AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79895


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79895.t1 MTR_3g084340 99.175 485 4 0 1 485 1 485 0.0 1001
MS.gene79895.t1 MTR_8g083090 91.753 485 40 0 1 485 1 485 0.0 919
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79895.t1 AT4G13940 91.134 485 43 0 1 485 1 485 0.0 919
MS.gene79895.t1 AT3G23810 89.897 485 49 0 1 485 1 485 0.0 904
MS.gene79895.t1 AT4G13940 82.268 485 41 1 1 485 1 440 0.0 814
MS.gene79895.t1 AT4G13940 89.532 363 38 0 123 485 2 364 0.0 693
MS.gene79895.t1 AT4G13940 91.558 308 26 0 1 308 1 308 0.0 573

Find 150 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCACTTCAAGCTCTTA+TGG 0.246520 3.1:-65405254 MS.gene79895:CDS
CAAGACAATGATGCCAGTTT+TGG 0.273063 3.1:+65404994 None:intergenic
CATGATAATGTCTTTGTTAC+CGG 0.281658 3.1:+65405168 None:intergenic
TTTCCTTCCACAACTCAATC+TGG 0.282987 3.1:+65404885 None:intergenic
GCTCTGAACGTGCTCTTGAC+TGG 0.284203 3.1:-65406443 MS.gene79895:CDS
TTCATCTTCTGGTACCTCTT+AGG 0.306451 3.1:+65406237 None:intergenic
CTCTGAACGTGCTCTTGACT+GGG 0.308933 3.1:-65406442 MS.gene79895:CDS
CAATTCTAGTCTTCATCTTC+TGG 0.309837 3.1:+65406226 None:intergenic
ATCCATCGCAATGGCGTTGC+TGG 0.321329 3.1:-65406811 None:intergenic
CGAAGGTCGTTTGATGAACT+TGG 0.331691 3.1:-65404969 MS.gene79895:CDS
CTTCAGCCTTAACACCTTCA+TGG 0.332449 3.1:+65406361 None:intergenic
GATGTAATCTGCCTGATCTT+TGG 0.335270 3.1:+65404754 None:intergenic
AATGCCATTGTCTGCAATAT+TGG 0.338131 3.1:-65405118 MS.gene79895:CDS
ATGTCCTGCCGAACCGAATT+CGG 0.339299 3.1:-65406684 MS.gene79895:CDS
AGAGCTTGAAGTGCACAAAT+TGG 0.344753 3.1:+65405259 None:intergenic
CTTCAAACCATCTCTGATAA+TGG 0.351075 3.1:+65406266 None:intergenic
CTTCAGCGCCGAGAGCGGTT+AGG 0.352649 3.1:+65406583 None:intergenic
ATGAACTTGGGATGTGCTAC+TGG 0.363624 3.1:-65404956 MS.gene79895:CDS
GTTGCTGTTGTATGTGGATA+TGG 0.374302 3.1:-65405352 MS.gene79895:CDS
CTGTAGTGAGCAGGCTTGTA+TGG 0.381561 3.1:+65404713 None:intergenic
CGTGCTCTTGACTGGGGTCC+TGG 0.385588 3.1:-65406435 MS.gene79895:CDS
ACATACAACAGCAACCTTTC+CGG 0.388605 3.1:+65405360 None:intergenic
GGGTTGGGATGGACCGAATT+CGG 0.390190 3.1:+65406671 None:intergenic
GCTCTTCATCTTGGCCAGCT+TGG 0.394343 3.1:-65404797 MS.gene79895:CDS
GACATCTTTGTTACCACAAC+CGG 0.395286 3.1:-65405187 MS.gene79895:CDS
TTGTGCTGCTGCATTGAAAC+AGG 0.399578 3.1:-65405314 MS.gene79895:CDS
CTTGACTGGGGTCCTGGTGG+TGG 0.403597 3.1:-65406429 MS.gene79895:CDS
TCTAGCACCTTTGAAGGGTT+GGG 0.410769 3.1:+65406656 None:intergenic
AAGGTTGCTGCTCTTCATCT+TGG 0.415226 3.1:-65404806 MS.gene79895:CDS
TTTCGATGAGGACGGCGGTT+TGG 0.421389 3.1:+65406607 None:intergenic
TTCTAGCACCTTTGAAGGGT+TGG 0.427916 3.1:+65406655 None:intergenic
TTCAGCGCCGAGAGCGGTTA+GGG 0.433864 3.1:+65406584 None:intergenic
TTTGATCCATGAAGGTGTTA+AGG 0.439226 3.1:-65406367 MS.gene79895:CDS
GAGCATGACATGACGAAACT+AGG 0.439355 3.1:+65404929 None:intergenic
GGTGATTCTAGCACCTTTGA+AGG 0.443699 3.1:+65406650 None:intergenic
GAGACGGCCGAAGTCGGCTT+GGG 0.446562 3.1:+65406743 None:intergenic
TTGTGGAAGGAAAAGACTTC+CGG 0.448452 3.1:-65404875 MS.gene79895:CDS
GCTACTGATGTGATGATTGC+CGG 0.449909 3.1:-65405379 MS.gene79895:CDS
GAGTACCACTGGCTTGCATC+TGG 0.455608 3.1:+65406160 None:intergenic
TGCCTGATCTTTGGAAAGCT+TGG 0.455962 3.1:+65404763 None:intergenic
AAGATGAAGACTAGAATTGT+TGG 0.457319 3.1:-65406222 MS.gene79895:CDS
CACTAGCGGCCGCGAATACA+AGG 0.463037 3.1:-65406778 MS.gene79895:CDS
