Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79895.t1 | P50246.1 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 2.10E-281 | 977.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79895.t1 | P50246 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 5.0e-284 | 977.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79895.t1 | Q84RD8 | 99.2 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 6.3e-280 | 972.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050290 | MS.gene79895 | PPI |
MS.gene013534 | MS.gene79895 | PPI |
MS.gene045356 | MS.gene79895 | PPI |
MS.gene034846 | MS.gene79895 | PPI |
MS.gene24706 | MS.gene79895 | PPI |
MS.gene06645 | MS.gene79895 | PPI |
MS.gene81765 | MS.gene79895 | PPI |
MS.gene77533 | MS.gene79895 | PPI |
MS.gene056896 | MS.gene79895 | PPI |
MS.gene007189 | MS.gene79895 | PPI |
MS.gene057206 | MS.gene79895 | PPI |
MS.gene75668 | MS.gene79895 | PPI |
MS.gene79895 | MS.gene050252 | PPI |
MS.gene06859 | MS.gene79895 | PPI |
MS.gene79895 | MS.gene045356 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79895.t1 | MTR_3g084340 | 99.175 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1001 |
MS.gene79895.t1 | MTR_8g083090 | 91.753 | 485 | 40 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79895.t1 | AT4G13940 | 91.134 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
MS.gene79895.t1 | AT3G23810 | 89.897 | 485 | 49 | 0 | 1 | 485 | 1 | 485 | 0.0 | 904 |
MS.gene79895.t1 | AT4G13940 | 82.268 | 485 | 41 | 1 | 1 | 485 | 1 | 440 | 0.0 | 814 |
MS.gene79895.t1 | AT4G13940 | 89.532 | 363 | 38 | 0 | 123 | 485 | 2 | 364 | 0.0 | 693 |
MS.gene79895.t1 | AT4G13940 | 91.558 | 308 | 26 | 0 | 1 | 308 | 1 | 308 | 0.0 | 573 |
Find 150 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTGCACTTCAAGCTCTTA+TGG | 0.246520 | 3.1:-65405254 | MS.gene79895:CDS |
CAAGACAATGATGCCAGTTT+TGG | 0.273063 | 3.1:+65404994 | None:intergenic |
CATGATAATGTCTTTGTTAC+CGG | 0.281658 | 3.1:+65405168 | None:intergenic |
TTTCCTTCCACAACTCAATC+TGG | 0.282987 | 3.1:+65404885 | None:intergenic |
GCTCTGAACGTGCTCTTGAC+TGG | 0.284203 | 3.1:-65406443 | MS.gene79895:CDS |
TTCATCTTCTGGTACCTCTT+AGG | 0.306451 | 3.1:+65406237 | None:intergenic |
CTCTGAACGTGCTCTTGACT+GGG | 0.308933 | 3.1:-65406442 | MS.gene79895:CDS |
CAATTCTAGTCTTCATCTTC+TGG | 0.309837 | 3.1:+65406226 | None:intergenic |
ATCCATCGCAATGGCGTTGC+TGG | 0.321329 | 3.1:-65406811 | None:intergenic |
CGAAGGTCGTTTGATGAACT+TGG | 0.331691 | 3.1:-65404969 | MS.gene79895:CDS |
CTTCAGCCTTAACACCTTCA+TGG | 0.332449 | 3.1:+65406361 | None:intergenic |
GATGTAATCTGCCTGATCTT+TGG | 0.335270 | 3.1:+65404754 | None:intergenic |
AATGCCATTGTCTGCAATAT+TGG | 0.338131 | 3.1:-65405118 | MS.gene79895:CDS |
ATGTCCTGCCGAACCGAATT+CGG | 0.339299 | 3.1:-65406684 | MS.gene79895:CDS |
AGAGCTTGAAGTGCACAAAT+TGG | 0.344753 | 3.1:+65405259 | None:intergenic |
CTTCAAACCATCTCTGATAA+TGG | 0.351075 | 3.1:+65406266 | None:intergenic |
CTTCAGCGCCGAGAGCGGTT+AGG | 0.352649 | 3.1:+65406583 | None:intergenic |
ATGAACTTGGGATGTGCTAC+TGG | 0.363624 | 3.1:-65404956 | MS.gene79895:CDS |
GTTGCTGTTGTATGTGGATA+TGG | 0.374302 | 3.1:-65405352 | MS.gene79895:CDS |
CTGTAGTGAGCAGGCTTGTA+TGG | 0.381561 | 3.1:+65404713 | None:intergenic |
CGTGCTCTTGACTGGGGTCC+TGG | 0.385588 | 3.1:-65406435 | MS.gene79895:CDS |
ACATACAACAGCAACCTTTC+CGG | 0.388605 | 3.1:+65405360 | None:intergenic |
GGGTTGGGATGGACCGAATT+CGG | 0.390190 | 3.1:+65406671 | None:intergenic |
GCTCTTCATCTTGGCCAGCT+TGG | 0.394343 | 3.1:-65404797 | MS.gene79895:CDS |
GACATCTTTGTTACCACAAC+CGG | 0.395286 | 3.1:-65405187 | MS.gene79895:CDS |
TTGTGCTGCTGCATTGAAAC+AGG | 0.399578 | 3.1:-65405314 | MS.gene79895:CDS |
CTTGACTGGGGTCCTGGTGG+TGG | 0.403597 | 3.1:-65406429 | MS.gene79895:CDS |
TCTAGCACCTTTGAAGGGTT+GGG | 0.410769 | 3.1:+65406656 | None:intergenic |
AAGGTTGCTGCTCTTCATCT+TGG | 0.415226 | 3.1:-65404806 | MS.gene79895:CDS |
TTTCGATGAGGACGGCGGTT+TGG | 0.421389 | 3.1:+65406607 | None:intergenic |
TTCTAGCACCTTTGAAGGGT+TGG | 0.427916 | 3.1:+65406655 | None:intergenic |
TTCAGCGCCGAGAGCGGTTA+GGG | 0.433864 | 3.1:+65406584 | None:intergenic |
TTTGATCCATGAAGGTGTTA+AGG | 0.439226 | 3.1:-65406367 | MS.gene79895:CDS |
GAGCATGACATGACGAAACT+AGG | 0.439355 | 3.1:+65404929 | None:intergenic |
GGTGATTCTAGCACCTTTGA+AGG | 0.443699 | 3.1:+65406650 | None:intergenic |
GAGACGGCCGAAGTCGGCTT+GGG | 0.446562 | 3.1:+65406743 | None:intergenic |
TTGTGGAAGGAAAAGACTTC+CGG | 0.448452 | 3.1:-65404875 | MS.gene79895:CDS |
GCTACTGATGTGATGATTGC+CGG | 0.449909 | 3.1:-65405379 | MS.gene79895:CDS |
GAGTACCACTGGCTTGCATC+TGG | 0.455608 | 3.1:+65406160 | None:intergenic |
TGCCTGATCTTTGGAAAGCT+TGG | 0.455962 | 3.1:+65404763 | None:intergenic |
AAGATGAAGACTAGAATTGT+TGG | 0.457319 | 3.1:-65406222 | MS.gene79895:CDS |
CACTAGCGGCCGCGAATACA+AGG | 0.463037 | 3.1:-65406778 | MS.gene79895:CDS |
GTAGCTCTCATCAGTCCATC+GGG | 0.463967 | 3.1:+65405397 | None:intergenic |
CACCAAGCTTTCCAAAGATC+AGG | 0.467170 | 3.1:-65404765 | MS.gene79895:CDS |
GGCTTGTATGGACCCTCAAC+AGG | 0.474052 | 3.1:+65404725 | None:intergenic |
TACATCAGTGTGCCTGTTGA+GGG | 0.474583 | 3.1:-65404737 | MS.gene79895:CDS |
TTCCTTCCACAACTCAATCT+GGG | 0.478489 | 3.1:+65404886 | None:intergenic |
AGGTCTTCAAGTCTTGACTT+TGG | 0.482657 | 3.1:-65405230 | MS.gene79895:CDS |
CTCTCGGCGCTGAAGTCCGT+TGG | 0.484320 | 3.1:-65406575 | MS.gene79895:CDS |
CAAGTTCATCAAACGACCTT+CGG | 0.485613 | 3.1:+65404970 | None:intergenic |
AATGTCTTTGTTACCGGTTG+TGG | 0.486256 | 3.1:+65405174 | None:intergenic |
AAAACCCATCTGTCAGTTTG+TGG | 0.488904 | 3.1:+65405025 | None:intergenic |
CGAGACGGCCGAAGTCGGCT+TGG | 0.488999 | 3.1:+65406742 | None:intergenic |
GTGAAACTCTTCAAGAGTAT+TGG | 0.491446 | 3.1:-65406470 | MS.gene79895:CDS |
AAACTACCACTGGTGTTAAG+AGG | 0.493018 | 3.1:-65406188 | MS.gene79895:CDS |
TCTTCAAGTCTTGACTTTGG+AGG | 0.494059 | 3.1:-65405227 | MS.gene79895:CDS |
TTGAGTGGAGAAGATGTTGC+AGG | 0.498069 | 3.1:+65406548 | None:intergenic |
GTTCTTACCATTATCAGAGA+TGG | 0.499328 | 3.1:-65406273 | MS.gene79895:CDS |
GATTGTCATGTGAAGTGAAC+CGG | 0.499367 | 3.1:+65406629 | None:intergenic |
GCCTAAGCACCTTGATGAGA+AGG | 0.499877 | 3.1:-65404825 | MS.gene79895:CDS |
CAAAACTGGCATCATTGTCT+TGG | 0.506187 | 3.1:-65404993 | MS.gene79895:CDS |
ATTGTGATGCGCTTCACACC+AGG | 0.516815 | 3.1:+65405052 | None:intergenic |
GGGATGGACCGAATTCGGTT+CGG | 0.518576 | 3.1:+65406676 | None:intergenic |
ATCGAAACCCTAACCGCTCT+CGG | 0.519237 | 3.1:-65406591 | MS.gene79895:CDS |
TGTCCTTGACCTTGTATTCG+CGG | 0.519525 | 3.1:+65406769 | None:intergenic |
ACAGCGCCGCCGTGTTCGCA+TGG | 0.523074 | 3.1:-65406497 | MS.gene79895:CDS |
TTCCGGCAAGTATGAAAAGA+AGG | 0.523649 | 3.1:-65404858 | MS.gene79895:CDS |
ACTCAATCTGGGCAATGACT+TGG | 0.524880 | 3.1:+65404897 | None:intergenic |
CCATCATCAACGATGAGATC+TGG | 0.525149 | 3.1:+65406405 | None:intergenic |
GTCACGAGCGATGGCAGCAG+CGG | 0.527010 | 3.1:+65406518 | None:intergenic |
GACATGTCCCAAGCCGACTT+CGG | 0.530150 | 3.1:-65406750 | MS.gene79895:CDS |
TAACAGTTTGACAACTTGTA+CGG | 0.530587 | 3.1:-65405436 | MS.gene79895:intron |
GAGTCATTGACATTGATAGC+AGG | 0.532386 | 3.1:+65406129 | None:intergenic |
CTTGTATTCGCGGCCGCTAG+TGG | 0.534197 | 3.1:+65406779 | None:intergenic |
CATACAAGCCTGCTCACTAC+AGG | 0.535609 | 3.1:-65404712 | MS.gene79895:CDS |
GGCATCATTGTCTTGGCCGA+AGG | 0.539009 | 3.1:-65404986 | MS.gene79895:CDS |
