Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045356.t1 | P50246.1 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 2.10E-281 | 977.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045356.t1 | P50246 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 5.0e-284 | 977.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045356.t1 | Q84RD8 | 99.2 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 6.3e-280 | 972.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81765 | MS.gene045356 | PPI |
MS.gene045356 | MS.gene79895 | PPI |
MS.gene77533 | MS.gene045356 | PPI |
MS.gene056896 | MS.gene045356 | PPI |
MS.gene06645 | MS.gene045356 | PPI |
MS.gene007189 | MS.gene045356 | PPI |
MS.gene045356 | MS.gene050252 | PPI |
MS.gene057206 | MS.gene045356 | PPI |
MS.gene75668 | MS.gene045356 | PPI |
MS.gene06859 | MS.gene045356 | PPI |
MS.gene050290 | MS.gene045356 | PPI |
MS.gene013534 | MS.gene045356 | PPI |
MS.gene034846 | MS.gene045356 | PPI |
MS.gene24706 | MS.gene045356 | PPI |
MS.gene79895 | MS.gene045356 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045356.t1 | MTR_3g084340 | 99.175 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1001 |
MS.gene045356.t1 | MTR_8g083090 | 91.753 | 485 | 40 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045356.t1 | AT4G13940 | 91.134 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
MS.gene045356.t1 | AT3G23810 | 89.897 | 485 | 49 | 0 | 1 | 485 | 1 | 485 | 0.0 | 904 |
MS.gene045356.t1 | AT4G13940 | 82.268 | 485 | 41 | 1 | 1 | 485 | 1 | 440 | 0.0 | 814 |
MS.gene045356.t1 | AT4G13940 | 89.532 | 363 | 38 | 0 | 123 | 485 | 2 | 364 | 0.0 | 693 |
MS.gene045356.t1 | AT4G13940 | 91.558 | 308 | 26 | 0 | 1 | 308 | 1 | 308 | 0.0 | 573 |
Find 152 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTGCACTTCAAGCTCTTA+TGG | 0.246520 | 3.4:+78979784 | MS.gene045356:CDS |
CAAGACAATGATGCCAGTTT+TGG | 0.273063 | 3.4:-78980044 | None:intergenic |
CATGATAATGTCTTTGTTAC+CGG | 0.281658 | 3.4:-78979870 | None:intergenic |
TTTCCTTCCACAACTCAATC+TGG | 0.282987 | 3.4:-78980153 | None:intergenic |
GCTCTGAACGTGCTCTTGAC+TGG | 0.284203 | 3.4:+78978594 | MS.gene045356:CDS |
TTCATCTTCTGGTACCTCTT+AGG | 0.306451 | 3.4:-78978800 | None:intergenic |
CTCTGAACGTGCTCTTGACT+GGG | 0.308933 | 3.4:+78978595 | MS.gene045356:CDS |
CAATTCTAGTCTTCATCTTC+TGG | 0.309837 | 3.4:-78978811 | None:intergenic |
ATCCATCGCAATGGCGTTGC+TGG | 0.321329 | 3.4:+78978226 | None:intergenic |
CGAAGGTCGTTTGATGAACT+TGG | 0.331691 | 3.4:+78980069 | MS.gene045356:CDS |
CTTCAGCCTTAACACCTTCA+TGG | 0.332449 | 3.4:-78978676 | None:intergenic |
GATGTAATCTGCCTGATCTT+TGG | 0.337935 | 3.4:-78980284 | None:intergenic |
AATGCCATTGTCTGCAATAT+TGG | 0.338131 | 3.4:+78979920 | MS.gene045356:CDS |
ATGTCCTGCCGAACCGAATT+CGG | 0.339299 | 3.4:+78978353 | MS.gene045356:CDS |
AGAGCTTGAAGTGCACAAAT+TGG | 0.344753 | 3.4:-78979779 | None:intergenic |
CTTCAAACCATCTCTGATAA+TGG | 0.351075 | 3.4:-78978771 | None:intergenic |
CTTCAGCGCCGAGAGCGGTT+AGG | 0.352649 | 3.4:-78978454 | None:intergenic |
GGAGCATGACATGACGAAAC+TGG | 0.354812 | 3.4:-78980110 | None:intergenic |
ATGAACTTGGGATGTGCTAC+TGG | 0.363624 | 3.4:+78980082 | MS.gene045356:CDS |
CTGTAGTGGGCAGGCTTGTA+TGG | 0.371722 | 3.4:-78980325 | None:intergenic |
GTTGCTGTTGTATGTGGTTA+TGG | 0.380098 | 3.4:+78979686 | MS.gene045356:CDS |
CGTGCTCTTGACTGGGGTCC+TGG | 0.385588 | 3.4:+78978602 | MS.gene045356:CDS |
ACATACAACAGCAACCTTTC+CGG | 0.388605 | 3.4:-78979678 | None:intergenic |
GGGTTGGGATGGACCGAATT+CGG | 0.390190 | 3.4:-78978366 | None:intergenic |
GCTCTTCATCTTGGCCAGCT+TGG | 0.394343 | 3.4:+78980241 | MS.gene045356:CDS |
GACATCTTTGTTACCACAAC+CGG | 0.395286 | 3.4:+78979851 | MS.gene045356:CDS |
TTGTGCTGCTGCATTGAAAC+AGG | 0.399578 | 3.4:+78979724 | MS.gene045356:CDS |
CTTGACTGGGGTCCTGGTGG+TGG | 0.403597 | 3.4:+78978608 | MS.gene045356:CDS |
TCTAGCACCTTTGAAGGGTT+GGG | 0.410769 | 3.4:-78978381 | None:intergenic |
AAGGTTGCTGCTCTTCATCT+TGG | 0.415226 | 3.4:+78980232 | MS.gene045356:CDS |
TTTCGATGAGGACGGCGGTT+TGG | 0.421389 | 3.4:-78978430 | None:intergenic |
TTCTAGCACCTTTGAAGGGT+TGG | 0.427916 | 3.4:-78978382 | None:intergenic |
TTCAGCGCCGAGAGCGGTTA+GGG | 0.433864 | 3.4:-78978453 | None:intergenic |
TTTGATCCATGAAGGTGTTA+AGG | 0.439226 | 3.4:+78978670 | MS.gene045356:CDS |
GGTGATTCTAGCACCTTTGA+AGG | 0.443699 | 3.4:-78978387 | None:intergenic |
GAGACGGCCGAAGTCGGCTT+GGG | 0.446562 | 3.4:-78978294 | None:intergenic |
TTGTGGAAGGAAAAGACTTC+CGG | 0.448452 | 3.4:+78980163 | MS.gene045356:CDS |
TGCCTGATCTTTGGAGAGCT+TGG | 0.448946 | 3.4:-78980275 | None:intergenic |
GCTACTGATGTGATGATTGC+CGG | 0.449909 | 3.4:+78979659 | MS.gene045356:CDS |
GAGTACCACTGGCTTGCATC+TGG | 0.455608 | 3.4:-78978877 | None:intergenic |
AAGATGAAGACTAGAATTGT+TGG | 0.457319 | 3.4:+78978815 | MS.gene045356:CDS |
CACTAGCGGCCGCGAATACA+AGG | 0.463037 | 3.4:+78978259 | MS.gene045356:CDS |
GTAGCTCTCATCAGTCCATC+GGG | 0.463967 | 3.4:-78979641 | None:intergenic |
CACCAAGCTCTCCAAAGATC+AGG | 0.467894 | 3.4:+78980273 | MS.gene045356:CDS |
GGCTTGTATGGACCCTCAAC+AGG | 0.474052 | 3.4:-78980313 | None:intergenic |
TACATCAGTGTGCCTGTTGA+GGG | 0.474583 | 3.4:+78980301 | MS.gene045356:CDS |
TTCCTTCCACAACTCAATCT+GGG | 0.478489 | 3.4:-78980152 | None:intergenic |
AGGTCTTCAAGTCTTGACTT+TGG | 0.482657 | 3.4:+78979808 | MS.gene045356:CDS |
CTCTCGGCGCTGAAGTCCGT+TGG | 0.484320 | 3.4:+78978462 | MS.gene045356:CDS |
CAAGTTCATCAAACGACCTT+CGG | 0.485613 | 3.4:-78980068 | None:intergenic |
AATGTCTTTGTTACCGGTTG+TGG | 0.486256 | 3.4:-78979864 | None:intergenic |
AAAACCCATCTGTCAGTTTG+TGG | 0.488904 | 3.4:-78980013 | None:intergenic |
CGAGACGGCCGAAGTCGGCT+TGG | 0.488999 | 3.4:-78978295 | None:intergenic |
GTGAAACTCTTCAAGAGTAT+TGG | 0.491446 | 3.4:+78978567 | MS.gene045356:CDS |
AAACTACCACTGGTGTTAAG+AGG | 0.493018 | 3.4:+78978849 | MS.gene045356:CDS |
TCTTCAAGTCTTGACTTTGG+AGG | 0.494059 | 3.4:+78979811 | MS.gene045356:CDS |
TTGAGTGGAGAAGATGTTGC+AGG | 0.498069 | 3.4:-78978489 | None:intergenic |
GTTCTTACCATTATCAGAGA+TGG | 0.499328 | 3.4:+78978764 | MS.gene045356:CDS |
GATTGTCATGTGAAGTGAAC+CGG | 0.499367 | 3.4:-78978408 | None:intergenic |
GCCTAAGCACCTTGATGAGA+AGG | 0.499877 | 3.4:+78980213 | MS.gene045356:CDS |
CAAAACTGGCATCATTGTCT+TGG | 0.506187 | 3.4:+78980045 | MS.gene045356:CDS |
GAGCATGACATGACGAAACT+GGG | 0.509921 | 3.4:-78980109 | None:intergenic |
CATACAAGCCTGCCCACTAC+AGG | 0.511416 | 3.4:+78980326 | MS.gene045356:CDS |
ATTGTGATGCGCTTCACACC+AGG | 0.516815 | 3.4:-78979986 | None:intergenic |
GGGATGGACCGAATTCGGTT+CGG | 0.518576 | 3.4:-78978361 | None:intergenic |
ATCGAAACCCTAACCGCTCT+CGG | 0.519237 | 3.4:+78978446 | MS.gene045356:CDS |
TGTCCTTGACCTTGTATTCG+CGG | 0.519525 | 3.4:-78978268 | None:intergenic |
ACAGCGCCGCCGTGTTCGCA+TGG | 0.523074 | 3.4:+78978540 | MS.gene045356:CDS |
TTCCGGCAAGTATGAAAAGA+AGG | 0.523649 | 3.4:+78980180 | MS.gene045356:CDS |
ACTCAATCTGGGCAATGACT+TGG | 0.524880 | 3.4:-78980141 | None:intergenic |
CCATCATCAACGATGAGATC+TGG | 0.525149 | 3.4:-78978632 | None:intergenic |
GTCACGAGCGATGGCAGCAG+CGG | 0.527010 | 3.4:-78978519 | None:intergenic |
GACATGTCCCAAGCCGACTT+CGG | 0.530150 | 3.4:+78978287 | MS.gene045356:CDS |
TAACAGTTTGACAACTTGTA+CGG | 0.530587 | 3.4:+78979602 | MS.gene045356:intron |
GAGTCATTGACATTGATAGC+AGG | 0.532386 | 3.4:-78978908 | None:intergenic |
CTTGTATTCGCGGCCGCTAG+TGG | 0.534197 | 3.4:-78978258 | None:intergenic |
GGCATCATTGTCTTGGCCGA+AGG | 0.539009 | 3.4:+78980052 | MS.gene045356:CDS |
GTATGTGGTTATGGAGATGT+TGG | 0.539146 | 3.4:+78979695 | MS.gene045356:CDS |
GATCATCTCAATACCTGTAG+TGG | 0.539935 | 3.4:-78980339 | None:intergenic |
TAGACCGGGCATTTCGACTT+CGG | 0.540521 | 3.4:-78978330 | None:intergenic |
TTATCAGTGGAAGAAGGATC+AGG | 0.540967 | 3.4:-78978725 | None:intergenic |
TGCCGTCACTCACTCCCCGA+TGG | 0.543995 | 3.4:+78979626 | MS.gene045356:CDS |
TTCAAAGGTGCTAGAATCAC+CGG | 0.545328 | 3.4:+78978389 | MS.gene045356:CDS |
GACAATGAAATTGACATGCA+TGG | 0.548002 | 3.4:+78979950 | MS.gene045356:CDS |
GAGCAGCAACCTTCTCATCA+AGG | 0.548483 | 3.4:-78980222 | None:intergenic |
AGTAGCTCTCATCAGTCCAT+CGG | 0.549778 | 3.4:-78979642 | None:intergenic |
TGGACCGAATTCGGTTCGGC+AGG | 0.550451 | 3.4:-78978357 | None:intergenic |
AAACTCTTCAAGAGTATTGG+TGG | 0.555528 | 3.4:+78978570 | MS.gene045356:CDS |
GGCAATGACTTGGTTGGTGA+AGG | 0.555648 | 3.4:-78980131 | None:intergenic |
TTACATCAGTGTGCCTGTTG+AGG | 0.557257 | 3.4:+78980300 | MS.gene045356:CDS |
TGGTGAGCTTAGCTCCAAGC+TGG | 0.561241 | 3.4:-78980255 | None:intergenic |
GATTTCGAGACGGCCGAAGT+CGG | 0.561398 | 3.4:-78978300 | None:intergenic |
GAAGGTCGTTTGATGAACTT+GGG | 0.567387 | 3.4:+78980070 | MS.gene045356:CDS |
TGAAGGTGTTAAGGCTGAAG+AGG | 0.568244 | 3.4:+78978679 | MS.gene045356:CDS |
CCAGATCTCATCGTTGATGA+TGG | 0.568308 | 3.4:+78978632 | MS.gene045356:CDS |
TGATGTGATGATTGCCGGAA+AGG | 0.572516 | 3.4:+78979664 | MS.gene045356:CDS |
GTCCATCGGGGAGTGAGTGA+CGG | 0.572655 | 3.4:-78979628 | None:intergenic |
GTTCGGCAGGACATTAGACC+GGG | 0.573271 | 3.4:-78978344 | None:intergenic |
GGAAAGGTTGCTGTTGTATG+TGG | 0.573631 | 3.4:+78979680 | MS.gene045356:CDS |
GAGCGATGGCAGCAGCGGCG+TGG | 0.575591 | 3.4:-78978514 | None:intergenic |
GGTTCGGCAGGACATTAGAC+CGG | 0.577241 | 3.4:-78978345 | None:intergenic |
TAAGCCACAAACTGACAGAT+GGG | 0.577992 | 3.4:+78980009 | MS.gene045356:CDS |
GCACCTTTGAAGGGTTGGGA+TGG | 0.581733 | 3.4:-78978377 | None:intergenic |
AGGGAACAAAAGAGTACCAC+TGG | 0.581899 | 3.4:-78978888 | None:intergenic |
GTTTGAAGACTGATCCTAAG+AGG | 0.582975 | 3.4:+78978786 | MS.gene045356:CDS |
GCACTTCAAGCTCTTATGGA+AGG | 0.583496 | 3.4:+78979788 | MS.gene045356:CDS |
TGCCCAGATTGAGTTGTGGA+AGG | 0.584564 | 3.4:+78980150 | MS.gene045356:CDS |
AGCAGCGGCGTGGTCTTGAG+TGG | 0.585227 | 3.4:-78978504 | None:intergenic |
CGGTAACAAAGACATTATCA+TGG | 0.586819 | 3.4:+78979871 | MS.gene045356:CDS |
TCAGCATTATCAGTGGAAGA+AGG | 0.586864 | 3.4:-78978731 | None:intergenic |
ACCTTCTCATCAAGGTGCTT+AGG | 0.587574 | 3.4:-78980214 | None:intergenic |
CTCGCCGAAGTCGAAATGCC+CGG | 0.588811 | 3.4:+78978326 | MS.gene045356:CDS |
GTATTCGCGGCCGCTAGTGG+TGG | 0.589620 | 3.4:-78978255 | None:intergenic |
GGTCCATCCCAACCCTTCAA+AGG | 0.590417 | 3.4:+78978374 | MS.gene045356:CDS |
GTGATTCTAGCACCTTTGAA+GGG | 0.592015 | 3.4:-78978386 | None:intergenic |
ATGAGATCTGGTCCACCACC+AGG | 0.593938 | 3.4:-78978620 | None:intergenic |
ATCATCTCAATACCTGTAGT+GGG | 0.596481 | 3.4:-78980338 | None:intergenic |
TTAAGCCACAAACTGACAGA+TGG | 0.599504 | 3.4:+78980008 | MS.gene045356:CDS |
TGGTTATGGAGATGTTGGCA+AGG | 0.602291 | 3.4:+78979700 | MS.gene045356:CDS |
TTCACCTTTCCATGCGAACA+CGG | 0.604306 | 3.4:-78978549 | None:intergenic |
GGCGGCGCTGTCACGAGCGA+TGG | 0.605675 | 3.4:-78978528 | None:intergenic |
GCCGCCGTGTTCGCATGGAA+AGG | 0.609488 | 3.4:+78978545 | MS.gene045356:CDS |
AGTCATTGACATTGATAGCA+GGG | 0.617293 | 3.4:-78978907 | None:intergenic |
GGTTAGGGTTTCGATGAGGA+CGG | 0.623279 | 3.4:-78978438 | None:intergenic |
CGGCCGCGAATACAAGGTCA+AGG | 0.626311 | 3.4:+78978265 | MS.gene045356:CDS |
TCATTGCCCAGATTGAGTTG+TGG | 0.630377 | 3.4:+78980146 | MS.gene045356:CDS |
CTGCATCTCAGCATTATCAG+TGG | 0.631115 | 3.4:-78978738 | None:intergenic |