GTAGCTCTCATCAGTCCATC+GGG 0.463967 3.1:+65405397 None:intergenic
CACCAAGCTTTCCAAAGATC+AGG 0.467170 3.1:-65404765 MS.gene79895:CDS
GGCTTGTATGGACCCTCAAC+AGG 0.474052 3.1:+65404725 None:intergenic
TACATCAGTGTGCCTGTTGA+GGG 0.474583 3.1:-65404737 MS.gene79895:CDS
TTCCTTCCACAACTCAATCT+GGG 0.478489 3.1:+65404886 None:intergenic
AGGTCTTCAAGTCTTGACTT+TGG 0.482657 3.1:-65405230 MS.gene79895:CDS
CTCTCGGCGCTGAAGTCCGT+TGG 0.484320 3.1:-65406575 MS.gene79895:CDS
CAAGTTCATCAAACGACCTT+CGG 0.485613 3.1:+65404970 None:intergenic
AATGTCTTTGTTACCGGTTG+TGG 0.486256 3.1:+65405174 None:intergenic
AAAACCCATCTGTCAGTTTG+TGG 0.488904 3.1:+65405025 None:intergenic
CGAGACGGCCGAAGTCGGCT+TGG 0.488999 3.1:+65406742 None:intergenic
GTGAAACTCTTCAAGAGTAT+TGG 0.491446 3.1:-65406470 MS.gene79895:CDS
AAACTACCACTGGTGTTAAG+AGG 0.493018 3.1:-65406188 MS.gene79895:CDS
TCTTCAAGTCTTGACTTTGG+AGG 0.494059 3.1:-65405227 MS.gene79895:CDS
TTGAGTGGAGAAGATGTTGC+AGG 0.498069 3.1:+65406548 None:intergenic
GTTCTTACCATTATCAGAGA+TGG 0.499328 3.1:-65406273 MS.gene79895:CDS
GATTGTCATGTGAAGTGAAC+CGG 0.499367 3.1:+65406629 None:intergenic
GCCTAAGCACCTTGATGAGA+AGG 0.499877 3.1:-65404825 MS.gene79895:CDS
CAAAACTGGCATCATTGTCT+TGG 0.506187 3.1:-65404993 MS.gene79895:CDS
ATTGTGATGCGCTTCACACC+AGG 0.516815 3.1:+65405052 None:intergenic
GGGATGGACCGAATTCGGTT+CGG 0.518576 3.1:+65406676 None:intergenic
ATCGAAACCCTAACCGCTCT+CGG 0.519237 3.1:-65406591 MS.gene79895:CDS
TGTCCTTGACCTTGTATTCG+CGG 0.519525 3.1:+65406769 None:intergenic
ACAGCGCCGCCGTGTTCGCA+TGG 0.523074 3.1:-65406497 MS.gene79895:CDS
TTCCGGCAAGTATGAAAAGA+AGG 0.523649 3.1:-65404858 MS.gene79895:CDS
ACTCAATCTGGGCAATGACT+TGG 0.524880 3.1:+65404897 None:intergenic
CCATCATCAACGATGAGATC+TGG 0.525149 3.1:+65406405 None:intergenic
GTCACGAGCGATGGCAGCAG+CGG 0.527010 3.1:+65406518 None:intergenic
GACATGTCCCAAGCCGACTT+CGG 0.530150 3.1:-65406750 MS.gene79895:CDS
TAACAGTTTGACAACTTGTA+CGG 0.530587 3.1:-65405436 MS.gene79895:intron
GAGTCATTGACATTGATAGC+AGG 0.532386 3.1:+65406129 None:intergenic
CTTGTATTCGCGGCCGCTAG+TGG 0.534197 3.1:+65406779 None:intergenic
CATACAAGCCTGCTCACTAC+AGG 0.535609 3.1:-65404712 MS.gene79895:CDS
GGCATCATTGTCTTGGCCGA+AGG 0.539009 3.1:-65404986 MS.gene79895:CDS
TAGACCGGGCATTTCGACTT+CGG 0.540521 3.1:+65406707 None:intergenic
TTATCAGTGGAAGAAGGATC+AGG 0.540967 3.1:+65406312 None:intergenic
TGCCGTCACTCACTCCCCGA+TGG 0.543995 3.1:-65405412 MS.gene79895:CDS
TTCAAAGGTGCTAGAATCAC+CGG 0.545328 3.1:-65406648 MS.gene79895:CDS
GACAATGAAATTGACATGCA+TGG 0.548002 3.1:-65405088 MS.gene79895:CDS
GAGCAGCAACCTTCTCATCA+AGG 0.548483 3.1:+65404816 None:intergenic
AGTAGCTCTCATCAGTCCAT+CGG 0.549778 3.1:+65405396 None:intergenic
TGGACCGAATTCGGTTCGGC+AGG 0.550451 3.1:+65406680 None:intergenic
TCTCAATACCTGTAGTGAGC+AGG 0.551450 3.1:+65404704 None:intergenic
GTATGTGGATATGGAGATGT+TGG 0.552952 3.1:-65405343 MS.gene79895:CDS
AAACTCTTCAAGAGTATTGG+TGG 0.555528 3.1:-65406467 MS.gene79895:CDS
GGCAATGACTTGGTTGGTGA+AGG 0.555648 3.1:+65404907 None:intergenic
TTACATCAGTGTGCCTGTTG+AGG 0.557257 3.1:-65404738 MS.gene79895:CDS
TGGTGAGCTTAGCTCCAAGC+TGG 0.561241 3.1:+65404783 None:intergenic
GATTTCGAGACGGCCGAAGT+CGG 0.561398 3.1:+65406737 None:intergenic
GAAGGTCGTTTGATGAACTT+GGG 0.567387 3.1:-65404968 MS.gene79895:CDS
TGAAGGTGTTAAGGCTGAAG+AGG 0.568244 3.1:-65406358 MS.gene79895:CDS
CCAGATCTCATCGTTGATGA+TGG 0.568308 3.1:-65406405 MS.gene79895:CDS
TGATGTGATGATTGCCGGAA+AGG 0.572516 3.1:-65405374 MS.gene79895:CDS
GTCCATCGGGGAGTGAGTGA+CGG 0.572655 3.1:+65405410 None:intergenic
GTTCGGCAGGACATTAGACC+GGG 0.573271 3.1:+65406693 None:intergenic
GAGCGATGGCAGCAGCGGCG+TGG 0.575591 3.1:+65406523 None:intergenic
GGAAAGGTTGCTGTTGTATG+TGG 0.577058 3.1:-65405358 MS.gene79895:CDS
GGTTCGGCAGGACATTAGAC+CGG 0.577241 3.1:+65406692 None:intergenic
TAAGCCACAAACTGACAGAT+GGG 0.577992 3.1:-65405029 MS.gene79895:CDS
GCACCTTTGAAGGGTTGGGA+TGG 0.581733 3.1:+65406660 None:intergenic
AGGGAACAAAAGAGTACCAC+TGG 0.581899 3.1:+65406149 None:intergenic
GTTTGAAGACTGATCCTAAG+AGG 0.582975 3.1:-65406251 MS.gene79895:CDS
GCACTTCAAGCTCTTATGGA+AGG 0.583496 3.1:-65405250 MS.gene79895:CDS
TGCCCAGATTGAGTTGTGGA+AGG 0.584564 3.1:-65404888 MS.gene79895:CDS
AGCAGCGGCGTGGTCTTGAG+TGG 0.585227 3.1:+65406533 None:intergenic
CGGTAACAAAGACATTATCA+TGG 0.586819 3.1:-65405167 MS.gene79895:CDS
TCAGCATTATCAGTGGAAGA+AGG 0.586864 3.1:+65406306 None:intergenic
ACCTTCTCATCAAGGTGCTT+AGG 0.587574 3.1:+65404824 None:intergenic
CTCGCCGAAGTCGAAATGCC+CGG 0.588811 3.1:-65406711 MS.gene79895:CDS
GTATTCGCGGCCGCTAGTGG+TGG 0.589620 3.1:+65406782 None:intergenic
GGTCCATCCCAACCCTTCAA+AGG 0.590417 3.1:-65406663 MS.gene79895:CDS
GTGATTCTAGCACCTTTGAA+GGG 0.592015 3.1:+65406651 None:intergenic
ATGAGATCTGGTCCACCACC+AGG 0.593938 3.1:+65406417 None:intergenic
AGCATGACATGACGAAACTA+GGG 0.597852 3.1:+65404930 None:intergenic
TTAAGCCACAAACTGACAGA+TGG 0.599504 3.1:-65405030 MS.gene79895:CDS
TTCACCTTTCCATGCGAACA+CGG 0.604306 3.1:+65406488 None:intergenic
GGCGGCGCTGTCACGAGCGA+TGG 0.605675 3.1:+65406509 None:intergenic
GCCGCCGTGTTCGCATGGAA+AGG 0.609488 3.1:-65406492 MS.gene79895:CDS
AGTCATTGACATTGATAGCA+GGG 0.617293 3.1:+65406130 None:intergenic
GGTTAGGGTTTCGATGAGGA+CGG 0.623279 3.1:+65406599 None:intergenic
CGGCCGCGAATACAAGGTCA+AGG 0.626311 3.1:-65406772 MS.gene79895:CDS
TCATTGCCCAGATTGAGTTG+TGG 0.630377 3.1:-65404892 MS.gene79895:CDS
TGGATATGGAGATGTTGGCA+AGG 0.630605 3.1:-65405338 MS.gene79895:CDS
CTGCATCTCAGCATTATCAG+TGG 0.631115 3.1:+65406299 None:intergenic
TGACTCTGTTACCAAGAGCA+AGG 0.637085 3.1:-65406112 MS.gene79895:intron
GGTAACAAAGATGTCAGCCT+CGG 0.637559 3.1:+65405195 None:intergenic
CGGCGAGCTCGATTTCGAGA+CGG 0.639311 3.1:+65406727 None:intergenic
CTGGTTGAAACCACCACTAG+CGG 0.640235 3.1:-65406792 MS.gene79895:CDS
GCTCTTGACTGGGGTCCTGG+TGG 0.646422 3.1:-65406432 MS.gene79895:CDS
AATCTGGGCAATGACTTGGT+TGG 0.646442 3.1:+65404901 None:intergenic
AGATGTTGCAGGAACACCAA+CGG 0.647065 3.1:+65406559 None:intergenic
TTGTGATGCGCTTCACACCA+GGG 0.649814 3.1:+65405053 None:intergenic
GTGACCAATATTGCAGACAA+TGG 0.654212 3.1:+65405114 None:intergenic
CATGGACTTGAGACTTACCC+TGG 0.655927 3.1:-65405070 MS.gene79895:CDS
GATCTCATCGTTGATGATGG+TGG 0.656347 3.1:-65406402 MS.gene79895:CDS
GTAAAGCCTCTTAACACCAG+TGG 0.656682 3.1:+65406182 None:intergenic
TGTGCTGCTGCATTGAAACA+GGG 0.663521 3.1:-65405313 MS.gene79895:CDS
TCTGAACGTGCTCTTGACTG+GGG 0.665456 3.1:-65406441 MS.gene79895:CDS
ACGGACTTCAGCGCCGAGAG+CGG 0.666573 3.1:+65406578 None:intergenic
CTTTACCAGATGCAAGCCAG+TGG 0.671517 3.1:-65406165 MS.gene79895:CDS
TTTGGAGGATGTTATCTCCG+AGG 0.672766 3.1:-65405212 MS.gene79895:CDS
GGATATGGAGATGTTGGCAA+GGG 0.675649 3.1:-65405337 MS.gene79895:CDS
TAGGGTTTCGATGAGGACGG+CGG 0.676084 3.1:+65406602 None:intergenic
ACCTTTCCATGCGAACACGG+CGG 0.684766 3.1:+65406491 None:intergenic
GTTTCTGAAGAAACTACCAC+TGG 0.697565 3.1:-65406198 MS.gene79895:CDS
GAGCGGTTAGGGTTTCGATG+AGG 0.727757 3.1:+65406595 None:intergenic
GCTGCTGCATTGAAACAGGG+TGG 0.748869 3.1:-65405310 MS.gene79895:CDS
TAGCTCTCATCAGTCCATCG+GGG 0.769557 3.1:+65405398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAGTTTAATTGTCTA+GGG - chr3.1:65405929-65405948 MS.gene79895:intron 15.0%
!!! TTTTAAAAGTTTAATTGTCT+AGG - chr3.1:65405928-65405947 MS.gene79895:intron 15.0%
!!! TCAGTTATTTATTAGTTTGT+TGG - chr3.1:65405956-65405975 MS.gene79895:intron 20.0%
!!! TTCTTTCTTGTTTCTATTTT+TGG - chr3.1:65405427-65405446 MS.gene79895:CDS 20.0%
! AAAAAAATATACCTTGCTCT+TGG + chr3.1:65405409-65405428 None:intergenic 25.0%
! TGAAATTGCTAAATTGAGAT+GGG - chr3.1:65405564-65405583 MS.gene79895:intron 25.0%
! TTGAAATTGCTAAATTGAGA+TGG - chr3.1:65405563-65405582 MS.gene79895:intron 25.0%
AAGATGAAGACTAGAATTGT+TGG - chr3.1:65405285-65405304 MS.gene79895:CDS 30.0%
CTTGGAATTGTCAAAAGAAA+AGG - chr3.1:65405763-65405782 MS.gene79895:intron 30.0%
GAATTGTCAAAAGAAAAGGT+TGG - chr3.1:65405767-65405786 MS.gene79895:intron 30.0%
TAACAGTTTGACAACTTGTA+CGG - chr3.1:65406071-65406090 MS.gene79895:intron 30.0%
TGTGATGTCATTATAGATCT+TGG + chr3.1:65405875-65405894 None:intergenic 30.0%
TTTGGTAGATCCCATAAAAT+GGG - chr3.1:65405587-65405606 MS.gene79895:intron 30.0%
TTTGTTGGAGAACAATAAGT+TGG - chr3.1:65405971-65405990 MS.gene79895:intron 30.0%
! AATAACACTCTCCCATTTTA+TGG + chr3.1:65405601-65405620 None:intergenic 30.0%
! ATAACACTCTCCCATTTTAT+GGG + chr3.1:65405600-65405619 None:intergenic 30.0%
! CATGATAATGTCTTTGTTAC+CGG + chr3.1:65406342-65406361 None:intergenic 30.0%
AATGCCATTGTCTGCAATAT+TGG - chr3.1:65406389-65406408 MS.gene79895:CDS 35.0%
CGGTAACAAAGACATTATCA+TGG - chr3.1:65406340-65406359 MS.gene79895:CDS 35.0%
CTTCAAACCATCTCTGATAA+TGG + chr3.1:65405244-65405263 None:intergenic 35.0%
GACAATGAAATTGACATGCA+TGG - chr3.1:65406419-65406438 MS.gene79895:CDS 35.0%
GTTAGACAACATCACACAAA+AGG + chr3.1:65406029-65406048 None:intergenic 35.0%
GTTCTTACCATTATCAGAGA+TGG - chr3.1:65405234-65405253 MS.gene79895:CDS 35.0%
GTTTGGTAGATCCCATAAAA+TGG - chr3.1:65405586-65405605 MS.gene79895:intron 35.0%
! AGTCATTGACATTGATAGCA+GGG + chr3.1:65405380-65405399 None:intergenic 35.0%
! CAATTCTAGTCTTCATCTTC+TGG + chr3.1:65405284-65405303 None:intergenic 35.0%
! GACATCACACATTTGCTAAT+TGG - chr3.1:65405886-65405905 MS.gene79895:intron 35.0%
! GTGAAACTCTTCAAGAGTAT+TGG - chr3.1:65405037-65405056 MS.gene79895:CDS 35.0%
! TACCTTCTTTTCATACTTGC+CGG + chr3.1:65406654-65406673 None:intergenic 35.0%
! TGTCAAAAGAAAAGGTTGGT+TGG - chr3.1:65405771-65405790 MS.gene79895:intron 35.0%
! TTGCTAAATTGAGATGGGTT+TGG - chr3.1:65405569-65405588 MS.gene79895:intron 35.0%
!! AAACTCTTCAAGAGTATTGG+TGG - chr3.1:65405040-65405059 MS.gene79895:CDS 35.0%
!! TTTGATCCATGAAGGTGTTA+AGG - chr3.1:65405140-65405159 MS.gene79895:CDS 35.0%
AAAACCCATCTGTCAGTTTG+TGG + chr3.1:65406485-65406504 None:intergenic 40.0%
ACATACAACAGCAACCTTTC+CGG + chr3.1:65406150-65406169 None:intergenic 40.0%
AGAGCTTGAAGTGCACAAAT+TGG + chr3.1:65406251-65406270 None:intergenic 40.0%
AGCATGACATGACGAAACTA+GGG + chr3.1:65406580-65406599 None:intergenic 40.0%
AGGTCTTCAAGTCTTGACTT+TGG - chr3.1:65406277-65406296 MS.gene79895:CDS 40.0%
CAAAACTGGCATCATTGTCT+TGG - chr3.1:65406514-65406533 MS.gene79895:CDS 40.0%
CAAGTTCATCAAACGACCTT+CGG + chr3.1:65406540-65406559 None:intergenic 40.0%
GAAGGTCGTTTGATGAACTT+GGG - chr3.1:65406539-65406558 MS.gene79895:CDS 40.0%
GACATCTTTGTTACCACAAC+CGG - chr3.1:65406320-65406339 MS.gene79895:CDS 40.0%
GATGTAATCTGCCTGATCTT+TGG + chr3.1:65406756-65406775 None:intergenic 40.0%
GATTGTCATGTGAAGTGAAC+CGG + chr3.1:65404881-65404900 None:intergenic 40.0%
GTATGTGGATATGGAGATGT+TGG - chr3.1:65406164-65406183 MS.gene79895:CDS 40.0%
GTGACCAATATTGCAGACAA+TGG + chr3.1:65406396-65406415 None:intergenic 40.0%
GTGATTCTAGCACCTTTGAA+GGG + chr3.1:65404859-65404878 None:intergenic 40.0%
GTTTGAAGACTGATCCTAAG+AGG - chr3.1:65405256-65405275 MS.gene79895:CDS 40.0%
TAAGCCACAAACTGACAGAT+GGG - chr3.1:65406478-65406497 MS.gene79895:CDS 40.0%
TCAGCATTATCAGTGGAAGA+AGG + chr3.1:65405204-65405223 None:intergenic 40.0%
TCTTCAAGTCTTGACTTTGG+AGG - chr3.1:65406280-65406299 MS.gene79895:CDS 40.0%
TTAAGCCACAAACTGACAGA+TGG - chr3.1:65406477-65406496 MS.gene79895:CDS 40.0%
TTATCAGTGGAAGAAGGATC+AGG + chr3.1:65405198-65405217 None:intergenic 40.0%
TTCATCTTCTGGTACCTCTT+AGG + chr3.1:65405273-65405292 None:intergenic 40.0%
TTCCGGCAAGTATGAAAAGA+AGG - chr3.1:65406649-65406668 MS.gene79895:CDS 40.0%
TTCCTTCCACAACTCAATCT+GGG + chr3.1:65406624-65406643 None:intergenic 40.0%
TTGTGCACTTCAAGCTCTTA+TGG - chr3.1:65406253-65406272 MS.gene79895:CDS 40.0%
TTGTGGAAGGAAAAGACTTC+CGG - chr3.1:65406632-65406651 MS.gene79895:CDS 40.0%
TTTCCTTCCACAACTCAATC+TGG + chr3.1:65406625-65406644 None:intergenic 40.0%
! AAACTACCACTGGTGTTAAG+AGG - chr3.1:65405319-65405338 MS.gene79895:CDS 40.0%
! AATGTCTTTGTTACCGGTTG+TGG + chr3.1:65406336-65406355 None:intergenic 40.0%
! CAAGACAATGATGCCAGTTT+TGG + chr3.1:65406516-65406535 None:intergenic 40.0%
! GAGTCATTGACATTGATAGC+AGG + chr3.1:65405381-65405400 None:intergenic 40.0%
! GTTACGCTTTTGATCCATGA+AGG - chr3.1:65405132-65405151 MS.gene79895:CDS 40.0%
! GTTGCTGTTGTATGTGGATA+TGG - chr3.1:65406155-65406174 MS.gene79895:CDS 40.0%
! GTTTCTGAAGAAACTACCAC+TGG - chr3.1:65405309-65405328 MS.gene79895:CDS 40.0%
! GTTTTCCCTGAAACCAAAAC+TGG - chr3.1:65406500-65406519 MS.gene79895:CDS 40.0%
!! GAAGAGGTTTTTGAGAAGAC+TGG - chr3.1:65405165-65405184 MS.gene79895:CDS 40.0%
!! TTCAAAGGTGCTAGAATCAC+CGG - chr3.1:65404859-65404878 MS.gene79895:CDS 40.0%
!!! ATGATGCCAGTTTTGGTTTC+AGG + chr3.1:65406509-65406528 None:intergenic 40.0%
!!! TGATGCCAGTTTTGGTTTCA+GGG + chr3.1:65406508-65406527 None:intergenic 40.0%
AAGGTTGCTGCTCTTCATCT+TGG - chr3.1:65406701-65406720 MS.gene79895:CDS 45.0%
ACTCAATCTGGGCAATGACT+TGG + chr3.1:65406613-65406632 None:intergenic 45.0%
AGATGTTGCAGGAACACCAA+CGG + chr3.1:65404951-65404970 None:intergenic 45.0%
AGTAGCTCTCATCAGTCCAT+CGG + chr3.1:65406114-65406133 None:intergenic 45.0%
ATGAACTTGGGATGTGCTAC+TGG - chr3.1:65406551-65406570 MS.gene79895:CDS 45.0%
CAAGTTCCAACCAACACTGT+TGG + chr3.1:65405747-65405766 None:intergenic 45.0%
CACCAAGCTTTCCAAAGATC+AGG - chr3.1:65406742-65406761 MS.gene79895:CDS 45.0%
CCATCATCAACGATGAGATC+TGG + chr3.1:65405105-65405124 None:intergenic 45.0%
CCATGTTGAACCAACAGTGT+TGG - chr3.1:65405734-65405753 MS.gene79895:intron 45.0%
CGAAGGTCGTTTGATGAACT+TGG - chr3.1:65406538-65406557 MS.gene79895:CDS 45.0%
CTGCATCTCAGCATTATCAG+TGG + chr3.1:65405211-65405230 None:intergenic 45.0%
CTTCAGCCTTAACACCTTCA+TGG + chr3.1:65405149-65405168 None:intergenic 45.0%
GAGCATGACATGACGAAACT+AGG + chr3.1:65406581-65406600 None:intergenic 45.0%
GCACTTCAAGCTCTTATGGA+AGG - chr3.1:65406257-65406276 MS.gene79895:CDS 45.0%
GCTACTGATGTGATGATTGC+CGG - chr3.1:65406128-65406147 MS.gene79895:CDS 45.0%
GGATATGGAGATGTTGGCAA+GGG - chr3.1:65406170-65406189 MS.gene79895:CDS 45.0%
GGTAACAAAGATGTCAGCCT+CGG + chr3.1:65406315-65406334 None:intergenic 45.0%
GGTGATTCTAGCACCTTTGA+AGG + chr3.1:65404860-65404879 None:intergenic 45.0%
GTAAAGCCTCTTAACACCAG+TGG + chr3.1:65405328-65405347 None:intergenic 45.0%
TACATCAGTGTGCCTGTTGA+GGG - chr3.1:65406770-65406789 MS.gene79895:CDS 45.0%
TGACTCTGTTACCAAGAGCA+AGG - chr3.1:65405395-65405414 MS.gene79895:CDS 45.0%
TGATGTGATGATTGCCGGAA+AGG - chr3.1:65406133-65406152 MS.gene79895:CDS 45.0%
TGGATATGGAGATGTTGGCA+AGG - chr3.1:65406169-65406188 MS.gene79895:CDS 45.0%
TGTCCTTGACCTTGTATTCG+CGG + chr3.1:65404741-65404760 None:intergenic 45.0%
TTACATCAGTGTGCCTGTTG+AGG - chr3.1:65406769-65406788 MS.gene79895:CDS 45.0%
TTCACCTTTCCATGCGAACA+CGG + chr3.1:65405022-65405041 None:intergenic 45.0%
TTGAGTGGAGAAGATGTTGC+AGG + chr3.1:65404962-65404981 None:intergenic 45.0%
TTTGGAGGATGTTATCTCCG+AGG - chr3.1:65406295-65406314 MS.gene79895:CDS 45.0%
! ACCTTCTCATCAAGGTGCTT+AGG + chr3.1:65406686-65406705 None:intergenic 45.0%
! CCAGATCTCATCGTTGATGA+TGG - chr3.1:65405102-65405121 MS.gene79895:CDS 45.0%
! GGAAAGGTTGCTGTTGTATG+TGG - chr3.1:65406149-65406168 MS.gene79895:CDS 45.0%
! TCATTGCCCAGATTGAGTTG+TGG - chr3.1:65406615-65406634 MS.gene79895:CDS 45.0%
! TCTAGCACCTTTGAAGGGTT+GGG + chr3.1:65404854-65404873 None:intergenic 45.0%
! TGCCTGATCTTTGGAAAGCT+TGG + chr3.1:65406747-65406766 None:intergenic 45.0%
! TGTGCTGCTGCATTGAAACA+GGG - chr3.1:65406194-65406213 MS.gene79895:CDS 45.0%
! TTCTAGCACCTTTGAAGGGT+TGG + chr3.1:65404855-65404874 None:intergenic 45.0%
! TTGTGCTGCTGCATTGAAAC+AGG - chr3.1:65406193-65406212 MS.gene79895:CDS 45.0%
!! AATCTGGGCAATGACTTGGT+TGG + chr3.1:65406609-65406628 None:intergenic 45.0%
!! AGGGAACAAAAGAGTACCAC+TGG + chr3.1:65405361-65405380 None:intergenic 45.0%
!! CAACAGTGTTGGTTGGAACT+TGG - chr3.1:65405745-65405764 MS.gene79895:intron 45.0%
!! CCAACACTGTTGGTTCAACA+TGG + chr3.1:65405737-65405756 None:intergenic 45.0%
!! GATCTCATCGTTGATGATGG+TGG - chr3.1:65405105-65405124 MS.gene79895:CDS 45.0%
!! GTTGAACCAACAGTGTTGGT+TGG - chr3.1:65405738-65405757 MS.gene79895:intron 45.0%
!! TGAAGGTGTTAAGGCTGAAG+AGG - chr3.1:65405149-65405168 MS.gene79895:CDS 45.0%
!!! TTTAAAATAAATATAGATAA+TGG + chr3.1:65405915-65405934 None:intergenic 5.0%
ATCGAAACCCTAACCGCTCT+CGG - chr3.1:65404916-65404935 MS.gene79895:CDS 50.0%
ATGTCCTGCCGAACCGAATT+CGG - chr3.1:65404823-65404842 MS.gene79895:CDS 50.0%
ATTGTGATGCGCTTCACACC+AGG + chr3.1:65406458-65406477 None:intergenic 50.0%
CATACAAGCCTGCTCACTAC+AGG - chr3.1:65406795-65406814 MS.gene79895:CDS 50.0%
CATGGACTTGAGACTTACCC+TGG - chr3.1:65406437-65406456 MS.gene79895:CDS 50.0%
CTCTGAACGTGCTCTTGACT+GGG - chr3.1:65405065-65405084 MS.gene79895:CDS 50.0%
CTGGTTGAAACCACCACTAG+CGG - chr3.1:65404715-65404734 MS.gene79895:CDS 50.0%
CTGTAGTGAGCAGGCTTGTA+TGG + chr3.1:65406797-65406816 None:intergenic 50.0%
CTTTACCAGATGCAAGCCAG+TGG - chr3.1:65405342-65405361 MS.gene79895:CDS 50.0%
GAGCAGCAACCTTCTCATCA+AGG + chr3.1:65406694-65406713 None:intergenic 50.0%
GCCTAAGCACCTTGATGAGA+AGG - chr3.1:65406682-65406701 MS.gene79895:CDS 50.0%
GGTTAGGGTTTCGATGAGGA+CGG + chr3.1:65404911-65404930 None:intergenic 50.0%
GTAGCTCTCATCAGTCCATC+GGG + chr3.1:65406113-65406132 None:intergenic 50.0%
TAGACCGGGCATTTCGACTT+CGG + chr3.1:65404803-65404822 None:intergenic 50.0%
TAGCTCTCATCAGTCCATCG+GGG + chr3.1:65406112-65406131 None:intergenic 50.0%
TCTGAACGTGCTCTTGACTG+GGG - chr3.1:65405066-65405085 MS.gene79895:CDS 50.0%
TTGTGATGCGCTTCACACCA+GGG + chr3.1:65406457-65406476 None:intergenic 50.0%
! TGCCCAGATTGAGTTGTGGA+AGG - chr3.1:65406619-65406638 MS.gene79895:CDS 50.0%
!! GGCAATGACTTGGTTGGTGA+AGG + chr3.1:65406603-65406622 None:intergenic 50.0%
ACCTTTCCATGCGAACACGG+CGG + chr3.1:65405019-65405038 None:intergenic 55.0%
ATGAGATCTGGTCCACCACC+AGG + chr3.1:65405093-65405112 None:intergenic 55.0%
GAGCGGTTAGGGTTTCGATG+AGG + chr3.1:65404915-65404934 None:intergenic 55.0%
GATTTCGAGACGGCCGAAGT+CGG + chr3.1:65404773-65404792 None:intergenic 55.0%
GCTCTTCATCTTGGCCAGCT+TGG - chr3.1:65406710-65406729 MS.gene79895:CDS 55.0%
GCTGCTGCATTGAAACAGGG+TGG - chr3.1:65406197-65406216 MS.gene79895:CDS 55.0%
GGCATCATTGTCTTGGCCGA+AGG - chr3.1:65406521-65406540 MS.gene79895:CDS 55.0%
GGCTTGTATGGACCCTCAAC+AGG + chr3.1:65406785-65406804 None:intergenic 55.0%
GGGATGGACCGAATTCGGTT+CGG + chr3.1:65404834-65404853 None:intergenic 55.0%
GGGTTGGGATGGACCGAATT+CGG + chr3.1:65404839-65404858 None:intergenic 55.0%
GGTCCATCCCAACCCTTCAA+AGG - chr3.1:65404844-65404863 MS.gene79895:CDS 55.0%
GGTTCGGCAGGACATTAGAC+CGG + chr3.1:65404818-65404837 None:intergenic 55.0%
GTTCGGCAGGACATTAGACC+GGG + chr3.1:65404817-65404836 None:intergenic 55.0%
TAGGGTTTCGATGAGGACGG+CGG + chr3.1:65404908-65404927 None:intergenic 55.0%
TGGTGAGCTTAGCTCCAAGC+TGG + chr3.1:65406727-65406746 None:intergenic 55.0%
TTTCGATGAGGACGGCGGTT+TGG + chr3.1:65404903-65404922 None:intergenic 55.0%
! GACATGTCCCAAGCCGACTT+CGG - chr3.1:65404757-65404776 MS.gene79895:CDS 55.0%
! GCACCTTTGAAGGGTTGGGA+TGG + chr3.1:65404850-65404869 None:intergenic 55.0%
! GCTCTGAACGTGCTCTTGAC+TGG - chr3.1:65405064-65405083 MS.gene79895:CDS 55.0%
!! GAGTACCACTGGCTTGCATC+TGG + chr3.1:65405350-65405369 None:intergenic 55.0%
CACTAGCGGCCGCGAATACA+AGG - chr3.1:65404729-65404748 MS.gene79895:CDS 60.0%
CGGCCGCGAATACAAGGTCA+AGG - chr3.1:65404735-65404754 MS.gene79895:CDS 60.0%
CGGCGAGCTCGATTTCGAGA+CGG + chr3.1:65404783-65404802 None:intergenic 60.0%
CTCGCCGAAGTCGAAATGCC+CGG - chr3.1:65404796-65404815 MS.gene79895:CDS 60.0%
CTTGTATTCGCGGCCGCTAG+TGG + chr3.1:65404731-65404750 None:intergenic 60.0%
GTCCATCGGGGAGTGAGTGA+CGG + chr3.1:65406100-65406119 None:intergenic 60.0%
! TTCAGCGCCGAGAGCGGTTA+GGG + chr3.1:65404926-65404945 None:intergenic 60.0%
!! TGGACCGAATTCGGTTCGGC+AGG + chr3.1:65404830-65404849 None:intergenic 60.0%
CGTGCTCTTGACTGGGGTCC+TGG - chr3.1:65405072-65405091 MS.gene79895:CDS 65.0%
CTTGACTGGGGTCCTGGTGG+TGG - chr3.1:65405078-65405097 MS.gene79895:CDS 65.0%
GCCGCCGTGTTCGCATGGAA+AGG - chr3.1:65405015-65405034 MS.gene79895:CDS 65.0%
GCTCTTGACTGGGGTCCTGG+TGG - chr3.1:65405075-65405094 MS.gene79895:CDS 65.0%
GTATTCGCGGCCGCTAGTGG+TGG + chr3.1:65404728-65404747 None:intergenic 65.0%
GTCACGAGCGATGGCAGCAG+CGG + chr3.1:65404992-65405011 None:intergenic 65.0%
TGCCGTCACTCACTCCCCGA+TGG - chr3.1:65406095-65406114 MS.gene79895:intron 65.0%
! ACGGACTTCAGCGCCGAGAG+CGG + chr3.1:65404932-65404951 None:intergenic 65.0%
! AGCAGCGGCGTGGTCTTGAG+TGG + chr3.1:65404977-65404996 None:intergenic 65.0%
! CTCTCGGCGCTGAAGTCCGT+TGG - chr3.1:65404932-65404951 MS.gene79895:CDS 65.0%
! CTTCAGCGCCGAGAGCGGTT+AGG + chr3.1:65404927-65404946 None:intergenic 65.0%
! GAGACGGCCGAAGTCGGCTT+GGG + chr3.1:65404767-65404786 None:intergenic 65.0%
ACAGCGCCGCCGTGTTCGCA+TGG - chr3.1:65405010-65405029 MS.gene79895:CDS 70.0%
CGAGACGGCCGAAGTCGGCT+TGG + chr3.1:65404768-65404787 None:intergenic 70.0%
GAGCGATGGCAGCAGCGGCG+TGG + chr3.1:65404987-65405006 None:intergenic 75.0%
GGCGGCGCTGTCACGAGCGA+TGG + chr3.1:65405001-65405020 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 65404706 65406823 65404706 ID=MS.gene79895
chr3.1 mRNA 65404706 65406823 65404706 ID=MS.gene79895.t1;Parent=MS.gene79895
chr3.1 exon 65406113 65406823 65406113 ID=MS.gene79895.t1.exon1;Parent=MS.gene79895.t1
chr3.1 CDS 65406113 65406823 65406113 ID=cds.MS.gene79895.t1;Parent=MS.gene79895.t1
chr3.1 exon 65404706 65405452 65404706 ID=MS.gene79895.t1.exon2;Parent=MS.gene79895.t1
chr3.1 CDS 65404706 65405452 65404706 ID=cds.MS.gene79895.t1;Parent=MS.gene79895.t1
Gene Sequence

>MS.gene79895

ATGGCGTTGCTGGTTGAAACCACCACTAGCGGCCGCGAATACAAGGTCAAGGACATGTCCCAAGCCGACTTCGGCCGTCTCGAAATCGAGCTCGCCGAAGTCGAAATGCCCGGTCTAATGTCCTGCCGAACCGAATTCGGTCCATCCCAACCCTTCAAAGGTGCTAGAATCACCGGTTCACTTCACATGACAATCCAAACCGCCGTCCTCATCGAAACCCTAACCGCTCTCGGCGCTGAAGTCCGTTGGTGTTCCTGCAACATCTTCTCCACTCAAGACCACGCCGCTGCTGCCATCGCTCGTGACAGCGCCGCCGTGTTCGCATGGAAAGGTGAAACTCTTCAAGAGTATTGGTGGTGCTCTGAACGTGCTCTTGACTGGGGTCCTGGTGGTGGACCAGATCTCATCGTTGATGATGGTGGTGATGTTACGCTTTTGATCCATGAAGGTGTTAAGGCTGAAGAGGTTTTTGAGAAGACTGGTCAGTTACCTGATCCTTCTTCCACTGATAATGCTGAGATGCAGATTGTTCTTACCATTATCAGAGATGGTTTGAAGACTGATCCTAAGAGGTACCAGAAGATGAAGACTAGAATTGTTGGTGTTTCTGAAGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAAGCCAGTGGTACTCTTTTGTTCCCTGCTATCAATGTCAATGACTCTGTTACCAAGAGCAAGGTATATTTTTTTCTTTCTTGTTTCTATTTTTGGTTATTAATCAGTTTTTTGTGTTTGATTTATTTATTTGATTCAGATCTGTTGCTATTATGTGTTTGTTTTTGTTGAATTTAGTTAATTTGAATTTCAGATCTATGTTTTGTTTTTTGAAATTGCTAAATTGAGATGGGTTTGGTAGATCCCATAAAATGGGAGAGTGTTATTTTATCATTAAAATTATTATGATATACTGTACTATGTGTGATGTAATTGTTTTTTTTAGTATGTTTTGAAAATCTGAAACTATTTAAAACTCACAATGATATTGTTTTATAGTTCCATGTTGAACCAACAGTGTTGGTTGGAACTTGGAATTGTCAAAAGAAAAGGTTGGTTGGATCTAATGTTTTAATTGATCTTTGTCATCAATTTAATCATCTTCAAATGATTTTCATTGTTGATTTCAAATCAAACGACCAAGATCTATAATGACATCACACATTTGCTAATTGGAATCCATTATCTATATTTATTTTAAAAGTTTAATTGTCTAGGGTAGATCAGTTATTTATTAGTTTGTTGGAGAACAATAAGTTGGTTACTTTTTTGTTGTAAATTCAAATCTGTTTACCTTTTGTGTGATGTTGTCTAACAAATAATGTTGTTTTGTGATATTAACAGTTTGACAACTTGTACGGTTGCCGTCACTCACTCCCCGATGGACTGATGAGAGCTACTGATGTGATGATTGCCGGAAAGGTTGCTGTTGTATGTGGATATGGAGATGTTGGCAAGGGTTGTGCTGCTGCATTGAAACAGGGTGGTGCTCGTGTGATCGTGACTGAGATCGATCCAATTTGTGCACTTCAAGCTCTTATGGAAGGTCTTCAAGTCTTGACTTTGGAGGATGTTATCTCCGAGGCTGACATCTTTGTTACCACAACCGGTAACAAAGACATTATCATGGTTAGTGACATGAAGAAAATGAAGAACAATGCCATTGTCTGCAATATTGGTCACTTCGACAATGAAATTGACATGCATGGACTTGAGACTTACCCTGGTGTGAAGCGCATCACAATTAAGCCACAAACTGACAGATGGGTTTTCCCTGAAACCAAAACTGGCATCATTGTCTTGGCCGAAGGTCGTTTGATGAACTTGGGATGTGCTACTGGACACCCTAGTTTCGTCATGTCATGCTCCTTCACCAACCAAGTCATTGCCCAGATTGAGTTGTGGAAGGAAAAGACTTCCGGCAAGTATGAAAAGAAGGTATATGTTTTGCCTAAGCACCTTGATGAGAAGGTTGCTGCTCTTCATCTTGGCCAGCTTGGAGCTAAGCTCACCAAGCTTTCCAAAGATCAGGCAGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTATTGA

Protein sequence

>MS.gene79895.t1

MALLVETTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCSERALDWGPGGGPDLIVDDGGDVTLLIHEGVKAEEVFEKTGQLPDPSSTDNAEMQIVLTIIRDGLKTDPKRYQKMKTRIVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQGGARVIVTEIDPICALQALMEGLQVLTLEDVISEADIFVTTTGNKDIIMVSDMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETKTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQIELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY