Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049025.t1 | XP_003630654.2 | 90.8 | 251 | 7 | 1 | 1 | 251 | 6 | 240 | 7.00E-124 | 453.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049025.t1 | Q9C5D7 | 61.1 | 239 | 77 | 1 | 12 | 250 | 9 | 231 | 6.9e-80 | 298.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049025.t1 | G7LJL7 | 90.8 | 251 | 7 | 1 | 1 | 251 | 1 | 235 | 5.1e-124 | 453.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047856 | MS.gene049025 | PPI |
| MS.gene35069 | MS.gene049025 | PPI |
| MS.gene059423 | MS.gene049025 | PPI |
| MS.gene28756 | MS.gene049025 | PPI |
| MS.gene053539 | MS.gene049025 | PPI |
| MS.gene028389 | MS.gene049025 | PPI |
| MS.gene053535 | MS.gene049025 | PPI |
| MS.gene26463 | MS.gene049025 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049025.t1 | MTR_8g101900 | 90.837 | 251 | 7 | 1 | 1 | 251 | 1 | 235 | 1.12e-166 | 460 |
| MS.gene049025.t1 | MTR_8g021225 | 68.980 | 245 | 59 | 2 | 6 | 249 | 5 | 233 | 2.49e-118 | 338 |
| MS.gene049025.t1 | MTR_6g091680 | 66.397 | 247 | 67 | 1 | 5 | 251 | 8 | 238 | 9.53e-106 | 306 |
| MS.gene049025.t1 | MTR_4g085590 | 55.000 | 240 | 91 | 2 | 12 | 250 | 23 | 246 | 1.03e-92 | 273 |
| MS.gene049025.t1 | MTR_4g094925 | 51.029 | 243 | 102 | 2 | 9 | 250 | 16 | 242 | 5.28e-86 | 256 |
| MS.gene049025.t1 | MTR_4g094815 | 50.000 | 244 | 105 | 2 | 8 | 250 | 20 | 247 | 1.38e-85 | 255 |
| MS.gene049025.t1 | MTR_4g094898 | 51.230 | 244 | 102 | 2 | 8 | 250 | 20 | 247 | 1.09e-79 | 240 |
| MS.gene049025.t1 | MTR_4g094812 | 52.083 | 240 | 98 | 2 | 12 | 250 | 22 | 245 | 8.23e-77 | 233 |
| MS.gene049025.t1 | MTR_4g094368 | 49.167 | 240 | 102 | 4 | 12 | 248 | 5 | 227 | 2.02e-75 | 228 |
| MS.gene049025.t1 | MTR_4g094925 | 49.519 | 208 | 87 | 3 | 45 | 250 | 20 | 211 | 1.22e-70 | 216 |
| MS.gene049025.t1 | MTR_4g094898 | 51.485 | 202 | 81 | 2 | 50 | 250 | 1 | 186 | 1.07e-63 | 197 |
| MS.gene049025.t1 | MTR_2g070410 | 38.362 | 232 | 118 | 5 | 18 | 249 | 91 | 297 | 2.27e-44 | 151 |
| MS.gene049025.t1 | MTR_2g070410 | 38.298 | 188 | 96 | 3 | 18 | 205 | 91 | 258 | 2.14e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049025.t1 | AT4G26220 | 61.088 | 239 | 77 | 1 | 12 | 250 | 9 | 231 | 1.84e-104 | 302 |
| MS.gene049025.t1 | AT4G34050 | 55.187 | 241 | 91 | 2 | 12 | 251 | 35 | 259 | 1.27e-92 | 273 |
| MS.gene049025.t1 | AT4G34050 | 55.187 | 241 | 91 | 2 | 12 | 251 | 62 | 286 | 1.83e-92 | 274 |
| MS.gene049025.t1 | AT1G67980 | 52.893 | 242 | 93 | 3 | 12 | 251 | 10 | 232 | 5.06e-84 | 251 |
| MS.gene049025.t1 | AT1G24735 | 52.263 | 243 | 95 | 4 | 12 | 251 | 16 | 240 | 9.18e-79 | 238 |
| MS.gene049025.t1 | AT1G67990 | 50.000 | 242 | 101 | 3 | 12 | 251 | 10 | 233 | 1.08e-76 | 232 |
| MS.gene049025.t1 | AT1G24735 | 43.345 | 293 | 94 | 5 | 12 | 250 | 16 | 290 | 1.52e-70 | 218 |
| MS.gene049025.t1 | AT1G24735 | 52.475 | 202 | 77 | 3 | 50 | 250 | 11 | 194 | 6.55e-67 | 206 |
| MS.gene049025.t1 | AT1G67980 | 55.556 | 144 | 61 | 1 | 107 | 250 | 23 | 163 | 8.16e-54 | 171 |
| MS.gene049025.t1 | AT4G34050 | 54.472 | 123 | 55 | 1 | 129 | 250 | 25 | 147 | 1.38e-44 | 147 |
| MS.gene049025.t1 | AT3G61990 | 39.545 | 220 | 108 | 5 | 30 | 249 | 95 | 289 | 3.82e-44 | 150 |
| MS.gene049025.t1 | AT3G62000 | 37.104 | 221 | 115 | 5 | 30 | 249 | 80 | 277 | 2.34e-42 | 145 |
| MS.gene049025.t1 | AT3G62000 | 35.545 | 211 | 112 | 5 | 30 | 239 | 80 | 267 | 1.47e-34 | 127 |
Find 44 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGAAACTACCGTTTC+TGG | 0.209949 | 4.1:+3458384 | None:intergenic |
| CCATGAGAGGCTTATCAAAT+TGG | 0.230744 | 4.1:-3458466 | MS.gene049025:CDS |
| TCTGGATCTACGGCTGTAAT+GGG | 0.325713 | 4.1:+3458754 | None:intergenic |
| GTCTGGATCTACGGCTGTAA+TGG | 0.340492 | 4.1:+3458753 | None:intergenic |
| TCAAAAGTACCTTCATTTGC+AGG | 0.353092 | 4.1:+3458531 | None:intergenic |
| TGCCTACGATAACACCCTTT+GGG | 0.369512 | 4.1:-3458424 | MS.gene049025:CDS |
| GTAATTCTTCAGTGGCTTCA+TGG | 0.374269 | 4.1:-3459286 | MS.gene049025:intron |
| TCTAAAAGTTTATCAAGAAC+TGG | 0.389451 | 4.1:+3458646 | None:intergenic |
| ACCTGATGCGGGTCAGCTAA+TGG | 0.395308 | 4.1:-3459256 | MS.gene049025:CDS |
| ATACAAACCTTTCCATCATA+TGG | 0.399941 | 4.1:+3459144 | None:intergenic |
| TTGCCTACGATAACACCCTT+TGG | 0.417902 | 4.1:-3458425 | MS.gene049025:CDS |
| TTTCAGAAACAAAGAGAGAA+TGG | 0.425659 | 4.1:-3458371 | MS.gene049025:CDS |
| GACAGAAAAGCTTATGAGAT+AGG | 0.427880 | 4.1:-3458733 | MS.gene049025:CDS |
| TTATCAAGAACTGGCAAAGC+TGG | 0.435178 | 4.1:+3458655 | None:intergenic |
| GCCATTAGCTGACCCGCATC+AGG | 0.436416 | 4.1:+3459255 | None:intergenic |
| TAATTCTTCAGTGGCTTCAT+GGG | 0.469413 | 4.1:-3459285 | MS.gene049025:intron |
| ATCAAATTGGTTAAGATCGG+TGG | 0.482512 | 4.1:-3458453 | MS.gene049025:CDS |
| GCACTTAACATTCCATATGA+TGG | 0.489413 | 4.1:-3459156 | MS.gene049025:CDS |
| AACTGTTGCCTTGCCAGAAA+CGG | 0.495235 | 4.1:-3458397 | MS.gene049025:CDS |
| CTTATCAAATTGGTTAAGAT+CGG | 0.511198 | 4.1:-3458456 | MS.gene049025:CDS |
| TTGAGAGTCTCTGCTTCTCG+TGG | 0.514299 | 4.1:+3459545 | None:intergenic |
| CATGGGCACTTCACCTGATG+CGG | 0.516416 | 4.1:-3459268 | MS.gene049025:CDS |
| TTTCAATGAAGCAGTTTCAA+AGG | 0.518882 | 4.1:-3458331 | MS.gene049025:CDS |
| TGAAACTACCGTTTCTGGCA+AGG | 0.521241 | 4.1:+3458389 | None:intergenic |
| ATGGGCACTTCACCTGATGC+GGG | 0.527395 | 4.1:-3459267 | MS.gene049025:CDS |
| CTGCAAAATAACTGCATTGG+TGG | 0.528279 | 4.1:+3459694 | None:intergenic |
| CCAATTTGATAAGCCTCTCA+TGG | 0.530119 | 4.1:+3458466 | None:intergenic |
| TAACATTCCATATGATGGAA+AGG | 0.530971 | 4.1:-3459151 | MS.gene049025:intron |
| GCAGAGCGAGGGCTTACTCA+AGG | 0.558409 | 4.1:-3459675 | MS.gene049025:intron |
| TGCTTCTCGTGGGTAAACAC+TGG | 0.559815 | 4.1:+3459556 | None:intergenic |
| GGCAACAGTTCCTCCCCAAA+GGG | 0.563275 | 4.1:+3458410 | None:intergenic |
| AGGCAACAGTTCCTCCCCAA+AGG | 0.565907 | 4.1:+3458409 | None:intergenic |
| TCAAATTGGTTAAGATCGGT+GGG | 0.567728 | 4.1:-3458452 | MS.gene049025:CDS |
| TGAGAGTCTCTGCTTCTCGT+GGG | 0.576132 | 4.1:+3459546 | None:intergenic |
| GCTCTGCAAAATAACTGCAT+TGG | 0.577755 | 4.1:+3459691 | None:intergenic |
| GCGACGGACTCACTATCTGC+AGG | 0.587918 | 4.1:-3458275 | MS.gene049025:CDS |
| ACTATTGGAATTACCATGAG+AGG | 0.588635 | 4.1:-3458479 | MS.gene049025:CDS |
| TTGATGCAGCCTGCAAATGA+AGG | 0.599302 | 4.1:-3458540 | MS.gene049025:intron |
| GCCTACGATAACACCCTTTG+GGG | 0.620350 | 4.1:-3458423 | MS.gene049025:CDS |
| TACGATAACACCCTTTGGGG+AGG | 0.624507 | 4.1:-3458420 | MS.gene049025:CDS |
| AGTTTCAAAGGATCCTCGTA+TGG | 0.625984 | 4.1:-3458319 | MS.gene049025:CDS |
| TCCCCAAAGGGTGTTATCGT+AGG | 0.628321 | 4.1:+3458422 | None:intergenic |
| CTGGATCTACGGCTGTAATG+GGG | 0.631123 | 4.1:+3458755 | None:intergenic |
| ACAAAAGCAAGTTCCATACG+AGG | 0.723375 | 4.1:+3458306 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAGATTAATTAAGT+AGG | + | chr4.1:3458379-3458398 | None:intergenic | 10.0% |
| !!! | TTAATTAATCTAAAATTTTG+TGG | - | chr4.1:3458381-3458400 | MS.gene049025:CDS | 10.0% |
| !! | AAATAACTTCTATGATTTAT+AGG | + | chr4.1:3458526-3458545 | None:intergenic | 15.0% |
| !! | AAAATTTGATTATGCATACA+AGG | - | chr4.1:3458554-3458573 | MS.gene049025:intron | 20.0% |
| !! | ACAATGTTAAATGAATATGT+TGG | - | chr4.1:3459068-3459087 | MS.gene049025:intron | 20.0% |
| !!! | AAAGTATCACATATAGTTTA+TGG | - | chr4.1:3458892-3458911 | MS.gene049025:intron | 20.0% |
| ! | AACTTCTATGATTTATAGGT+TGG | + | chr4.1:3458522-3458541 | None:intergenic | 25.0% |
| ! | AAGGAAAAGAAAAACCATTA+TGG | + | chr4.1:3459412-3459431 | None:intergenic | 25.0% |
| ! | AGGAAAAGAAAAACCATTAT+GGG | + | chr4.1:3459411-3459430 | None:intergenic | 25.0% |
| ! | AGTCTTAAGAATAATTACAG+AGG | + | chr4.1:3458485-3458504 | None:intergenic | 25.0% |
| ! | ATGCTGACAAAAATAACTAT+TGG | - | chr4.1:3459482-3459501 | MS.gene049025:intron | 25.0% |
| ! | ATGTTATTGTAATTCTTCAG+TGG | - | chr4.1:3458682-3458701 | MS.gene049025:CDS | 25.0% |
| ! | CTTATCAAATTGGTTAAGAT+CGG | - | chr4.1:3459520-3459539 | MS.gene049025:CDS | 25.0% |
| ! | TCTAAAAGTTTATCAAGAAC+TGG | + | chr4.1:3459333-3459352 | None:intergenic | 25.0% |
| !! | TAGTTCAAAAGACTTTTACT+TGG | + | chr4.1:3458925-3458944 | None:intergenic | 25.0% |
| AGGACTTCCATTCATAAAAA+AGG | - | chr4.1:3459263-3459282 | MS.gene049025:CDS | 30.0% | |
| ATACAAACCTTTCCATCATA+TGG | + | chr4.1:3458835-3458854 | None:intergenic | 30.0% | |
| CTAAACAGTTACAACAAACA+TGG | + | chr4.1:3458346-3458365 | None:intergenic | 30.0% | |
| GCTAAAAAGACAATTGAAGT+AGG | - | chr4.1:3458766-3458785 | MS.gene049025:CDS | 30.0% | |
| TAAATGTATGCAAAGAGAGA+GGG | + | chr4.1:3459156-3459175 | None:intergenic | 30.0% | |
| TTTCAATGAAGCAGTTTCAA+AGG | - | chr4.1:3459645-3459664 | MS.gene049025:intron | 30.0% | |
| TTTCAGAAACAAAGAGAGAA+TGG | - | chr4.1:3459605-3459624 | MS.gene049025:intron | 30.0% | |
| ! | ATTTTTGTCAGCATCAACAA+AGG | + | chr4.1:3459476-3459495 | None:intergenic | 30.0% |
| ! | CTTTTGAACTAGAACAATGA+TGG | - | chr4.1:3458934-3458953 | MS.gene049025:intron | 30.0% |
| ! | TAACATTCCATATGATGGAA+AGG | - | chr4.1:3458825-3458844 | MS.gene049025:intron | 30.0% |
| !! | GAACTTGCTTTTGTTTCAAT+AGG | - | chr4.1:3459679-3459698 | MS.gene049025:CDS | 30.0% |
| ACTATTGGAATTACCATGAG+AGG | - | chr4.1:3459497-3459516 | MS.gene049025:intron | 35.0% | |
| ATCAAATTGGTTAAGATCGG+TGG | - | chr4.1:3459523-3459542 | MS.gene049025:CDS | 35.0% | |
| ATCTCCACATATATCTTTCC+AGG | - | chr4.1:3459375-3459394 | MS.gene049025:intron | 35.0% | |
| CTAAATGTATGCAAAGAGAG+AGG | + | chr4.1:3459157-3459176 | None:intergenic | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | - | chr4.1:3459267-3459286 | MS.gene049025:CDS | 35.0% | |
| CTTCTTCTCTACCAAATTGA+CGG | + | chr4.1:3459029-3459048 | None:intergenic | 35.0% | |
| GACAGAAAAGCTTATGAGAT+AGG | - | chr4.1:3459243-3459262 | MS.gene049025:CDS | 35.0% | |
| GCACTTAACATTCCATATGA+TGG | - | chr4.1:3458820-3458839 | MS.gene049025:intron | 35.0% | |
| TAATTCTTCAGTGGCTTCAT+GGG | - | chr4.1:3458691-3458710 | MS.gene049025:CDS | 35.0% | |
| TCAAATTGGTTAAGATCGGT+GGG | - | chr4.1:3459524-3459543 | MS.gene049025:CDS | 35.0% | |
| ! | ATCTCATAAGCTTTTCTGTC+TGG | + | chr4.1:3459243-3459262 | None:intergenic | 35.0% |
| ! | ATTGAAGTAGGAGTTTTCAC+TGG | - | chr4.1:3458778-3458797 | MS.gene049025:CDS | 35.0% |
| !! | TCAAAAGTACCTTCATTTGC+AGG | + | chr4.1:3459448-3459467 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | + | chr4.1:3459273-3459292 | None:intergenic | 35.0% |
| AAACCATTATGGGTCTGACT+TGG | + | chr4.1:3459401-3459420 | None:intergenic | 40.0% | |
| ACAAAAGCAAGTTCCATACG+AGG | + | chr4.1:3459673-3459692 | None:intergenic | 40.0% | |
| AGTTTCAAAGGATCCTCGTA+TGG | - | chr4.1:3459657-3459676 | MS.gene049025:intron | 40.0% | |
| CCAATTTGATAAGCCTCTCA+TGG | + | chr4.1:3459513-3459532 | None:intergenic | 40.0% | |
| CCATGAGAGGCTTATCAAAT+TGG | - | chr4.1:3459510-3459529 | MS.gene049025:intron | 40.0% | |
| CGTCAATTTGGTAGAGAAGA+AGG | - | chr4.1:3459027-3459046 | MS.gene049025:intron | 40.0% | |
| CTGCAAAATAACTGCATTGG+TGG | + | chr4.1:3458285-3458304 | None:intergenic | 40.0% | |
| CTGTAGAAGCCAGTATGTAT+AGG | + | chr4.1:3458868-3458887 | None:intergenic | 40.0% | |
| GAATCCAATCACCGTCAATT+TGG | - | chr4.1:3459015-3459034 | MS.gene049025:intron | 40.0% | |
| GCTCTGCAAAATAACTGCAT+TGG | + | chr4.1:3458288-3458307 | None:intergenic | 40.0% | |
| GTAATTCTTCAGTGGCTTCA+TGG | - | chr4.1:3458690-3458709 | MS.gene049025:CDS | 40.0% | |
| TAGAAGCCAGTATGTATAGG+AGG | + | chr4.1:3458865-3458884 | None:intergenic | 40.0% | |
| TCTACCAAATTGACGGTGAT+TGG | + | chr4.1:3459022-3459041 | None:intergenic | 40.0% | |
| TGCTTTCCTCCTATACATAC+TGG | - | chr4.1:3458856-3458875 | MS.gene049025:intron | 40.0% | |
| TTATCAAGAACTGGCAAAGC+TGG | + | chr4.1:3459324-3459343 | None:intergenic | 40.0% | |
| TTGGCCTGGAAAGATATATG+TGG | + | chr4.1:3459382-3459401 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTGTCTGGATCTA+CGG | + | chr4.1:3459235-3459254 | None:intergenic | 40.0% |
| !! | ATACATACTGGCTTCTACAG+TGG | - | chr4.1:3458868-3458887 | MS.gene049025:intron | 40.0% |
| !! | GCTTTTGTTTCAATAGGCGA+CGG | - | chr4.1:3459685-3459704 | MS.gene049025:CDS | 40.0% |
| !! | GTTTCTGAAACTACCGTTTC+TGG | + | chr4.1:3459595-3459614 | None:intergenic | 40.0% |
| AACTGTTGCCTTGCCAGAAA+CGG | - | chr4.1:3459579-3459598 | MS.gene049025:intron | 45.0% | |
| TCTGGATCTACGGCTGTAAT+GGG | + | chr4.1:3459225-3459244 | None:intergenic | 45.0% | |
| TGACTTCTTCAGTCAGCATC+AGG | - | chr4.1:3458642-3458661 | MS.gene049025:CDS | 45.0% | |
| TGCCTACGATAACACCCTTT+GGG | - | chr4.1:3459552-3459571 | MS.gene049025:CDS | 45.0% | |
| TTGATGCAGCCTGCAAATGA+AGG | - | chr4.1:3459436-3459455 | MS.gene049025:intron | 45.0% | |
| TTGCCTACGATAACACCCTT+TGG | - | chr4.1:3459551-3459570 | MS.gene049025:CDS | 45.0% | |
| !! | GCAGTTATTTTGCAGAGCGA+GGG | - | chr4.1:3458290-3458309 | MS.gene049025:CDS | 45.0% |
| !! | TGAAACTACCGTTTCTGGCA+AGG | + | chr4.1:3459590-3459609 | None:intergenic | 45.0% |
| !! | TGCAGTTATTTTGCAGAGCG+AGG | - | chr4.1:3458289-3458308 | MS.gene049025:CDS | 45.0% |
| AGGCCAAGTCAGACCCATAA+TGG | - | chr4.1:3459395-3459414 | MS.gene049025:intron | 50.0% | |
| CTGGATCTACGGCTGTAATG+GGG | + | chr4.1:3459224-3459243 | None:intergenic | 50.0% | |
| GCCTACGATAACACCCTTTG+GGG | - | chr4.1:3459553-3459572 | MS.gene049025:CDS | 50.0% | |
| GTCTGGATCTACGGCTGTAA+TGG | + | chr4.1:3459226-3459245 | None:intergenic | 50.0% | |
| TGAGAGTCTCTGCTTCTCGT+GGG | + | chr4.1:3458433-3458452 | None:intergenic | 50.0% | |
| TGCAGGCTGCATCAAGACAA+AGG | + | chr4.1:3459431-3459450 | None:intergenic | 50.0% | |
| TGCTTCTCGTGGGTAAACAC+TGG | + | chr4.1:3458423-3458442 | None:intergenic | 50.0% | |
| TTGAGAGTCTCTGCTTCTCG+TGG | + | chr4.1:3458434-3458453 | None:intergenic | 50.0% | |
| ! | TACGATAACACCCTTTGGGG+AGG | - | chr4.1:3459556-3459575 | MS.gene049025:CDS | 50.0% |
| !! | ATTATGGGTCTGACTTGGCC+TGG | + | chr4.1:3459396-3459415 | None:intergenic | 50.0% |
| !! | TCCCCAAAGGGTGTTATCGT+AGG | + | chr4.1:3459557-3459576 | None:intergenic | 50.0% |
| ACCTGATGCGGGTCAGCTAA+TGG | - | chr4.1:3458720-3458739 | MS.gene049025:CDS | 55.0% | |
| AGGCAACAGTTCCTCCCCAA+AGG | + | chr4.1:3459570-3459589 | None:intergenic | 55.0% | |
| ATGGGCACTTCACCTGATGC+GGG | - | chr4.1:3458709-3458728 | MS.gene049025:CDS | 55.0% | |
| CATGGGCACTTCACCTGATG+CGG | - | chr4.1:3458708-3458727 | MS.gene049025:CDS | 55.0% | |
| GGCAACAGTTCCTCCCCAAA+GGG | + | chr4.1:3459569-3459588 | None:intergenic | 55.0% | |
| GCAGAGCGAGGGCTTACTCA+AGG | - | chr4.1:3458301-3458320 | MS.gene049025:CDS | 60.0% | |
| GCCATTAGCTGACCCGCATC+AGG | + | chr4.1:3458724-3458743 | None:intergenic | 60.0% | |
| ! | GCGACGGACTCACTATCTGC+AGG | - | chr4.1:3459701-3459720 | MS.gene049025:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3458263 | 3459735 | 3458263 | ID=MS.gene049025 |
| chr4.1 | mRNA | 3458263 | 3459735 | 3458263 | ID=MS.gene049025.t1;Parent=MS.gene049025 |
| chr4.1 | exon | 3459676 | 3459735 | 3459676 | ID=MS.gene049025.t1.exon1;Parent=MS.gene049025.t1 |
| chr4.1 | CDS | 3459676 | 3459735 | 3459676 | ID=cds.MS.gene049025.t1;Parent=MS.gene049025.t1 |
| chr4.1 | exon | 3459512 | 3459591 | 3459512 | ID=MS.gene049025.t1.exon2;Parent=MS.gene049025.t1 |
| chr4.1 | CDS | 3459512 | 3459591 | 3459512 | ID=cds.MS.gene049025.t1;Parent=MS.gene049025.t1 |
| chr4.1 | exon | 3459152 | 3459296 | 3459152 | ID=MS.gene049025.t1.exon3;Parent=MS.gene049025.t1 |
| chr4.1 | CDS | 3459152 | 3459296 | 3459152 | ID=cds.MS.gene049025.t1;Parent=MS.gene049025.t1 |
| chr4.1 | exon | 3458642 | 3458821 | 3458642 | ID=MS.gene049025.t1.exon4;Parent=MS.gene049025.t1 |
| chr4.1 | CDS | 3458642 | 3458821 | 3458642 | ID=cds.MS.gene049025.t1;Parent=MS.gene049025.t1 |
| chr4.1 | exon | 3458263 | 3458553 | 3458263 | ID=MS.gene049025.t1.exon5;Parent=MS.gene049025.t1 |
| chr4.1 | CDS | 3458263 | 3458553 | 3458263 | ID=cds.MS.gene049025.t1;Parent=MS.gene049025.t1 |
| Gene Sequence |
| Protein sequence |