TAGACCGGGCATTTCGACTT+CGG | 0.540521 | 3.1:+65406707 | None:intergenic |
TTATCAGTGGAAGAAGGATC+AGG | 0.540967 | 3.1:+65406312 | None:intergenic |
TGCCGTCACTCACTCCCCGA+TGG | 0.543995 | 3.1:-65405412 | MS.gene79895:CDS |
TTCAAAGGTGCTAGAATCAC+CGG | 0.545328 | 3.1:-65406648 | MS.gene79895:CDS |
GACAATGAAATTGACATGCA+TGG | 0.548002 | 3.1:-65405088 | MS.gene79895:CDS |
GAGCAGCAACCTTCTCATCA+AGG | 0.548483 | 3.1:+65404816 | None:intergenic |
AGTAGCTCTCATCAGTCCAT+CGG | 0.549778 | 3.1:+65405396 | None:intergenic |
TGGACCGAATTCGGTTCGGC+AGG | 0.550451 | 3.1:+65406680 | None:intergenic |
TCTCAATACCTGTAGTGAGC+AGG | 0.551450 | 3.1:+65404704 | None:intergenic |
GTATGTGGATATGGAGATGT+TGG | 0.552952 | 3.1:-65405343 | MS.gene79895:CDS |
AAACTCTTCAAGAGTATTGG+TGG | 0.555528 | 3.1:-65406467 | MS.gene79895:CDS |
GGCAATGACTTGGTTGGTGA+AGG | 0.555648 | 3.1:+65404907 | None:intergenic |
TTACATCAGTGTGCCTGTTG+AGG | 0.557257 | 3.1:-65404738 | MS.gene79895:CDS |
TGGTGAGCTTAGCTCCAAGC+TGG | 0.561241 | 3.1:+65404783 | None:intergenic |
GATTTCGAGACGGCCGAAGT+CGG | 0.561398 | 3.1:+65406737 | None:intergenic |
GAAGGTCGTTTGATGAACTT+GGG | 0.567387 | 3.1:-65404968 | MS.gene79895:CDS |
TGAAGGTGTTAAGGCTGAAG+AGG | 0.568244 | 3.1:-65406358 | MS.gene79895:CDS |
CCAGATCTCATCGTTGATGA+TGG | 0.568308 | 3.1:-65406405 | MS.gene79895:CDS |
TGATGTGATGATTGCCGGAA+AGG | 0.572516 | 3.1:-65405374 | MS.gene79895:CDS |
GTCCATCGGGGAGTGAGTGA+CGG | 0.572655 | 3.1:+65405410 | None:intergenic |
GTTCGGCAGGACATTAGACC+GGG | 0.573271 | 3.1:+65406693 | None:intergenic |
GAGCGATGGCAGCAGCGGCG+TGG | 0.575591 | 3.1:+65406523 | None:intergenic |
GGAAAGGTTGCTGTTGTATG+TGG | 0.577058 | 3.1:-65405358 | MS.gene79895:CDS |
GGTTCGGCAGGACATTAGAC+CGG | 0.577241 | 3.1:+65406692 | None:intergenic |
TAAGCCACAAACTGACAGAT+GGG | 0.577992 | 3.1:-65405029 | MS.gene79895:CDS |
GCACCTTTGAAGGGTTGGGA+TGG | 0.581733 | 3.1:+65406660 | None:intergenic |
AGGGAACAAAAGAGTACCAC+TGG | 0.581899 | 3.1:+65406149 | None:intergenic |
GTTTGAAGACTGATCCTAAG+AGG | 0.582975 | 3.1:-65406251 | MS.gene79895:CDS |
GCACTTCAAGCTCTTATGGA+AGG | 0.583496 | 3.1:-65405250 | MS.gene79895:CDS |
TGCCCAGATTGAGTTGTGGA+AGG | 0.584564 | 3.1:-65404888 | MS.gene79895:CDS |
AGCAGCGGCGTGGTCTTGAG+TGG | 0.585227 | 3.1:+65406533 | None:intergenic |
CGGTAACAAAGACATTATCA+TGG | 0.586819 | 3.1:-65405167 | MS.gene79895:CDS |
TCAGCATTATCAGTGGAAGA+AGG | 0.586864 | 3.1:+65406306 | None:intergenic |
ACCTTCTCATCAAGGTGCTT+AGG | 0.587574 | 3.1:+65404824 | None:intergenic |
CTCGCCGAAGTCGAAATGCC+CGG | 0.588811 | 3.1:-65406711 | MS.gene79895:CDS |
GTATTCGCGGCCGCTAGTGG+TGG | 0.589620 | 3.1:+65406782 | None:intergenic |
GGTCCATCCCAACCCTTCAA+AGG | 0.590417 | 3.1:-65406663 | MS.gene79895:CDS |
GTGATTCTAGCACCTTTGAA+GGG | 0.592015 | 3.1:+65406651 | None:intergenic |
ATGAGATCTGGTCCACCACC+AGG | 0.593938 | 3.1:+65406417 | None:intergenic |
AGCATGACATGACGAAACTA+GGG | 0.597852 | 3.1:+65404930 | None:intergenic |
TTAAGCCACAAACTGACAGA+TGG | 0.599504 | 3.1:-65405030 | MS.gene79895:CDS |
TTCACCTTTCCATGCGAACA+CGG | 0.604306 | 3.1:+65406488 | None:intergenic |
GGCGGCGCTGTCACGAGCGA+TGG | 0.605675 | 3.1:+65406509 | None:intergenic |
GCCGCCGTGTTCGCATGGAA+AGG | 0.609488 | 3.1:-65406492 | MS.gene79895:CDS |
AGTCATTGACATTGATAGCA+GGG | 0.617293 | 3.1:+65406130 | None:intergenic |
GGTTAGGGTTTCGATGAGGA+CGG | 0.623279 | 3.1:+65406599 | None:intergenic |
CGGCCGCGAATACAAGGTCA+AGG | 0.626311 | 3.1:-65406772 | MS.gene79895:CDS |
TCATTGCCCAGATTGAGTTG+TGG | 0.630377 | 3.1:-65404892 | MS.gene79895:CDS |
TGGATATGGAGATGTTGGCA+AGG | 0.630605 | 3.1:-65405338 | MS.gene79895:CDS |
CTGCATCTCAGCATTATCAG+TGG | 0.631115 | 3.1:+65406299 | None:intergenic |
TGACTCTGTTACCAAGAGCA+AGG | 0.637085 | 3.1:-65406112 | MS.gene79895:intron |
GGTAACAAAGATGTCAGCCT+CGG | 0.637559 | 3.1:+65405195 | None:intergenic |
CGGCGAGCTCGATTTCGAGA+CGG | 0.639311 | 3.1:+65406727 | None:intergenic |
CTGGTTGAAACCACCACTAG+CGG | 0.640235 | 3.1:-65406792 | MS.gene79895:CDS |
GCTCTTGACTGGGGTCCTGG+TGG | 0.646422 | 3.1:-65406432 | MS.gene79895:CDS |
AATCTGGGCAATGACTTGGT+TGG | 0.646442 | 3.1:+65404901 | None:intergenic |
AGATGTTGCAGGAACACCAA+CGG | 0.647065 | 3.1:+65406559 | None:intergenic |
TTGTGATGCGCTTCACACCA+GGG | 0.649814 | 3.1:+65405053 | None:intergenic |
GTGACCAATATTGCAGACAA+TGG | 0.654212 | 3.1:+65405114 | None:intergenic |
CATGGACTTGAGACTTACCC+TGG | 0.655927 | 3.1:-65405070 | MS.gene79895:CDS |
GATCTCATCGTTGATGATGG+TGG | 0.656347 | 3.1:-65406402 | MS.gene79895:CDS |
GTAAAGCCTCTTAACACCAG+TGG | 0.656682 | 3.1:+65406182 | None:intergenic |
TGTGCTGCTGCATTGAAACA+GGG | 0.663521 | 3.1:-65405313 | MS.gene79895:CDS |
TCTGAACGTGCTCTTGACTG+GGG | 0.665456 | 3.1:-65406441 | MS.gene79895:CDS |
ACGGACTTCAGCGCCGAGAG+CGG | 0.666573 | 3.1:+65406578 | None:intergenic |
CTTTACCAGATGCAAGCCAG+TGG | 0.671517 | 3.1:-65406165 | MS.gene79895:CDS |
TTTGGAGGATGTTATCTCCG+AGG | 0.672766 | 3.1:-65405212 | MS.gene79895:CDS |
GGATATGGAGATGTTGGCAA+GGG | 0.675649 | 3.1:-65405337 | MS.gene79895:CDS |
TAGGGTTTCGATGAGGACGG+CGG | 0.676084 | 3.1:+65406602 | None:intergenic |
ACCTTTCCATGCGAACACGG+CGG | 0.684766 | 3.1:+65406491 | None:intergenic |
GTTTCTGAAGAAACTACCAC+TGG | 0.697565 | 3.1:-65406198 | MS.gene79895:CDS |
GAGCGGTTAGGGTTTCGATG+AGG | 0.727757 | 3.1:+65406595 | None:intergenic |
GCTGCTGCATTGAAACAGGG+TGG | 0.748869 | 3.1:-65405310 | MS.gene79895:CDS |
TAGCTCTCATCAGTCCATCG+GGG | 0.769557 | 3.1:+65405398 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAGTTTAATTGTCTA+GGG | - | chr3.1:65405929-65405948 | MS.gene79895:intron | 15.0% |
!!! | TTTTAAAAGTTTAATTGTCT+AGG | - | chr3.1:65405928-65405947 | MS.gene79895:intron | 15.0% |
!!! | TCAGTTATTTATTAGTTTGT+TGG | - | chr3.1:65405956-65405975 | MS.gene79895:intron | 20.0% |
!!! | TTCTTTCTTGTTTCTATTTT+TGG | - | chr3.1:65405427-65405446 | MS.gene79895:CDS | 20.0% |
! | AAAAAAATATACCTTGCTCT+TGG | + | chr3.1:65405409-65405428 | None:intergenic | 25.0% |
! | TGAAATTGCTAAATTGAGAT+GGG | - | chr3.1:65405564-65405583 | MS.gene79895:intron | 25.0% |
! | TTGAAATTGCTAAATTGAGA+TGG | - | chr3.1:65405563-65405582 | MS.gene79895:intron | 25.0% |
AAGATGAAGACTAGAATTGT+TGG | - | chr3.1:65405285-65405304 | MS.gene79895:CDS | 30.0% | |
CTTGGAATTGTCAAAAGAAA+AGG | - | chr3.1:65405763-65405782 | MS.gene79895:intron | 30.0% | |
GAATTGTCAAAAGAAAAGGT+TGG | - | chr3.1:65405767-65405786 | MS.gene79895:intron | 30.0% | |
TAACAGTTTGACAACTTGTA+CGG | - | chr3.1:65406071-65406090 | MS.gene79895:intron | 30.0% | |
TGTGATGTCATTATAGATCT+TGG | + | chr3.1:65405875-65405894 | None:intergenic | 30.0% | |
TTTGGTAGATCCCATAAAAT+GGG | - | chr3.1:65405587-65405606 | MS.gene79895:intron | 30.0% | |
TTTGTTGGAGAACAATAAGT+TGG | - | chr3.1:65405971-65405990 | MS.gene79895:intron | 30.0% | |
! | AATAACACTCTCCCATTTTA+TGG | + | chr3.1:65405601-65405620 | None:intergenic | 30.0% |
! | ATAACACTCTCCCATTTTAT+GGG | + | chr3.1:65405600-65405619 | None:intergenic | 30.0% |
! | CATGATAATGTCTTTGTTAC+CGG | + | chr3.1:65406342-65406361 | None:intergenic | 30.0% |
AATGCCATTGTCTGCAATAT+TGG | - | chr3.1:65406389-65406408 | MS.gene79895:CDS | 35.0% | |
CGGTAACAAAGACATTATCA+TGG | - | chr3.1:65406340-65406359 | MS.gene79895:CDS | 35.0% | |
CTTCAAACCATCTCTGATAA+TGG | + | chr3.1:65405244-65405263 | None:intergenic | 35.0% | |
GACAATGAAATTGACATGCA+TGG | - | chr3.1:65406419-65406438 | MS.gene79895:CDS | 35.0% | |
GTTAGACAACATCACACAAA+AGG | + | chr3.1:65406029-65406048 | None:intergenic | 35.0% | |
GTTCTTACCATTATCAGAGA+TGG | - | chr3.1:65405234-65405253 | MS.gene79895:CDS | 35.0% | |
GTTTGGTAGATCCCATAAAA+TGG | - | chr3.1:65405586-65405605 | MS.gene79895:intron | 35.0% | |
! | AGTCATTGACATTGATAGCA+GGG | + | chr3.1:65405380-65405399 | None:intergenic | 35.0% |
! | CAATTCTAGTCTTCATCTTC+TGG | + | chr3.1:65405284-65405303 | None:intergenic | 35.0% |
! | GACATCACACATTTGCTAAT+TGG | - | chr3.1:65405886-65405905 | MS.gene79895:intron | 35.0% |
! | GTGAAACTCTTCAAGAGTAT+TGG | - | chr3.1:65405037-65405056 | MS.gene79895:CDS | 35.0% |
! | TACCTTCTTTTCATACTTGC+CGG | + | chr3.1:65406654-65406673 | None:intergenic | 35.0% |
! | TGTCAAAAGAAAAGGTTGGT+TGG | - | chr3.1:65405771-65405790 | MS.gene79895:intron | 35.0% |
! | TTGCTAAATTGAGATGGGTT+TGG | - | chr3.1:65405569-65405588 | MS.gene79895:intron | 35.0% |
!! | AAACTCTTCAAGAGTATTGG+TGG | - | chr3.1:65405040-65405059 | MS.gene79895:CDS | 35.0% |
!! | TTTGATCCATGAAGGTGTTA+AGG | - | chr3.1:65405140-65405159 | MS.gene79895:CDS | 35.0% |
AAAACCCATCTGTCAGTTTG+TGG | + | chr3.1:65406485-65406504 | None:intergenic | 40.0% | |
ACATACAACAGCAACCTTTC+CGG | + | chr3.1:65406150-65406169 | None:intergenic | 40.0% | |
AGAGCTTGAAGTGCACAAAT+TGG | + | chr3.1:65406251-65406270 | None:intergenic | 40.0% | |
AGCATGACATGACGAAACTA+GGG | + | chr3.1:65406580-65406599 | None:intergenic | 40.0% | |
AGGTCTTCAAGTCTTGACTT+TGG | - | chr3.1:65406277-65406296 | MS.gene79895:CDS | 40.0% | |
CAAAACTGGCATCATTGTCT+TGG | - | chr3.1:65406514-65406533 | MS.gene79895:CDS | 40.0% | |
CAAGTTCATCAAACGACCTT+CGG | + | chr3.1:65406540-65406559 | None:intergenic | 40.0% | |
GAAGGTCGTTTGATGAACTT+GGG | - | chr3.1:65406539-65406558 | MS.gene79895:CDS | 40.0% | |
GACATCTTTGTTACCACAAC+CGG | - | chr3.1:65406320-65406339 | MS.gene79895:CDS | 40.0% | |
GATGTAATCTGCCTGATCTT+TGG | + | chr3.1:65406756-65406775 | None:intergenic | 40.0% | |
GATTGTCATGTGAAGTGAAC+CGG | + | chr3.1:65404881-65404900 | None:intergenic | 40.0% | |
GTATGTGGATATGGAGATGT+TGG | - | chr3.1:65406164-65406183 | MS.gene79895:CDS | 40.0% | |
GTGACCAATATTGCAGACAA+TGG | + | chr3.1:65406396-65406415 | None:intergenic | 40.0% | |
GTGATTCTAGCACCTTTGAA+GGG | + | chr3.1:65404859-65404878 | None:intergenic | 40.0% | |
GTTTGAAGACTGATCCTAAG+AGG | - | chr3.1:65405256-65405275 | MS.gene79895:CDS | 40.0% | |
TAAGCCACAAACTGACAGAT+GGG | - | chr3.1:65406478-65406497 | MS.gene79895:CDS | 40.0% | |
TCAGCATTATCAGTGGAAGA+AGG | + | chr3.1:65405204-65405223 | None:intergenic | 40.0% | |
TCTTCAAGTCTTGACTTTGG+AGG | - | chr3.1:65406280-65406299 | MS.gene79895:CDS | 40.0% | |
TTAAGCCACAAACTGACAGA+TGG | - | chr3.1:65406477-65406496 | MS.gene79895:CDS | 40.0% | |
TTATCAGTGGAAGAAGGATC+AGG | + | chr3.1:65405198-65405217 | None:intergenic | 40.0% | |
TTCATCTTCTGGTACCTCTT+AGG | + | chr3.1:65405273-65405292 | None:intergenic | 40.0% | |
TTCCGGCAAGTATGAAAAGA+AGG | - | chr3.1:65406649-65406668 | MS.gene79895:CDS | 40.0% | |
TTCCTTCCACAACTCAATCT+GGG | + | chr3.1:65406624-65406643 | None:intergenic | 40.0% | |
TTGTGCACTTCAAGCTCTTA+TGG | - | chr3.1:65406253-65406272 | MS.gene79895:CDS | 40.0% | |
TTGTGGAAGGAAAAGACTTC+CGG | - | chr3.1:65406632-65406651 | MS.gene79895:CDS | 40.0% | |
TTTCCTTCCACAACTCAATC+TGG | + | chr3.1:65406625-65406644 | None:intergenic | 40.0% | |
! | AAACTACCACTGGTGTTAAG+AGG | - | chr3.1:65405319-65405338 | MS.gene79895:CDS | 40.0% |
! | AATGTCTTTGTTACCGGTTG+TGG | + | chr3.1:65406336-65406355 | None:intergenic | 40.0% |
! | CAAGACAATGATGCCAGTTT+TGG | + | chr3.1:65406516-65406535 | None:intergenic | 40.0% |
! | GAGTCATTGACATTGATAGC+AGG | + | chr3.1:65405381-65405400 | None:intergenic | 40.0% |
! | GTTACGCTTTTGATCCATGA+AGG | - | chr3.1:65405132-65405151 | MS.gene79895:CDS | 40.0% |
! | GTTGCTGTTGTATGTGGATA+TGG | - | chr3.1:65406155-65406174 | MS.gene79895:CDS | 40.0% |
! | GTTTCTGAAGAAACTACCAC+TGG | - | chr3.1:65405309-65405328 | MS.gene79895:CDS | 40.0% |
! | GTTTTCCCTGAAACCAAAAC+TGG | - | chr3.1:65406500-65406519 | MS.gene79895:CDS | 40.0% |
!! | GAAGAGGTTTTTGAGAAGAC+TGG | - | chr3.1:65405165-65405184 | MS.gene79895:CDS | 40.0% |
!! | TTCAAAGGTGCTAGAATCAC+CGG | - | chr3.1:65404859-65404878 | MS.gene79895:CDS | 40.0% |
!!! | ATGATGCCAGTTTTGGTTTC+AGG | + | chr3.1:65406509-65406528 | None:intergenic | 40.0% |
!!! | TGATGCCAGTTTTGGTTTCA+GGG | + | chr3.1:65406508-65406527 | None:intergenic | 40.0% |
AAGGTTGCTGCTCTTCATCT+TGG | - | chr3.1:65406701-65406720 | MS.gene79895:CDS | 45.0% | |
ACTCAATCTGGGCAATGACT+TGG | + | chr3.1:65406613-65406632 | None:intergenic | 45.0% | |
AGATGTTGCAGGAACACCAA+CGG | + | chr3.1:65404951-65404970 | None:intergenic | 45.0% | |
AGTAGCTCTCATCAGTCCAT+CGG | + | chr3.1:65406114-65406133 | None:intergenic | 45.0% | |
ATGAACTTGGGATGTGCTAC+TGG | - | chr3.1:65406551-65406570 | MS.gene79895:CDS | 45.0% | |
CAAGTTCCAACCAACACTGT+TGG | + | chr3.1:65405747-65405766 | None:intergenic | 45.0% | |
CACCAAGCTTTCCAAAGATC+AGG | - | chr3.1:65406742-65406761 | MS.gene79895:CDS | 45.0% | |
CCATCATCAACGATGAGATC+TGG | + | chr3.1:65405105-65405124 | None:intergenic | 45.0% | |
CCATGTTGAACCAACAGTGT+TGG | - | chr3.1:65405734-65405753 | MS.gene79895:intron | 45.0% | |
CGAAGGTCGTTTGATGAACT+TGG | - | chr3.1:65406538-65406557 | MS.gene79895:CDS | 45.0% | |
CTGCATCTCAGCATTATCAG+TGG | + | chr3.1:65405211-65405230 | None:intergenic | 45.0% | |
CTTCAGCCTTAACACCTTCA+TGG | + | chr3.1:65405149-65405168 | None:intergenic | 45.0% | |
GAGCATGACATGACGAAACT+AGG | + | chr3.1:65406581-65406600 | None:intergenic | 45.0% | |
GCACTTCAAGCTCTTATGGA+AGG | - | chr3.1:65406257-65406276 | MS.gene79895:CDS | 45.0% | |
GCTACTGATGTGATGATTGC+CGG | - | chr3.1:65406128-65406147 | MS.gene79895:CDS | 45.0% | |
GGATATGGAGATGTTGGCAA+GGG | - | chr3.1:65406170-65406189 | MS.gene79895:CDS | 45.0% | |
GGTAACAAAGATGTCAGCCT+CGG | + | chr3.1:65406315-65406334 | None:intergenic | 45.0% | |
GGTGATTCTAGCACCTTTGA+AGG | + | chr3.1:65404860-65404879 | None:intergenic | 45.0% | |
GTAAAGCCTCTTAACACCAG+TGG | + | chr3.1:65405328-65405347 | None:intergenic | 45.0% | |
TACATCAGTGTGCCTGTTGA+GGG | - | chr3.1:65406770-65406789 | MS.gene79895:CDS | 45.0% | |
TGACTCTGTTACCAAGAGCA+AGG | - | chr3.1:65405395-65405414 | MS.gene79895:CDS | 45.0% | |
TGATGTGATGATTGCCGGAA+AGG | - | chr3.1:65406133-65406152 | MS.gene79895:CDS | 45.0% | |
TGGATATGGAGATGTTGGCA+AGG | - | chr3.1:65406169-65406188 | MS.gene79895:CDS | 45.0% | |
TGTCCTTGACCTTGTATTCG+CGG | + | chr3.1:65404741-65404760 | None:intergenic | 45.0% | |
TTACATCAGTGTGCCTGTTG+AGG | - | chr3.1:65406769-65406788 | MS.gene79895:CDS | 45.0% | |
TTCACCTTTCCATGCGAACA+CGG | + | chr3.1:65405022-65405041 | None:intergenic | 45.0% | |
TTGAGTGGAGAAGATGTTGC+AGG | + | chr3.1:65404962-65404981 | None:intergenic | 45.0% | |
TTTGGAGGATGTTATCTCCG+AGG | - | chr3.1:65406295-65406314 | MS.gene79895:CDS | 45.0% | |
! | ACCTTCTCATCAAGGTGCTT+AGG | + | chr3.1:65406686-65406705 | None:intergenic | 45.0% |
! | CCAGATCTCATCGTTGATGA+TGG | - | chr3.1:65405102-65405121 | MS.gene79895:CDS | 45.0% |
! | GGAAAGGTTGCTGTTGTATG+TGG | - | chr3.1:65406149-65406168 | MS.gene79895:CDS | 45.0% |
! | TCATTGCCCAGATTGAGTTG+TGG | - | chr3.1:65406615-65406634 | MS.gene79895:CDS | 45.0% |
! | TCTAGCACCTTTGAAGGGTT+GGG | + | chr3.1:65404854-65404873 | None:intergenic | 45.0% |
! | TGCCTGATCTTTGGAAAGCT+TGG | + | chr3.1:65406747-65406766 | None:intergenic | 45.0% |
! | TGTGCTGCTGCATTGAAACA+GGG | - | chr3.1:65406194-65406213 | MS.gene79895:CDS | 45.0% |
! | TTCTAGCACCTTTGAAGGGT+TGG | + | chr3.1:65404855-65404874 | None:intergenic | 45.0% |
! | TTGTGCTGCTGCATTGAAAC+AGG | - | chr3.1:65406193-65406212 | MS.gene79895:CDS | 45.0% |
!! | AATCTGGGCAATGACTTGGT+TGG | + | chr3.1:65406609-65406628 | None:intergenic | 45.0% |
!! | AGGGAACAAAAGAGTACCAC+TGG | + | chr3.1:65405361-65405380 | None:intergenic | 45.0% |
!! | CAACAGTGTTGGTTGGAACT+TGG | - | chr3.1:65405745-65405764 | MS.gene79895:intron | 45.0% |
!! | CCAACACTGTTGGTTCAACA+TGG | + | chr3.1:65405737-65405756 | None:intergenic | 45.0% |
!! | GATCTCATCGTTGATGATGG+TGG | - | chr3.1:65405105-65405124 | MS.gene79895:CDS | 45.0% |
!! | GTTGAACCAACAGTGTTGGT+TGG | - | chr3.1:65405738-65405757 | MS.gene79895:intron | 45.0% |
!! | TGAAGGTGTTAAGGCTGAAG+AGG | - | chr3.1:65405149-65405168 | MS.gene79895:CDS | 45.0% |
!!! | TTTAAAATAAATATAGATAA+TGG | + | chr3.1:65405915-65405934 | None:intergenic | 5.0% |
ATCGAAACCCTAACCGCTCT+CGG | - | chr3.1:65404916-65404935 | MS.gene79895:CDS | 50.0% | |
ATGTCCTGCCGAACCGAATT+CGG | - | chr3.1:65404823-65404842 | MS.gene79895:CDS | 50.0% | |
ATTGTGATGCGCTTCACACC+AGG | + | chr3.1:65406458-65406477 | None:intergenic | 50.0% | |
CATACAAGCCTGCTCACTAC+AGG | - | chr3.1:65406795-65406814 | MS.gene79895:CDS | 50.0% | |
CATGGACTTGAGACTTACCC+TGG | - | chr3.1:65406437-65406456 | MS.gene79895:CDS | 50.0% | |
CTCTGAACGTGCTCTTGACT+GGG | - | chr3.1:65405065-65405084 | MS.gene79895:CDS | 50.0% | |
CTGGTTGAAACCACCACTAG+CGG | - | chr3.1:65404715-65404734 | MS.gene79895:CDS | 50.0% | |
CTGTAGTGAGCAGGCTTGTA+TGG | + | chr3.1:65406797-65406816 | None:intergenic | 50.0% | |
CTTTACCAGATGCAAGCCAG+TGG | - | chr3.1:65405342-65405361 | MS.gene79895:CDS | 50.0% | |
GAGCAGCAACCTTCTCATCA+AGG | + | chr3.1:65406694-65406713 | None:intergenic | 50.0% | |
GCCTAAGCACCTTGATGAGA+AGG | - | chr3.1:65406682-65406701 | MS.gene79895:CDS | 50.0% | |
GGTTAGGGTTTCGATGAGGA+CGG | + | chr3.1:65404911-65404930 | None:intergenic | 50.0% | |
GTAGCTCTCATCAGTCCATC+GGG | + | chr3.1:65406113-65406132 | None:intergenic | 50.0% | |
TAGACCGGGCATTTCGACTT+CGG | + | chr3.1:65404803-65404822 | None:intergenic | 50.0% | |
TAGCTCTCATCAGTCCATCG+GGG | + | chr3.1:65406112-65406131 | None:intergenic | 50.0% | |
TCTGAACGTGCTCTTGACTG+GGG | - | chr3.1:65405066-65405085 | MS.gene79895:CDS | 50.0% | |
TTGTGATGCGCTTCACACCA+GGG | + | chr3.1:65406457-65406476 | None:intergenic | 50.0% | |
! | TGCCCAGATTGAGTTGTGGA+AGG | - | chr3.1:65406619-65406638 | MS.gene79895:CDS | 50.0% |
!! | GGCAATGACTTGGTTGGTGA+AGG | + | chr3.1:65406603-65406622 | None:intergenic | 50.0% |
ACCTTTCCATGCGAACACGG+CGG | + | chr3.1:65405019-65405038 | None:intergenic | 55.0% | |
ATGAGATCTGGTCCACCACC+AGG | + | chr3.1:65405093-65405112 | None:intergenic | 55.0% | |
GAGCGGTTAGGGTTTCGATG+AGG | + | chr3.1:65404915-65404934 | None:intergenic | 55.0% | |
GATTTCGAGACGGCCGAAGT+CGG | + | chr3.1:65404773-65404792 | None:intergenic | 55.0% | |
GCTCTTCATCTTGGCCAGCT+TGG | - | chr3.1:65406710-65406729 | MS.gene79895:CDS | 55.0% | |
GCTGCTGCATTGAAACAGGG+TGG | - | chr3.1:65406197-65406216 | MS.gene79895:CDS | 55.0% | |
GGCATCATTGTCTTGGCCGA+AGG | - | chr3.1:65406521-65406540 | MS.gene79895:CDS | 55.0% | |
GGCTTGTATGGACCCTCAAC+AGG | + | chr3.1:65406785-65406804 | None:intergenic | 55.0% | |
GGGATGGACCGAATTCGGTT+CGG | + | chr3.1:65404834-65404853 | None:intergenic | 55.0% | |
GGGTTGGGATGGACCGAATT+CGG | + | chr3.1:65404839-65404858 | None:intergenic | 55.0% | |
GGTCCATCCCAACCCTTCAA+AGG | - | chr3.1:65404844-65404863 | MS.gene79895:CDS | 55.0% | |
GGTTCGGCAGGACATTAGAC+CGG | + | chr3.1:65404818-65404837 | None:intergenic | 55.0% | |
GTTCGGCAGGACATTAGACC+GGG | + | chr3.1:65404817-65404836 | None:intergenic | 55.0% | |
TAGGGTTTCGATGAGGACGG+CGG | + | chr3.1:65404908-65404927 | None:intergenic | 55.0% | |
TGGTGAGCTTAGCTCCAAGC+TGG | + | chr3.1:65406727-65406746 | None:intergenic | 55.0% | |
TTTCGATGAGGACGGCGGTT+TGG | + | chr3.1:65404903-65404922 | None:intergenic | 55.0% | |
! | GACATGTCCCAAGCCGACTT+CGG | - | chr3.1:65404757-65404776 | MS.gene79895:CDS | 55.0% |
! | GCACCTTTGAAGGGTTGGGA+TGG | + | chr3.1:65404850-65404869 | None:intergenic | 55.0% |
! | GCTCTGAACGTGCTCTTGAC+TGG | - | chr3.1:65405064-65405083 | MS.gene79895:CDS | 55.0% |
!! | GAGTACCACTGGCTTGCATC+TGG | + | chr3.1:65405350-65405369 | None:intergenic | 55.0% |
CACTAGCGGCCGCGAATACA+AGG | - | chr3.1:65404729-65404748 | MS.gene79895:CDS | 60.0% | |
CGGCCGCGAATACAAGGTCA+AGG | - | chr3.1:65404735-65404754 | MS.gene79895:CDS | 60.0% | |
CGGCGAGCTCGATTTCGAGA+CGG | + | chr3.1:65404783-65404802 | None:intergenic | 60.0% | |
CTCGCCGAAGTCGAAATGCC+CGG | - | chr3.1:65404796-65404815 | MS.gene79895:CDS | 60.0% | |
CTTGTATTCGCGGCCGCTAG+TGG | + | chr3.1:65404731-65404750 | None:intergenic | 60.0% | |
GTCCATCGGGGAGTGAGTGA+CGG | + | chr3.1:65406100-65406119 | None:intergenic | 60.0% | |
! | TTCAGCGCCGAGAGCGGTTA+GGG | + | chr3.1:65404926-65404945 | None:intergenic | 60.0% |
!! | TGGACCGAATTCGGTTCGGC+AGG | + | chr3.1:65404830-65404849 | None:intergenic | 60.0% |
CGTGCTCTTGACTGGGGTCC+TGG | - | chr3.1:65405072-65405091 | MS.gene79895:CDS | 65.0% | |
CTTGACTGGGGTCCTGGTGG+TGG | - | chr3.1:65405078-65405097 | MS.gene79895:CDS | 65.0% | |
GCCGCCGTGTTCGCATGGAA+AGG | - | chr3.1:65405015-65405034 | MS.gene79895:CDS | 65.0% | |
GCTCTTGACTGGGGTCCTGG+TGG | - | chr3.1:65405075-65405094 | MS.gene79895:CDS | 65.0% | |
GTATTCGCGGCCGCTAGTGG+TGG | + | chr3.1:65404728-65404747 | None:intergenic | 65.0% | |
GTCACGAGCGATGGCAGCAG+CGG | + | chr3.1:65404992-65405011 | None:intergenic | 65.0% | |
TGCCGTCACTCACTCCCCGA+TGG | - | chr3.1:65406095-65406114 | MS.gene79895:intron | 65.0% | |
! | ACGGACTTCAGCGCCGAGAG+CGG | + | chr3.1:65404932-65404951 | None:intergenic | 65.0% |
! | AGCAGCGGCGTGGTCTTGAG+TGG | + | chr3.1:65404977-65404996 | None:intergenic | 65.0% |
! | CTCTCGGCGCTGAAGTCCGT+TGG | - | chr3.1:65404932-65404951 | MS.gene79895:CDS | 65.0% |
! | CTTCAGCGCCGAGAGCGGTT+AGG | + | chr3.1:65404927-65404946 | None:intergenic | 65.0% |
! | GAGACGGCCGAAGTCGGCTT+GGG | + | chr3.1:65404767-65404786 | None:intergenic | 65.0% |
ACAGCGCCGCCGTGTTCGCA+TGG | - | chr3.1:65405010-65405029 | MS.gene79895:CDS | 70.0% | |
CGAGACGGCCGAAGTCGGCT+TGG | + | chr3.1:65404768-65404787 | None:intergenic | 70.0% | |
GAGCGATGGCAGCAGCGGCG+TGG | + | chr3.1:65404987-65405006 | None:intergenic | 75.0% | |
GGCGGCGCTGTCACGAGCGA+TGG | + | chr3.1:65405001-65405020 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 65404706 | 65406823 | 65404706 | ID=MS.gene79895 |
chr3.1 | mRNA | 65404706 | 65406823 | 65404706 | ID=MS.gene79895.t1;Parent=MS.gene79895 |
chr3.1 | exon | 65406113 | 65406823 | 65406113 | ID=MS.gene79895.t1.exon1;Parent=MS.gene79895.t1 |
chr3.1 | CDS | 65406113 | 65406823 | 65406113 | ID=cds.MS.gene79895.t1;Parent=MS.gene79895.t1 |
chr3.1 | exon | 65404706 | 65405452 | 65404706 | ID=MS.gene79895.t1.exon2;Parent=MS.gene79895.t1 |
chr3.1 | CDS | 65404706 | 65405452 | 65404706 | ID=cds.MS.gene79895.t1;Parent=MS.gene79895.t1 |
Gene Sequence |
Protein sequence |