GGTTATGGAGATGTTGGCAA+GGG | 0.635999 | 3.4:+78979701 | MS.gene045356:CDS |
TGACTCTGTTACCAAGAGCA+AGG | 0.637085 | 3.4:+78978925 | MS.gene045356:CDS |
GGTAACAAAGATGTCAGCCT+CGG | 0.637559 | 3.4:-78979843 | None:intergenic |
CGGCGAGCTCGATTTCGAGA+CGG | 0.639311 | 3.4:-78978310 | None:intergenic |
CTGGTTGAAACCACCACTAG+CGG | 0.640235 | 3.4:+78978245 | MS.gene045356:CDS |
GCTCTTGACTGGGGTCCTGG+TGG | 0.646422 | 3.4:+78978605 | MS.gene045356:CDS |
AATCTGGGCAATGACTTGGT+TGG | 0.646442 | 3.4:-78980137 | None:intergenic |
AGATGTTGCAGGAACACCAA+CGG | 0.647065 | 3.4:-78978478 | None:intergenic |
TTGTGATGCGCTTCACACCA+GGG | 0.649814 | 3.4:-78979985 | None:intergenic |
GTGACCAATATTGCAGACAA+TGG | 0.654212 | 3.4:-78979924 | None:intergenic |
CATGGACTTGAGACTTACCC+TGG | 0.655927 | 3.4:+78979968 | MS.gene045356:CDS |
GATCTCATCGTTGATGATGG+TGG | 0.656347 | 3.4:+78978635 | MS.gene045356:CDS |
GTAAAGCCTCTTAACACCAG+TGG | 0.656682 | 3.4:-78978855 | None:intergenic |
TGTGCTGCTGCATTGAAACA+GGG | 0.663521 | 3.4:+78979725 | MS.gene045356:CDS |
TCTGAACGTGCTCTTGACTG+GGG | 0.665456 | 3.4:+78978596 | MS.gene045356:CDS |
ACGGACTTCAGCGCCGAGAG+CGG | 0.666573 | 3.4:-78978459 | None:intergenic |
CTTTACCAGATGCAAGCCAG+TGG | 0.671517 | 3.4:+78978872 | MS.gene045356:CDS |
TTTGGAGGATGTTATCTCCG+AGG | 0.672766 | 3.4:+78979826 | MS.gene045356:CDS |
TAGGGTTTCGATGAGGACGG+CGG | 0.676084 | 3.4:-78978435 | None:intergenic |
ACCTTTCCATGCGAACACGG+CGG | 0.684766 | 3.4:-78978546 | None:intergenic |
GTTTCTGAAGAAACTACCAC+TGG | 0.697565 | 3.4:+78978839 | MS.gene045356:CDS |
AGCATGACATGACGAAACTG+GGG | 0.716423 | 3.4:-78980108 | None:intergenic |
GAGCGGTTAGGGTTTCGATG+AGG | 0.727757 | 3.4:-78978442 | None:intergenic |
GCTGCTGCATTGAAACAGGG+TGG | 0.748869 | 3.4:+78979728 | MS.gene045356:CDS |
TAGCTCTCATCAGTCCATCG+GGG | 0.769557 | 3.4:-78979640 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAGTTTAATTGTCTA+GGG | + | chr3.4:78979460-78979479 | MS.gene045356:intron | 15.0% |
!!! | TTTTAAAAGTTTAATTGTCT+AGG | + | chr3.4:78979459-78979478 | MS.gene045356:intron | 15.0% |
!!! | ATTAATCAGTTTTTTGTGTT+TGG | + | chr3.4:78978983-78979002 | MS.gene045356:intron | 20.0% |
!!! | TCAGTTATTTATTAGTTTGT+TGG | + | chr3.4:78979487-78979506 | MS.gene045356:intron | 20.0% |
!!! | TTCTTTCTTGTTTCTATTTT+TGG | + | chr3.4:78978958-78978977 | MS.gene045356:intron | 20.0% |
! | AAAAAATTATACCTTGCTCT+TGG | - | chr3.4:78978939-78978958 | None:intergenic | 25.0% |
! | TGAAATTGCTAAATTGAGAT+GGG | + | chr3.4:78979095-78979114 | MS.gene045356:intron | 25.0% |
! | TTGAAATTGCTAAATTGAGA+TGG | + | chr3.4:78979094-78979113 | MS.gene045356:intron | 25.0% |
AAGATGAAGACTAGAATTGT+TGG | + | chr3.4:78978815-78978834 | MS.gene045356:CDS | 30.0% | |
CTTGGAATTGTCAAAAGAAA+AGG | + | chr3.4:78979294-78979313 | MS.gene045356:intron | 30.0% | |
GAATTGTCAAAAGAAAAGGT+TGG | + | chr3.4:78979298-78979317 | MS.gene045356:intron | 30.0% | |
TAACAGTTTGACAACTTGTA+CGG | + | chr3.4:78979602-78979621 | MS.gene045356:intron | 30.0% | |
TGTGATGTCATTATAGATCT+TGG | - | chr3.4:78979406-78979425 | None:intergenic | 30.0% | |
TTTGGTAGATCCCATAAAAT+GGG | + | chr3.4:78979118-78979137 | MS.gene045356:intron | 30.0% | |
TTTGTTGGAGAACAATAAGT+TGG | + | chr3.4:78979502-78979521 | MS.gene045356:intron | 30.0% | |
! | AATAACACTCTCCCATTTTA+TGG | - | chr3.4:78979132-78979151 | None:intergenic | 30.0% |
! | ATAACACTCTCCCATTTTAT+GGG | - | chr3.4:78979131-78979150 | None:intergenic | 30.0% |
! | CATGATAATGTCTTTGTTAC+CGG | - | chr3.4:78979873-78979892 | None:intergenic | 30.0% |
AATGCCATTGTCTGCAATAT+TGG | + | chr3.4:78979920-78979939 | MS.gene045356:CDS | 35.0% | |
CGGTAACAAAGACATTATCA+TGG | + | chr3.4:78979871-78979890 | MS.gene045356:CDS | 35.0% | |
CTTCAAACCATCTCTGATAA+TGG | - | chr3.4:78978774-78978793 | None:intergenic | 35.0% | |
GACAATGAAATTGACATGCA+TGG | + | chr3.4:78979950-78979969 | MS.gene045356:CDS | 35.0% | |
GTTAGACAACATCACACAAA+AGG | - | chr3.4:78979560-78979579 | None:intergenic | 35.0% | |
GTTCTTACCATTATCAGAGA+TGG | + | chr3.4:78978764-78978783 | MS.gene045356:CDS | 35.0% | |
GTTTGGTAGATCCCATAAAA+TGG | + | chr3.4:78979117-78979136 | MS.gene045356:intron | 35.0% | |
! | AGTCATTGACATTGATAGCA+GGG | - | chr3.4:78978910-78978929 | None:intergenic | 35.0% |
! | CAATTCTAGTCTTCATCTTC+TGG | - | chr3.4:78978814-78978833 | None:intergenic | 35.0% |
! | GACATCACACATTTGCTAAT+TGG | + | chr3.4:78979417-78979436 | MS.gene045356:intron | 35.0% |
! | GTGAAACTCTTCAAGAGTAT+TGG | + | chr3.4:78978567-78978586 | MS.gene045356:CDS | 35.0% |
! | TACCTTCTTTTCATACTTGC+CGG | - | chr3.4:78980185-78980204 | None:intergenic | 35.0% |
! | TGTCAAAAGAAAAGGTTGGT+TGG | + | chr3.4:78979302-78979321 | MS.gene045356:intron | 35.0% |
! | TTGCTAAATTGAGATGGGTT+TGG | + | chr3.4:78979100-78979119 | MS.gene045356:intron | 35.0% |
!! | AAACTCTTCAAGAGTATTGG+TGG | + | chr3.4:78978570-78978589 | MS.gene045356:CDS | 35.0% |
!! | TTTGATCCATGAAGGTGTTA+AGG | + | chr3.4:78978670-78978689 | MS.gene045356:CDS | 35.0% |
AAAACCCATCTGTCAGTTTG+TGG | - | chr3.4:78980016-78980035 | None:intergenic | 40.0% | |
ACATACAACAGCAACCTTTC+CGG | - | chr3.4:78979681-78979700 | None:intergenic | 40.0% | |
AGAGCTTGAAGTGCACAAAT+TGG | - | chr3.4:78979782-78979801 | None:intergenic | 40.0% | |
AGGTCTTCAAGTCTTGACTT+TGG | + | chr3.4:78979808-78979827 | MS.gene045356:CDS | 40.0% | |
CAAAACTGGCATCATTGTCT+TGG | + | chr3.4:78980045-78980064 | MS.gene045356:CDS | 40.0% | |
CAAGTTCATCAAACGACCTT+CGG | - | chr3.4:78980071-78980090 | None:intergenic | 40.0% | |
GAAGGTCGTTTGATGAACTT+GGG | + | chr3.4:78980070-78980089 | MS.gene045356:CDS | 40.0% | |
GACATCTTTGTTACCACAAC+CGG | + | chr3.4:78979851-78979870 | MS.gene045356:CDS | 40.0% | |
GATGTAATCTGCCTGATCTT+TGG | - | chr3.4:78980287-78980306 | None:intergenic | 40.0% | |
GATTGTCATGTGAAGTGAAC+CGG | - | chr3.4:78978411-78978430 | None:intergenic | 40.0% | |
GTATGTGGTTATGGAGATGT+TGG | + | chr3.4:78979695-78979714 | MS.gene045356:CDS | 40.0% | |
GTGACCAATATTGCAGACAA+TGG | - | chr3.4:78979927-78979946 | None:intergenic | 40.0% | |
GTGATTCTAGCACCTTTGAA+GGG | - | chr3.4:78978389-78978408 | None:intergenic | 40.0% | |
GTTTGAAGACTGATCCTAAG+AGG | + | chr3.4:78978786-78978805 | MS.gene045356:CDS | 40.0% | |
TAAGCCACAAACTGACAGAT+GGG | + | chr3.4:78980009-78980028 | MS.gene045356:CDS | 40.0% | |
TCAGCATTATCAGTGGAAGA+AGG | - | chr3.4:78978734-78978753 | None:intergenic | 40.0% | |
TCTTCAAGTCTTGACTTTGG+AGG | + | chr3.4:78979811-78979830 | MS.gene045356:CDS | 40.0% | |
TTAAGCCACAAACTGACAGA+TGG | + | chr3.4:78980008-78980027 | MS.gene045356:CDS | 40.0% | |
TTATCAGTGGAAGAAGGATC+AGG | - | chr3.4:78978728-78978747 | None:intergenic | 40.0% | |
TTCATCTTCTGGTACCTCTT+AGG | - | chr3.4:78978803-78978822 | None:intergenic | 40.0% | |
TTCCGGCAAGTATGAAAAGA+AGG | + | chr3.4:78980180-78980199 | MS.gene045356:CDS | 40.0% | |
TTCCTTCCACAACTCAATCT+GGG | - | chr3.4:78980155-78980174 | None:intergenic | 40.0% | |
TTGTGCACTTCAAGCTCTTA+TGG | + | chr3.4:78979784-78979803 | MS.gene045356:CDS | 40.0% | |
TTGTGGAAGGAAAAGACTTC+CGG | + | chr3.4:78980163-78980182 | MS.gene045356:CDS | 40.0% | |
TTTCCTTCCACAACTCAATC+TGG | - | chr3.4:78980156-78980175 | None:intergenic | 40.0% | |
! | AAACTACCACTGGTGTTAAG+AGG | + | chr3.4:78978849-78978868 | MS.gene045356:CDS | 40.0% |
! | AATGTCTTTGTTACCGGTTG+TGG | - | chr3.4:78979867-78979886 | None:intergenic | 40.0% |
! | CAAGACAATGATGCCAGTTT+TGG | - | chr3.4:78980047-78980066 | None:intergenic | 40.0% |
