AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene045356


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045356.t1 MTR_3g084340 99.175 485 4 0 1 485 1 485 0.0 1001
MS.gene045356.t1 MTR_8g083090 91.753 485 40 0 1 485 1 485 0.0 919
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene045356.t1 AT4G13940 91.134 485 43 0 1 485 1 485 0.0 919
MS.gene045356.t1 AT3G23810 89.897 485 49 0 1 485 1 485 0.0 904
MS.gene045356.t1 AT4G13940 82.268 485 41 1 1 485 1 440 0.0 814
MS.gene045356.t1 AT4G13940 89.532 363 38 0 123 485 2 364 0.0 693
MS.gene045356.t1 AT4G13940 91.558 308 26 0 1 308 1 308 0.0 573

Find 152 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCACTTCAAGCTCTTA+TGG 0.246520 3.4:+78979784 MS.gene045356:CDS
CAAGACAATGATGCCAGTTT+TGG 0.273063 3.4:-78980044 None:intergenic
CATGATAATGTCTTTGTTAC+CGG 0.281658 3.4:-78979870 None:intergenic
TTTCCTTCCACAACTCAATC+TGG 0.282987 3.4:-78980153 None:intergenic
GCTCTGAACGTGCTCTTGAC+TGG 0.284203 3.4:+78978594 MS.gene045356:CDS
TTCATCTTCTGGTACCTCTT+AGG 0.306451 3.4:-78978800 None:intergenic
CTCTGAACGTGCTCTTGACT+GGG 0.308933 3.4:+78978595 MS.gene045356:CDS
CAATTCTAGTCTTCATCTTC+TGG 0.309837 3.4:-78978811 None:intergenic
ATCCATCGCAATGGCGTTGC+TGG 0.321329 3.4:+78978226 None:intergenic
CGAAGGTCGTTTGATGAACT+TGG 0.331691 3.4:+78980069 MS.gene045356:CDS
CTTCAGCCTTAACACCTTCA+TGG 0.332449 3.4:-78978676 None:intergenic
GATGTAATCTGCCTGATCTT+TGG 0.337935 3.4:-78980284 None:intergenic
AATGCCATTGTCTGCAATAT+TGG 0.338131 3.4:+78979920 MS.gene045356:CDS
ATGTCCTGCCGAACCGAATT+CGG 0.339299 3.4:+78978353 MS.gene045356:CDS
AGAGCTTGAAGTGCACAAAT+TGG 0.344753 3.4:-78979779 None:intergenic
CTTCAAACCATCTCTGATAA+TGG 0.351075 3.4:-78978771 None:intergenic
CTTCAGCGCCGAGAGCGGTT+AGG 0.352649 3.4:-78978454 None:intergenic
GGAGCATGACATGACGAAAC+TGG 0.354812 3.4:-78980110 None:intergenic
ATGAACTTGGGATGTGCTAC+TGG 0.363624 3.4:+78980082 MS.gene045356:CDS
CTGTAGTGGGCAGGCTTGTA+TGG 0.371722 3.4:-78980325 None:intergenic
GTTGCTGTTGTATGTGGTTA+TGG 0.380098 3.4:+78979686 MS.gene045356:CDS
CGTGCTCTTGACTGGGGTCC+TGG 0.385588 3.4:+78978602 MS.gene045356:CDS
ACATACAACAGCAACCTTTC+CGG 0.388605 3.4:-78979678 None:intergenic
GGGTTGGGATGGACCGAATT+CGG 0.390190 3.4:-78978366 None:intergenic
GCTCTTCATCTTGGCCAGCT+TGG 0.394343 3.4:+78980241 MS.gene045356:CDS
GACATCTTTGTTACCACAAC+CGG 0.395286 3.4:+78979851 MS.gene045356:CDS
TTGTGCTGCTGCATTGAAAC+AGG 0.399578 3.4:+78979724 MS.gene045356:CDS
CTTGACTGGGGTCCTGGTGG+TGG 0.403597 3.4:+78978608 MS.gene045356:CDS
TCTAGCACCTTTGAAGGGTT+GGG 0.410769 3.4:-78978381 None:intergenic
AAGGTTGCTGCTCTTCATCT+TGG 0.415226 3.4:+78980232 MS.gene045356:CDS
TTTCGATGAGGACGGCGGTT+TGG 0.421389 3.4:-78978430 None:intergenic
TTCTAGCACCTTTGAAGGGT+TGG 0.427916 3.4:-78978382 None:intergenic
TTCAGCGCCGAGAGCGGTTA+GGG 0.433864 3.4:-78978453 None:intergenic
TTTGATCCATGAAGGTGTTA+AGG 0.439226 3.4:+78978670 MS.gene045356:CDS
GGTGATTCTAGCACCTTTGA+AGG 0.443699 3.4:-78978387 None:intergenic
GAGACGGCCGAAGTCGGCTT+GGG 0.446562 3.4:-78978294 None:intergenic
TTGTGGAAGGAAAAGACTTC+CGG 0.448452 3.4:+78980163 MS.gene045356:CDS
TGCCTGATCTTTGGAGAGCT+TGG 0.448946 3.4:-78980275 None:intergenic
GCTACTGATGTGATGATTGC+CGG 0.449909 3.4:+78979659 MS.gene045356:CDS
GAGTACCACTGGCTTGCATC+TGG 0.455608 3.4:-78978877 None:intergenic
AAGATGAAGACTAGAATTGT+TGG 0.457319 3.4:+78978815 MS.gene045356:CDS
CACTAGCGGCCGCGAATACA+AGG 0.463037 3.4:+78978259 MS.gene045356:CDS
GTAGCTCTCATCAGTCCATC+GGG 0.463967 3.4:-78979641 None:intergenic
CACCAAGCTCTCCAAAGATC+AGG 0.467894 3.4:+78980273 MS.gene045356:CDS
GGCTTGTATGGACCCTCAAC+AGG 0.474052 3.4:-78980313 None:intergenic
TACATCAGTGTGCCTGTTGA+GGG 0.474583 3.4:+78980301 MS.gene045356:CDS
TTCCTTCCACAACTCAATCT+GGG 0.478489 3.4:-78980152 None:intergenic
AGGTCTTCAAGTCTTGACTT+TGG 0.482657 3.4:+78979808 MS.gene045356:CDS
CTCTCGGCGCTGAAGTCCGT+TGG 0.484320 3.4:+78978462 MS.gene045356:CDS
CAAGTTCATCAAACGACCTT+CGG 0.485613 3.4:-78980068 None:intergenic
AATGTCTTTGTTACCGGTTG+TGG 0.486256 3.4:-78979864 None:intergenic
AAAACCCATCTGTCAGTTTG+TGG 0.488904 3.4:-78980013 None:intergenic
CGAGACGGCCGAAGTCGGCT+TGG 0.488999 3.4:-78978295 None:intergenic
GTGAAACTCTTCAAGAGTAT+TGG 0.491446 3.4:+78978567 MS.gene045356:CDS
AAACTACCACTGGTGTTAAG+AGG 0.493018 3.4:+78978849 MS.gene045356:CDS
TCTTCAAGTCTTGACTTTGG+AGG 0.494059 3.4:+78979811 MS.gene045356:CDS
TTGAGTGGAGAAGATGTTGC+AGG 0.498069 3.4:-78978489 None:intergenic
GTTCTTACCATTATCAGAGA+TGG 0.499328 3.4:+78978764 MS.gene045356:CDS
GATTGTCATGTGAAGTGAAC+CGG 0.499367 3.4:-78978408 None:intergenic
GCCTAAGCACCTTGATGAGA+AGG 0.499877 3.4:+78980213 MS.gene045356:CDS
CAAAACTGGCATCATTGTCT+TGG 0.506187 3.4:+78980045 MS.gene045356:CDS
GAGCATGACATGACGAAACT+GGG 0.509921 3.4:-78980109 None:intergenic
CATACAAGCCTGCCCACTAC+AGG 0.511416 3.4:+78980326 MS.gene045356:CDS
ATTGTGATGCGCTTCACACC+AGG 0.516815 3.4:-78979986 None:intergenic
GGGATGGACCGAATTCGGTT+CGG 0.518576 3.4:-78978361 None:intergenic
ATCGAAACCCTAACCGCTCT+CGG 0.519237 3.4:+78978446 MS.gene045356:CDS
TGTCCTTGACCTTGTATTCG+CGG 0.519525 3.4:-78978268 None:intergenic
ACAGCGCCGCCGTGTTCGCA+TGG 0.523074 3.4:+78978540 MS.gene045356:CDS
TTCCGGCAAGTATGAAAAGA+AGG 0.523649 3.4:+78980180 MS.gene045356:CDS
ACTCAATCTGGGCAATGACT+TGG 0.524880 3.4:-78980141 None:intergenic
CCATCATCAACGATGAGATC+TGG 0.525149 3.4:-78978632 None:intergenic
GTCACGAGCGATGGCAGCAG+CGG 0.527010 3.4:-78978519 None:intergenic
GACATGTCCCAAGCCGACTT+CGG 0.530150 3.4:+78978287 MS.gene045356:CDS
TAACAGTTTGACAACTTGTA+CGG 0.530587 3.4:+78979602 MS.gene045356:intron
GAGTCATTGACATTGATAGC+AGG 0.532386 3.4:-78978908 None:intergenic
CTTGTATTCGCGGCCGCTAG+TGG 0.534197 3.4:-78978258 None:intergenic
GGCATCATTGTCTTGGCCGA+AGG 0.539009 3.4:+78980052 MS.gene045356:CDS
GTATGTGGTTATGGAGATGT+TGG 0.539146 3.4:+78979695 MS.gene045356:CDS
GATCATCTCAATACCTGTAG+TGG 0.539935 3.4:-78980339 None:intergenic
TAGACCGGGCATTTCGACTT+CGG 0.540521 3.4:-78978330 None:intergenic
TTATCAGTGGAAGAAGGATC+AGG 0.540967 3.4:-78978725 None:intergenic
TGCCGTCACTCACTCCCCGA+TGG 0.543995 3.4:+78979626 MS.gene045356:CDS
TTCAAAGGTGCTAGAATCAC+CGG 0.545328 3.4:+78978389 MS.gene045356:CDS
GACAATGAAATTGACATGCA+TGG 0.548002 3.4:+78979950 MS.gene045356:CDS
GAGCAGCAACCTTCTCATCA+AGG 0.548483 3.4:-78980222 None:intergenic
AGTAGCTCTCATCAGTCCAT+CGG 0.549778 3.4:-78979642 None:intergenic
TGGACCGAATTCGGTTCGGC+AGG 0.550451 3.4:-78978357 None:intergenic
AAACTCTTCAAGAGTATTGG+TGG 0.555528 3.4:+78978570 MS.gene045356:CDS
GGCAATGACTTGGTTGGTGA+AGG 0.555648 3.4:-78980131 None:intergenic
TTACATCAGTGTGCCTGTTG+AGG 0.557257 3.4:+78980300 MS.gene045356:CDS
TGGTGAGCTTAGCTCCAAGC+TGG 0.561241 3.4:-78980255 None:intergenic
GATTTCGAGACGGCCGAAGT+CGG 0.561398 3.4:-78978300 None:intergenic
GAAGGTCGTTTGATGAACTT+GGG 0.567387 3.4:+78980070 MS.gene045356:CDS
TGAAGGTGTTAAGGCTGAAG+AGG 0.568244 3.4:+78978679 MS.gene045356:CDS
CCAGATCTCATCGTTGATGA+TGG 0.568308 3.4:+78978632 MS.gene045356:CDS
TGATGTGATGATTGCCGGAA+AGG 0.572516 3.4:+78979664 MS.gene045356:CDS
GTCCATCGGGGAGTGAGTGA+CGG 0.572655 3.4:-78979628 None:intergenic
GTTCGGCAGGACATTAGACC+GGG 0.573271 3.4:-78978344 None:intergenic
GGAAAGGTTGCTGTTGTATG+TGG 0.573631 3.4:+78979680 MS.gene045356:CDS
GAGCGATGGCAGCAGCGGCG+TGG 0.575591 3.4:-78978514 None:intergenic
GGTTCGGCAGGACATTAGAC+CGG 0.577241 3.4:-78978345 None:intergenic
TAAGCCACAAACTGACAGAT+GGG 0.577992 3.4:+78980009 MS.gene045356:CDS
GCACCTTTGAAGGGTTGGGA+TGG 0.581733 3.4:-78978377 None:intergenic
AGGGAACAAAAGAGTACCAC+TGG 0.581899 3.4:-78978888 None:intergenic
GTTTGAAGACTGATCCTAAG+AGG 0.582975 3.4:+78978786 MS.gene045356:CDS
GCACTTCAAGCTCTTATGGA+AGG 0.583496 3.4:+78979788 MS.gene045356:CDS
TGCCCAGATTGAGTTGTGGA+AGG 0.584564 3.4:+78980150 MS.gene045356:CDS
AGCAGCGGCGTGGTCTTGAG+TGG 0.585227 3.4:-78978504 None:intergenic
CGGTAACAAAGACATTATCA+TGG 0.586819 3.4:+78979871 MS.gene045356:CDS
TCAGCATTATCAGTGGAAGA+AGG 0.586864 3.4:-78978731 None:intergenic
ACCTTCTCATCAAGGTGCTT+AGG 0.587574 3.4:-78980214 None:intergenic
CTCGCCGAAGTCGAAATGCC+CGG 0.588811 3.4:+78978326 MS.gene045356:CDS
GTATTCGCGGCCGCTAGTGG+TGG 0.589620 3.4:-78978255 None:intergenic
GGTCCATCCCAACCCTTCAA+AGG 0.590417 3.4:+78978374 MS.gene045356:CDS
GTGATTCTAGCACCTTTGAA+GGG 0.592015 3.4:-78978386 None:intergenic
ATGAGATCTGGTCCACCACC+AGG 0.593938 3.4:-78978620 None:intergenic
ATCATCTCAATACCTGTAGT+GGG 0.596481 3.4:-78980338 None:intergenic
TTAAGCCACAAACTGACAGA+TGG 0.599504 3.4:+78980008 MS.gene045356:CDS
TGGTTATGGAGATGTTGGCA+AGG 0.602291 3.4:+78979700 MS.gene045356:CDS
TTCACCTTTCCATGCGAACA+CGG 0.604306 3.4:-78978549 None:intergenic
GGCGGCGCTGTCACGAGCGA+TGG 0.605675 3.4:-78978528 None:intergenic
GCCGCCGTGTTCGCATGGAA+AGG 0.609488 3.4:+78978545 MS.gene045356:CDS
AGTCATTGACATTGATAGCA+GGG 0.617293 3.4:-78978907 None:intergenic
GGTTAGGGTTTCGATGAGGA+CGG 0.623279 3.4:-78978438 None:intergenic
CGGCCGCGAATACAAGGTCA+AGG 0.626311 3.4:+78978265 MS.gene045356:CDS
TCATTGCCCAGATTGAGTTG+TGG 0.630377 3.4:+78980146 MS.gene045356:CDS
CTGCATCTCAGCATTATCAG+TGG 0.631115 3.4:-78978738 None:intergenic
GGTTATGGAGATGTTGGCAA+GGG 0.635999 3.4:+78979701 MS.gene045356:CDS
TGACTCTGTTACCAAGAGCA+AGG 0.637085 3.4:+78978925 MS.gene045356:CDS
GGTAACAAAGATGTCAGCCT+CGG 0.637559 3.4:-78979843 None:intergenic
CGGCGAGCTCGATTTCGAGA+CGG 0.639311 3.4:-78978310 None:intergenic
CTGGTTGAAACCACCACTAG+CGG 0.640235 3.4:+78978245 MS.gene045356:CDS
GCTCTTGACTGGGGTCCTGG+TGG 0.646422 3.4:+78978605 MS.gene045356:CDS
AATCTGGGCAATGACTTGGT+TGG 0.646442 3.4:-78980137 None:intergenic
AGATGTTGCAGGAACACCAA+CGG 0.647065 3.4:-78978478 None:intergenic
TTGTGATGCGCTTCACACCA+GGG 0.649814 3.4:-78979985 None:intergenic
GTGACCAATATTGCAGACAA+TGG 0.654212 3.4:-78979924 None:intergenic
CATGGACTTGAGACTTACCC+TGG 0.655927 3.4:+78979968 MS.gene045356:CDS
GATCTCATCGTTGATGATGG+TGG 0.656347 3.4:+78978635 MS.gene045356:CDS
GTAAAGCCTCTTAACACCAG+TGG 0.656682 3.4:-78978855 None:intergenic
TGTGCTGCTGCATTGAAACA+GGG 0.663521 3.4:+78979725 MS.gene045356:CDS
TCTGAACGTGCTCTTGACTG+GGG 0.665456 3.4:+78978596 MS.gene045356:CDS
ACGGACTTCAGCGCCGAGAG+CGG 0.666573 3.4:-78978459 None:intergenic
CTTTACCAGATGCAAGCCAG+TGG 0.671517 3.4:+78978872 MS.gene045356:CDS
TTTGGAGGATGTTATCTCCG+AGG 0.672766 3.4:+78979826 MS.gene045356:CDS
TAGGGTTTCGATGAGGACGG+CGG 0.676084 3.4:-78978435 None:intergenic
ACCTTTCCATGCGAACACGG+CGG 0.684766 3.4:-78978546 None:intergenic
GTTTCTGAAGAAACTACCAC+TGG 0.697565 3.4:+78978839 MS.gene045356:CDS
AGCATGACATGACGAAACTG+GGG 0.716423 3.4:-78980108 None:intergenic
GAGCGGTTAGGGTTTCGATG+AGG 0.727757 3.4:-78978442 None:intergenic
GCTGCTGCATTGAAACAGGG+TGG 0.748869 3.4:+78979728 MS.gene045356:CDS
TAGCTCTCATCAGTCCATCG+GGG 0.769557 3.4:-78979640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAGTTTAATTGTCTA+GGG + chr3.4:78979460-78979479 MS.gene045356:intron 15.0%
!!! TTTTAAAAGTTTAATTGTCT+AGG + chr3.4:78979459-78979478 MS.gene045356:intron 15.0%
!!! ATTAATCAGTTTTTTGTGTT+TGG + chr3.4:78978983-78979002 MS.gene045356:intron 20.0%
!!! TCAGTTATTTATTAGTTTGT+TGG + chr3.4:78979487-78979506 MS.gene045356:intron 20.0%
!!! TTCTTTCTTGTTTCTATTTT+TGG + chr3.4:78978958-78978977 MS.gene045356:intron 20.0%
! AAAAAATTATACCTTGCTCT+TGG - chr3.4:78978939-78978958 None:intergenic 25.0%
! TGAAATTGCTAAATTGAGAT+GGG + chr3.4:78979095-78979114 MS.gene045356:intron 25.0%
! TTGAAATTGCTAAATTGAGA+TGG + chr3.4:78979094-78979113 MS.gene045356:intron 25.0%
AAGATGAAGACTAGAATTGT+TGG + chr3.4:78978815-78978834 MS.gene045356:CDS 30.0%
CTTGGAATTGTCAAAAGAAA+AGG + chr3.4:78979294-78979313 MS.gene045356:intron 30.0%
GAATTGTCAAAAGAAAAGGT+TGG + chr3.4:78979298-78979317 MS.gene045356:intron 30.0%
TAACAGTTTGACAACTTGTA+CGG + chr3.4:78979602-78979621 MS.gene045356:intron 30.0%
TGTGATGTCATTATAGATCT+TGG - chr3.4:78979406-78979425 None:intergenic 30.0%
TTTGGTAGATCCCATAAAAT+GGG + chr3.4:78979118-78979137 MS.gene045356:intron 30.0%
TTTGTTGGAGAACAATAAGT+TGG + chr3.4:78979502-78979521 MS.gene045356:intron 30.0%
! AATAACACTCTCCCATTTTA+TGG - chr3.4:78979132-78979151 None:intergenic 30.0%
! ATAACACTCTCCCATTTTAT+GGG - chr3.4:78979131-78979150 None:intergenic 30.0%
! CATGATAATGTCTTTGTTAC+CGG - chr3.4:78979873-78979892 None:intergenic 30.0%
AATGCCATTGTCTGCAATAT+TGG + chr3.4:78979920-78979939 MS.gene045356:CDS 35.0%
CGGTAACAAAGACATTATCA+TGG + chr3.4:78979871-78979890 MS.gene045356:CDS 35.0%
CTTCAAACCATCTCTGATAA+TGG - chr3.4:78978774-78978793 None:intergenic 35.0%
GACAATGAAATTGACATGCA+TGG + chr3.4:78979950-78979969 MS.gene045356:CDS 35.0%
GTTAGACAACATCACACAAA+AGG - chr3.4:78979560-78979579 None:intergenic 35.0%
GTTCTTACCATTATCAGAGA+TGG + chr3.4:78978764-78978783 MS.gene045356:CDS 35.0%
GTTTGGTAGATCCCATAAAA+TGG + chr3.4:78979117-78979136 MS.gene045356:intron 35.0%
! AGTCATTGACATTGATAGCA+GGG - chr3.4:78978910-78978929 None:intergenic 35.0%
! CAATTCTAGTCTTCATCTTC+TGG - chr3.4:78978814-78978833 None:intergenic 35.0%
! GACATCACACATTTGCTAAT+TGG + chr3.4:78979417-78979436 MS.gene045356:intron 35.0%
! GTGAAACTCTTCAAGAGTAT+TGG + chr3.4:78978567-78978586 MS.gene045356:CDS 35.0%
! TACCTTCTTTTCATACTTGC+CGG - chr3.4:78980185-78980204 None:intergenic 35.0%
! TGTCAAAAGAAAAGGTTGGT+TGG + chr3.4:78979302-78979321 MS.gene045356:intron 35.0%
! TTGCTAAATTGAGATGGGTT+TGG + chr3.4:78979100-78979119 MS.gene045356:intron 35.0%
!! AAACTCTTCAAGAGTATTGG+TGG + chr3.4:78978570-78978589 MS.gene045356:CDS 35.0%
!! TTTGATCCATGAAGGTGTTA+AGG + chr3.4:78978670-78978689 MS.gene045356:CDS 35.0%
AAAACCCATCTGTCAGTTTG+TGG - chr3.4:78980016-78980035 None:intergenic 40.0%
ACATACAACAGCAACCTTTC+CGG - chr3.4:78979681-78979700 None:intergenic 40.0%
AGAGCTTGAAGTGCACAAAT+TGG - chr3.4:78979782-78979801 None:intergenic 40.0%
AGGTCTTCAAGTCTTGACTT+TGG + chr3.4:78979808-78979827 MS.gene045356:CDS 40.0%
CAAAACTGGCATCATTGTCT+TGG + chr3.4:78980045-78980064 MS.gene045356:CDS 40.0%
CAAGTTCATCAAACGACCTT+CGG - chr3.4:78980071-78980090 None:intergenic 40.0%
GAAGGTCGTTTGATGAACTT+GGG + chr3.4:78980070-78980089 MS.gene045356:CDS 40.0%
GACATCTTTGTTACCACAAC+CGG + chr3.4:78979851-78979870 MS.gene045356:CDS 40.0%
GATGTAATCTGCCTGATCTT+TGG - chr3.4:78980287-78980306 None:intergenic 40.0%
GATTGTCATGTGAAGTGAAC+CGG - chr3.4:78978411-78978430 None:intergenic 40.0%
GTATGTGGTTATGGAGATGT+TGG + chr3.4:78979695-78979714 MS.gene045356:CDS 40.0%
GTGACCAATATTGCAGACAA+TGG - chr3.4:78979927-78979946 None:intergenic 40.0%
GTGATTCTAGCACCTTTGAA+GGG - chr3.4:78978389-78978408 None:intergenic 40.0%
GTTTGAAGACTGATCCTAAG+AGG + chr3.4:78978786-78978805 MS.gene045356:CDS 40.0%
TAAGCCACAAACTGACAGAT+GGG + chr3.4:78980009-78980028 MS.gene045356:CDS 40.0%
TCAGCATTATCAGTGGAAGA+AGG - chr3.4:78978734-78978753 None:intergenic 40.0%
TCTTCAAGTCTTGACTTTGG+AGG + chr3.4:78979811-78979830 MS.gene045356:CDS 40.0%
TTAAGCCACAAACTGACAGA+TGG + chr3.4:78980008-78980027 MS.gene045356:CDS 40.0%
TTATCAGTGGAAGAAGGATC+AGG - chr3.4:78978728-78978747 None:intergenic 40.0%
TTCATCTTCTGGTACCTCTT+AGG - chr3.4:78978803-78978822 None:intergenic 40.0%
TTCCGGCAAGTATGAAAAGA+AGG + chr3.4:78980180-78980199 MS.gene045356:CDS 40.0%
TTCCTTCCACAACTCAATCT+GGG - chr3.4:78980155-78980174 None:intergenic 40.0%
TTGTGCACTTCAAGCTCTTA+TGG + chr3.4:78979784-78979803 MS.gene045356:CDS 40.0%
TTGTGGAAGGAAAAGACTTC+CGG + chr3.4:78980163-78980182 MS.gene045356:CDS 40.0%
TTTCCTTCCACAACTCAATC+TGG - chr3.4:78980156-78980175 None:intergenic 40.0%
! AAACTACCACTGGTGTTAAG+AGG + chr3.4:78978849-78978868 MS.gene045356:CDS 40.0%
! AATGTCTTTGTTACCGGTTG+TGG - chr3.4:78979867-78979886 None:intergenic 40.0%
! CAAGACAATGATGCCAGTTT+TGG - chr3.4:78980047-78980066 None:intergenic 40.0%
! GAGTCATTGACATTGATAGC+AGG - chr3.4:78978911-78978930 None:intergenic 40.0%
! GTTACGCTTTTGATCCATGA+AGG + chr3.4:78978662-78978681 MS.gene045356:CDS 40.0%
! GTTGCTGTTGTATGTGGTTA+TGG + chr3.4:78979686-78979705 MS.gene045356:CDS 40.0%
! GTTTCTGAAGAAACTACCAC+TGG + chr3.4:78978839-78978858 MS.gene045356:CDS 40.0%
! GTTTTCCCTGAAACCAAAAC+TGG + chr3.4:78980031-78980050 MS.gene045356:CDS 40.0%
!! GAAGAGGTTTTTGAGAAGAC+TGG + chr3.4:78978695-78978714 MS.gene045356:CDS 40.0%
!! TTCAAAGGTGCTAGAATCAC+CGG + chr3.4:78978389-78978408 MS.gene045356:CDS 40.0%
!!! ATGATGCCAGTTTTGGTTTC+AGG - chr3.4:78980040-78980059 None:intergenic 40.0%
!!! TGATGCCAGTTTTGGTTTCA+GGG - chr3.4:78980039-78980058 None:intergenic 40.0%
AAGGTTGCTGCTCTTCATCT+TGG + chr3.4:78980232-78980251 MS.gene045356:CDS 45.0%
ACTCAATCTGGGCAATGACT+TGG - chr3.4:78980144-78980163 None:intergenic 45.0%
AGATGTTGCAGGAACACCAA+CGG - chr3.4:78978481-78978500 None:intergenic 45.0%
AGCATGACATGACGAAACTG+GGG - chr3.4:78980111-78980130 None:intergenic 45.0%
AGTAGCTCTCATCAGTCCAT+CGG - chr3.4:78979645-78979664 None:intergenic 45.0%
ATGAACTTGGGATGTGCTAC+TGG + chr3.4:78980082-78980101 MS.gene045356:CDS 45.0%
CAAGTTCCAACCAACACTGT+TGG - chr3.4:78979278-78979297 None:intergenic 45.0%
CCATCATCAACGATGAGATC+TGG - chr3.4:78978635-78978654 None:intergenic 45.0%
CCATGTTGAACCAACAGTGT+TGG + chr3.4:78979265-78979284 MS.gene045356:intron 45.0%
CGAAGGTCGTTTGATGAACT+TGG + chr3.4:78980069-78980088 MS.gene045356:CDS 45.0%
CTGCATCTCAGCATTATCAG+TGG - chr3.4:78978741-78978760 None:intergenic 45.0%
CTTCAGCCTTAACACCTTCA+TGG - chr3.4:78978679-78978698 None:intergenic 45.0%
GAGCATGACATGACGAAACT+GGG - chr3.4:78980112-78980131 None:intergenic 45.0%
GCACTTCAAGCTCTTATGGA+AGG + chr3.4:78979788-78979807 MS.gene045356:CDS 45.0%
GCTACTGATGTGATGATTGC+CGG + chr3.4:78979659-78979678 MS.gene045356:CDS 45.0%
GGTAACAAAGATGTCAGCCT+CGG - chr3.4:78979846-78979865 None:intergenic 45.0%
GGTGATTCTAGCACCTTTGA+AGG - chr3.4:78978390-78978409 None:intergenic 45.0%
GGTTATGGAGATGTTGGCAA+GGG + chr3.4:78979701-78979720 MS.gene045356:CDS 45.0%
GTAAAGCCTCTTAACACCAG+TGG - chr3.4:78978858-78978877 None:intergenic 45.0%
TACATCAGTGTGCCTGTTGA+GGG + chr3.4:78980301-78980320 MS.gene045356:CDS 45.0%
TGACTCTGTTACCAAGAGCA+AGG + chr3.4:78978925-78978944 MS.gene045356:CDS 45.0%
TGATGTGATGATTGCCGGAA+AGG + chr3.4:78979664-78979683 MS.gene045356:CDS 45.0%
TGGTTATGGAGATGTTGGCA+AGG + chr3.4:78979700-78979719 MS.gene045356:CDS 45.0%
TGTCCTTGACCTTGTATTCG+CGG - chr3.4:78978271-78978290 None:intergenic 45.0%
TTACATCAGTGTGCCTGTTG+AGG + chr3.4:78980300-78980319 MS.gene045356:CDS 45.0%
TTCACCTTTCCATGCGAACA+CGG - chr3.4:78978552-78978571 None:intergenic 45.0%
TTGAGTGGAGAAGATGTTGC+AGG - chr3.4:78978492-78978511 None:intergenic 45.0%
TTTGGAGGATGTTATCTCCG+AGG + chr3.4:78979826-78979845 MS.gene045356:CDS 45.0%
! ACCTTCTCATCAAGGTGCTT+AGG - chr3.4:78980217-78980236 None:intergenic 45.0%
! CCAGATCTCATCGTTGATGA+TGG + chr3.4:78978632-78978651 MS.gene045356:CDS 45.0%
! GGAAAGGTTGCTGTTGTATG+TGG + chr3.4:78979680-78979699 MS.gene045356:CDS 45.0%
! TCATTGCCCAGATTGAGTTG+TGG + chr3.4:78980146-78980165 MS.gene045356:CDS 45.0%
! TCTAGCACCTTTGAAGGGTT+GGG - chr3.4:78978384-78978403 None:intergenic 45.0%
! TGTGCTGCTGCATTGAAACA+GGG + chr3.4:78979725-78979744 MS.gene045356:CDS 45.0%
! TTCTAGCACCTTTGAAGGGT+TGG - chr3.4:78978385-78978404 None:intergenic 45.0%
! TTGTGCTGCTGCATTGAAAC+AGG + chr3.4:78979724-78979743 MS.gene045356:CDS 45.0%
!! AATCTGGGCAATGACTTGGT+TGG - chr3.4:78980140-78980159 None:intergenic 45.0%
!! AGGGAACAAAAGAGTACCAC+TGG - chr3.4:78978891-78978910 None:intergenic 45.0%
!! CAACAGTGTTGGTTGGAACT+TGG + chr3.4:78979276-78979295 MS.gene045356:intron 45.0%
!! CCAACACTGTTGGTTCAACA+TGG - chr3.4:78979268-78979287 None:intergenic 45.0%
!! GATCTCATCGTTGATGATGG+TGG + chr3.4:78978635-78978654 MS.gene045356:CDS 45.0%
!! GTTGAACCAACAGTGTTGGT+TGG + chr3.4:78979269-78979288 MS.gene045356:intron 45.0%
!! TGAAGGTGTTAAGGCTGAAG+AGG + chr3.4:78978679-78978698 MS.gene045356:CDS 45.0%
!!! TTTAAAATAAATATAGATAA+TGG - chr3.4:78979446-78979465 None:intergenic 5.0%
ATCGAAACCCTAACCGCTCT+CGG + chr3.4:78978446-78978465 MS.gene045356:CDS 50.0%
ATGTCCTGCCGAACCGAATT+CGG + chr3.4:78978353-78978372 MS.gene045356:CDS 50.0%
ATTGTGATGCGCTTCACACC+AGG - chr3.4:78979989-78980008 None:intergenic 50.0%
CACCAAGCTCTCCAAAGATC+AGG + chr3.4:78980273-78980292 MS.gene045356:CDS 50.0%
CATGGACTTGAGACTTACCC+TGG + chr3.4:78979968-78979987 MS.gene045356:CDS 50.0%
CTCTGAACGTGCTCTTGACT+GGG + chr3.4:78978595-78978614 MS.gene045356:CDS 50.0%
CTGGTTGAAACCACCACTAG+CGG + chr3.4:78978245-78978264 MS.gene045356:CDS 50.0%
CTTTACCAGATGCAAGCCAG+TGG + chr3.4:78978872-78978891 MS.gene045356:CDS 50.0%
GAGCAGCAACCTTCTCATCA+AGG - chr3.4:78980225-78980244 None:intergenic 50.0%
GCCTAAGCACCTTGATGAGA+AGG + chr3.4:78980213-78980232 MS.gene045356:CDS 50.0%
GGAGCATGACATGACGAAAC+TGG - chr3.4:78980113-78980132 None:intergenic 50.0%
GGTTAGGGTTTCGATGAGGA+CGG - chr3.4:78978441-78978460 None:intergenic 50.0%
GTAGCTCTCATCAGTCCATC+GGG - chr3.4:78979644-78979663 None:intergenic 50.0%
TAGACCGGGCATTTCGACTT+CGG - chr3.4:78978333-78978352 None:intergenic 50.0%
TAGCTCTCATCAGTCCATCG+GGG - chr3.4:78979643-78979662 None:intergenic 50.0%
TCTGAACGTGCTCTTGACTG+GGG + chr3.4:78978596-78978615 MS.gene045356:CDS 50.0%
TTGTGATGCGCTTCACACCA+GGG - chr3.4:78979988-78980007 None:intergenic 50.0%
! TGCCCAGATTGAGTTGTGGA+AGG + chr3.4:78980150-78980169 MS.gene045356:CDS 50.0%
! TGCCTGATCTTTGGAGAGCT+TGG - chr3.4:78980278-78980297 None:intergenic 50.0%
!! GGCAATGACTTGGTTGGTGA+AGG - chr3.4:78980134-78980153 None:intergenic 50.0%
ACCTTTCCATGCGAACACGG+CGG - chr3.4:78978549-78978568 None:intergenic 55.0%
ATGAGATCTGGTCCACCACC+AGG - chr3.4:78978623-78978642 None:intergenic 55.0%
CATACAAGCCTGCCCACTAC+AGG + chr3.4:78980326-78980345 MS.gene045356:CDS 55.0%
GAGCGGTTAGGGTTTCGATG+AGG - chr3.4:78978445-78978464 None:intergenic 55.0%
GATTTCGAGACGGCCGAAGT+CGG - chr3.4:78978303-78978322 None:intergenic 55.0%
GCTCTTCATCTTGGCCAGCT+TGG + chr3.4:78980241-78980260 MS.gene045356:CDS 55.0%
GCTGCTGCATTGAAACAGGG+TGG + chr3.4:78979728-78979747 MS.gene045356:CDS 55.0%
GGCATCATTGTCTTGGCCGA+AGG + chr3.4:78980052-78980071 MS.gene045356:CDS 55.0%
GGCTTGTATGGACCCTCAAC+AGG - chr3.4:78980316-78980335 None:intergenic 55.0%
GGGATGGACCGAATTCGGTT+CGG - chr3.4:78978364-78978383 None:intergenic 55.0%
GGGTTGGGATGGACCGAATT+CGG - chr3.4:78978369-78978388 None:intergenic 55.0%
GGTCCATCCCAACCCTTCAA+AGG + chr3.4:78978374-78978393 MS.gene045356:CDS 55.0%
GGTTCGGCAGGACATTAGAC+CGG - chr3.4:78978348-78978367 None:intergenic 55.0%
GTTCGGCAGGACATTAGACC+GGG - chr3.4:78978347-78978366 None:intergenic 55.0%
TAGGGTTTCGATGAGGACGG+CGG - chr3.4:78978438-78978457 None:intergenic 55.0%
TGGTGAGCTTAGCTCCAAGC+TGG - chr3.4:78980258-78980277 None:intergenic 55.0%
TTTCGATGAGGACGGCGGTT+TGG - chr3.4:78978433-78978452 None:intergenic 55.0%
! GACATGTCCCAAGCCGACTT+CGG + chr3.4:78978287-78978306 MS.gene045356:CDS 55.0%
! GCACCTTTGAAGGGTTGGGA+TGG - chr3.4:78978380-78978399 None:intergenic 55.0%
! GCTCTGAACGTGCTCTTGAC+TGG + chr3.4:78978594-78978613 MS.gene045356:CDS 55.0%
!! CTGTAGTGGGCAGGCTTGTA+TGG - chr3.4:78980328-78980347 None:intergenic 55.0%
!! GAGTACCACTGGCTTGCATC+TGG - chr3.4:78978880-78978899 None:intergenic 55.0%
CACTAGCGGCCGCGAATACA+AGG + chr3.4:78978259-78978278 MS.gene045356:CDS 60.0%
CGGCCGCGAATACAAGGTCA+AGG + chr3.4:78978265-78978284 MS.gene045356:CDS 60.0%
CGGCGAGCTCGATTTCGAGA+CGG - chr3.4:78978313-78978332 None:intergenic 60.0%
CTCGCCGAAGTCGAAATGCC+CGG + chr3.4:78978326-78978345 MS.gene045356:CDS 60.0%
CTTGTATTCGCGGCCGCTAG+TGG - chr3.4:78978261-78978280 None:intergenic 60.0%
GTCCATCGGGGAGTGAGTGA+CGG - chr3.4:78979631-78979650 None:intergenic 60.0%
! TTCAGCGCCGAGAGCGGTTA+GGG - chr3.4:78978456-78978475 None:intergenic 60.0%
!! TGGACCGAATTCGGTTCGGC+AGG - chr3.4:78978360-78978379 None:intergenic 60.0%
CGTGCTCTTGACTGGGGTCC+TGG + chr3.4:78978602-78978621 MS.gene045356:CDS 65.0%
CTTGACTGGGGTCCTGGTGG+TGG + chr3.4:78978608-78978627 MS.gene045356:CDS 65.0%
GCCGCCGTGTTCGCATGGAA+AGG + chr3.4:78978545-78978564 MS.gene045356:CDS 65.0%
GCTCTTGACTGGGGTCCTGG+TGG + chr3.4:78978605-78978624 MS.gene045356:CDS 65.0%
GTATTCGCGGCCGCTAGTGG+TGG - chr3.4:78978258-78978277 None:intergenic 65.0%
GTCACGAGCGATGGCAGCAG+CGG - chr3.4:78978522-78978541 None:intergenic 65.0%
TGCCGTCACTCACTCCCCGA+TGG + chr3.4:78979626-78979645 MS.gene045356:CDS 65.0%
! ACGGACTTCAGCGCCGAGAG+CGG - chr3.4:78978462-78978481 None:intergenic 65.0%
! AGCAGCGGCGTGGTCTTGAG+TGG - chr3.4:78978507-78978526 None:intergenic 65.0%
! CTCTCGGCGCTGAAGTCCGT+TGG + chr3.4:78978462-78978481 MS.gene045356:CDS 65.0%
! CTTCAGCGCCGAGAGCGGTT+AGG - chr3.4:78978457-78978476 None:intergenic 65.0%
! GAGACGGCCGAAGTCGGCTT+GGG - chr3.4:78978297-78978316 None:intergenic 65.0%
ACAGCGCCGCCGTGTTCGCA+TGG + chr3.4:78978540-78978559 MS.gene045356:CDS 70.0%
CGAGACGGCCGAAGTCGGCT+TGG - chr3.4:78978298-78978317 None:intergenic 70.0%
GAGCGATGGCAGCAGCGGCG+TGG - chr3.4:78978517-78978536 None:intergenic 75.0%
GGCGGCGCTGTCACGAGCGA+TGG - chr3.4:78978531-78978550 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 78978236 78980354 78978236 ID=MS.gene045356
chr3.4 mRNA 78978236 78980354 78978236 ID=MS.gene045356.t1;Parent=MS.gene045356
chr3.4 exon 78978236 78978946 78978236 ID=MS.gene045356.t1.exon1;Parent=MS.gene045356.t1
chr3.4 CDS 78978236 78978946 78978236 ID=cds.MS.gene045356.t1;Parent=MS.gene045356.t1
chr3.4 exon 78979608 78980354 78979608 ID=MS.gene045356.t1.exon2;Parent=MS.gene045356.t1
chr3.4 CDS 78979608 78980354 78979608 ID=cds.MS.gene045356.t1;Parent=MS.gene045356.t1
Gene Sequence

>MS.gene045356

ATGGCGTTGCTGGTTGAAACCACCACTAGCGGCCGCGAATACAAGGTCAAGGACATGTCCCAAGCCGACTTCGGCCGTCTCGAAATCGAGCTCGCCGAAGTCGAAATGCCCGGTCTAATGTCCTGCCGAACCGAATTCGGTCCATCCCAACCCTTCAAAGGTGCTAGAATCACCGGTTCACTTCACATGACAATCCAAACCGCCGTCCTCATCGAAACCCTAACCGCTCTCGGCGCTGAAGTCCGTTGGTGTTCCTGCAACATCTTCTCCACTCAAGACCACGCCGCTGCTGCCATCGCTCGTGACAGCGCCGCCGTGTTCGCATGGAAAGGTGAAACTCTTCAAGAGTATTGGTGGTGCTCTGAACGTGCTCTTGACTGGGGTCCTGGTGGTGGACCAGATCTCATCGTTGATGATGGTGGTGATGTTACGCTTTTGATCCATGAAGGTGTTAAGGCTGAAGAGGTTTTTGAGAAGACTGGTCAGTTACCTGATCCTTCTTCCACTGATAATGCTGAGATGCAGATTGTTCTTACCATTATCAGAGATGGTTTGAAGACTGATCCTAAGAGGTACCAGAAGATGAAGACTAGAATTGTTGGTGTTTCTGAAGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAAGCCAGTGGTACTCTTTTGTTCCCTGCTATCAATGTCAATGACTCTGTTACCAAGAGCAAGGTATAATTTTTTTCTTTCTTGTTTCTATTTTTGGTTATTAATCAGTTTTTTGTGTTTGGTTTATTTATTTGATTCAGATCTGTTGCTATTATGTGTTTGTTTTTGTTGAATTTAGTTAATTTGAATTTCAGATCTATGTTTTGTTTTTTGAAATTGCTAAATTGAGATGGGTTTGGTAGATCCCATAAAATGGGAGAGTGTTATTTTATCATTAAAATTATTATGATATACTGTACTATGTGTGATGTAATTGTTTTTTTTAGTATGTTTTGAAAATCTGAAACTATTTAAAACTCACAATGATATTGTTTTATAGTTCCATGTTGAACCAACAGTGTTGGTTGGAACTTGGAATTGTCAAAAGAAAAGGTTGGTTGGATCTAATGTTTTAATTGATCTTTGTCATCAATTTAATCATCTTCAAATGATTTTCATTGTTGATTTCAAATCAAACGACCAAGATCTATAATGACATCACACATTTGCTAATTGGAATCCATTATCTATATTTATTTTAAAAGTTTAATTGTCTAGGGTAGATCAGTTATTTATTAGTTTGTTGGAGAACAATAAGTTGGTTACTTTTTTGTTGTAAATTCAAATCTGTTTACCTTTTGTGTGATGTTGTCTAACAAATAATGTTGTTTTGTGATATTAACAGTTTGACAACTTGTACGGTTGCCGTCACTCACTCCCCGATGGACTGATGAGAGCTACTGATGTGATGATTGCCGGAAAGGTTGCTGTTGTATGTGGTTATGGAGATGTTGGCAAGGGTTGTGCTGCTGCATTGAAACAGGGTGGTGCTCGTGTGATCGTGACTGAAATCGATCCAATTTGTGCACTTCAAGCTCTTATGGAAGGTCTTCAAGTCTTGACTTTGGAGGATGTTATCTCCGAGGCTGACATCTTTGTTACCACAACCGGTAACAAAGACATTATCATGGTTAGTGACATGAAGAAAATGAAGAACAATGCCATTGTCTGCAATATTGGTCACTTCGACAATGAAATTGACATGCATGGACTTGAGACTTACCCTGGTGTGAAGCGCATCACAATTAAGCCACAAACTGACAGATGGGTTTTCCCTGAAACCAAAACTGGCATCATTGTCTTGGCCGAAGGTCGTTTGATGAACTTGGGATGTGCTACTGGACACCCCAGTTTCGTCATGTCATGCTCCTTCACCAACCAAGTCATTGCCCAGATTGAGTTGTGGAAGGAAAAGACTTCCGGCAAGTATGAAAAGAAGGTATATGTTTTGCCTAAGCACCTTGATGAGAAGGTTGCTGCTCTTCATCTTGGCCAGCTTGGAGCTAAGCTCACCAAGCTCTCCAAAGATCAGGCAGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCCCACTACAGGTATTGA

Protein sequence

>MS.gene045356.t1

MALLVETTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCSERALDWGPGGGPDLIVDDGGDVTLLIHEGVKAEEVFEKTGQLPDPSSTDNAEMQIVLTIIRDGLKTDPKRYQKMKTRIVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQGGARVIVTEIDPICALQALMEGLQVLTLEDVISEADIFVTTTGNKDIIMVSDMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETKTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQIELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY