MS.gene025854 | MS.gene012982 | PPI |
| MS.gene98588 | MS.gene025854 | PPI |
| MS.gene48506 | MS.gene025854 | PPI |
| MS.gene025854 | MS.gene88194 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025854.t1 | MTR_7g118290 | 91.279 | 172 | 8 | 3 | 15 | 185 | 15 | 180 | 1.41e-109 | 310 |
| MS.gene025854.t1 | MTR_7g118290 | 79.070 | 172 | 8 | 4 | 15 | 185 | 15 | 159 | 6.11e-88 | 255 |
| MS.gene025854.t1 | MTR_7g118290 | 80.435 | 138 | 15 | 5 | 15 | 151 | 15 | 141 | 5.44e-68 | 204 |
| MS.gene025854.t1 | MTR_8g024180 | 56.962 | 158 | 52 | 3 | 25 | 182 | 27 | 168 | 5.81e-50 | 159 |
| MS.gene025854.t1 | MTR_4g013200 | 35.172 | 145 | 86 | 1 | 38 | 182 | 9 | 145 | 3.59e-25 | 95.5 |
| MS.gene025854.t1 | MTR_7g116795 | 31.410 | 156 | 89 | 3 | 29 | 184 | 24 | 161 | 4.83e-21 | 85.1 |
| MS.gene025854.t1 | MTR_5g032440 | 28.696 | 115 | 81 | 1 | 69 | 182 | 67 | 181 | 7.78e-15 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025854.t1 | AT2G46820 | 63.265 | 147 | 45 | 2 | 36 | 182 | 35 | 172 | 1.56e-56 | 176 |
| MS.gene025854.t1 | AT2G46820 | 63.265 | 147 | 45 | 2 | 36 | 182 | 35 | 172 | 1.56e-56 | 176 |
| MS.gene025854.t1 | AT1G52220 | 47.525 | 101 | 52 | 1 | 82 | 182 | 56 | 155 | 1.78e-26 | 99.0 |
| MS.gene025854.t1 | AT1G52220 | 47.525 | 101 | 51 | 2 | 82 | 182 | 56 | 154 | 1.04e-24 | 94.4 |
| MS.gene025854.t1 | AT4G01150 | 32.919 | 161 | 87 | 4 | 25 | 182 | 20 | 162 | 4.00e-23 | 90.5 |
| MS.gene025854.t1 | AT4G38100 | 35.789 | 95 | 58 | 1 | 91 | 185 | 101 | 192 | 1.14e-14 | 69.3 |
| MS.gene025854.t1 | AT4G38100 | 35.789 | 95 | 58 | 1 | 91 | 185 | 61 | 152 | 1.84e-14 | 67.8 |
| MS.gene025854.t1 | AT1G52220 | 46.479 | 71 | 37 | 1 | 82 | 152 | 56 | 125 | 2.63e-13 | 64.3 |
| MS.gene025854.t1 | AT1G52220 | 52.000 | 50 | 24 | 0 | 133 | 182 | 77 | 126 | 1.96e-12 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATAGTCTTTAGAAATTC+TGG | 0.176189 | 7.1:+344423 | None:intergenic |
| GATAGGCTTCCTTTAATTCC+TGG | 0.266011 | 7.1:-343869 | MS.gene025854:CDS |
| TCTTCATTCACTCTTATTGA+TGG | 0.283095 | 7.1:-344760 | MS.gene025854:CDS |
| ACAGAAAGCGGTGGTCTTCC+AGG | 0.290167 | 7.1:+344651 | None:intergenic |
| GTTGCATTATGGGGCTCAGC+TGG | 0.318460 | 7.1:-344238 | MS.gene025854:CDS |
| TCAAGAACCCCAGGAATTAA+AGG | 0.320013 | 7.1:+343860 | None:intergenic |
| TAGCAGGTACGGTTGCATTA+TGG | 0.324488 | 7.1:-344249 | MS.gene025854:CDS |
| AGCAGGTACGGTTGCATTAT+GGG | 0.359470 | 7.1:-344248 | MS.gene025854:CDS |
| ATAGGCTTCCTTTAATTCCT+GGG | 0.369347 | 7.1:-343868 | MS.gene025854:CDS |
| AAGAGTGAATGAAGAGAAAG+TGG | 0.378344 | 7.1:+344768 | None:intergenic |
| TGGTCTTCCAGGGACGAGTA+TGG | 0.381671 | 7.1:+344662 | None:intergenic |
| GCTTTGATACGCAAAATAAA+AGG | 0.394589 | 7.1:-343593 | MS.gene025854:CDS |
| TTGCATTATGGGGCTCAGCT+GGG | 0.412672 | 7.1:-344237 | MS.gene025854:CDS |
| GAAAGTGGAAGATGAGGCTG+AGG | 0.422883 | 7.1:+344783 | None:intergenic |
| CTCGTAGGCATTGGCTACAC+TGG | 0.433498 | 7.1:-343836 | MS.gene025854:CDS |
| TGATGAAACAGGCTATTGAT+AGG | 0.459015 | 7.1:-343886 | MS.gene025854:intron |
| ACCGATCTGGCTTGAAAACT+AGG | 0.468356 | 7.1:+343694 | None:intergenic |
| TGGAGAAGCAGAGTGTCTGC+AGG | 0.469794 | 7.1:+344729 | None:intergenic |
| TGCATTATGGGGCTCAGCTG+GGG | 0.492851 | 7.1:-344236 | MS.gene025854:CDS |
| TGGGACTGAACAGGTGGAGG+GGG | 0.502807 | 7.1:+344682 | None:intergenic |
| TGCTCTAGCGGTAGCAGGTA+CGG | 0.502934 | 7.1:-344260 | MS.gene025854:CDS |
| ATCTGCCTCTGTTTCTGTTG+TGG | 0.505718 | 7.1:+344500 | None:intergenic |
| TTCAGTCCCATACTCGTCCC+TGG | 0.506421 | 7.1:-344669 | MS.gene025854:CDS |
| GTTCTTGAACTCGTAGGCAT+TGG | 0.511626 | 7.1:-343845 | MS.gene025854:CDS |
| GGACGAGTATGGGACTGAAC+AGG | 0.517757 | 7.1:+344673 | None:intergenic |
| TGCTCGCAATGTTATGTCCA+TGG | 0.518500 | 7.1:-344532 | MS.gene025854:CDS |
| AGTGGAAGATGAGGCTGAGG+AGG | 0.528576 | 7.1:+344786 | None:intergenic |
| GGCACTGTTAAAGACATCAC+TGG | 0.529095 | 7.1:-343572 | MS.gene025854:CDS |
| GGTCTTCCAGGGACGAGTAT+GGG | 0.539747 | 7.1:+344663 | None:intergenic |
| AGAATCAGTGACAGTAGTAC+TGG | 0.542464 | 7.1:+344446 | None:intergenic |
| GTGAGTGCTCTAGCGGTAGC+AGG | 0.543399 | 7.1:-344265 | MS.gene025854:CDS |
| AAGAGCATAGCATACCGATC+TGG | 0.544761 | 7.1:+343681 | None:intergenic |
| GTATGGGACTGAACAGGTGG+AGG | 0.553903 | 7.1:+344679 | None:intergenic |
| TAGGCTTCCTTTAATTCCTG+GGG | 0.554551 | 7.1:-343867 | MS.gene025854:CDS |
| TGTTGTGGTACTTGAAGCCA+TGG | 0.559345 | 7.1:+344515 | None:intergenic |
| TCGTAGGCATTGGCTACACT+GGG | 0.562769 | 7.1:-343835 | MS.gene025854:CDS |
| AGTTGAGGCAACCTCTGTTG+TGG | 0.572988 | 7.1:+344473 | None:intergenic |
| TATGGGACTGAACAGGTGGA+GGG | 0.576384 | 7.1:+344680 | None:intergenic |
| CAGAAAGCGGTGGTCTTCCA+GGG | 0.585352 | 7.1:+344652 | None:intergenic |
| TGTATTTGACTTACAGAAAG+CGG | 0.587004 | 7.1:+344639 | None:intergenic |
| CGAGTATGGGACTGAACAGG+TGG | 0.598195 | 7.1:+344676 | None:intergenic |
| AGTAGTACTGGTGTCAGTTG+AGG | 0.598742 | 7.1:+344458 | None:intergenic |
| ATGGGACTGAACAGGTGGAG+GGG | 0.599012 | 7.1:+344681 | None:intergenic |
| GCAGGTACGGTTGCATTATG+GGG | 0.603721 | 7.1:-344247 | MS.gene025854:CDS |
| TGAAGAGAAAGTGGAAGATG+AGG | 0.604075 | 7.1:+344777 | None:intergenic |
| GTTGGAAGGCTCACACATTG+TGG | 0.610597 | 7.1:+344709 | None:intergenic |
| CCTGGGGTTCTTGAACTCGT+AGG | 0.612235 | 7.1:-343851 | MS.gene025854:CDS |
| CCTACGAGTTCAAGAACCCC+AGG | 0.617642 | 7.1:+343851 | None:intergenic |
| GGAGAAGCAGAGTGTCTGCA+GGG | 0.624844 | 7.1:+344730 | None:intergenic |
| GTATGCAGTGAGTGCTCTAG+CGG | 0.647497 | 7.1:-344272 | MS.gene025854:CDS |
| GCACTGTTAAAGACATCACT+GGG | 0.652022 | 7.1:-343571 | MS.gene025854:CDS |
| GGCAGATGCAGCCACAACAG+AGG | 0.654208 | 7.1:-344484 | MS.gene025854:CDS |
| AAGTACCACAACAGAAACAG+AGG | 0.689454 | 7.1:-344505 | MS.gene025854:CDS |
| ATTTGACTTACAGAAAGCGG+TGG | 0.698122 | 7.1:+344642 | None:intergenic |
| GAAGCAGAGTGTCTGCAGGG+AGG | 0.716854 | 7.1:+344733 | None:intergenic |
| CGTAGGCATTGGCTACACTG+GGG | 0.765097 | 7.1:-343834 | MS.gene025854:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAATATATAATTGC+AGG | - | chr7.1:344730-344749 | MS.gene025854:CDS | 10.0% |
| !! | ATTAATAATATATAATTGCA+GGG | - | chr7.1:344731-344750 | MS.gene025854:CDS | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr7.1:344289-344308 | MS.gene025854:CDS | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr7.1:344288-344307 | MS.gene025854:CDS | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+AGG | - | chr7.1:344224-344243 | MS.gene025854:intron | 15.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr7.1:344247-344266 | MS.gene025854:CDS | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr7.1:344248-344267 | MS.gene025854:CDS | 20.0% |
| !! | AATAATCTGTTTCCATAATT+TGG | - | chr7.1:344695-344714 | MS.gene025854:CDS | 20.0% |
| !! | ATATAATTGAATTTGTGTGT+TGG | - | chr7.1:343771-343790 | MS.gene025854:intron | 20.0% |
| !! | GTAGTATATTATATGCAAAA+AGG | + | chr7.1:344159-344178 | None:intergenic | 20.0% |
| !! | TATATTATATGCAAAAAGGA+AGG | + | chr7.1:344155-344174 | None:intergenic | 20.0% |
| !! | TGTATAAATAAAAGGAAAAG+TGG | - | chr7.1:344232-344251 | MS.gene025854:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr7.1:344358-344377 | MS.gene025854:intron | 20.0% |
| !!! | TGAAATGAATCAGTTATTTT+GGG | - | chr7.1:344336-344355 | MS.gene025854:intron | 20.0% |
| !!! | TTGAAATGAATCAGTTATTT+TGG | - | chr7.1:344335-344354 | MS.gene025854:intron | 20.0% |
| ! | AATAATATATAATTGCAGGG+AGG | - | chr7.1:344734-344753 | MS.gene025854:CDS | 25.0% |
| ! | CAATCTATTGAACCAAATTA+TGG | + | chr7.1:344710-344729 | None:intergenic | 25.0% |
| !! | TGTATAGTCTTTAGAAATTC+TGG | + | chr7.1:343929-343948 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr7.1:344357-344376 | MS.gene025854:intron | 25.0% |
| ATAGTATATGTGTGTTGAGT+TGG | - | chr7.1:344006-344025 | MS.gene025854:intron | 30.0% | |
| GATTGGATGTAATGTATAGT+GGG | - | chr7.1:344038-344057 | MS.gene025854:intron | 30.0% | |
| GCTTTGATACGCAAAATAAA+AGG | - | chr7.1:344756-344775 | MS.gene025854:CDS | 30.0% | |
| TCTTCATTCACTCTTATTGA+TGG | - | chr7.1:343589-343608 | MS.gene025854:CDS | 30.0% | |
| ! | TGTATTTGACTTACAGAAAG+CGG | + | chr7.1:343713-343732 | None:intergenic | 30.0% |
| AAGAGTGAATGAAGAGAAAG+TGG | + | chr7.1:343584-343603 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr7.1:344371-344390 | MS.gene025854:intron | 35.0% | |
| ATAGGCTTCCTTTAATTCCT+GGG | - | chr7.1:344481-344500 | MS.gene025854:CDS | 35.0% | |
| ATCTGCAGAAGATACAAAGT+AGG | + | chr7.1:344547-344566 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr7.1:344188-344207 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr7.1:344189-344208 | None:intergenic | 35.0% | |
| GGATTGGATGTAATGTATAG+TGG | - | chr7.1:344037-344056 | MS.gene025854:intron | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr7.1:344202-344221 | None:intergenic | 35.0% | |
| TGATGAAACAGGCTATTGAT+AGG | - | chr7.1:344463-344482 | MS.gene025854:CDS | 35.0% | |
| !! | ATATGTGTGTTGAGTTGGAT+TGG | - | chr7.1:344011-344030 | MS.gene025854:intron | 35.0% |
| AAGTACCACAACAGAAACAG+AGG | - | chr7.1:343844-343863 | MS.gene025854:CDS | 40.0% | |
| AGAATCAGTGACAGTAGTAC+TGG | + | chr7.1:343906-343925 | None:intergenic | 40.0% | |
| ATAATATACTACCTCCGTCC+CGG | - | chr7.1:344167-344186 | MS.gene025854:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr7.1:344186-344205 | MS.gene025854:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr7.1:344372-344391 | MS.gene025854:intron | 40.0% | |
| GATAGGCTTCCTTTAATTCC+TGG | - | chr7.1:344480-344499 | MS.gene025854:CDS | 40.0% | |
| GCACTGTTAAAGACATCACT+GGG | - | chr7.1:344778-344797 | MS.gene025854:CDS | 40.0% | |
| TAGGCTTCCTTTAATTCCTG+GGG | - | chr7.1:344482-344501 | MS.gene025854:CDS | 40.0% | |
| TCAAGAACCCCAGGAATTAA+AGG | + | chr7.1:344492-344511 | None:intergenic | 40.0% | |
| TCGTATCTTCTTCTTTGCAG+TGG | - | chr7.1:344618-344637 | MS.gene025854:intron | 40.0% | |
| TGAAGAGAAAGTGGAAGATG+AGG | + | chr7.1:343575-343594 | None:intergenic | 40.0% | |
| ! | ATTTGACTTACAGAAAGCGG+TGG | + | chr7.1:343710-343729 | None:intergenic | 40.0% |
| ! | TGAGTTGGATTGGATTGGAT+TGG | - | chr7.1:344021-344040 | MS.gene025854:intron | 40.0% |
| !! | ACCTAGTTTTCAAGCCAGAT+CGG | - | chr7.1:344654-344673 | MS.gene025854:CDS | 40.0% |
| !! | TGTGTTGAGTTGGATTGGAT+TGG | - | chr7.1:344016-344035 | MS.gene025854:intron | 40.0% |
| AGCAGGTACGGTTGCATTAT+GGG | - | chr7.1:344101-344120 | MS.gene025854:intron | 45.0% | |
| ATAATATACTCCCTCCGTCC+CGG | + | chr7.1:344393-344412 | None:intergenic | 45.0% | |
| GCATCTGCATCTGATGAAAC+AGG | - | chr7.1:344452-344471 | MS.gene025854:CDS | 45.0% | |
| GGCACTGTTAAAGACATCAC+TGG | - | chr7.1:344777-344796 | MS.gene025854:CDS | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr7.1:344184-344203 | None:intergenic | 45.0% | |
| GTTCTTGAACTCGTAGGCAT+TGG | - | chr7.1:344504-344523 | MS.gene025854:CDS | 45.0% | |
| TAGCAGGTACGGTTGCATTA+TGG | - | chr7.1:344100-344119 | MS.gene025854:intron | 45.0% | |
| TGCTCGCAATGTTATGTCCA+TGG | - | chr7.1:343817-343836 | MS.gene025854:intron | 45.0% | |
| TGTTGTGGTACTTGAAGCCA+TGG | + | chr7.1:343837-343856 | None:intergenic | 45.0% | |
| ! | AAGAGCATAGCATACCGATC+TGG | + | chr7.1:344671-344690 | None:intergenic | 45.0% |
| ! | ACCGATCTGGCTTGAAAACT+AGG | + | chr7.1:344658-344677 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCACTCAGGT+CGG | - | chr7.1:343789-343808 | MS.gene025854:intron | 45.0% |
| !! | AGTAGTACTGGTGTCAGTTG+AGG | + | chr7.1:343894-343913 | None:intergenic | 45.0% |
| !! | ATCTGCCTCTGTTTCTGTTG+TGG | + | chr7.1:343852-343871 | None:intergenic | 45.0% |
| !! | GTGTGTTGGTTGATTCACTC+AGG | - | chr7.1:343785-343804 | MS.gene025854:intron | 45.0% |
| AGTTGAGGCAACCTCTGTTG+TGG | + | chr7.1:343879-343898 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr7.1:344376-344395 | MS.gene025854:intron | 50.0% | |
| GAAAGTGGAAGATGAGGCTG+AGG | + | chr7.1:343569-343588 | None:intergenic | 50.0% | |
| GCAGGTACGGTTGCATTATG+GGG | - | chr7.1:344102-344121 | MS.gene025854:intron | 50.0% | |
| GTATGCAGTGAGTGCTCTAG+CGG | - | chr7.1:344077-344096 | MS.gene025854:intron | 50.0% | |
| GTTGGAAGGCTCACACATTG+TGG | + | chr7.1:343643-343662 | None:intergenic | 50.0% | |
| TATGGGACTGAACAGGTGGA+GGG | + | chr7.1:343672-343691 | None:intergenic | 50.0% | |
| TTGCATTATGGGGCTCAGCT+GGG | - | chr7.1:344112-344131 | MS.gene025854:intron | 50.0% | |
| !! | TCGTAGGCATTGGCTACACT+GGG | - | chr7.1:344514-344533 | MS.gene025854:CDS | 50.0% |
| ACAGAAAGCGGTGGTCTTCC+AGG | + | chr7.1:343701-343720 | None:intergenic | 55.0% | |
| AGTGGAAGATGAGGCTGAGG+AGG | + | chr7.1:343566-343585 | None:intergenic | 55.0% | |
| ATGGGACTGAACAGGTGGAG+GGG | + | chr7.1:343671-343690 | None:intergenic | 55.0% | |
| CAGAAAGCGGTGGTCTTCCA+GGG | + | chr7.1:343700-343719 | None:intergenic | 55.0% | |
| CCTACGAGTTCAAGAACCCC+AGG | + | chr7.1:344501-344520 | None:intergenic | 55.0% | |
| CCTGGGGTTCTTGAACTCGT+AGG | - | chr7.1:344498-344517 | MS.gene025854:CDS | 55.0% | |
| CGAGTATGGGACTGAACAGG+TGG | + | chr7.1:343676-343695 | None:intergenic | 55.0% | |
| GGACGAGTATGGGACTGAAC+AGG | + | chr7.1:343679-343698 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr7.1:344181-344200 | None:intergenic | 55.0% | |
| GGTCTTCCAGGGACGAGTAT+GGG | + | chr7.1:343689-343708 | None:intergenic | 55.0% | |
| GTATGGGACTGAACAGGTGG+AGG | + | chr7.1:343673-343692 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr7.1:344380-344399 | MS.gene025854:intron | 55.0% | |
| GTTGCATTATGGGGCTCAGC+TGG | - | chr7.1:344111-344130 | MS.gene025854:intron | 55.0% | |
| TGCATTATGGGGCTCAGCTG+GGG | - | chr7.1:344113-344132 | MS.gene025854:intron | 55.0% | |
| TGCTCTAGCGGTAGCAGGTA+CGG | - | chr7.1:344089-344108 | MS.gene025854:intron | 55.0% | |
| TGGTCTTCCAGGGACGAGTA+TGG | + | chr7.1:343690-343709 | None:intergenic | 55.0% | |
| TTCAGTCCCATACTCGTCCC+TGG | - | chr7.1:343680-343699 | MS.gene025854:intron | 55.0% | |
| ! | GGAGAAGCAGAGTGTCTGCA+GGG | + | chr7.1:343622-343641 | None:intergenic | 55.0% |
| ! | TGGAGAAGCAGAGTGTCTGC+AGG | + | chr7.1:343623-343642 | None:intergenic | 55.0% |
| !! | CGTAGGCATTGGCTACACTG+GGG | - | chr7.1:344515-344534 | MS.gene025854:CDS | 55.0% |
| !! | CTCGTAGGCATTGGCTACAC+TGG | - | chr7.1:344513-344532 | MS.gene025854:CDS | 55.0% |
| ACAGGTGGAGGGGGAAGAGT+TGG | + | chr7.1:343661-343680 | None:intergenic | 60.0% | |
| GGCAGATGCAGCCACAACAG+AGG | - | chr7.1:343865-343884 | MS.gene025854:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr7.1:344379-344398 | MS.gene025854:intron | 60.0% | |
| GTGAGTGCTCTAGCGGTAGC+AGG | - | chr7.1:344084-344103 | MS.gene025854:intron | 60.0% | |
| GTGGAGGGGGAAGAGTTGGA+AGG | + | chr7.1:343657-343676 | None:intergenic | 60.0% | |
| TGGGACTGAACAGGTGGAGG+GGG | + | chr7.1:343670-343689 | None:intergenic | 60.0% | |
| ! | GAAGCAGAGTGTCTGCAGGG+AGG | + | chr7.1:343619-343638 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 343559 | 344812 | 343559 | ID=MS.gene025854 |
| chr7.1 | mRNA | 343559 | 344812 | 343559 | ID=MS.gene025854.t1;Parent=MS.gene025854 |
| chr7.1 | exon | 344653 | 344812 | 344653 | ID=MS.gene025854.t1.exon1;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 344653 | 344812 | 344653 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| chr7.1 | exon | 344416 | 344564 | 344416 | ID=MS.gene025854.t1.exon2;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 344416 | 344564 | 344416 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| chr7.1 | exon | 344228 | 344314 | 344228 | ID=MS.gene025854.t1.exon3;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 344228 | 344314 | 344228 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| chr7.1 | exon | 343835 | 343897 | 343835 | ID=MS.gene025854.t1.exon4;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 343835 | 343897 | 343835 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| chr7.1 | exon | 343696 | 343733 | 343696 | ID=MS.gene025854.t1.exon5;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 343696 | 343733 | 343696 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| chr7.1 | exon | 343559 | 343619 | 343559 | ID=MS.gene025854.t1.exon6;Parent=MS.gene025854.t1 |
| chr7.1 | CDS | 343559 | 343619 | 343559 | ID=cds.MS.gene025854.t1;Parent=MS.gene025854.t1 |
| Gene Sequence |
| Protein sequence |
