Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75668.t1 | P50246.1 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 2.10E-281 | 977.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75668.t1 | P50246 | 99.8 | 485 | 1 | 0 | 1 | 485 | 1 | 485 | 5.0e-284 | 977.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75668.t1 | Q84RD8 | 99.2 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 6.3e-280 | 972.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06645 | MS.gene75668 | PPI |
MS.gene75668 | MS.gene050290 | PPI |
MS.gene75668 | MS.gene050252 | PPI |
MS.gene007189 | MS.gene75668 | PPI |
MS.gene75668 | MS.gene81765 | PPI |
MS.gene75668 | MS.gene06859 | PPI |
MS.gene75668 | MS.gene77533 | PPI |
MS.gene75668 | MS.gene045356 | PPI |
MS.gene057206 | MS.gene75668 | PPI |
MS.gene75668 | MS.gene034846 | PPI |
MS.gene24706 | MS.gene75668 | PPI |
MS.gene75668 | MS.gene79895 | PPI |
MS.gene013534 | MS.gene75668 | PPI |
MS.gene75668 | MS.gene056896 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75668.t1 | MTR_3g084340 | 99.175 | 485 | 4 | 0 | 1 | 485 | 1 | 485 | 0.0 | 1001 |
MS.gene75668.t1 | MTR_8g083090 | 91.753 | 485 | 40 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75668.t1 | AT4G13940 | 91.134 | 485 | 43 | 0 | 1 | 485 | 1 | 485 | 0.0 | 919 |
MS.gene75668.t1 | AT3G23810 | 89.897 | 485 | 49 | 0 | 1 | 485 | 1 | 485 | 0.0 | 904 |
MS.gene75668.t1 | AT4G13940 | 82.268 | 485 | 41 | 1 | 1 | 485 | 1 | 440 | 0.0 | 814 |
MS.gene75668.t1 | AT4G13940 | 89.532 | 363 | 38 | 0 | 123 | 485 | 2 | 364 | 0.0 | 693 |
MS.gene75668.t1 | AT4G13940 | 91.558 | 308 | 26 | 0 | 1 | 308 | 1 | 308 | 0.0 | 573 |
Find 150 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTGCACTTCAAGCTCTTA+TGG | 0.246520 | 3.3:+70631164 | MS.gene75668:CDS |
GATGTAATCTGCTTGATCTT+TGG | 0.258494 | 3.3:-70631664 | None:intergenic |
CAAGACAATGATGCCAGTTT+TGG | 0.273063 | 3.3:-70631424 | None:intergenic |
CATGATAATGTCTTTGTTAC+CGG | 0.281658 | 3.3:-70631250 | None:intergenic |
TTTCCTTCCACAACTCAATC+TGG | 0.282987 | 3.3:-70631533 | None:intergenic |
GCTCTGAACGTGCTCTTGAC+TGG | 0.284203 | 3.3:+70629982 | MS.gene75668:CDS |
TTCATCTTCTGGTACCTCTT+AGG | 0.306451 | 3.3:-70630188 | None:intergenic |
CTCTGAACGTGCTCTTGACT+GGG | 0.308933 | 3.3:+70629983 | MS.gene75668:CDS |
CAATTCTAGTCTTCATCTTC+TGG | 0.309837 | 3.3:-70630199 | None:intergenic |
ATCCATCGCAATGGCGTTGC+TGG | 0.321329 | 3.3:+70629614 | None:intergenic |
CGAAGGTCGTTTGATGAACT+TGG | 0.331691 | 3.3:+70631449 | MS.gene75668:CDS |
CTTCAGCCTTAACACCTTCA+TGG | 0.332449 | 3.3:-70630064 | None:intergenic |
AATGCCATTGTCTGCAATAT+TGG | 0.338131 | 3.3:+70631300 | MS.gene75668:CDS |
ATGTCCTGCCGAACCGAATT+CGG | 0.339299 | 3.3:+70629741 | MS.gene75668:CDS |
AGAGCTTGAAGTGCACAAAT+TGG | 0.344753 | 3.3:-70631159 | None:intergenic |
CTTCAAACCATCTCTGATAA+TGG | 0.351075 | 3.3:-70630159 | None:intergenic |
CTTCAGCGCCGAGAGCGGTT+AGG | 0.352649 | 3.3:-70629842 | None:intergenic |
GGAGCATGACATGACGAAAC+TGG | 0.354812 | 3.3:-70631490 | None:intergenic |
ATGAACTTGGGATGTGCTAC+TGG | 0.363624 | 3.3:+70631462 | MS.gene75668:CDS |
CTGTAGTGAGCAGGCTTGTA+TGG | 0.374125 | 3.3:-70631705 | None:intergenic |
GTTGCTGTTGTATGTGGTTA+TGG | 0.380098 | 3.3:+70631066 | MS.gene75668:CDS |
CGTGCTCTTGACTGGGGTCC+TGG | 0.385588 | 3.3:+70629990 | MS.gene75668:CDS |
ACATACAACAGCAACCTTTC+CGG | 0.388605 | 3.3:-70631058 | None:intergenic |
GGGTTGGGATGGACCGAATT+CGG | 0.390190 | 3.3:-70629754 | None:intergenic |
GCTCTTCATCTTGGCCAGCT+TGG | 0.394343 | 3.3:+70631621 | MS.gene75668:CDS |
GACATCTTTGTTACCACAAC+CGG | 0.395286 | 3.3:+70631231 | MS.gene75668:CDS |
TTGTGCTGCTGCATTGAAAC+AGG | 0.399578 | 3.3:+70631104 | MS.gene75668:CDS |
TGCTTGATCTTTGGAAAGCT+TGG | 0.399876 | 3.3:-70631655 | None:intergenic |
CTTGACTGGGGTCCTGGTGG+TGG | 0.403597 | 3.3:+70629996 | MS.gene75668:CDS |
TCTAGCACCTTTGAAGGGTT+GGG | 0.410769 | 3.3:-70629769 | None:intergenic |
AAGGTTGCTGCTCTTCATCT+TGG | 0.415226 | 3.3:+70631612 | MS.gene75668:CDS |
TTTCGATGAGGACGGCGGTT+TGG | 0.421389 | 3.3:-70629818 | None:intergenic |
TTCTAGCACCTTTGAAGGGT+TGG | 0.427916 | 3.3:-70629770 | None:intergenic |
TTCAGCGCCGAGAGCGGTTA+GGG | 0.433864 | 3.3:-70629841 | None:intergenic |
TTTGATCCATGAAGGTGTTA+AGG | 0.439226 | 3.3:+70630058 | MS.gene75668:CDS |
GGTGATTCTAGCACCTTTGA+AGG | 0.443699 | 3.3:-70629775 | None:intergenic |
GAGACGGCCGAAGTCGGCTT+GGG | 0.446562 | 3.3:-70629682 | None:intergenic |
TTGTGGAAGGAAAAGACTTC+CGG | 0.448452 | 3.3:+70631543 | MS.gene75668:CDS |
GCTACTGATGTGATGATTGC+CGG | 0.449909 | 3.3:+70631039 | MS.gene75668:CDS |
GAGTACCACTGGCTTGCATC+TGG | 0.455608 | 3.3:-70630265 | None:intergenic |
AAGATGAAGACTAGAATTGT+TGG | 0.457319 | 3.3:+70630203 | MS.gene75668:CDS |
CACTAGCGGCCGCGAATACA+AGG | 0.463037 | 3.3:+70629647 | MS.gene75668:CDS |
GTAGCTCTCATCAGTCCATC+GGG | 0.463967 | 3.3:-70631021 | None:intergenic |
GGCTTGTATGGACCCTCAAC+AGG | 0.474052 | 3.3:-70631693 | None:intergenic |
TACATCAGTGTGCCTGTTGA+GGG | 0.474583 | 3.3:+70631681 | MS.gene75668:CDS |
TTCCTTCCACAACTCAATCT+GGG | 0.478489 | 3.3:-70631532 | None:intergenic |
AGGTCTTCAAGTCTTGACTT+TGG | 0.482657 | 3.3:+70631188 | MS.gene75668:CDS |
CTCTCGGCGCTGAAGTCCGT+TGG | 0.484320 | 3.3:+70629850 | MS.gene75668:CDS |
CAAGTTCATCAAACGACCTT+CGG | 0.485613 | 3.3:-70631448 | None:intergenic |
AATGTCTTTGTTACCGGTTG+TGG | 0.486256 | 3.3:-70631244 | None:intergenic |
AAAACCCATCTGTCAGTTTG+TGG | 0.488904 | 3.3:-70631393 | None:intergenic |
CGAGACGGCCGAAGTCGGCT+TGG | 0.488999 | 3.3:-70629683 | None:intergenic |
GTGAAACTCTTCAAGAGTAT+TGG | 0.491446 | 3.3:+70629955 | MS.gene75668:CDS |
AAACTACCACTGGTGTTAAG+AGG | 0.493018 | 3.3:+70630237 | MS.gene75668:CDS |
TCTTCAAGTCTTGACTTTGG+AGG | 0.494059 | 3.3:+70631191 | MS.gene75668:CDS |
TTGAGTGGAGAAGATGTTGC+AGG | 0.498069 | 3.3:-70629877 | None:intergenic |
GTTCTTACCATTATCAGAGA+TGG | 0.499328 | 3.3:+70630152 | MS.gene75668:CDS |
GATTGTCATGTGAAGTGAAC+CGG | 0.499367 | 3.3:-70629796 | None:intergenic |
GCCTAAGCACCTTGATGAGA+AGG | 0.499877 | 3.3:+70631593 | MS.gene75668:CDS |
CAAAACTGGCATCATTGTCT+TGG | 0.506187 | 3.3:+70631425 | MS.gene75668:CDS |
GAGCATGACATGACGAAACT+GGG | 0.509921 | 3.3:-70631489 | None:intergenic |
ATTGTGATGCGCTTCACACC+AGG | 0.516815 | 3.3:-70631366 | None:intergenic |
GGGATGGACCGAATTCGGTT+CGG | 0.518576 | 3.3:-70629749 | None:intergenic |
ATCGAAACCCTAACCGCTCT+CGG | 0.519237 | 3.3:+70629834 | MS.gene75668:CDS |
TGTCCTTGACCTTGTATTCG+CGG | 0.519525 | 3.3:-70629656 | None:intergenic |
ACAGCGCCGCCGTGTTCGCA+TGG | 0.523074 | 3.3:+70629928 | MS.gene75668:CDS |
TTCCGGCAAGTATGAAAAGA+AGG | 0.523649 | 3.3:+70631560 | MS.gene75668:CDS |
ACTCAATCTGGGCAATGACT+TGG | 0.524880 | 3.3:-70631521 | None:intergenic |
CCATCATCAACGATGAGATC+TGG | 0.525149 | 3.3:-70630020 | None:intergenic |
GTCACGAGCGATGGCAGCAG+CGG | 0.527010 | 3.3:-70629907 | None:intergenic |
GACATGTCCCAAGCCGACTT+CGG | 0.530150 | 3.3:+70629675 | MS.gene75668:CDS |
TAACAGTTTGACAACTTGTA+CGG | 0.530587 | 3.3:+70630982 | MS.gene75668:intron |
GAGTCATTGACATTGATAGC+AGG | 0.532386 | 3.3:-70630296 | None:intergenic |
CTTGTATTCGCGGCCGCTAG+TGG | 0.534197 | 3.3:-70629646 | None:intergenic |
CATACAAGCCTGCTCACTAC+AGG | 0.535609 | 3.3:+70631706 | MS.gene75668:CDS |
GGCATCATTGTCTTGGCCGA+AGG | 0.539009 | 3.3:+70631432 | MS.gene75668:CDS |
GTATGTGGTTATGGAGATGT+TGG | 0.539146 | 3.3:+70631075 | MS.gene75668:CDS |
TAGACCGGGCATTTCGACTT+CGG | 0.540521 | 3.3:-70629718 | None:intergenic |
TTATCAGTGGAAGAAGGATC+AGG | 0.540967 | 3.3:-70630113 | None:intergenic |
TGCCGTCACTCACTCCCCGA+TGG | 0.543995 | 3.3:+70631006 | MS.gene75668:CDS |
TTCAAAGGTGCTAGAATCAC+CGG | 0.545328 | 3.3:+70629777 | MS.gene75668:CDS |
GACAATGAAATTGACATGCA+TGG | 0.548002 | 3.3:+70631330 | MS.gene75668:CDS |
GAGCAGCAACCTTCTCATCA+AGG | 0.548483 | 3.3:-70631602 | None:intergenic |
AGTAGCTCTCATCAGTCCAT+CGG | 0.549778 | 3.3:-70631022 | None:intergenic |
TGGACCGAATTCGGTTCGGC+AGG | 0.550451 | 3.3:-70629745 | None:intergenic |
TGGTGAGTTTAGCTCCAAGC+TGG | 0.552972 | 3.3:-70631635 | None:intergenic |
AAACTCTTCAAGAGTATTGG+TGG | 0.555528 | 3.3:+70629958 | MS.gene75668:CDS |
GGCAATGACTTGGTTGGTGA+AGG | 0.555648 | 3.3:-70631511 | None:intergenic |
TCTCAGTACCTGTAGTGAGC+AGG | 0.556638 | 3.3:-70631714 | None:intergenic |
TTACATCAGTGTGCCTGTTG+AGG | 0.557257 | 3.3:+70631680 | MS.gene75668:CDS |
GATTTCGAGACGGCCGAAGT+CGG | 0.561398 | 3.3:-70629688 | None:intergenic |
GAAGGTCGTTTGATGAACTT+GGG | 0.567387 | 3.3:+70631450 | MS.gene75668:CDS |
TGAAGGTGTTAAGGCTGAAG+AGG | 0.568244 | 3.3:+70630067 | MS.gene75668:CDS |
CCAGATCTCATCGTTGATGA+TGG | 0.568308 | 3.3:+70630020 | MS.gene75668:CDS |
TGATGTGATGATTGCCGGAA+AGG | 0.572516 | 3.3:+70631044 | MS.gene75668:CDS |
GTCCATCGGGGAGTGAGTGA+CGG | 0.572655 | 3.3:-70631008 | None:intergenic |
GTTCGGCAGGACATTAGACC+GGG | 0.573271 | 3.3:-70629732 | None:intergenic |
GGAAAGGTTGCTGTTGTATG+TGG | 0.573631 | 3.3:+70631060 | MS.gene75668:CDS |
GAGCGATGGCAGCAGCGGCG+TGG | 0.575591 | 3.3:-70629902 | None:intergenic |
GGTTCGGCAGGACATTAGAC+CGG | 0.577241 | 3.3:-70629733 | None:intergenic |
TAAGCCACAAACTGACAGAT+GGG | 0.577992 | 3.3:+70631389 | MS.gene75668:CDS |
GCACCTTTGAAGGGTTGGGA+TGG | 0.581733 | 3.3:-70629765 | None:intergenic |
AGGGAACAAAAGAGTACCAC+TGG | 0.581899 | 3.3:-70630276 | None:intergenic |
GTTTGAAGACTGATCCTAAG+AGG | 0.582975 | 3.3:+70630174 | MS.gene75668:CDS |
GCACTTCAAGCTCTTATGGA+AGG | 0.583496 | 3.3:+70631168 | MS.gene75668:CDS |
TGCCCAGATTGAGTTGTGGA+AGG | 0.584564 | 3.3:+70631530 | MS.gene75668:CDS |
AGCAGCGGCGTGGTCTTGAG+TGG | 0.585227 | 3.3:-70629892 | None:intergenic |
CGGTAACAAAGACATTATCA+TGG | 0.586819 | 3.3:+70631251 | MS.gene75668:CDS |
TCAGCATTATCAGTGGAAGA+AGG | 0.586864 | 3.3:-70630119 | None:intergenic |
ACCTTCTCATCAAGGTGCTT+AGG | 0.587574 | 3.3:-70631594 | None:intergenic |
CTCGCCGAAGTCGAAATGCC+CGG | 0.588811 | 3.3:+70629714 | MS.gene75668:CDS |
GTATTCGCGGCCGCTAGTGG+TGG | 0.589620 | 3.3:-70629643 | None:intergenic |
GGTCCATCCCAACCCTTCAA+AGG | 0.590417 | 3.3:+70629762 | MS.gene75668:CDS |
GTGATTCTAGCACCTTTGAA+GGG | 0.592015 | 3.3:-70629774 | None:intergenic |
ATGAGATCTGGTCCACCACC+AGG | 0.593938 | 3.3:-70630008 | None:intergenic |
TTAAGCCACAAACTGACAGA+TGG | 0.599504 | 3.3:+70631388 | MS.gene75668:CDS |
TGGTTATGGAGATGTTGGCA+AGG | 0.602291 | 3.3:+70631080 | MS.gene75668:CDS |
TTCACCTTTCCATGCGAACA+CGG | 0.604306 | 3.3:-70629937 | None:intergenic |
GGCGGCGCTGTCACGAGCGA+TGG | 0.605675 | 3.3:-70629916 | None:intergenic |
GCCGCCGTGTTCGCATGGAA+AGG | 0.609488 | 3.3:+70629933 | MS.gene75668:CDS |
AGTCATTGACATTGATAGCA+GGG | 0.617293 | 3.3:-70630295 | None:intergenic |
GGTTAGGGTTTCGATGAGGA+CGG | 0.623279 | 3.3:-70629826 | None:intergenic |
CGGCCGCGAATACAAGGTCA+AGG | 0.626311 | 3.3:+70629653 | MS.gene75668:CDS |
TCATTGCCCAGATTGAGTTG+TGG | 0.630377 | 3.3:+70631526 | MS.gene75668:CDS |
CTGCATCTCAGCATTATCAG+TGG | 0.631115 | 3.3:-70630126 | None:intergenic |
GGTTATGGAGATGTTGGCAA+GGG | 0.635999 | 3.3:+70631081 | MS.gene75668:CDS |
TGACTCTGTTACCAAGAGCA+AGG | 0.637085 | 3.3:+70630313 | MS.gene75668:CDS |
GGTAACAAAGATGTCAGCCT+CGG | 0.637559 | 3.3:-70631223 | None:intergenic |
CGGCGAGCTCGATTTCGAGA+CGG | 0.639311 | 3.3:-70629698 | None:intergenic |
CTGGTTGAAACCACCACTAG+CGG | 0.640235 | 3.3:+70629633 | MS.gene75668:CDS |
GCTCTTGACTGGGGTCCTGG+TGG | 0.646422 | 3.3:+70629993 | MS.gene75668:CDS |
AATCTGGGCAATGACTTGGT+TGG | 0.646442 | 3.3:-70631517 | None:intergenic |
AGATGTTGCAGGAACACCAA+CGG | 0.647065 | 3.3:-70629866 | None:intergenic |
TTGTGATGCGCTTCACACCA+GGG | 0.649814 | 3.3:-70631365 | None:intergenic |
GTGACCAATATTGCAGACAA+TGG | 0.654212 | 3.3:-70631304 | None:intergenic |
CATGGACTTGAGACTTACCC+TGG | 0.655927 | 3.3:+70631348 | MS.gene75668:CDS |
GATCTCATCGTTGATGATGG+TGG | 0.656347 | 3.3:+70630023 | MS.gene75668:CDS |
GTAAAGCCTCTTAACACCAG+TGG | 0.656682 | 3.3:-70630243 | None:intergenic |
TGTGCTGCTGCATTGAAACA+GGG | 0.663521 | 3.3:+70631105 | MS.gene75668:CDS |
TCTGAACGTGCTCTTGACTG+GGG | 0.665456 | 3.3:+70629984 | MS.gene75668:CDS |
ACGGACTTCAGCGCCGAGAG+CGG | 0.666573 | 3.3:-70629847 | None:intergenic |
CTTTACCAGATGCAAGCCAG+TGG | 0.671517 | 3.3:+70630260 | MS.gene75668:CDS |
TTTGGAGGATGTTATCTCCG+AGG | 0.672766 | 3.3:+70631206 | MS.gene75668:CDS |
TAGGGTTTCGATGAGGACGG+CGG | 0.676084 | 3.3:-70629823 | None:intergenic |
ACCTTTCCATGCGAACACGG+CGG | 0.684766 | 3.3:-70629934 | None:intergenic |
GTTTCTGAAGAAACTACCAC+TGG | 0.697565 | 3.3:+70630227 | MS.gene75668:CDS |
AGCATGACATGACGAAACTG+GGG | 0.716423 | 3.3:-70631488 | None:intergenic |
GAGCGGTTAGGGTTTCGATG+AGG | 0.727757 | 3.3:-70629830 | None:intergenic |
GCTGCTGCATTGAAACAGGG+TGG | 0.758030 | 3.3:+70631108 | MS.gene75668:CDS |
TAGCTCTCATCAGTCCATCG+GGG | 0.769557 | 3.3:-70631020 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAGTTTAATTGTCTA+GGG | + | chr3.3:70630840-70630859 | MS.gene75668:intron | 15.0% |
!!! | TTTTAAAAGTTTAATTGTCT+AGG | + | chr3.3:70630839-70630858 | MS.gene75668:intron | 15.0% |
!!! | TCAGTTATTTATTAGTTTGT+TGG | + | chr3.3:70630867-70630886 | MS.gene75668:intron | 20.0% |
!!! | TTCTTTCTTGTTTCTATTTT+TGG | + | chr3.3:70630345-70630364 | MS.gene75668:intron | 20.0% |
! | AAAAAAATATACCTTGCTCT+TGG | - | chr3.3:70630327-70630346 | None:intergenic | 25.0% |
! | TGAAATTGCTAAATTGAGAT+GGG | + | chr3.3:70630482-70630501 | MS.gene75668:intron | 25.0% |
! | TTGAAATTGCTAAATTGAGA+TGG | + | chr3.3:70630481-70630500 | MS.gene75668:intron | 25.0% |
AAGATGAAGACTAGAATTGT+TGG | + | chr3.3:70630203-70630222 | MS.gene75668:CDS | 30.0% | |
CTTGGAATTGTCAAAAGAAA+AGG | + | chr3.3:70630674-70630693 | MS.gene75668:intron | 30.0% | |
GAATTGTCAAAAGAAAAGGT+TGG | + | chr3.3:70630678-70630697 | MS.gene75668:intron | 30.0% | |
TAACAGTTTGACAACTTGTA+CGG | + | chr3.3:70630982-70631001 | MS.gene75668:intron | 30.0% | |
TGTGATGTCATTATAGATCT+TGG | - | chr3.3:70630786-70630805 | None:intergenic | 30.0% | |
TTTGGTAGATCCCATAAAAT+GGG | + | chr3.3:70630505-70630524 | MS.gene75668:intron | 30.0% | |
TTTGTTGGAGAACAATAAGT+TGG | + | chr3.3:70630882-70630901 | MS.gene75668:intron | 30.0% | |
! | AATAACACTCTCCCATTTTA+TGG | - | chr3.3:70630519-70630538 | None:intergenic | 30.0% |
! | ATAACACTCTCCCATTTTAT+GGG | - | chr3.3:70630518-70630537 | None:intergenic | 30.0% |
! | CATGATAATGTCTTTGTTAC+CGG | - | chr3.3:70631253-70631272 | None:intergenic | 30.0% |
AATGCCATTGTCTGCAATAT+TGG | + | chr3.3:70631300-70631319 | MS.gene75668:CDS | 35.0% | |
CGGTAACAAAGACATTATCA+TGG | + | chr3.3:70631251-70631270 | MS.gene75668:CDS | 35.0% | |
CTTCAAACCATCTCTGATAA+TGG | - | chr3.3:70630162-70630181 | None:intergenic | 35.0% | |
GACAATGAAATTGACATGCA+TGG | + | chr3.3:70631330-70631349 | MS.gene75668:CDS | 35.0% | |
GATGTAATCTGCTTGATCTT+TGG | - | chr3.3:70631667-70631686 | None:intergenic | 35.0% | |
GTTAGACAACATCACACAAA+AGG | - | chr3.3:70630940-70630959 | None:intergenic | 35.0% | |
GTTCTTACCATTATCAGAGA+TGG | + | chr3.3:70630152-70630171 | MS.gene75668:CDS | 35.0% | |
GTTTGGTAGATCCCATAAAA+TGG | + | chr3.3:70630504-70630523 | MS.gene75668:intron | 35.0% | |
! | AGTCATTGACATTGATAGCA+GGG | - | chr3.3:70630298-70630317 | None:intergenic | 35.0% |
! | CAATTCTAGTCTTCATCTTC+TGG | - | chr3.3:70630202-70630221 | None:intergenic | 35.0% |
! | GACATCACACATTTGCTAAT+TGG | + | chr3.3:70630797-70630816 | MS.gene75668:intron | 35.0% |
! | GTGAAACTCTTCAAGAGTAT+TGG | + | chr3.3:70629955-70629974 | MS.gene75668:CDS | 35.0% |
! | TACCTTCTTTTCATACTTGC+CGG | - | chr3.3:70631565-70631584 | None:intergenic | 35.0% |
! | TGTCAAAAGAAAAGGTTGGT+TGG | + | chr3.3:70630682-70630701 | MS.gene75668:intron | 35.0% |
! | TTGCTAAATTGAGATGGGTT+TGG | + | chr3.3:70630487-70630506 | MS.gene75668:intron | 35.0% |
!! | AAACTCTTCAAGAGTATTGG+TGG | + | chr3.3:70629958-70629977 | MS.gene75668:CDS | 35.0% |
!! | TTTGATCCATGAAGGTGTTA+AGG | + | chr3.3:70630058-70630077 | MS.gene75668:CDS | 35.0% |
AAAACCCATCTGTCAGTTTG+TGG | - | chr3.3:70631396-70631415 | None:intergenic | 40.0% | |
ACATACAACAGCAACCTTTC+CGG | - | chr3.3:70631061-70631080 | None:intergenic | 40.0% | |
AGAGCTTGAAGTGCACAAAT+TGG | - | chr3.3:70631162-70631181 | None:intergenic | 40.0% | |
AGGTCTTCAAGTCTTGACTT+TGG | + | chr3.3:70631188-70631207 | MS.gene75668:CDS | 40.0% | |
CAAAACTGGCATCATTGTCT+TGG | + | chr3.3:70631425-70631444 | MS.gene75668:CDS | 40.0% | |
CAAGTTCATCAAACGACCTT+CGG | - | chr3.3:70631451-70631470 | None:intergenic | 40.0% | |
GAAGGTCGTTTGATGAACTT+GGG | + | chr3.3:70631450-70631469 | MS.gene75668:CDS | 40.0% | |
GACATCTTTGTTACCACAAC+CGG | + | chr3.3:70631231-70631250 | MS.gene75668:CDS | 40.0% | |
GATTGTCATGTGAAGTGAAC+CGG | - | chr3.3:70629799-70629818 | None:intergenic | 40.0% | |
GTATGTGGTTATGGAGATGT+TGG | + | chr3.3:70631075-70631094 | MS.gene75668:CDS | 40.0% | |
GTGACCAATATTGCAGACAA+TGG | - | chr3.3:70631307-70631326 | None:intergenic | 40.0% | |
GTGATTCTAGCACCTTTGAA+GGG | - | chr3.3:70629777-70629796 | None:intergenic | 40.0% | |
GTTTGAAGACTGATCCTAAG+AGG | + | chr3.3:70630174-70630193 | MS.gene75668:CDS | 40.0% | |
TAAGCCACAAACTGACAGAT+GGG | + | chr3.3:70631389-70631408 | MS.gene75668:CDS | 40.0% | |
TCAGCATTATCAGTGGAAGA+AGG | - | chr3.3:70630122-70630141 | None:intergenic | 40.0% | |
TCTTCAAGTCTTGACTTTGG+AGG | + | chr3.3:70631191-70631210 | MS.gene75668:CDS | 40.0% | |
TTAAGCCACAAACTGACAGA+TGG | + | chr3.3:70631388-70631407 | MS.gene75668:CDS | 40.0% | |
TTATCAGTGGAAGAAGGATC+AGG | - | chr3.3:70630116-70630135 | None:intergenic | 40.0% | |
TTCATCTTCTGGTACCTCTT+AGG | - | chr3.3:70630191-70630210 | None:intergenic | 40.0% | |
TTCCGGCAAGTATGAAAAGA+AGG | + | chr3.3:70631560-70631579 | MS.gene75668:CDS | 40.0% | |
TTCCTTCCACAACTCAATCT+GGG | - | chr3.3:70631535-70631554 | None:intergenic | 40.0% | |
TTGTGCACTTCAAGCTCTTA+TGG | + | chr3.3:70631164-70631183 | MS.gene75668:CDS | 40.0% | |
TTGTGGAAGGAAAAGACTTC+CGG | + | chr3.3:70631543-70631562 | MS.gene75668:CDS | 40.0% | |
TTTCCTTCCACAACTCAATC+TGG | - | chr3.3:70631536-70631555 | None:intergenic | 40.0% | |
! | AAACTACCACTGGTGTTAAG+AGG | + | chr3.3:70630237-70630256 | MS.gene75668:CDS | 40.0% |
! | AATGTCTTTGTTACCGGTTG+TGG | - | chr3.3:70631247-70631266 | None:intergenic | 40.0% |
! | CAAGACAATGATGCCAGTTT+TGG | - | chr3.3:70631427-70631446 | None:intergenic | 40.0% |
! | GAGTCATTGACATTGATAGC+AGG | - | chr3.3:70630299-70630318 | None:intergenic | 40.0% |
! | GTTACGCTTTTGATCCATGA+AGG | + | chr3.3:70630050-70630069 | MS.gene75668:CDS | 40.0% |
! | GTTGCTGTTGTATGTGGTTA+TGG | + | chr3.3:70631066-70631085 | MS.gene75668:CDS | 40.0% |
! | GTTTCTGAAGAAACTACCAC+TGG | + | chr3.3:70630227-70630246 | MS.gene75668:CDS | 40.0% |
! | GTTTTCCCTGAAACCAAAAC+TGG | + | chr3.3:70631411-70631430 | MS.gene75668:CDS | 40.0% |
! | TGCTTGATCTTTGGAAAGCT+TGG | - | chr3.3:70631658-70631677 | None:intergenic | 40.0% |
!! | GAAGAGGTTTTTGAGAAGAC+TGG | + | chr3.3:70630083-70630102 | MS.gene75668:CDS | 40.0% |
!! | TTCAAAGGTGCTAGAATCAC+CGG | + | chr3.3:70629777-70629796 | MS.gene75668:CDS | 40.0% |
!!! | ATGATGCCAGTTTTGGTTTC+AGG | - | chr3.3:70631420-70631439 | None:intergenic | 40.0% |
!!! | TGATGCCAGTTTTGGTTTCA+GGG | - | chr3.3:70631419-70631438 | None:intergenic | 40.0% |
AAGGTTGCTGCTCTTCATCT+TGG | + | chr3.3:70631612-70631631 | MS.gene75668:CDS | 45.0% | |
ACTCAATCTGGGCAATGACT+TGG | - | chr3.3:70631524-70631543 | None:intergenic | 45.0% | |
AGATGTTGCAGGAACACCAA+CGG | - | chr3.3:70629869-70629888 | None:intergenic | 45.0% | |
AGCATGACATGACGAAACTG+GGG | - | chr3.3:70631491-70631510 | None:intergenic | 45.0% | |
AGTAGCTCTCATCAGTCCAT+CGG | - | chr3.3:70631025-70631044 | None:intergenic | 45.0% | |
ATGAACTTGGGATGTGCTAC+TGG | + | chr3.3:70631462-70631481 | MS.gene75668:CDS | 45.0% | |
CAAGTTCCAACCAACACTGT+TGG | - | chr3.3:70630658-70630677 | None:intergenic | 45.0% | |
CCATCATCAACGATGAGATC+TGG | - | chr3.3:70630023-70630042 | None:intergenic | 45.0% | |
CGAAGGTCGTTTGATGAACT+TGG | + | chr3.3:70631449-70631468 | MS.gene75668:CDS | 45.0% | |
CTGCATCTCAGCATTATCAG+TGG | - | chr3.3:70630129-70630148 | None:intergenic | 45.0% | |
CTTCAGCCTTAACACCTTCA+TGG | - | chr3.3:70630067-70630086 | None:intergenic | 45.0% | |
GAGCATGACATGACGAAACT+GGG | - | chr3.3:70631492-70631511 | None:intergenic | 45.0% | |
GCACTTCAAGCTCTTATGGA+AGG | + | chr3.3:70631168-70631187 | MS.gene75668:CDS | 45.0% | |
GCTACTGATGTGATGATTGC+CGG | + | chr3.3:70631039-70631058 | MS.gene75668:CDS | 45.0% | |
GGTAACAAAGATGTCAGCCT+CGG | - | chr3.3:70631226-70631245 | None:intergenic | 45.0% | |
GGTGATTCTAGCACCTTTGA+AGG | - | chr3.3:70629778-70629797 | None:intergenic | 45.0% | |
GGTTATGGAGATGTTGGCAA+GGG | + | chr3.3:70631081-70631100 | MS.gene75668:CDS | 45.0% | |
GTAAAGCCTCTTAACACCAG+TGG | - | chr3.3:70630246-70630265 | None:intergenic | 45.0% | |
TACATCAGTGTGCCTGTTGA+GGG | + | chr3.3:70631681-70631700 | MS.gene75668:CDS | 45.0% | |
TGACTCTGTTACCAAGAGCA+AGG | + | chr3.3:70630313-70630332 | MS.gene75668:CDS | 45.0% | |
TGATGTGATGATTGCCGGAA+AGG | + | chr3.3:70631044-70631063 | MS.gene75668:CDS | 45.0% | |
TGGTTATGGAGATGTTGGCA+AGG | + | chr3.3:70631080-70631099 | MS.gene75668:CDS | 45.0% | |
TGTCCTTGACCTTGTATTCG+CGG | - | chr3.3:70629659-70629678 | None:intergenic | 45.0% | |
TTACATCAGTGTGCCTGTTG+AGG | + | chr3.3:70631680-70631699 | MS.gene75668:CDS | 45.0% | |
TTCACCTTTCCATGCGAACA+CGG | - | chr3.3:70629940-70629959 | None:intergenic | 45.0% | |
TTGAGTGGAGAAGATGTTGC+AGG | - | chr3.3:70629880-70629899 | None:intergenic | 45.0% | |
TTTGGAGGATGTTATCTCCG+AGG | + | chr3.3:70631206-70631225 | MS.gene75668:CDS | 45.0% | |
! | ACCTTCTCATCAAGGTGCTT+AGG | - | chr3.3:70631597-70631616 | None:intergenic | 45.0% |
! | CCAGATCTCATCGTTGATGA+TGG | + | chr3.3:70630020-70630039 | MS.gene75668:CDS | 45.0% |
! | GGAAAGGTTGCTGTTGTATG+TGG | + | chr3.3:70631060-70631079 | MS.gene75668:CDS | 45.0% |
! | TCATTGCCCAGATTGAGTTG+TGG | + | chr3.3:70631526-70631545 | MS.gene75668:CDS | 45.0% |
! | TCTAGCACCTTTGAAGGGTT+GGG | - | chr3.3:70629772-70629791 | None:intergenic | 45.0% |
! | TGTGCTGCTGCATTGAAACA+GGG | + | chr3.3:70631105-70631124 | MS.gene75668:CDS | 45.0% |
! | TTCTAGCACCTTTGAAGGGT+TGG | - | chr3.3:70629773-70629792 | None:intergenic | 45.0% |
! | TTGTGCTGCTGCATTGAAAC+AGG | + | chr3.3:70631104-70631123 | MS.gene75668:CDS | 45.0% |
!! | AATCTGGGCAATGACTTGGT+TGG | - | chr3.3:70631520-70631539 | None:intergenic | 45.0% |
!! | AGGGAACAAAAGAGTACCAC+TGG | - | chr3.3:70630279-70630298 | None:intergenic | 45.0% |
!! | CAACAGTGTTGGTTGGAACT+TGG | + | chr3.3:70630656-70630675 | MS.gene75668:intron | 45.0% |
!! | CCAACACTGTTGGTTCAACA+CGG | - | chr3.3:70630648-70630667 | None:intergenic | 45.0% |
!! | GATCTCATCGTTGATGATGG+TGG | + | chr3.3:70630023-70630042 | MS.gene75668:CDS | 45.0% |
!! | GTTGAACCAACAGTGTTGGT+TGG | + | chr3.3:70630649-70630668 | MS.gene75668:intron | 45.0% |
!! | TGAAGGTGTTAAGGCTGAAG+AGG | + | chr3.3:70630067-70630086 | MS.gene75668:CDS | 45.0% |
!!! | TTTAAAATAAATATAGATAA+TGG | - | chr3.3:70630826-70630845 | None:intergenic | 5.0% |
ATCGAAACCCTAACCGCTCT+CGG | + | chr3.3:70629834-70629853 | MS.gene75668:CDS | 50.0% | |
ATGTCCTGCCGAACCGAATT+CGG | + | chr3.3:70629741-70629760 | MS.gene75668:CDS | 50.0% | |
ATTGTGATGCGCTTCACACC+AGG | - | chr3.3:70631369-70631388 | None:intergenic | 50.0% | |
CATACAAGCCTGCTCACTAC+AGG | + | chr3.3:70631706-70631725 | MS.gene75668:CDS | 50.0% | |
CATGGACTTGAGACTTACCC+TGG | + | chr3.3:70631348-70631367 | MS.gene75668:CDS | 50.0% | |
CCGTGTTGAACCAACAGTGT+TGG | + | chr3.3:70630645-70630664 | MS.gene75668:intron | 50.0% | |
CTCTGAACGTGCTCTTGACT+GGG | + | chr3.3:70629983-70630002 | MS.gene75668:CDS | 50.0% | |
CTGGTTGAAACCACCACTAG+CGG | + | chr3.3:70629633-70629652 | MS.gene75668:CDS | 50.0% | |
CTGTAGTGAGCAGGCTTGTA+TGG | - | chr3.3:70631708-70631727 | None:intergenic | 50.0% | |
CTTTACCAGATGCAAGCCAG+TGG | + | chr3.3:70630260-70630279 | MS.gene75668:CDS | 50.0% | |
GAGCAGCAACCTTCTCATCA+AGG | - | chr3.3:70631605-70631624 | None:intergenic | 50.0% | |
GCCTAAGCACCTTGATGAGA+AGG | + | chr3.3:70631593-70631612 | MS.gene75668:CDS | 50.0% | |
GGAGCATGACATGACGAAAC+TGG | - | chr3.3:70631493-70631512 | None:intergenic | 50.0% | |
GGTTAGGGTTTCGATGAGGA+CGG | - | chr3.3:70629829-70629848 | None:intergenic | 50.0% | |
GTAGCTCTCATCAGTCCATC+GGG | - | chr3.3:70631024-70631043 | None:intergenic | 50.0% | |
TAGACCGGGCATTTCGACTT+CGG | - | chr3.3:70629721-70629740 | None:intergenic | 50.0% | |
TAGCTCTCATCAGTCCATCG+GGG | - | chr3.3:70631023-70631042 | None:intergenic | 50.0% | |
TCTGAACGTGCTCTTGACTG+GGG | + | chr3.3:70629984-70630003 | MS.gene75668:CDS | 50.0% | |
TTGTGATGCGCTTCACACCA+GGG | - | chr3.3:70631368-70631387 | None:intergenic | 50.0% | |
! | TGCCCAGATTGAGTTGTGGA+AGG | + | chr3.3:70631530-70631549 | MS.gene75668:CDS | 50.0% |
! | TGGTGAGTTTAGCTCCAAGC+TGG | - | chr3.3:70631638-70631657 | None:intergenic | 50.0% |
!! | GGCAATGACTTGGTTGGTGA+AGG | - | chr3.3:70631514-70631533 | None:intergenic | 50.0% |
ACCTTTCCATGCGAACACGG+CGG | - | chr3.3:70629937-70629956 | None:intergenic | 55.0% | |
ATGAGATCTGGTCCACCACC+AGG | - | chr3.3:70630011-70630030 | None:intergenic | 55.0% | |
GAGCGGTTAGGGTTTCGATG+AGG | - | chr3.3:70629833-70629852 | None:intergenic | 55.0% | |
GATTTCGAGACGGCCGAAGT+CGG | - | chr3.3:70629691-70629710 | None:intergenic | 55.0% | |
GCTCTTCATCTTGGCCAGCT+TGG | + | chr3.3:70631621-70631640 | MS.gene75668:CDS | 55.0% | |
GCTGCTGCATTGAAACAGGG+TGG | + | chr3.3:70631108-70631127 | MS.gene75668:CDS | 55.0% | |
GGCATCATTGTCTTGGCCGA+AGG | + | chr3.3:70631432-70631451 | MS.gene75668:CDS | 55.0% | |
GGCTTGTATGGACCCTCAAC+AGG | - | chr3.3:70631696-70631715 | None:intergenic | 55.0% | |
GGGATGGACCGAATTCGGTT+CGG | - | chr3.3:70629752-70629771 | None:intergenic | 55.0% | |
GGGTTGGGATGGACCGAATT+CGG | - | chr3.3:70629757-70629776 | None:intergenic | 55.0% | |
GGTCCATCCCAACCCTTCAA+AGG | + | chr3.3:70629762-70629781 | MS.gene75668:CDS | 55.0% | |
GGTTCGGCAGGACATTAGAC+CGG | - | chr3.3:70629736-70629755 | None:intergenic | 55.0% | |
GTTCGGCAGGACATTAGACC+GGG | - | chr3.3:70629735-70629754 | None:intergenic | 55.0% | |
TAGGGTTTCGATGAGGACGG+CGG | - | chr3.3:70629826-70629845 | None:intergenic | 55.0% | |
TTTCGATGAGGACGGCGGTT+TGG | - | chr3.3:70629821-70629840 | None:intergenic | 55.0% | |
! | GACATGTCCCAAGCCGACTT+CGG | + | chr3.3:70629675-70629694 | MS.gene75668:CDS | 55.0% |
! | GCACCTTTGAAGGGTTGGGA+TGG | - | chr3.3:70629768-70629787 | None:intergenic | 55.0% |
! | GCTCTGAACGTGCTCTTGAC+TGG | + | chr3.3:70629982-70630001 | MS.gene75668:CDS | 55.0% |
!! | GAGTACCACTGGCTTGCATC+TGG | - | chr3.3:70630268-70630287 | None:intergenic | 55.0% |
CACTAGCGGCCGCGAATACA+AGG | + | chr3.3:70629647-70629666 | MS.gene75668:CDS | 60.0% | |
CGGCCGCGAATACAAGGTCA+AGG | + | chr3.3:70629653-70629672 | MS.gene75668:CDS | 60.0% | |
CGGCGAGCTCGATTTCGAGA+CGG | - | chr3.3:70629701-70629720 | None:intergenic | 60.0% | |
CTCGCCGAAGTCGAAATGCC+CGG | + | chr3.3:70629714-70629733 | MS.gene75668:CDS | 60.0% | |
CTTGTATTCGCGGCCGCTAG+TGG | - | chr3.3:70629649-70629668 | None:intergenic | 60.0% | |
GTCCATCGGGGAGTGAGTGA+CGG | - | chr3.3:70631011-70631030 | None:intergenic | 60.0% | |
! | TTCAGCGCCGAGAGCGGTTA+GGG | - | chr3.3:70629844-70629863 | None:intergenic | 60.0% |
!! | TGGACCGAATTCGGTTCGGC+AGG | - | chr3.3:70629748-70629767 | None:intergenic | 60.0% |
CGTGCTCTTGACTGGGGTCC+TGG | + | chr3.3:70629990-70630009 | MS.gene75668:CDS | 65.0% | |
CTTGACTGGGGTCCTGGTGG+TGG | + | chr3.3:70629996-70630015 | MS.gene75668:CDS | 65.0% | |
GCCGCCGTGTTCGCATGGAA+AGG | + | chr3.3:70629933-70629952 | MS.gene75668:CDS | 65.0% | |
GCTCTTGACTGGGGTCCTGG+TGG | + | chr3.3:70629993-70630012 | MS.gene75668:CDS | 65.0% | |
GTATTCGCGGCCGCTAGTGG+TGG | - | chr3.3:70629646-70629665 | None:intergenic | 65.0% | |
GTCACGAGCGATGGCAGCAG+CGG | - | chr3.3:70629910-70629929 | None:intergenic | 65.0% | |
TGCCGTCACTCACTCCCCGA+TGG | + | chr3.3:70631006-70631025 | MS.gene75668:CDS | 65.0% | |
! | ACGGACTTCAGCGCCGAGAG+CGG | - | chr3.3:70629850-70629869 | None:intergenic | 65.0% |
! | AGCAGCGGCGTGGTCTTGAG+TGG | - | chr3.3:70629895-70629914 | None:intergenic | 65.0% |
! | CTCTCGGCGCTGAAGTCCGT+TGG | + | chr3.3:70629850-70629869 | MS.gene75668:CDS | 65.0% |
! | CTTCAGCGCCGAGAGCGGTT+AGG | - | chr3.3:70629845-70629864 | None:intergenic | 65.0% |
! | GAGACGGCCGAAGTCGGCTT+GGG | - | chr3.3:70629685-70629704 | None:intergenic | 65.0% |
ACAGCGCCGCCGTGTTCGCA+TGG | + | chr3.3:70629928-70629947 | MS.gene75668:CDS | 70.0% | |
CGAGACGGCCGAAGTCGGCT+TGG | - | chr3.3:70629686-70629705 | None:intergenic | 70.0% | |
GAGCGATGGCAGCAGCGGCG+TGG | - | chr3.3:70629905-70629924 | None:intergenic | 75.0% | |
GGCGGCGCTGTCACGAGCGA+TGG | - | chr3.3:70629919-70629938 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 70629624 | 70631734 | 70629624 | ID=MS.gene75668 |
chr3.3 | mRNA | 70629624 | 70631734 | 70629624 | ID=MS.gene75668.t1;Parent=MS.gene75668 |
chr3.3 | exon | 70629624 | 70630334 | 70629624 | ID=MS.gene75668.t1.exon1;Parent=MS.gene75668.t1 |
chr3.3 | CDS | 70629624 | 70630334 | 70629624 | ID=cds.MS.gene75668.t1;Parent=MS.gene75668.t1 |
chr3.3 | exon | 70630988 | 70631734 | 70630988 | ID=MS.gene75668.t1.exon2;Parent=MS.gene75668.t1 |
chr3.3 | CDS | 70630988 | 70631734 | 70630988 | ID=cds.MS.gene75668.t1;Parent=MS.gene75668.t1 |
Gene Sequence |
Protein sequence |