Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039151.t1 | XP_003595981.1 | 97.1 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 8.00E-66 | 259.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039151.t1 | P06183 | 74.8 | 139 | 31 | 2 | 1 | 136 | 1 | 138 | 4.1e-50 | 198.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039151.t1 | G7IJ44 | 97.1 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 5.8e-66 | 259.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene48506 | MS.gene039151 | PPI |
MS.gene039151 | MS.gene88194 | PPI |
MS.gene039151 | MS.gene012982 | PPI |
MS.gene039151 | MS.gene025854 | PPI |
MS.gene039151 | MS.gene66718 | PPI |
MS.gene039151 | MS.gene050699 | PPI |
MS.gene039151 | MS.gene044778 | PPI |
MS.gene039151 | MS.gene38715 | PPI |
MS.gene039151 | MS.gene054642 | PPI |
MS.gene039151 | MS.gene024386 | PPI |
MS.gene039151 | MS.gene22752 | PPI |
MS.gene039151 | MS.gene98588 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039151.t1 | MTR_2g064650 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.34e-91 | 260 |
MS.gene039151.t1 | MTR_2g064650 | 97.170 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 4.46e-70 | 206 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039151.t1 | AT1G79040 | 70.714 | 140 | 37 | 2 | 1 | 136 | 1 | 140 | 1.22e-63 | 191 |
Find 43 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCGACTGGCTTGGCTATC+TGG | 0.093434 | 2.4:+25489597 | MS.gene039151:CDS |
GTTGAGAGATCTTCAGTTAG+AGG | 0.290239 | 2.4:+25487374 | MS.gene039151:CDS |
CAGTCCTTTGGGTCGTAGAT+AGG | 0.323072 | 2.4:-25488987 | None:intergenic |
CCGGTTGGAGACCAGTCCTT+TGG | 0.338674 | 2.4:-25488999 | None:intergenic |
CCAGATGGAAAAGATGCTTC+TGG | 0.381325 | 2.4:+25487641 | MS.gene039151:CDS |
ATTAAGACTGACACACCTTA+TGG | 0.391389 | 2.4:+25487449 | MS.gene039151:CDS |
CGGTTGGAGACCAGTCCTTT+GGG | 0.408090 | 2.4:-25488998 | None:intergenic |
CACCGTATTTGTCCACAAAC+TGG | 0.410816 | 2.4:-25488549 | None:intergenic |
TGAAATGGCATCTTCAGTTA+TGG | 0.416983 | 2.4:+25487319 | None:intergenic |
TCCGACTGGCTTGGCTATCT+GGG | 0.439109 | 2.4:+25489598 | MS.gene039151:CDS |
ACCACTGGCAACAACTTTGA+AGG | 0.451080 | 2.4:-25487417 | None:intergenic |
AAAGGGTGTTTACCAGTTTG+TGG | 0.454085 | 2.4:+25488537 | MS.gene039151:CDS |
GTGCTAATGTTGATGGATAC+AGG | 0.463270 | 2.4:+25488569 | MS.gene039151:CDS |
CTCTCAACTCTGAAAGGAGT+TGG | 0.463414 | 2.4:-25487359 | None:intergenic |
AAATACGGTGCTAATGTTGA+TGG | 0.464376 | 2.4:+25488562 | MS.gene039151:CDS |
CTTAATCTTCTTGCCACCAC+TGG | 0.469574 | 2.4:-25487432 | None:intergenic |
AACTTTGAAGGGTCTTGAAA+GGG | 0.473819 | 2.4:-25487405 | None:intergenic |
TACCAGTTTGTGGACAAATA+CGG | 0.473942 | 2.4:+25488547 | MS.gene039151:CDS |
TTATTAATTGCAGGTCCGAC+TGG | 0.479017 | 2.4:+25489584 | MS.gene039151:intron |
ATCTGGGCAGTAACTCTAGC+TGG | 0.496777 | 2.4:+25489614 | MS.gene039151:CDS |
CCAAAGGACTGGTCTCCAAC+CGG | 0.502102 | 2.4:+25488999 | MS.gene039151:CDS |
ACTCTAGCTGGTCTTCTAGC+TGG | 0.504630 | 2.4:+25489626 | MS.gene039151:CDS |
AGTCCTTTGGGTCGTAGATA+GGG | 0.509259 | 2.4:-25488986 | None:intergenic |
AATTGCAGGTCCGACTGGCT+TGG | 0.514526 | 2.4:+25489589 | MS.gene039151:intron |
TGCTTCTGGCAGGAAACAAA+AGG | 0.517286 | 2.4:+25487655 | MS.gene039151:CDS |
TTCAAAGTTGTTGCCAGTGG+TGG | 0.520838 | 2.4:+25487419 | MS.gene039151:CDS |
CAACTTTGAAGGGTCTTGAA+AGG | 0.521996 | 2.4:-25487406 | None:intergenic |
TTTAGGAACTGGAGGTGGCA+TGG | 0.542136 | 2.4:+25487613 | MS.gene039151:intron |
ATGGAAAAGATGCTTCTGGC+AGG | 0.542571 | 2.4:+25487645 | MS.gene039151:CDS |
GAAGATCTCTCAACTCTGAA+AGG | 0.546327 | 2.4:-25487365 | None:intergenic |
CCCTTCAAAGTTGTTGCCAG+TGG | 0.566315 | 2.4:+25487416 | MS.gene039151:CDS |
TTGAAGGGTCTTGAAAGGGC+AGG | 0.570355 | 2.4:-25487401 | None:intergenic |
CTAGCTGGTCTTCTAGCTGG+TGG | 0.579831 | 2.4:+25489629 | MS.gene039151:CDS |
CCACTGGCAACAACTTTGAA+GGG | 0.583591 | 2.4:-25487416 | None:intergenic |
GGTGGCATGGCCTTGCCAGA+TGG | 0.588864 | 2.4:+25487626 | MS.gene039151:CDS |
CTATCTACGACCCAAAGGAC+TGG | 0.590400 | 2.4:+25488988 | MS.gene039151:CDS |
ACCTCCAGTGTAGACATCAC+CGG | 0.624297 | 2.4:-25489018 | None:intergenic |
CAGCCCTATCTACGACCCAA+AGG | 0.645785 | 2.4:+25488983 | MS.gene039151:intron |
CCAACCGGTGATGTCTACAC+TGG | 0.647391 | 2.4:+25489014 | MS.gene039151:CDS |
AAGCACTTGTGTTGTAGACA+AGG | 0.648013 | 2.4:-25489658 | None:intergenic |
GCCCAGATAGCCAAGCCAGT+CGG | 0.648776 | 2.4:-25489599 | None:intergenic |
ACCGGTGATGTCTACACTGG+AGG | 0.649993 | 2.4:+25489017 | MS.gene039151:CDS |
CCAGTGTAGACATCACCGGT+TGG | 0.671824 | 2.4:-25489014 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATTTTTTTATTTTATTT+TGG | + | chr2.4:25487683-25487702 | MS.gene039151:intron | 0.0% |
!!! | AATTTAATAAACTTTTTTTG+AGG | + | chr2.4:25487782-25487801 | MS.gene039151:intron | 10.0% |
!!! | AATTTTGTTAATATGATTTT+AGG | + | chr2.4:25487596-25487615 | MS.gene039151:intron | 10.0% |
!!! | TAATTTAAACCTTTATTTAT+TGG | + | chr2.4:25488172-25488191 | MS.gene039151:intron | 10.0% |
!!! | TAGTTATAGATTATTTATTT+TGG | + | chr2.4:25487712-25487731 | MS.gene039151:intron | 10.0% |
!! | TATTTACTACCAATAAATAA+AGG | - | chr2.4:25488184-25488203 | None:intergenic | 15.0% |
!!! | AAATTACATTTTGAATAAGT+AGG | - | chr2.4:25488948-25488967 | None:intergenic | 15.0% |
!!! | CAATTTTTTTTTGTATAAAG+TGG | + | chr2.4:25489336-25489355 | MS.gene039151:intron | 15.0% |
!!! | CTTAATTTCAATTTTATTCA+GGG | + | chr2.4:25488514-25488533 | MS.gene039151:intron | 15.0% |
!!! | TAACAAATTTTATTAATTGC+AGG | + | chr2.4:25489575-25489594 | MS.gene039151:intron | 15.0% |
!!! | TCTTAATTTCAATTTTATTC+AGG | + | chr2.4:25488513-25488532 | MS.gene039151:intron | 15.0% |
!!! | TTATAGATTATTTATTTTGG+TGG | + | chr2.4:25487715-25487734 | MS.gene039151:intron | 15.0% |
!! | AATAATAGATAACAATGTTC+TGG | - | chr2.4:25488416-25488435 | None:intergenic | 20.0% |
!! | ACATGTTTAATAACATAGTT+AGG | + | chr2.4:25488636-25488655 | MS.gene039151:intron | 20.0% |
!! | ATTAAACATGTAAACAAAAC+TGG | - | chr2.4:25488627-25488646 | None:intergenic | 20.0% |
!! | ATTATCAAGATTTATTTCCA+TGG | + | chr2.4:25487888-25487907 | MS.gene039151:intron | 20.0% |
!! | CAATTGAACTAAGAAAAAAA+AGG | - | chr2.4:25487489-25487508 | None:intergenic | 20.0% |
!! | GATCTAATGAAATACATTAA+AGG | + | chr2.4:25488312-25488331 | MS.gene039151:intron | 20.0% |
!! | TGAAATAATTATGTCATTAG+AGG | + | chr2.4:25488659-25488678 | MS.gene039151:intron | 20.0% |
!! | TTATCAAGATTTATTTCCAT+GGG | + | chr2.4:25487889-25487908 | MS.gene039151:intron | 20.0% |
!!! | ATTTATTCAACTTTTAGCTT+TGG | + | chr2.4:25487956-25487975 | MS.gene039151:intron | 20.0% |
!!! | ATTTTTTTGTTTTAATCCTC+TGG | - | chr2.4:25487919-25487938 | None:intergenic | 20.0% |
!!! | GGAATTTTATGTATTAACAT+AGG | + | chr2.4:25487736-25487755 | MS.gene039151:intron | 20.0% |
!!! | TAAAGCAATGTTTTAAAAAC+TGG | + | chr2.4:25489129-25489148 | MS.gene039151:intron | 20.0% |
!!! | TTTCATTTTTTCTGAATTCT+AGG | + | chr2.4:25488600-25488619 | MS.gene039151:intron | 20.0% |
!!! | TTTTTAAAACATTGCTTTAG+AGG | - | chr2.4:25489128-25489147 | None:intergenic | 20.0% |
! | ATAAAATAGCATGAACTGTA+GGG | + | chr2.4:25489093-25489112 | MS.gene039151:intron | 25.0% |
! | GATAACTAAAATCTGACTTA+TGG | - | chr2.4:25487851-25487870 | None:intergenic | 25.0% |
! | TAGGTCAAAGTCTATATAAT+TGG | - | chr2.4:25488929-25488948 | None:intergenic | 25.0% |
! | TTAAACAATCATGACATAAG+TGG | + | chr2.4:25488694-25488713 | MS.gene039151:intron | 25.0% |
!! | TACCAAGTTTTTCATATAAG+AGG | - | chr2.4:25488017-25488036 | None:intergenic | 25.0% |
!! | TTCAATTTTATTCAGGGAAA+GGG | + | chr2.4:25488520-25488539 | MS.gene039151:intron | 25.0% |
!! | TTTCAATTTTATTCAGGGAA+AGG | + | chr2.4:25488519-25488538 | MS.gene039151:intron | 25.0% |
!! | TTTGTTATCATACTATTGCT+AGG | - | chr2.4:25489562-25489581 | None:intergenic | 25.0% |
!!! | AAGTAAGGTGGATTTTATAT+AGG | + | chr2.4:25488290-25488309 | MS.gene039151:intron | 25.0% |
!!! | AGGTAAGAAACTTCTTTTTT+TGG | + | chr2.4:25489037-25489056 | MS.gene039151:intron | 25.0% |
!!! | GGTAAGAAACTTCTTTTTTT+GGG | + | chr2.4:25489038-25489057 | MS.gene039151:intron | 25.0% |
!!! | GTTAATATGATTTTAGGAAC+TGG | + | chr2.4:25487602-25487621 | MS.gene039151:intron | 25.0% |
AAATCTTTGTATAGCCAACA+CGG | - | chr2.4:25489502-25489521 | None:intergenic | 30.0% | |
AACATCAAGTCATCAACAAT+AGG | - | chr2.4:25489258-25489277 | None:intergenic | 30.0% | |
AAGTAGAGAGTGATTCTTAA+GGG | + | chr2.4:25488127-25488146 | MS.gene039151:intron | 30.0% | |
AGAATAAATAGTAGACCAAG+AGG | - | chr2.4:25487982-25488001 | None:intergenic | 30.0% | |
ATGTTTATTTACTTCAGAGG+AGG | + | chr2.4:25489359-25489378 | MS.gene039151:intron | 30.0% | |
CAGAAAGCCCAAAAATATAA+GGG | - | chr2.4:25488446-25488465 | None:intergenic | 30.0% | |
CTCCTCTTATATGAAAAACT+TGG | + | chr2.4:25488012-25488031 | MS.gene039151:intron | 30.0% | |
GATAAAATAGCATGAACTGT+AGG | + | chr2.4:25489092-25489111 | MS.gene039151:intron | 30.0% | |
GCTCGTACATATAAAAAAGT+TGG | + | chr2.4:25488811-25488830 | MS.gene039151:intron | 30.0% | |
GTACTAATGAACTAACCATA+AGG | - | chr2.4:25487467-25487486 | None:intergenic | 30.0% | |
GTTTCTCACAAGATAAAGTA+AGG | + | chr2.4:25488275-25488294 | MS.gene039151:intron | 30.0% | |
TAAGTAGAGAGTGATTCTTA+AGG | + | chr2.4:25488126-25488145 | MS.gene039151:intron | 30.0% | |
TATGTATTAACATAGGCTTG+TGG | + | chr2.4:25487743-25487762 | MS.gene039151:intron | 30.0% | |
TCAGAAAGCCCAAAAATATA+AGG | - | chr2.4:25488447-25488466 | None:intergenic | 30.0% | |
TGGATGTTTATTTACTTCAG+AGG | + | chr2.4:25489356-25489375 | MS.gene039151:intron | 30.0% | |
TGTTTATTTACTTCAGAGGA+GGG | + | chr2.4:25489360-25489379 | MS.gene039151:intron | 30.0% | |
! | AGTTTTTCATATAAGAGGAG+AGG | - | chr2.4:25488012-25488031 | None:intergenic | 30.0% |
! | GAAAAACTTGGTAGTTTCTA+AGG | + | chr2.4:25488024-25488043 | MS.gene039151:intron | 30.0% |
! | GTTTTTCATATAAGAGGAGA+GGG | - | chr2.4:25488011-25488030 | None:intergenic | 30.0% |
! | TGAGTGTCCCTTATATTTTT+GGG | + | chr2.4:25488436-25488455 | MS.gene039151:intron | 30.0% |
! | TTGAGTGTCCCTTATATTTT+TGG | + | chr2.4:25488435-25488454 | MS.gene039151:intron | 30.0% |
! | TTGATAATTCGTAGTTCGAT+TGG | - | chr2.4:25487876-25487895 | None:intergenic | 30.0% |
!! | AATATGATTTTAGGAACTGG+AGG | + | chr2.4:25487605-25487624 | MS.gene039151:intron | 30.0% |
!! | TAGAGAGTAGTGTTTAGTTT+TGG | + | chr2.4:25489395-25489414 | MS.gene039151:intron | 30.0% |
AACCACATAGGCTAATTGAA+AGG | + | chr2.4:25488083-25488102 | MS.gene039151:intron | 35.0% | |
ATAAGTTCAACTGGTCGAAT+TGG | + | chr2.4:25489161-25489180 | MS.gene039151:intron | 35.0% | |
ATAGGGCTGCATAATAAAAC+AGG | - | chr2.4:25488972-25488991 | None:intergenic | 35.0% | |
ATTAAGACTGACACACCTTA+TGG | + | chr2.4:25487449-25487468 | MS.gene039151:CDS | 35.0% | |
CAAGACTAATGTCTCATGTT+TGG | + | chr2.4:25488776-25488795 | MS.gene039151:intron | 35.0% | |
TAAGTTCAACTGGTCGAATT+GGG | + | chr2.4:25489162-25489181 | MS.gene039151:intron | 35.0% | |
TACCAGTTTGTGGACAAATA+CGG | + | chr2.4:25488547-25488566 | MS.gene039151:CDS | 35.0% | |
TCTCACAAGATAAAGTAAGG+TGG | + | chr2.4:25488278-25488297 | MS.gene039151:intron | 35.0% | |
! | AAATACGGTGCTAATGTTGA+TGG | + | chr2.4:25488562-25488581 | MS.gene039151:CDS | 35.0% |
! | AACTTTGAAGGGTCTTGAAA+GGG | - | chr2.4:25487408-25487427 | None:intergenic | 35.0% |
! | ATCCTTTCAATTAGCCTATG+TGG | - | chr2.4:25488088-25488107 | None:intergenic | 35.0% |
! | CATGAGCGAAGATAGTTTTT+AGG | - | chr2.4:25489426-25489445 | None:intergenic | 35.0% |
! | GACTAATGTCTCTCATGTTT+TGG | + | chr2.4:25488875-25488894 | MS.gene039151:intron | 35.0% |
! | TTTTGGGCTTTCTGAATTGT+TGG | + | chr2.4:25488452-25488471 | MS.gene039151:intron | 35.0% |
!! | CTTGGTAGTTTCTAAGGTAT+TGG | + | chr2.4:25488030-25488049 | MS.gene039151:intron | 35.0% |
AAGCACTTGTGTTGTAGACA+AGG | - | chr2.4:25489661-25489680 | None:intergenic | 40.0% | |
AATTGGGAATCGTCTATCAC+TGG | + | chr2.4:25489178-25489197 | MS.gene039151:intron | 40.0% | |
ATCGAGCTGATAAGTTCAAC+TGG | + | chr2.4:25489152-25489171 | MS.gene039151:intron | 40.0% | |
CAACTATTTCAAGACCGTGT+TGG | + | chr2.4:25489485-25489504 | MS.gene039151:intron | 40.0% | |
CCTATGTGGTTGAGATGTTA+AGG | - | chr2.4:25488074-25488093 | None:intergenic | 40.0% | |
CCTTAACATCTCAACCACAT+AGG | + | chr2.4:25488071-25488090 | MS.gene039151:intron | 40.0% | |
GAAGATCTCTCAACTCTGAA+AGG | - | chr2.4:25487368-25487387 | None:intergenic | 40.0% | |
GCATGAACTGTAGGGATTTA+TGG | + | chr2.4:25489101-25489120 | MS.gene039151:intron | 40.0% | |
GTTGAGAGATCTTCAGTTAG+AGG | + | chr2.4:25487374-25487393 | MS.gene039151:CDS | 40.0% | |
TTATTAATTGCAGGTCCGAC+TGG | + | chr2.4:25489584-25489603 | MS.gene039151:intron | 40.0% | |
! | CAACTTTGAAGGGTCTTGAA+AGG | - | chr2.4:25487409-25487428 | None:intergenic | 40.0% |
! | GGCTTTCTGAATTGTTGGTT+TGG | + | chr2.4:25488457-25488476 | MS.gene039151:intron | 40.0% |
! | GTGCTAATGTTGATGGATAC+AGG | + | chr2.4:25488569-25488588 | MS.gene039151:CDS | 40.0% |
!! | AAAGGGTGTTTACCAGTTTG+TGG | + | chr2.4:25488537-25488556 | MS.gene039151:CDS | 40.0% |
!! | ATGATTTTAGGAACTGGAGG+TGG | + | chr2.4:25487608-25487627 | MS.gene039151:intron | 40.0% |
!!! | AACTTTTAGCTTTGGCCTCT+TGG | + | chr2.4:25487964-25487983 | MS.gene039151:intron | 40.0% |
ACCACTGGCAACAACTTTGA+AGG | - | chr2.4:25487420-25487439 | None:intergenic | 45.0% | |
AGTCCTTTGGGTCGTAGATA+GGG | - | chr2.4:25488989-25489008 | None:intergenic | 45.0% | |
ATGGAAAAGATGCTTCTGGC+AGG | + | chr2.4:25487645-25487664 | MS.gene039151:CDS | 45.0% | |
CACCGTATTTGTCCACAAAC+TGG | - | chr2.4:25488552-25488571 | None:intergenic | 45.0% | |
CCACTGGCAACAACTTTGAA+GGG | - | chr2.4:25487419-25487438 | None:intergenic | 45.0% | |
CCAGATGGAAAAGATGCTTC+TGG | + | chr2.4:25487641-25487660 | MS.gene039151:CDS | 45.0% | |
CTTAATCTTCTTGCCACCAC+TGG | - | chr2.4:25487435-25487454 | None:intergenic | 45.0% | |
TATTTCCATGGGAACACCAG+AGG | + | chr2.4:25487900-25487919 | MS.gene039151:intron | 45.0% | |
TGCTTCTGGCAGGAAACAAA+AGG | + | chr2.4:25487655-25487674 | MS.gene039151:CDS | 45.0% | |
TTAATCCTCTGGTGTTCCCA+TGG | - | chr2.4:25487908-25487927 | None:intergenic | 45.0% | |
TTCAAAGTTGTTGCCAGTGG+TGG | + | chr2.4:25487419-25487438 | MS.gene039151:CDS | 45.0% | |
! | AGCATCTTTTCCATCTGGCA+AGG | - | chr2.4:25487639-25487658 | None:intergenic | 45.0% |
! | CTCTCAACTCTGAAAGGAGT+TGG | - | chr2.4:25487362-25487381 | None:intergenic | 45.0% |
! | GGAATCGTCTATCACTGGTT+CGG | + | chr2.4:25489183-25489202 | MS.gene039151:intron | 45.0% |
!!! | CCAGAAGCATCTTTTCCATC+TGG | - | chr2.4:25487644-25487663 | None:intergenic | 45.0% |
ACCTCCAGTGTAGACATCAC+CGG | - | chr2.4:25489021-25489040 | None:intergenic | 50.0% | |
ATCTGGGCAGTAACTCTAGC+TGG | + | chr2.4:25489614-25489633 | MS.gene039151:CDS | 50.0% | |
CAGTCCTTTGGGTCGTAGAT+AGG | - | chr2.4:25488990-25489009 | None:intergenic | 50.0% | |
CCCTTCAAAGTTGTTGCCAG+TGG | + | chr2.4:25487416-25487435 | MS.gene039151:CDS | 50.0% | |
CTATCTACGACCCAAAGGAC+TGG | + | chr2.4:25488988-25489007 | MS.gene039151:CDS | 50.0% | |
TTGAAGGGTCTTGAAAGGGC+AGG | - | chr2.4:25487404-25487423 | None:intergenic | 50.0% | |
TTTAGGAACTGGAGGTGGCA+TGG | + | chr2.4:25487613-25487632 | MS.gene039151:intron | 50.0% | |
!! | ACTCTAGCTGGTCTTCTAGC+TGG | + | chr2.4:25489626-25489645 | MS.gene039151:CDS | 50.0% |
ACCGGTGATGTCTACACTGG+AGG | + | chr2.4:25489017-25489036 | MS.gene039151:CDS | 55.0% | |
CAGCCCTATCTACGACCCAA+AGG | + | chr2.4:25488983-25489002 | MS.gene039151:intron | 55.0% | |
CCAACCGGTGATGTCTACAC+TGG | + | chr2.4:25489014-25489033 | MS.gene039151:CDS | 55.0% | |
CCAGTGTAGACATCACCGGT+TGG | - | chr2.4:25489017-25489036 | None:intergenic | 55.0% | |
CGGTTGGAGACCAGTCCTTT+GGG | - | chr2.4:25489001-25489020 | None:intergenic | 55.0% | |
! | AATTGCAGGTCCGACTGGCT+TGG | + | chr2.4:25489589-25489608 | MS.gene039151:intron | 55.0% |
!! | CCAAAGGACTGGTCTCCAAC+CGG | + | chr2.4:25488999-25489018 | MS.gene039151:CDS | 55.0% |
!! | CTAGCTGGTCTTCTAGCTGG+TGG | + | chr2.4:25489629-25489648 | MS.gene039151:CDS | 55.0% |
!! | TCCGACTGGCTTGGCTATCT+GGG | + | chr2.4:25489598-25489617 | MS.gene039151:CDS | 55.0% |
CCGGTTGGAGACCAGTCCTT+TGG | - | chr2.4:25489002-25489021 | None:intergenic | 60.0% | |
GCCCAGATAGCCAAGCCAGT+CGG | - | chr2.4:25489602-25489621 | None:intergenic | 60.0% | |
!! | GTCCGACTGGCTTGGCTATC+TGG | + | chr2.4:25489597-25489616 | MS.gene039151:CDS | 60.0% |
! | GGTGGCATGGCCTTGCCAGA+TGG | + | chr2.4:25487626-25487645 | MS.gene039151:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 25487323 | 25489691 | 25487323 | ID=MS.gene039151 |
chr2.4 | mRNA | 25487323 | 25489691 | 25487323 | ID=MS.gene039151.t1;Parent=MS.gene039151 |
chr2.4 | exon | 25487323 | 25487470 | 25487323 | ID=MS.gene039151.t1.exon1;Parent=MS.gene039151.t1 |
chr2.4 | CDS | 25487323 | 25487470 | 25487323 | ID=cds.MS.gene039151.t1;Parent=MS.gene039151.t1 |
chr2.4 | exon | 25487618 | 25487676 | 25487618 | ID=MS.gene039151.t1.exon2;Parent=MS.gene039151.t1 |
chr2.4 | CDS | 25487618 | 25487676 | 25487618 | ID=cds.MS.gene039151.t1;Parent=MS.gene039151.t1 |
chr2.4 | exon | 25488535 | 25488590 | 25488535 | ID=MS.gene039151.t1.exon3;Parent=MS.gene039151.t1 |
chr2.4 | CDS | 25488535 | 25488590 | 25488535 | ID=cds.MS.gene039151.t1;Parent=MS.gene039151.t1 |
chr2.4 | exon | 25488986 | 25489038 | 25488986 | ID=MS.gene039151.t1.exon4;Parent=MS.gene039151.t1 |
chr2.4 | CDS | 25488986 | 25489038 | 25488986 | ID=cds.MS.gene039151.t1;Parent=MS.gene039151.t1 |
chr2.4 | exon | 25489597 | 25489691 | 25489597 | ID=MS.gene039151.t1.exon5;Parent=MS.gene039151.t1 |
chr2.4 | CDS | 25489597 | 25489691 | 25489597 | ID=cds.MS.gene039151.t1;Parent=MS.gene039151.t1 |
Gene Sequence |
Protein sequence |