! | GAGTCATTGACATTGATAGC+AGG | - | chr3.4:78978911-78978930 | None:intergenic | 40.0% |
! | GTTACGCTTTTGATCCATGA+AGG | + | chr3.4:78978662-78978681 | MS.gene045356:CDS | 40.0% |
! | GTTGCTGTTGTATGTGGTTA+TGG | + | chr3.4:78979686-78979705 | MS.gene045356:CDS | 40.0% |
! | GTTTCTGAAGAAACTACCAC+TGG | + | chr3.4:78978839-78978858 | MS.gene045356:CDS | 40.0% |
! | GTTTTCCCTGAAACCAAAAC+TGG | + | chr3.4:78980031-78980050 | MS.gene045356:CDS | 40.0% |
!! | GAAGAGGTTTTTGAGAAGAC+TGG | + | chr3.4:78978695-78978714 | MS.gene045356:CDS | 40.0% |
!! | TTCAAAGGTGCTAGAATCAC+CGG | + | chr3.4:78978389-78978408 | MS.gene045356:CDS | 40.0% |
!!! | ATGATGCCAGTTTTGGTTTC+AGG | - | chr3.4:78980040-78980059 | None:intergenic | 40.0% |
!!! | TGATGCCAGTTTTGGTTTCA+GGG | - | chr3.4:78980039-78980058 | None:intergenic | 40.0% |
AAGGTTGCTGCTCTTCATCT+TGG | + | chr3.4:78980232-78980251 | MS.gene045356:CDS | 45.0% | |
ACTCAATCTGGGCAATGACT+TGG | - | chr3.4:78980144-78980163 | None:intergenic | 45.0% | |
AGATGTTGCAGGAACACCAA+CGG | - | chr3.4:78978481-78978500 | None:intergenic | 45.0% | |
AGCATGACATGACGAAACTG+GGG | - | chr3.4:78980111-78980130 | None:intergenic | 45.0% | |
AGTAGCTCTCATCAGTCCAT+CGG | - | chr3.4:78979645-78979664 | None:intergenic | 45.0% | |
ATGAACTTGGGATGTGCTAC+TGG | + | chr3.4:78980082-78980101 | MS.gene045356:CDS | 45.0% | |
CAAGTTCCAACCAACACTGT+TGG | - | chr3.4:78979278-78979297 | None:intergenic | 45.0% | |
CCATCATCAACGATGAGATC+TGG | - | chr3.4:78978635-78978654 | None:intergenic | 45.0% | |
CCATGTTGAACCAACAGTGT+TGG | + | chr3.4:78979265-78979284 | MS.gene045356:intron | 45.0% | |
CGAAGGTCGTTTGATGAACT+TGG | + | chr3.4:78980069-78980088 | MS.gene045356:CDS | 45.0% | |
CTGCATCTCAGCATTATCAG+TGG | - | chr3.4:78978741-78978760 | None:intergenic | 45.0% | |
CTTCAGCCTTAACACCTTCA+TGG | - | chr3.4:78978679-78978698 | None:intergenic | 45.0% | |
GAGCATGACATGACGAAACT+GGG | - | chr3.4:78980112-78980131 | None:intergenic | 45.0% | |
GCACTTCAAGCTCTTATGGA+AGG | + | chr3.4:78979788-78979807 | MS.gene045356:CDS | 45.0% | |
GCTACTGATGTGATGATTGC+CGG | + | chr3.4:78979659-78979678 | MS.gene045356:CDS | 45.0% | |
GGTAACAAAGATGTCAGCCT+CGG | - | chr3.4:78979846-78979865 | None:intergenic | 45.0% | |
GGTGATTCTAGCACCTTTGA+AGG | - | chr3.4:78978390-78978409 | None:intergenic | 45.0% | |
GGTTATGGAGATGTTGGCAA+GGG | + | chr3.4:78979701-78979720 | MS.gene045356:CDS | 45.0% | |
GTAAAGCCTCTTAACACCAG+TGG | - | chr3.4:78978858-78978877 | None:intergenic | 45.0% | |
TACATCAGTGTGCCTGTTGA+GGG | + | chr3.4:78980301-78980320 | MS.gene045356:CDS | 45.0% | |
TGACTCTGTTACCAAGAGCA+AGG | + | chr3.4:78978925-78978944 | MS.gene045356:CDS | 45.0% | |
TGATGTGATGATTGCCGGAA+AGG | + | chr3.4:78979664-78979683 | MS.gene045356:CDS | 45.0% | |
TGGTTATGGAGATGTTGGCA+AGG | + | chr3.4:78979700-78979719 | MS.gene045356:CDS | 45.0% | |
TGTCCTTGACCTTGTATTCG+CGG | - | chr3.4:78978271-78978290 | None:intergenic | 45.0% | |
TTACATCAGTGTGCCTGTTG+AGG | + | chr3.4:78980300-78980319 | MS.gene045356:CDS | 45.0% | |
TTCACCTTTCCATGCGAACA+CGG | - | chr3.4:78978552-78978571 | None:intergenic | 45.0% | |
TTGAGTGGAGAAGATGTTGC+AGG | - | chr3.4:78978492-78978511 | None:intergenic | 45.0% | |
TTTGGAGGATGTTATCTCCG+AGG | + | chr3.4:78979826-78979845 | MS.gene045356:CDS | 45.0% | |
! | ACCTTCTCATCAAGGTGCTT+AGG | - | chr3.4:78980217-78980236 | None:intergenic | 45.0% |
! | CCAGATCTCATCGTTGATGA+TGG | + | chr3.4:78978632-78978651 | MS.gene045356:CDS | 45.0% |
! | GGAAAGGTTGCTGTTGTATG+TGG | + | chr3.4:78979680-78979699 | MS.gene045356:CDS | 45.0% |
! | TCATTGCCCAGATTGAGTTG+TGG | + | chr3.4:78980146-78980165 | MS.gene045356:CDS | 45.0% |
! | TCTAGCACCTTTGAAGGGTT+GGG | - | chr3.4:78978384-78978403 | None:intergenic | 45.0% |
! | TGTGCTGCTGCATTGAAACA+GGG | + | chr3.4:78979725-78979744 | MS.gene045356:CDS | 45.0% |
! | TTCTAGCACCTTTGAAGGGT+TGG | - | chr3.4:78978385-78978404 | None:intergenic | 45.0% |
! | TTGTGCTGCTGCATTGAAAC+AGG | + | chr3.4:78979724-78979743 | MS.gene045356:CDS | 45.0% |
!! | AATCTGGGCAATGACTTGGT+TGG | - | chr3.4:78980140-78980159 | None:intergenic | 45.0% |
!! | AGGGAACAAAAGAGTACCAC+TGG | - | chr3.4:78978891-78978910 | None:intergenic | 45.0% |
!! | CAACAGTGTTGGTTGGAACT+TGG | + | chr3.4:78979276-78979295 | MS.gene045356:intron | 45.0% |
!! | CCAACACTGTTGGTTCAACA+TGG | - | chr3.4:78979268-78979287 | None:intergenic | 45.0% |
!! | GATCTCATCGTTGATGATGG+TGG | + | chr3.4:78978635-78978654 | MS.gene045356:CDS | 45.0% |
!! | GTTGAACCAACAGTGTTGGT+TGG | + | chr3.4:78979269-78979288 | MS.gene045356:intron | 45.0% |
!! | TGAAGGTGTTAAGGCTGAAG+AGG | + | chr3.4:78978679-78978698 | MS.gene045356:CDS | 45.0% |
!!! | TTTAAAATAAATATAGATAA+TGG | - | chr3.4:78979446-78979465 | None:intergenic | 5.0% |
ATCGAAACCCTAACCGCTCT+CGG | + | chr3.4:78978446-78978465 | MS.gene045356:CDS | 50.0% | |
ATGTCCTGCCGAACCGAATT+CGG | + | chr3.4:78978353-78978372 | MS.gene045356:CDS | 50.0% | |
ATTGTGATGCGCTTCACACC+AGG | - | chr3.4:78979989-78980008 | None:intergenic | 50.0% | |
CACCAAGCTCTCCAAAGATC+AGG | + | chr3.4:78980273-78980292 | MS.gene045356:CDS | 50.0% | |
CATGGACTTGAGACTTACCC+TGG | + | chr3.4:78979968-78979987 | MS.gene045356:CDS | 50.0% | |
CTCTGAACGTGCTCTTGACT+GGG | + | chr3.4:78978595-78978614 | MS.gene045356:CDS | 50.0% | |
CTGGTTGAAACCACCACTAG+CGG | + | chr3.4:78978245-78978264 | MS.gene045356:CDS | 50.0% | |
CTTTACCAGATGCAAGCCAG+TGG | + | chr3.4:78978872-78978891 | MS.gene045356:CDS | 50.0% | |
GAGCAGCAACCTTCTCATCA+AGG | - | chr3.4:78980225-78980244 | None:intergenic | 50.0% | |
GCCTAAGCACCTTGATGAGA+AGG | + | chr3.4:78980213-78980232 | MS.gene045356:CDS | 50.0% | |
GGAGCATGACATGACGAAAC+TGG | - | chr3.4:78980113-78980132 | None:intergenic | 50.0% | |
GGTTAGGGTTTCGATGAGGA+CGG | - | chr3.4:78978441-78978460 | None:intergenic | 50.0% | |
GTAGCTCTCATCAGTCCATC+GGG | - | chr3.4:78979644-78979663 | None:intergenic | 50.0% | |
TAGACCGGGCATTTCGACTT+CGG | - | chr3.4:78978333-78978352 | None:intergenic | 50.0% | |
TAGCTCTCATCAGTCCATCG+GGG | - | chr3.4:78979643-78979662 | None:intergenic | 50.0% | |
TCTGAACGTGCTCTTGACTG+GGG | + | chr3.4:78978596-78978615 | MS.gene045356:CDS | 50.0% | |
TTGTGATGCGCTTCACACCA+GGG | - | chr3.4:78979988-78980007 | None:intergenic | 50.0% | |
! | TGCCCAGATTGAGTTGTGGA+AGG | + | chr3.4:78980150-78980169 | MS.gene045356:CDS | 50.0% |
! | TGCCTGATCTTTGGAGAGCT+TGG | - | chr3.4:78980278-78980297 | None:intergenic | 50.0% |
!! | GGCAATGACTTGGTTGGTGA+AGG | - | chr3.4:78980134-78980153 | None:intergenic | 50.0% |
ACCTTTCCATGCGAACACGG+CGG | - | chr3.4:78978549-78978568 | None:intergenic | 55.0% | |
ATGAGATCTGGTCCACCACC+AGG | - | chr3.4:78978623-78978642 | None:intergenic | 55.0% | |
CATACAAGCCTGCCCACTAC+AGG | + | chr3.4:78980326-78980345 | MS.gene045356:CDS | 55.0% | |
GAGCGGTTAGGGTTTCGATG+AGG | - | chr3.4:78978445-78978464 | None:intergenic | 55.0% | |
GATTTCGAGACGGCCGAAGT+CGG | - | chr3.4:78978303-78978322 | None:intergenic | 55.0% | |
GCTCTTCATCTTGGCCAGCT+TGG | + | chr3.4:78980241-78980260 | MS.gene045356:CDS | 55.0% | |
GCTGCTGCATTGAAACAGGG+TGG | + | chr3.4:78979728-78979747 | MS.gene045356:CDS | 55.0% | |
GGCATCATTGTCTTGGCCGA+AGG | + | chr3.4:78980052-78980071 | MS.gene045356:CDS | 55.0% | |
GGCTTGTATGGACCCTCAAC+AGG | - | chr3.4:78980316-78980335 | None:intergenic | 55.0% | |
GGGATGGACCGAATTCGGTT+CGG | - | chr3.4:78978364-78978383 | None:intergenic | 55.0% | |
GGGTTGGGATGGACCGAATT+CGG | - | chr3.4:78978369-78978388 | None:intergenic | 55.0% | |
GGTCCATCCCAACCCTTCAA+AGG | + | chr3.4:78978374-78978393 | MS.gene045356:CDS | 55.0% | |
GGTTCGGCAGGACATTAGAC+CGG | - | chr3.4:78978348-78978367 | None:intergenic | 55.0% | |
GTTCGGCAGGACATTAGACC+GGG | - | chr3.4:78978347-78978366 | None:intergenic | 55.0% | |
TAGGGTTTCGATGAGGACGG+CGG | - | chr3.4:78978438-78978457 | None:intergenic | 55.0% | |
TGGTGAGCTTAGCTCCAAGC+TGG | - | chr3.4:78980258-78980277 | None:intergenic | 55.0% | |
TTTCGATGAGGACGGCGGTT+TGG | - | chr3.4:78978433-78978452 | None:intergenic | 55.0% | |
! | GACATGTCCCAAGCCGACTT+CGG | + | chr3.4:78978287-78978306 | MS.gene045356:CDS | 55.0% |
! | GCACCTTTGAAGGGTTGGGA+TGG | - | chr3.4:78978380-78978399 | None:intergenic | 55.0% |
! | GCTCTGAACGTGCTCTTGAC+TGG | + | chr3.4:78978594-78978613 | MS.gene045356:CDS | 55.0% |
!! | CTGTAGTGGGCAGGCTTGTA+TGG | - | chr3.4:78980328-78980347 | None:intergenic | 55.0% |
!! | GAGTACCACTGGCTTGCATC+TGG | - | chr3.4:78978880-78978899 | None:intergenic | 55.0% |
CACTAGCGGCCGCGAATACA+AGG | + | chr3.4:78978259-78978278 | MS.gene045356:CDS | 60.0% | |
CGGCCGCGAATACAAGGTCA+AGG | + | chr3.4:78978265-78978284 | MS.gene045356:CDS | 60.0% | |
CGGCGAGCTCGATTTCGAGA+CGG | - | chr3.4:78978313-78978332 | None:intergenic | 60.0% | |
CTCGCCGAAGTCGAAATGCC+CGG | + | chr3.4:78978326-78978345 | MS.gene045356:CDS | 60.0% | |
CTTGTATTCGCGGCCGCTAG+TGG | - | chr3.4:78978261-78978280 | None:intergenic | 60.0% | |
GTCCATCGGGGAGTGAGTGA+CGG | - | chr3.4:78979631-78979650 | None:intergenic | 60.0% | |
! | TTCAGCGCCGAGAGCGGTTA+GGG | - | chr3.4:78978456-78978475 | None:intergenic | 60.0% |
!! | TGGACCGAATTCGGTTCGGC+AGG | - | chr3.4:78978360-78978379 | None:intergenic | 60.0% |
CGTGCTCTTGACTGGGGTCC+TGG | + | chr3.4:78978602-78978621 | MS.gene045356:CDS | 65.0% | |
CTTGACTGGGGTCCTGGTGG+TGG | + | chr3.4:78978608-78978627 | MS.gene045356:CDS | 65.0% | |
GCCGCCGTGTTCGCATGGAA+AGG | + | chr3.4:78978545-78978564 | MS.gene045356:CDS | 65.0% | |
GCTCTTGACTGGGGTCCTGG+TGG | + | chr3.4:78978605-78978624 | MS.gene045356:CDS | 65.0% | |
GTATTCGCGGCCGCTAGTGG+TGG | - | chr3.4:78978258-78978277 | None:intergenic | 65.0% | |
GTCACGAGCGATGGCAGCAG+CGG | - | chr3.4:78978522-78978541 | None:intergenic | 65.0% | |
TGCCGTCACTCACTCCCCGA+TGG | + | chr3.4:78979626-78979645 | MS.gene045356:CDS | 65.0% | |
! | ACGGACTTCAGCGCCGAGAG+CGG | - | chr3.4:78978462-78978481 | None:intergenic | 65.0% |
! | AGCAGCGGCGTGGTCTTGAG+TGG | - | chr3.4:78978507-78978526 | None:intergenic | 65.0% |
! | CTCTCGGCGCTGAAGTCCGT+TGG | + | chr3.4:78978462-78978481 | MS.gene045356:CDS | 65.0% |
! | CTTCAGCGCCGAGAGCGGTT+AGG | - | chr3.4:78978457-78978476 | None:intergenic | 65.0% |
! | GAGACGGCCGAAGTCGGCTT+GGG | - | chr3.4:78978297-78978316 | None:intergenic | 65.0% |
ACAGCGCCGCCGTGTTCGCA+TGG | + | chr3.4:78978540-78978559 | MS.gene045356:CDS | 70.0% | |
CGAGACGGCCGAAGTCGGCT+TGG | - | chr3.4:78978298-78978317 | None:intergenic | 70.0% | |
GAGCGATGGCAGCAGCGGCG+TGG | - | chr3.4:78978517-78978536 | None:intergenic | 75.0% | |
GGCGGCGCTGTCACGAGCGA+TGG | - | chr3.4:78978531-78978550 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 78978236 | 78980354 | 78978236 | ID=MS.gene045356 |
chr3.4 | mRNA | 78978236 | 78980354 | 78978236 | ID=MS.gene045356.t1;Parent=MS.gene045356 |
chr3.4 | exon | 78978236 | 78978946 | 78978236 | ID=MS.gene045356.t1.exon1;Parent=MS.gene045356.t1 |
chr3.4 | CDS | 78978236 | 78978946 | 78978236 | ID=cds.MS.gene045356.t1;Parent=MS.gene045356.t1 |
chr3.4 | exon | 78979608 | 78980354 | 78979608 | ID=MS.gene045356.t1.exon2;Parent=MS.gene045356.t1 |
chr3.4 | CDS | 78979608 | 78980354 | 78979608 | ID=cds.MS.gene045356.t1;Parent=MS.gene045356.t1 |
Gene Sequence |
Protein sequence |