AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75668


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75668.t1 MTR_3g084340 99.175 485 4 0 1 485 1 485 0.0 1001
MS.gene75668.t1 MTR_8g083090 91.753 485 40 0 1 485 1 485 0.0 919
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75668.t1 AT4G13940 91.134 485 43 0 1 485 1 485 0.0 919
MS.gene75668.t1 AT3G23810 89.897 485 49 0 1 485 1 485 0.0 904
MS.gene75668.t1 AT4G13940 82.268 485 41 1 1 485 1 440 0.0 814
MS.gene75668.t1 AT4G13940 89.532 363 38 0 123 485 2 364 0.0 693
MS.gene75668.t1 AT4G13940 91.558 308 26 0 1 308 1 308 0.0 573

Find 150 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGCACTTCAAGCTCTTA+TGG 0.246520 3.3:+70631164 MS.gene75668:CDS
GATGTAATCTGCTTGATCTT+TGG 0.258494 3.3:-70631664 None:intergenic
CAAGACAATGATGCCAGTTT+TGG 0.273063 3.3:-70631424 None:intergenic
CATGATAATGTCTTTGTTAC+CGG 0.281658 3.3:-70631250 None:intergenic
TTTCCTTCCACAACTCAATC+TGG 0.282987 3.3:-70631533 None:intergenic
GCTCTGAACGTGCTCTTGAC+TGG 0.284203 3.3:+70629982 MS.gene75668:CDS
TTCATCTTCTGGTACCTCTT+AGG 0.306451 3.3:-70630188 None:intergenic
CTCTGAACGTGCTCTTGACT+GGG 0.308933 3.3:+70629983 MS.gene75668:CDS
CAATTCTAGTCTTCATCTTC+TGG 0.309837 3.3:-70630199 None:intergenic
ATCCATCGCAATGGCGTTGC+TGG 0.321329 3.3:+70629614 None:intergenic
CGAAGGTCGTTTGATGAACT+TGG 0.331691 3.3:+70631449 MS.gene75668:CDS
CTTCAGCCTTAACACCTTCA+TGG 0.332449 3.3:-70630064 None:intergenic
AATGCCATTGTCTGCAATAT+TGG 0.338131 3.3:+70631300 MS.gene75668:CDS
ATGTCCTGCCGAACCGAATT+CGG 0.339299 3.3:+70629741 MS.gene75668:CDS
AGAGCTTGAAGTGCACAAAT+TGG 0.344753 3.3:-70631159 None:intergenic
CTTCAAACCATCTCTGATAA+TGG 0.351075 3.3:-70630159 None:intergenic
CTTCAGCGCCGAGAGCGGTT+AGG 0.352649 3.3:-70629842 None:intergenic
GGAGCATGACATGACGAAAC+TGG 0.354812 3.3:-70631490 None:intergenic
ATGAACTTGGGATGTGCTAC+TGG 0.363624 3.3:+70631462 MS.gene75668:CDS
CTGTAGTGAGCAGGCTTGTA+TGG 0.374125 3.3:-70631705 None:intergenic
GTTGCTGTTGTATGTGGTTA+TGG 0.380098 3.3:+70631066 MS.gene75668:CDS
CGTGCTCTTGACTGGGGTCC+TGG 0.385588 3.3:+70629990 MS.gene75668:CDS
ACATACAACAGCAACCTTTC+CGG 0.388605 3.3:-70631058 None:intergenic
GGGTTGGGATGGACCGAATT+CGG 0.390190 3.3:-70629754 None:intergenic
GCTCTTCATCTTGGCCAGCT+TGG 0.394343 3.3:+70631621 MS.gene75668:CDS
GACATCTTTGTTACCACAAC+CGG 0.395286 3.3:+70631231 MS.gene75668:CDS
TTGTGCTGCTGCATTGAAAC+AGG 0.399578 3.3:+70631104 MS.gene75668:CDS
TGCTTGATCTTTGGAAAGCT+TGG 0.399876 3.3:-70631655 None:intergenic
CTTGACTGGGGTCCTGGTGG+TGG 0.403597 3.3:+70629996 MS.gene75668:CDS
TCTAGCACCTTTGAAGGGTT+GGG 0.410769 3.3:-70629769 None:intergenic
AAGGTTGCTGCTCTTCATCT+TGG 0.415226 3.3:+70631612 MS.gene75668:CDS
TTTCGATGAGGACGGCGGTT+TGG 0.421389 3.3:-70629818 None:intergenic
TTCTAGCACCTTTGAAGGGT+TGG 0.427916 3.3:-70629770 None:intergenic
TTCAGCGCCGAGAGCGGTTA+GGG 0.433864 3.3:-70629841 None:intergenic
TTTGATCCATGAAGGTGTTA+AGG 0.439226 3.3:+70630058 MS.gene75668:CDS
GGTGATTCTAGCACCTTTGA+AGG 0.443699 3.3:-70629775 None:intergenic
GAGACGGCCGAAGTCGGCTT+GGG 0.446562 3.3:-70629682 None:intergenic
TTGTGGAAGGAAAAGACTTC+CGG 0.448452 3.3:+70631543 MS.gene75668:CDS
GCTACTGATGTGATGATTGC+CGG 0.449909 3.3:+70631039 MS.gene75668:CDS
GAGTACCACTGGCTTGCATC+TGG 0.455608 3.3:-70630265 None:intergenic
AAGATGAAGACTAGAATTGT+TGG 0.457319 3.3:+70630203 MS.gene75668:CDS
CACTAGCGGCCGCGAATACA+AGG 0.463037 3.3:+70629647 MS.gene75668:CDS
GTAGCTCTCATCAGTCCATC+GGG 0.463967 3.3:-70631021 None:intergenic
GGCTTGTATGGACCCTCAAC+AGG 0.474052 3.3:-70631693 None:intergenic
TACATCAGTGTGCCTGTTGA+GGG 0.474583 3.3:+70631681 MS.gene75668:CDS
TTCCTTCCACAACTCAATCT+GGG 0.478489 3.3:-70631532 None:intergenic
AGGTCTTCAAGTCTTGACTT+TGG 0.482657 3.3:+70631188 MS.gene75668:CDS
CTCTCGGCGCTGAAGTCCGT+TGG 0.484320 3.3:+70629850 MS.gene75668:CDS
CAAGTTCATCAAACGACCTT+CGG 0.485613 3.3:-70631448 None:intergenic
AATGTCTTTGTTACCGGTTG+TGG 0.486256 3.3:-70631244 None:intergenic
AAAACCCATCTGTCAGTTTG+TGG 0.488904 3.3:-70631393 None:intergenic
CGAGACGGCCGAAGTCGGCT+TGG 0.488999 3.3:-70629683 None:intergenic
GTGAAACTCTTCAAGAGTAT+TGG 0.491446 3.3:+70629955 MS.gene75668:CDS
AAACTACCACTGGTGTTAAG+AGG 0.493018 3.3:+70630237 MS.gene75668:CDS
TCTTCAAGTCTTGACTTTGG+AGG 0.494059 3.3:+70631191 MS.gene75668:CDS
TTGAGTGGAGAAGATGTTGC+AGG 0.498069 3.3:-70629877 None:intergenic
GTTCTTACCATTATCAGAGA+TGG 0.499328 3.3:+70630152 MS.gene75668:CDS
GATTGTCATGTGAAGTGAAC+CGG 0.499367 3.3:-70629796 None:intergenic
GCCTAAGCACCTTGATGAGA+AGG 0.499877 3.3:+70631593 MS.gene75668:CDS
CAAAACTGGCATCATTGTCT+TGG 0.506187 3.3:+70631425 MS.gene75668:CDS
GAGCATGACATGACGAAACT+GGG 0.509921 3.3:-70631489 None:intergenic
ATTGTGATGCGCTTCACACC+AGG 0.516815 3.3:-70631366 None:intergenic
GGGATGGACCGAATTCGGTT+CGG 0.518576 3.3:-70629749 None:intergenic
ATCGAAACCCTAACCGCTCT+CGG 0.519237 3.3:+70629834 MS.gene75668:CDS
TGTCCTTGACCTTGTATTCG+CGG 0.519525 3.3:-70629656 None:intergenic
ACAGCGCCGCCGTGTTCGCA+TGG 0.523074 3.3:+70629928 MS.gene75668:CDS
TTCCGGCAAGTATGAAAAGA+AGG 0.523649 3.3:+70631560 MS.gene75668:CDS
ACTCAATCTGGGCAATGACT+TGG 0.524880 3.3:-70631521 None:intergenic
CCATCATCAACGATGAGATC+TGG 0.525149 3.3:-70630020 None:intergenic
GTCACGAGCGATGGCAGCAG+CGG 0.527010 3.3:-70629907 None:intergenic
GACATGTCCCAAGCCGACTT+CGG 0.530150 3.3:+70629675 MS.gene75668:CDS
TAACAGTTTGACAACTTGTA+CGG 0.530587 3.3:+70630982 MS.gene75668:intron
GAGTCATTGACATTGATAGC+AGG 0.532386 3.3:-70630296 None:intergenic
CTTGTATTCGCGGCCGCTAG+TGG 0.534197 3.3:-70629646 None:intergenic
CATACAAGCCTGCTCACTAC+AGG 0.535609 3.3:+70631706 MS.gene75668:CDS
GGCATCATTGTCTTGGCCGA+AGG 0.539009 3.3:+70631432 MS.gene75668:CDS
GTATGTGGTTATGGAGATGT+TGG 0.539146 3.3:+70631075 MS.gene75668:CDS
TAGACCGGGCATTTCGACTT+CGG 0.540521 3.3:-70629718 None:intergenic
TTATCAGTGGAAGAAGGATC+AGG 0.540967 3.3:-70630113 None:intergenic
TGCCGTCACTCACTCCCCGA+TGG 0.543995 3.3:+70631006 MS.gene75668:CDS
TTCAAAGGTGCTAGAATCAC+CGG 0.545328 3.3:+70629777 MS.gene75668:CDS
GACAATGAAATTGACATGCA+TGG 0.548002 3.3:+70631330 MS.gene75668:CDS
GAGCAGCAACCTTCTCATCA+AGG 0.548483 3.3:-70631602 None:intergenic
AGTAGCTCTCATCAGTCCAT+CGG 0.549778 3.3:-70631022 None:intergenic
TGGACCGAATTCGGTTCGGC+AGG 0.550451 3.3:-70629745 None:intergenic
TGGTGAGTTTAGCTCCAAGC+TGG 0.552972 3.3:-70631635 None:intergenic
AAACTCTTCAAGAGTATTGG+TGG 0.555528 3.3:+70629958 MS.gene75668:CDS
GGCAATGACTTGGTTGGTGA+AGG 0.555648 3.3:-70631511 None:intergenic
TCTCAGTACCTGTAGTGAGC+AGG 0.556638 3.3:-70631714 None:intergenic
TTACATCAGTGTGCCTGTTG+AGG 0.557257 3.3:+70631680 MS.gene75668:CDS
GATTTCGAGACGGCCGAAGT+CGG 0.561398 3.3:-70629688 None:intergenic
GAAGGTCGTTTGATGAACTT+GGG 0.567387 3.3:+70631450 MS.gene75668:CDS
TGAAGGTGTTAAGGCTGAAG+AGG 0.568244 3.3:+70630067 MS.gene75668:CDS
CCAGATCTCATCGTTGATGA+TGG 0.568308 3.3:+70630020 MS.gene75668:CDS
TGATGTGATGATTGCCGGAA+AGG 0.572516 3.3:+70631044 MS.gene75668:CDS
GTCCATCGGGGAGTGAGTGA+CGG 0.572655 3.3:-70631008 None:intergenic
GTTCGGCAGGACATTAGACC+GGG 0.573271 3.3:-70629732 None:intergenic
GGAAAGGTTGCTGTTGTATG+TGG 0.573631 3.3:+70631060 MS.gene75668:CDS
GAGCGATGGCAGCAGCGGCG+TGG 0.575591 3.3:-70629902 None:intergenic
GGTTCGGCAGGACATTAGAC+CGG 0.577241 3.3:-70629733 None:intergenic
TAAGCCACAAACTGACAGAT+GGG 0.577992 3.3:+70631389 MS.gene75668:CDS
GCACCTTTGAAGGGTTGGGA+TGG 0.581733 3.3:-70629765 None:intergenic
AGGGAACAAAAGAGTACCAC+TGG 0.581899 3.3:-70630276 None:intergenic
GTTTGAAGACTGATCCTAAG+AGG 0.582975 3.3:+70630174 MS.gene75668:CDS
GCACTTCAAGCTCTTATGGA+AGG 0.583496 3.3:+70631168 MS.gene75668:CDS
TGCCCAGATTGAGTTGTGGA+AGG 0.584564 3.3:+70631530 MS.gene75668:CDS
AGCAGCGGCGTGGTCTTGAG+TGG 0.585227 3.3:-70629892 None:intergenic
CGGTAACAAAGACATTATCA+TGG 0.586819 3.3:+70631251 MS.gene75668:CDS
TCAGCATTATCAGTGGAAGA+AGG 0.586864 3.3:-70630119 None:intergenic
ACCTTCTCATCAAGGTGCTT+AGG 0.587574 3.3:-70631594 None:intergenic
CTCGCCGAAGTCGAAATGCC+CGG 0.588811 3.3:+70629714 MS.gene75668:CDS
GTATTCGCGGCCGCTAGTGG+TGG 0.589620 3.3:-70629643 None:intergenic
GGTCCATCCCAACCCTTCAA+AGG 0.590417 3.3:+70629762 MS.gene75668:CDS
GTGATTCTAGCACCTTTGAA+GGG 0.592015 3.3:-70629774 None:intergenic
ATGAGATCTGGTCCACCACC+AGG 0.593938 3.3:-70630008 None:intergenic
TTAAGCCACAAACTGACAGA+TGG 0.599504 3.3:+70631388 MS.gene75668:CDS
TGGTTATGGAGATGTTGGCA+AGG 0.602291 3.3:+70631080 MS.gene75668:CDS
TTCACCTTTCCATGCGAACA+CGG 0.604306 3.3:-70629937 None:intergenic
GGCGGCGCTGTCACGAGCGA+TGG 0.605675 3.3:-70629916 None:intergenic
GCCGCCGTGTTCGCATGGAA+AGG 0.609488 3.3:+70629933 MS.gene75668:CDS
AGTCATTGACATTGATAGCA+GGG 0.617293 3.3:-70630295 None:intergenic
GGTTAGGGTTTCGATGAGGA+CGG 0.623279 3.3:-70629826 None:intergenic
CGGCCGCGAATACAAGGTCA+AGG 0.626311 3.3:+70629653 MS.gene75668:CDS
TCATTGCCCAGATTGAGTTG+TGG 0.630377 3.3:+70631526 MS.gene75668:CDS
CTGCATCTCAGCATTATCAG+TGG 0.631115 3.3:-70630126 None:intergenic
GGTTATGGAGATGTTGGCAA+GGG 0.635999 3.3:+70631081 MS.gene75668:CDS
TGACTCTGTTACCAAGAGCA+AGG 0.637085 3.3:+70630313 MS.gene75668:CDS
GGTAACAAAGATGTCAGCCT+CGG 0.637559 3.3:-70631223 None:intergenic
CGGCGAGCTCGATTTCGAGA+CGG 0.639311 3.3:-70629698 None:intergenic
CTGGTTGAAACCACCACTAG+CGG 0.640235 3.3:+70629633 MS.gene75668:CDS
GCTCTTGACTGGGGTCCTGG+TGG 0.646422 3.3:+70629993 MS.gene75668:CDS
AATCTGGGCAATGACTTGGT+TGG 0.646442 3.3:-70631517 None:intergenic
AGATGTTGCAGGAACACCAA+CGG 0.647065 3.3:-70629866 None:intergenic
TTGTGATGCGCTTCACACCA+GGG 0.649814 3.3:-70631365 None:intergenic
GTGACCAATATTGCAGACAA+TGG 0.654212 3.3:-70631304 None:intergenic
CATGGACTTGAGACTTACCC+TGG 0.655927 3.3:+70631348 MS.gene75668:CDS
GATCTCATCGTTGATGATGG+TGG 0.656347 3.3:+70630023 MS.gene75668:CDS
GTAAAGCCTCTTAACACCAG+TGG 0.656682 3.3:-70630243 None:intergenic
TGTGCTGCTGCATTGAAACA+GGG 0.663521 3.3:+70631105 MS.gene75668:CDS
TCTGAACGTGCTCTTGACTG+GGG 0.665456 3.3:+70629984 MS.gene75668:CDS
ACGGACTTCAGCGCCGAGAG+CGG 0.666573 3.3:-70629847 None:intergenic
CTTTACCAGATGCAAGCCAG+TGG 0.671517 3.3:+70630260 MS.gene75668:CDS
TTTGGAGGATGTTATCTCCG+AGG 0.672766 3.3:+70631206 MS.gene75668:CDS
TAGGGTTTCGATGAGGACGG+CGG 0.676084 3.3:-70629823 None:intergenic
ACCTTTCCATGCGAACACGG+CGG 0.684766 3.3:-70629934 None:intergenic
GTTTCTGAAGAAACTACCAC+TGG 0.697565 3.3:+70630227 MS.gene75668:CDS
AGCATGACATGACGAAACTG+GGG 0.716423 3.3:-70631488 None:intergenic
GAGCGGTTAGGGTTTCGATG+AGG 0.727757 3.3:-70629830 None:intergenic
GCTGCTGCATTGAAACAGGG+TGG 0.758030 3.3:+70631108 MS.gene75668:CDS
TAGCTCTCATCAGTCCATCG+GGG 0.769557 3.3:-70631020 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAGTTTAATTGTCTA+GGG + chr3.3:70630840-70630859 MS.gene75668:intron 15.0%
!!! TTTTAAAAGTTTAATTGTCT+AGG + chr3.3:70630839-70630858 MS.gene75668:intron 15.0%
!!! TCAGTTATTTATTAGTTTGT+TGG + chr3.3:70630867-70630886 MS.gene75668:intron 20.0%
!!! TTCTTTCTTGTTTCTATTTT+TGG + chr3.3:70630345-70630364 MS.gene75668:intron 20.0%
! AAAAAAATATACCTTGCTCT+TGG - chr3.3:70630327-70630346 None:intergenic 25.0%
! TGAAATTGCTAAATTGAGAT+GGG + chr3.3:70630482-70630501 MS.gene75668:intron 25.0%
! TTGAAATTGCTAAATTGAGA+TGG + chr3.3:70630481-70630500 MS.gene75668:intron 25.0%
AAGATGAAGACTAGAATTGT+TGG + chr3.3:70630203-70630222 MS.gene75668:CDS 30.0%
CTTGGAATTGTCAAAAGAAA+AGG + chr3.3:70630674-70630693 MS.gene75668:intron 30.0%
GAATTGTCAAAAGAAAAGGT+TGG + chr3.3:70630678-70630697 MS.gene75668:intron 30.0%
TAACAGTTTGACAACTTGTA+CGG + chr3.3:70630982-70631001 MS.gene75668:intron 30.0%
TGTGATGTCATTATAGATCT+TGG - chr3.3:70630786-70630805 None:intergenic 30.0%
TTTGGTAGATCCCATAAAAT+GGG + chr3.3:70630505-70630524 MS.gene75668:intron 30.0%
TTTGTTGGAGAACAATAAGT+TGG + chr3.3:70630882-70630901 MS.gene75668:intron 30.0%
! AATAACACTCTCCCATTTTA+TGG - chr3.3:70630519-70630538 None:intergenic 30.0%
! ATAACACTCTCCCATTTTAT+GGG - chr3.3:70630518-70630537 None:intergenic 30.0%
! CATGATAATGTCTTTGTTAC+CGG - chr3.3:70631253-70631272 None:intergenic 30.0%
AATGCCATTGTCTGCAATAT+TGG + chr3.3:70631300-70631319 MS.gene75668:CDS 35.0%
CGGTAACAAAGACATTATCA+TGG + chr3.3:70631251-70631270 MS.gene75668:CDS 35.0%
CTTCAAACCATCTCTGATAA+TGG - chr3.3:70630162-70630181 None:intergenic 35.0%
GACAATGAAATTGACATGCA+TGG + chr3.3:70631330-70631349 MS.gene75668:CDS 35.0%
GATGTAATCTGCTTGATCTT+TGG - chr3.3:70631667-70631686 None:intergenic 35.0%
GTTAGACAACATCACACAAA+AGG - chr3.3:70630940-70630959 None:intergenic 35.0%
GTTCTTACCATTATCAGAGA+TGG + chr3.3:70630152-70630171 MS.gene75668:CDS 35.0%
GTTTGGTAGATCCCATAAAA+TGG + chr3.3:70630504-70630523 MS.gene75668:intron 35.0%
! AGTCATTGACATTGATAGCA+GGG - chr3.3:70630298-70630317 None:intergenic 35.0%
! CAATTCTAGTCTTCATCTTC+TGG - chr3.3:70630202-70630221 None:intergenic 35.0%
! GACATCACACATTTGCTAAT+TGG + chr3.3:70630797-70630816 MS.gene75668:intron 35.0%
! GTGAAACTCTTCAAGAGTAT+TGG + chr3.3:70629955-70629974 MS.gene75668:CDS 35.0%
! TACCTTCTTTTCATACTTGC+CGG - chr3.3:70631565-70631584 None:intergenic 35.0%
! TGTCAAAAGAAAAGGTTGGT+TGG + chr3.3:70630682-70630701 MS.gene75668:intron 35.0%
! TTGCTAAATTGAGATGGGTT+TGG + chr3.3:70630487-70630506 MS.gene75668:intron 35.0%
!! AAACTCTTCAAGAGTATTGG+TGG + chr3.3:70629958-70629977 MS.gene75668:CDS 35.0%
!! TTTGATCCATGAAGGTGTTA+AGG + chr3.3:70630058-70630077 MS.gene75668:CDS 35.0%
AAAACCCATCTGTCAGTTTG+TGG - chr3.3:70631396-70631415 None:intergenic 40.0%
ACATACAACAGCAACCTTTC+CGG - chr3.3:70631061-70631080 None:intergenic 40.0%
AGAGCTTGAAGTGCACAAAT+TGG - chr3.3:70631162-70631181 None:intergenic 40.0%
AGGTCTTCAAGTCTTGACTT+TGG + chr3.3:70631188-70631207 MS.gene75668:CDS 40.0%
CAAAACTGGCATCATTGTCT+TGG + chr3.3:70631425-70631444 MS.gene75668:CDS 40.0%
CAAGTTCATCAAACGACCTT+CGG - chr3.3:70631451-70631470 None:intergenic 40.0%
GAAGGTCGTTTGATGAACTT+GGG + chr3.3:70631450-70631469 MS.gene75668:CDS 40.0%
GACATCTTTGTTACCACAAC+CGG + chr3.3:70631231-70631250 MS.gene75668:CDS 40.0%
GATTGTCATGTGAAGTGAAC+CGG - chr3.3:70629799-70629818 None:intergenic 40.0%
GTATGTGGTTATGGAGATGT+TGG + chr3.3:70631075-70631094 MS.gene75668:CDS 40.0%
GTGACCAATATTGCAGACAA+TGG - chr3.3:70631307-70631326 None:intergenic 40.0%
GTGATTCTAGCACCTTTGAA+GGG - chr3.3:70629777-70629796 None:intergenic 40.0%
GTTTGAAGACTGATCCTAAG+AGG + chr3.3:70630174-70630193 MS.gene75668:CDS 40.0%
TAAGCCACAAACTGACAGAT+GGG + chr3.3:70631389-70631408 MS.gene75668:CDS 40.0%
TCAGCATTATCAGTGGAAGA+AGG - chr3.3:70630122-70630141 None:intergenic 40.0%
TCTTCAAGTCTTGACTTTGG+AGG + chr3.3:70631191-70631210 MS.gene75668:CDS 40.0%
TTAAGCCACAAACTGACAGA+TGG + chr3.3:70631388-70631407 MS.gene75668:CDS 40.0%
TTATCAGTGGAAGAAGGATC+AGG - chr3.3:70630116-70630135 None:intergenic 40.0%
TTCATCTTCTGGTACCTCTT+AGG - chr3.3:70630191-70630210 None:intergenic 40.0%
TTCCGGCAAGTATGAAAAGA+AGG + chr3.3:70631560-70631579 MS.gene75668:CDS 40.0%
TTCCTTCCACAACTCAATCT+GGG - chr3.3:70631535-70631554 None:intergenic 40.0%
TTGTGCACTTCAAGCTCTTA+TGG + chr3.3:70631164-70631183 MS.gene75668:CDS 40.0%
TTGTGGAAGGAAAAGACTTC+CGG + chr3.3:70631543-70631562 MS.gene75668:CDS 40.0%
TTTCCTTCCACAACTCAATC+TGG - chr3.3:70631536-70631555 None:intergenic 40.0%
! AAACTACCACTGGTGTTAAG+AGG + chr3.3:70630237-70630256 MS.gene75668:CDS 40.0%
! AATGTCTTTGTTACCGGTTG+TGG - chr3.3:70631247-70631266 None:intergenic 40.0%
! CAAGACAATGATGCCAGTTT+TGG - chr3.3:70631427-70631446 None:intergenic 40.0%
! GAGTCATTGACATTGATAGC+AGG - chr3.3:70630299-70630318 None:intergenic 40.0%
! GTTACGCTTTTGATCCATGA+AGG + chr3.3:70630050-70630069 MS.gene75668:CDS 40.0%
! GTTGCTGTTGTATGTGGTTA+TGG + chr3.3:70631066-70631085 MS.gene75668:CDS 40.0%
! GTTTCTGAAGAAACTACCAC+TGG + chr3.3:70630227-70630246 MS.gene75668:CDS 40.0%
! GTTTTCCCTGAAACCAAAAC+TGG + chr3.3:70631411-70631430 MS.gene75668:CDS 40.0%
! TGCTTGATCTTTGGAAAGCT+TGG - chr3.3:70631658-70631677 None:intergenic 40.0%
!! GAAGAGGTTTTTGAGAAGAC+TGG + chr3.3:70630083-70630102 MS.gene75668:CDS 40.0%
!! TTCAAAGGTGCTAGAATCAC+CGG + chr3.3:70629777-70629796 MS.gene75668:CDS 40.0%
!!! ATGATGCCAGTTTTGGTTTC+AGG - chr3.3:70631420-70631439 None:intergenic 40.0%
!!! TGATGCCAGTTTTGGTTTCA+GGG - chr3.3:70631419-70631438 None:intergenic 40.0%
AAGGTTGCTGCTCTTCATCT+TGG + chr3.3:70631612-70631631 MS.gene75668:CDS 45.0%
ACTCAATCTGGGCAATGACT+TGG - chr3.3:70631524-70631543 None:intergenic 45.0%
AGATGTTGCAGGAACACCAA+CGG - chr3.3:70629869-70629888 None:intergenic 45.0%
AGCATGACATGACGAAACTG+GGG - chr3.3:70631491-70631510 None:intergenic 45.0%
AGTAGCTCTCATCAGTCCAT+CGG - chr3.3:70631025-70631044 None:intergenic 45.0%
ATGAACTTGGGATGTGCTAC+TGG + chr3.3:70631462-70631481 MS.gene75668:CDS 45.0%
CAAGTTCCAACCAACACTGT+TGG - chr3.3:70630658-70630677 None:intergenic 45.0%
CCATCATCAACGATGAGATC+TGG - chr3.3:70630023-70630042 None:intergenic 45.0%
CGAAGGTCGTTTGATGAACT+TGG + chr3.3:70631449-70631468 MS.gene75668:CDS 45.0%
CTGCATCTCAGCATTATCAG+TGG - chr3.3:70630129-70630148 None:intergenic 45.0%
CTTCAGCCTTAACACCTTCA+TGG - chr3.3:70630067-70630086 None:intergenic 45.0%
GAGCATGACATGACGAAACT+GGG - chr3.3:70631492-70631511 None:intergenic 45.0%
GCACTTCAAGCTCTTATGGA+AGG + chr3.3:70631168-70631187 MS.gene75668:CDS 45.0%
GCTACTGATGTGATGATTGC+CGG + chr3.3:70631039-70631058 MS.gene75668:CDS 45.0%
GGTAACAAAGATGTCAGCCT+CGG - chr3.3:70631226-70631245 None:intergenic 45.0%
GGTGATTCTAGCACCTTTGA+AGG - chr3.3:70629778-70629797 None:intergenic 45.0%
GGTTATGGAGATGTTGGCAA+GGG + chr3.3:70631081-70631100 MS.gene75668:CDS 45.0%
GTAAAGCCTCTTAACACCAG+TGG - chr3.3:70630246-70630265 None:intergenic 45.0%
TACATCAGTGTGCCTGTTGA+GGG + chr3.3:70631681-70631700 MS.gene75668:CDS 45.0%
TGACTCTGTTACCAAGAGCA+AGG + chr3.3:70630313-70630332 MS.gene75668:CDS 45.0%
TGATGTGATGATTGCCGGAA+AGG + chr3.3:70631044-70631063 MS.gene75668:CDS 45.0%
TGGTTATGGAGATGTTGGCA+AGG + chr3.3:70631080-70631099 MS.gene75668:CDS 45.0%
TGTCCTTGACCTTGTATTCG+CGG - chr3.3:70629659-70629678 None:intergenic 45.0%
TTACATCAGTGTGCCTGTTG+AGG + chr3.3:70631680-70631699 MS.gene75668:CDS 45.0%
TTCACCTTTCCATGCGAACA+CGG - chr3.3:70629940-70629959 None:intergenic 45.0%
TTGAGTGGAGAAGATGTTGC+AGG - chr3.3:70629880-70629899 None:intergenic 45.0%
TTTGGAGGATGTTATCTCCG+AGG + chr3.3:70631206-70631225 MS.gene75668:CDS 45.0%
! ACCTTCTCATCAAGGTGCTT+AGG - chr3.3:70631597-70631616 None:intergenic 45.0%
! CCAGATCTCATCGTTGATGA+TGG + chr3.3:70630020-70630039 MS.gene75668:CDS 45.0%
! GGAAAGGTTGCTGTTGTATG+TGG + chr3.3:70631060-70631079 MS.gene75668:CDS 45.0%
! TCATTGCCCAGATTGAGTTG+TGG + chr3.3:70631526-70631545 MS.gene75668:CDS 45.0%
! TCTAGCACCTTTGAAGGGTT+GGG - chr3.3:70629772-70629791 None:intergenic 45.0%
! TGTGCTGCTGCATTGAAACA+GGG + chr3.3:70631105-70631124 MS.gene75668:CDS 45.0%
! TTCTAGCACCTTTGAAGGGT+TGG - chr3.3:70629773-70629792 None:intergenic 45.0%
! TTGTGCTGCTGCATTGAAAC+AGG + chr3.3:70631104-70631123 MS.gene75668:CDS 45.0%
!! AATCTGGGCAATGACTTGGT+TGG - chr3.3:70631520-70631539 None:intergenic 45.0%
!! AGGGAACAAAAGAGTACCAC+TGG - chr3.3:70630279-70630298 None:intergenic 45.0%
!! CAACAGTGTTGGTTGGAACT+TGG + chr3.3:70630656-70630675 MS.gene75668:intron 45.0%
!! CCAACACTGTTGGTTCAACA+CGG - chr3.3:70630648-70630667 None:intergenic 45.0%
!! GATCTCATCGTTGATGATGG+TGG + chr3.3:70630023-70630042 MS.gene75668:CDS 45.0%
!! GTTGAACCAACAGTGTTGGT+TGG + chr3.3:70630649-70630668 MS.gene75668:intron 45.0%
!! TGAAGGTGTTAAGGCTGAAG+AGG + chr3.3:70630067-70630086 MS.gene75668:CDS 45.0%
!!! TTTAAAATAAATATAGATAA+TGG - chr3.3:70630826-70630845 None:intergenic 5.0%
ATCGAAACCCTAACCGCTCT+CGG + chr3.3:70629834-70629853 MS.gene75668:CDS 50.0%
ATGTCCTGCCGAACCGAATT+CGG + chr3.3:70629741-70629760 MS.gene75668:CDS 50.0%
ATTGTGATGCGCTTCACACC+AGG - chr3.3:70631369-70631388 None:intergenic 50.0%
CATACAAGCCTGCTCACTAC+AGG + chr3.3:70631706-70631725 MS.gene75668:CDS 50.0%
CATGGACTTGAGACTTACCC+TGG + chr3.3:70631348-70631367 MS.gene75668:CDS 50.0%
CCGTGTTGAACCAACAGTGT+TGG + chr3.3:70630645-70630664 MS.gene75668:intron 50.0%
CTCTGAACGTGCTCTTGACT+GGG + chr3.3:70629983-70630002 MS.gene75668:CDS 50.0%
CTGGTTGAAACCACCACTAG+CGG + chr3.3:70629633-70629652 MS.gene75668:CDS 50.0%
CTGTAGTGAGCAGGCTTGTA+TGG - chr3.3:70631708-70631727 None:intergenic 50.0%
CTTTACCAGATGCAAGCCAG+TGG + chr3.3:70630260-70630279 MS.gene75668:CDS 50.0%
GAGCAGCAACCTTCTCATCA+AGG - chr3.3:70631605-70631624 None:intergenic 50.0%
GCCTAAGCACCTTGATGAGA+AGG + chr3.3:70631593-70631612 MS.gene75668:CDS 50.0%
GGAGCATGACATGACGAAAC+TGG - chr3.3:70631493-70631512 None:intergenic 50.0%
GGTTAGGGTTTCGATGAGGA+CGG - chr3.3:70629829-70629848 None:intergenic 50.0%
GTAGCTCTCATCAGTCCATC+GGG - chr3.3:70631024-70631043 None:intergenic 50.0%
TAGACCGGGCATTTCGACTT+CGG - chr3.3:70629721-70629740 None:intergenic 50.0%
TAGCTCTCATCAGTCCATCG+GGG - chr3.3:70631023-70631042 None:intergenic 50.0%
TCTGAACGTGCTCTTGACTG+GGG + chr3.3:70629984-70630003 MS.gene75668:CDS 50.0%
TTGTGATGCGCTTCACACCA+GGG - chr3.3:70631368-70631387 None:intergenic 50.0%
! TGCCCAGATTGAGTTGTGGA+AGG + chr3.3:70631530-70631549 MS.gene75668:CDS 50.0%
! TGGTGAGTTTAGCTCCAAGC+TGG - chr3.3:70631638-70631657 None:intergenic 50.0%
!! GGCAATGACTTGGTTGGTGA+AGG - chr3.3:70631514-70631533 None:intergenic 50.0%
ACCTTTCCATGCGAACACGG+CGG - chr3.3:70629937-70629956 None:intergenic 55.0%
ATGAGATCTGGTCCACCACC+AGG - chr3.3:70630011-70630030 None:intergenic 55.0%
GAGCGGTTAGGGTTTCGATG+AGG - chr3.3:70629833-70629852 None:intergenic 55.0%
GATTTCGAGACGGCCGAAGT+CGG - chr3.3:70629691-70629710 None:intergenic 55.0%
GCTCTTCATCTTGGCCAGCT+TGG + chr3.3:70631621-70631640 MS.gene75668:CDS 55.0%
GCTGCTGCATTGAAACAGGG+TGG + chr3.3:70631108-70631127 MS.gene75668:CDS 55.0%
GGCATCATTGTCTTGGCCGA+AGG + chr3.3:70631432-70631451 MS.gene75668:CDS 55.0%
GGCTTGTATGGACCCTCAAC+AGG - chr3.3:70631696-70631715 None:intergenic 55.0%
GGGATGGACCGAATTCGGTT+CGG - chr3.3:70629752-70629771 None:intergenic 55.0%
GGGTTGGGATGGACCGAATT+CGG - chr3.3:70629757-70629776 None:intergenic 55.0%
GGTCCATCCCAACCCTTCAA+AGG + chr3.3:70629762-70629781 MS.gene75668:CDS 55.0%
GGTTCGGCAGGACATTAGAC+CGG - chr3.3:70629736-70629755 None:intergenic 55.0%
GTTCGGCAGGACATTAGACC+GGG - chr3.3:70629735-70629754 None:intergenic 55.0%
TAGGGTTTCGATGAGGACGG+CGG - chr3.3:70629826-70629845 None:intergenic 55.0%
TTTCGATGAGGACGGCGGTT+TGG - chr3.3:70629821-70629840 None:intergenic 55.0%
! GACATGTCCCAAGCCGACTT+CGG + chr3.3:70629675-70629694 MS.gene75668:CDS 55.0%
! GCACCTTTGAAGGGTTGGGA+TGG - chr3.3:70629768-70629787 None:intergenic 55.0%
! GCTCTGAACGTGCTCTTGAC+TGG + chr3.3:70629982-70630001 MS.gene75668:CDS 55.0%
!! GAGTACCACTGGCTTGCATC+TGG - chr3.3:70630268-70630287 None:intergenic 55.0%
CACTAGCGGCCGCGAATACA+AGG + chr3.3:70629647-70629666 MS.gene75668:CDS 60.0%
CGGCCGCGAATACAAGGTCA+AGG + chr3.3:70629653-70629672 MS.gene75668:CDS 60.0%
CGGCGAGCTCGATTTCGAGA+CGG - chr3.3:70629701-70629720 None:intergenic 60.0%
CTCGCCGAAGTCGAAATGCC+CGG + chr3.3:70629714-70629733 MS.gene75668:CDS 60.0%
CTTGTATTCGCGGCCGCTAG+TGG - chr3.3:70629649-70629668 None:intergenic 60.0%
GTCCATCGGGGAGTGAGTGA+CGG - chr3.3:70631011-70631030 None:intergenic 60.0%
! TTCAGCGCCGAGAGCGGTTA+GGG - chr3.3:70629844-70629863 None:intergenic 60.0%
!! TGGACCGAATTCGGTTCGGC+AGG - chr3.3:70629748-70629767 None:intergenic 60.0%
CGTGCTCTTGACTGGGGTCC+TGG + chr3.3:70629990-70630009 MS.gene75668:CDS 65.0%
CTTGACTGGGGTCCTGGTGG+TGG + chr3.3:70629996-70630015 MS.gene75668:CDS 65.0%
GCCGCCGTGTTCGCATGGAA+AGG + chr3.3:70629933-70629952 MS.gene75668:CDS 65.0%
GCTCTTGACTGGGGTCCTGG+TGG + chr3.3:70629993-70630012 MS.gene75668:CDS 65.0%
GTATTCGCGGCCGCTAGTGG+TGG - chr3.3:70629646-70629665 None:intergenic 65.0%
GTCACGAGCGATGGCAGCAG+CGG - chr3.3:70629910-70629929 None:intergenic 65.0%
TGCCGTCACTCACTCCCCGA+TGG + chr3.3:70631006-70631025 MS.gene75668:CDS 65.0%
! ACGGACTTCAGCGCCGAGAG+CGG - chr3.3:70629850-70629869 None:intergenic 65.0%
! AGCAGCGGCGTGGTCTTGAG+TGG - chr3.3:70629895-70629914 None:intergenic 65.0%
! CTCTCGGCGCTGAAGTCCGT+TGG + chr3.3:70629850-70629869 MS.gene75668:CDS 65.0%
! CTTCAGCGCCGAGAGCGGTT+AGG - chr3.3:70629845-70629864 None:intergenic 65.0%
! GAGACGGCCGAAGTCGGCTT+GGG - chr3.3:70629685-70629704 None:intergenic 65.0%
ACAGCGCCGCCGTGTTCGCA+TGG + chr3.3:70629928-70629947 MS.gene75668:CDS 70.0%
CGAGACGGCCGAAGTCGGCT+TGG - chr3.3:70629686-70629705 None:intergenic 70.0%
GAGCGATGGCAGCAGCGGCG+TGG - chr3.3:70629905-70629924 None:intergenic 75.0%
GGCGGCGCTGTCACGAGCGA+TGG - chr3.3:70629919-70629938 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 70629624 70631734 70629624 ID=MS.gene75668
chr3.3 mRNA 70629624 70631734 70629624 ID=MS.gene75668.t1;Parent=MS.gene75668
chr3.3 exon 70629624 70630334 70629624 ID=MS.gene75668.t1.exon1;Parent=MS.gene75668.t1
chr3.3 CDS 70629624 70630334 70629624 ID=cds.MS.gene75668.t1;Parent=MS.gene75668.t1
chr3.3 exon 70630988 70631734 70630988 ID=MS.gene75668.t1.exon2;Parent=MS.gene75668.t1
chr3.3 CDS 70630988 70631734 70630988 ID=cds.MS.gene75668.t1;Parent=MS.gene75668.t1
Gene Sequence

>MS.gene75668

ATGGCGTTGCTGGTTGAAACCACCACTAGCGGCCGCGAATACAAGGTCAAGGACATGTCCCAAGCCGACTTCGGCCGTCTCGAAATCGAGCTCGCCGAAGTCGAAATGCCCGGTCTAATGTCCTGCCGAACCGAATTCGGTCCATCCCAACCCTTCAAAGGTGCTAGAATCACCGGTTCACTTCACATGACAATCCAAACCGCCGTCCTCATCGAAACCCTAACCGCTCTCGGCGCTGAAGTCCGTTGGTGTTCCTGCAACATCTTCTCCACTCAAGACCACGCCGCTGCTGCCATCGCTCGTGACAGCGCCGCCGTGTTCGCATGGAAAGGTGAAACTCTTCAAGAGTATTGGTGGTGCTCTGAACGTGCTCTTGACTGGGGTCCTGGTGGTGGACCAGATCTCATCGTTGATGATGGTGGTGATGTTACGCTTTTGATCCATGAAGGTGTTAAGGCTGAAGAGGTTTTTGAGAAGACTGGTCAGTTACCTGATCCTTCTTCCACTGATAATGCTGAGATGCAGATTGTTCTTACCATTATCAGAGATGGTTTGAAGACTGATCCTAAGAGGTACCAGAAGATGAAGACTAGAATTGTTGGTGTTTCTGAAGAAACTACCACTGGTGTTAAGAGGCTTTACCAGATGCAAGCCAGTGGTACTCTTTTGTTCCCTGCTATCAATGTCAATGACTCTGTTACCAAGAGCAAGGTATATTTTTTTCTTTCTTGTTTCTATTTTTGGTTATTAATCAGTTTTTTGTGTTTGATTTATTTATTTGATTCAGATCTGTTGCTATTATGTGTTTGTTTTTGTTGAATTTAGTTAATTTGAATTTCAGATCTATGTTTTGTTTTTTGAAATTGCTAAATTGAGATGGGTTTGGTAGATCCCATAAAATGGGAGAGTGTTATTTTATCATTAAAATTATTATGATATACTGTACTATGTGTGATGTAATTGTTTTTTTTAGTATGTTTTGAAAATCTGAAACTATTTAAAAATTCACAATGATATTGTTCCGTGTTGAACCAACAGTGTTGGTTGGAACTTGGAATTGTCAAAAGAAAAGGTTGGTTGGATCTAATGTTTTAATTGATCTTTGTCATCAATTTAATCATCTTCAAATGATTTTCATTGTTGATTTCAAATCAAACGACCAAGATCTATAATGACATCACACATTTGCTAATTGGAATCCATTATCTATATTTATTTTAAAAGTTTAATTGTCTAGGGTAGATCAGTTATTTATTAGTTTGTTGGAGAACAATAAGTTGGTTACTTTTTTGTTGTAAATTCAAATCTGTTTACCTTTTGTGTGATGTTGTCTAACAAATAATGTTGTTTTGTGATATTAACAGTTTGACAACTTGTACGGTTGCCGTCACTCACTCCCCGATGGACTGATGAGAGCTACTGATGTGATGATTGCCGGAAAGGTTGCTGTTGTATGTGGTTATGGAGATGTTGGCAAGGGTTGTGCTGCTGCATTGAAACAGGGTGGAGCTCGTGTGATCGTGACTGAGATCGATCCAATTTGTGCACTTCAAGCTCTTATGGAAGGTCTTCAAGTCTTGACTTTGGAGGATGTTATCTCCGAGGCTGACATCTTTGTTACCACAACCGGTAACAAAGACATTATCATGGTTAGTGACATGAAGAAAATGAAGAACAATGCCATTGTCTGCAATATTGGTCACTTCGACAATGAAATTGACATGCATGGACTTGAGACTTACCCTGGTGTGAAGCGCATCACAATTAAGCCACAAACTGACAGATGGGTTTTCCCTGAAACCAAAACTGGCATCATTGTCTTGGCCGAAGGTCGTTTGATGAACTTGGGATGTGCTACTGGACACCCCAGTTTCGTCATGTCATGCTCCTTCACCAACCAAGTCATTGCCCAGATTGAGTTGTGGAAGGAAAAGACTTCCGGCAAGTATGAAAAGAAGGTATATGTTTTGCCTAAGCACCTTGATGAGAAGGTTGCTGCTCTTCATCTTGGCCAGCTTGGAGCTAAACTCACCAAGCTTTCCAAAGATCAAGCAGATTACATCAGTGTGCCTGTTGAGGGTCCATACAAGCCTGCTCACTACAGGTACTGA

Protein sequence

>MS.gene75668.t1

MALLVETTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMSCRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCSERALDWGPGGGPDLIVDDGGDVTLLIHEGVKAEEVFEKTGQLPDPSSTDNAEMQIVLTIIRDGLKTDPKRYQKMKTRIVGVSEETTTGVKRLYQMQASGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAALKQGGARVIVTEIDPICALQALMEGLQVLTLEDVISEADIFVTTTGNKDIIMVSDMKKMKNNAIVCNIGHFDNEIDMHGLETYPGVKRITIKPQTDRWVFPETKTGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQIELWKEKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY