Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27501.t1 | RHN46708.1 | 96.1 | 410 | 13 | 2 | 1 | 409 | 1 | 408 | 2.10E-234 | 821.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27501.t1 | Q9FT97 | 75.0 | 408 | 102 | 0 | 2 | 409 | 3 | 410 | 3.0e-189 | 662.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27501.t1 | A0A396H1S7 | 96.1 | 410 | 13 | 2 | 1 | 409 | 1 | 408 | 1.5e-234 | 821.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene27501 | 0.823106 | 1.66E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene27501 | 0.837676 | 4.52E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene27501 | 0.823395 | 1.42E-53 | -1.69E-46 |
| MS.gene049260 | MS.gene27501 | 0.835118 | 2.02E-56 | -1.69E-46 |
| MS.gene049297 | MS.gene27501 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene27501 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene049382 | MS.gene27501 | 0.813535 | 2.44E-51 | -1.69E-46 |
| MS.gene049444 | MS.gene27501 | 0.830047 | 3.66E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene27501 | 0.851134 | 1.08E-60 | -1.69E-46 |
| MS.gene049915 | MS.gene27501 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene27501 | 0.806483 | 8.05E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene27501 | 0.844246 | 8.51E-59 | -1.69E-46 |
| MS.gene050227 | MS.gene27501 | 0.8292 | 5.88E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene27501 | 0.830538 | 2.78E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene27501 | 0.805289 | 1.43E-49 | -1.69E-46 |
| MS.gene050330 | MS.gene27501 | -0.831831 | 1.34E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene27501 | 0.800925 | 1.15E-48 | -1.69E-46 |
| MS.gene050558 | MS.gene27501 | 0.820786 | 5.71E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene27501 | -0.857568 | 1.49E-62 | -1.69E-46 |
| MS.gene050629 | MS.gene27501 | -0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene27501 | 0.817841 | 2.68E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene27501 | 0.804478 | 2.12E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene27501 | 0.802784 | 4.76E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene27501 | 0.804603 | 2.00E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene27501 | 0.834459 | 2.96E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene27501 | 0.834931 | 2.25E-56 | -1.69E-46 |
| MS.gene050987 | MS.gene27501 | 0.84004 | 1.10E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene27501 | 0.833517 | 5.10E-56 | -1.69E-46 |
| MS.gene051662 | MS.gene27501 | 0.812176 | 4.84E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene27501 | 0.84871 | 5.15E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene27501 | 0.822156 | 2.75E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene27501 | 0.837705 | 4.44E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene27501 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene27501 | 0.841591 | 4.33E-58 | -1.69E-46 |
| MS.gene052255 | MS.gene27501 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene052286 | MS.gene27501 | 0.810086 | 1.37E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene27501 | 0.814267 | 1.68E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene27501 | -0.821764 | 3.39E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene27501 | 0.815378 | 9.53E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene27501 | 0.806927 | 6.48E-50 | -1.69E-46 |
| MS.gene052856 | MS.gene27501 | 0.831921 | 1.27E-55 | -1.69E-46 |
| MS.gene052858 | MS.gene27501 | 0.812255 | 4.65E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene27501 | 0.810118 | 1.35E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene27501 | 0.804982 | 1.66E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene27501 | 0.80964 | 1.71E-50 | -1.69E-46 |
| MS.gene053216 | MS.gene27501 | 0.835868 | 1.31E-56 | -1.69E-46 |
| MS.gene053559 | MS.gene27501 | 0.823408 | 1.41E-53 | -1.69E-46 |
| MS.gene053577 | MS.gene27501 | 0.811518 | 6.72E-51 | -1.69E-46 |
| MS.gene053630 | MS.gene27501 | 0.822993 | 1.76E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene27501 | 0.857571 | 1.49E-62 | -1.69E-46 |
| MS.gene054184 | MS.gene27501 | 0.803463 | 3.45E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene27501 | 0.841175 | 5.57E-58 | -1.69E-46 |
| MS.gene054542 | MS.gene27501 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene27501 | 0.8889 | 3.92E-73 | -1.69E-46 |
| MS.gene054942 | MS.gene27501 | 0.81156 | 6.59E-51 | -1.69E-46 |
| MS.gene054983 | MS.gene27501 | 0.804239 | 2.38E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene27501 | 0.804924 | 1.71E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene27501 | 0.807694 | 4.46E-50 | -1.69E-46 |
| MS.gene055422 | MS.gene27501 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene27501 | -0.833737 | 4.49E-56 | -1.69E-46 |
| MS.gene056875 | MS.gene27501 | 0.823377 | 1.43E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene27501 | 0.825578 | 4.34E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene27501 | 0.807542 | 4.80E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene27501 | 0.802168 | 6.38E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene27501 | 0.839638 | 1.41E-57 | -1.69E-46 |
| MS.gene057754 | MS.gene27501 | 0.842586 | 2.36E-58 | -1.69E-46 |
| MS.gene05795 | MS.gene27501 | 0.805881 | 1.08E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene27501 | 0.813802 | 2.13E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene27501 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene27501 | 0.826393 | 2.78E-54 | -1.69E-46 |
| MS.gene058399 | MS.gene27501 | 0.850896 | 1.26E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene27501 | 0.801321 | 9.52E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene27501 | 0.856564 | 2.95E-62 | -1.69E-46 |
| MS.gene058833 | MS.gene27501 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene27501 | 0.802931 | 4.44E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene27501 | 0.804783 | 1.83E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene27501 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene27501 | 0.824333 | 8.54E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene27501 | 0.817716 | 2.86E-52 | -1.69E-46 |
| MS.gene059899 | MS.gene27501 | 0.857351 | 1.73E-62 | -1.69E-46 |
| MS.gene060084 | MS.gene27501 | 0.861732 | 8.34E-64 | -1.69E-46 |
| MS.gene060297 | MS.gene27501 | 0.816725 | 4.77E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene27501 | 0.809727 | 1.64E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene27501 | 0.837664 | 4.55E-57 | -1.69E-46 |
| MS.gene060619 | MS.gene27501 | 0.804984 | 1.66E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene27501 | 0.836908 | 7.10E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene27501 | 0.830718 | 2.51E-55 | -1.69E-46 |
| MS.gene060998 | MS.gene27501 | 0.824303 | 8.68E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene27501 | 0.826239 | 3.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27501 | MS.gene052452 | PPI |
| MS.gene07480 | MS.gene27501 | PPI |
| MS.gene61401 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene042963 | PPI |
| MS.gene27501 | MS.gene052453 | PPI |
| MS.gene07479 | MS.gene27501 | PPI |
| MS.gene004947 | MS.gene27501 | PPI |
| MS.gene004948 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene83318 | PPI |
| MS.gene005005 | MS.gene27501 | PPI |
| MS.gene069814 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene049391 | PPI |
| MS.gene27501 | MS.gene042962 | PPI |
| MS.gene27501 | MS.gene05536 | PPI |
| MS.gene27501 | MS.gene61402 | PPI |
| MS.gene062192 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene062191 | PPI |
| MS.gene06516 | MS.gene27501 | PPI |
| MS.gene86814 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene013419 | PPI |
| MS.gene059347 | MS.gene27501 | PPI |
| MS.gene27501 | MS.gene05535 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27501.t1 | MTR_7g073650 | 95.854 | 410 | 14 | 2 | 1 | 409 | 1 | 408 | 0.0 | 808 |
| MS.gene27501.t1 | MTR_7g073640 | 91.198 | 409 | 33 | 3 | 2 | 409 | 3 | 409 | 0.0 | 768 |
| MS.gene27501.t1 | MTR_6g069140 | 65.946 | 370 | 125 | 1 | 38 | 407 | 51 | 419 | 0.0 | 526 |
| MS.gene27501.t1 | MTR_1g077520 | 61.084 | 406 | 155 | 2 | 5 | 409 | 6 | 409 | 0.0 | 524 |
| MS.gene27501.t1 | MTR_1g077480 | 64.690 | 371 | 130 | 1 | 37 | 407 | 42 | 411 | 0.0 | 523 |
| MS.gene27501.t1 | MTR_6g086575 | 61.000 | 400 | 153 | 3 | 9 | 407 | 7 | 404 | 0.0 | 520 |
| MS.gene27501.t1 | MTR_6g086625 | 60.848 | 401 | 153 | 3 | 9 | 407 | 7 | 405 | 0.0 | 519 |
| MS.gene27501.t1 | MTR_3g094160 | 56.010 | 416 | 165 | 4 | 9 | 407 | 11 | 425 | 9.13e-167 | 474 |
| MS.gene27501.t1 | MTR_1g077520 | 64.615 | 325 | 115 | 0 | 9 | 333 | 10 | 334 | 5.34e-157 | 446 |
| MS.gene27501.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 101 | 225 | 4.56e-75 | 233 |
| MS.gene27501.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 185 | 309 | 1.73e-73 | 232 |
| MS.gene27501.t1 | MTR_0279s0030 | 90.400 | 125 | 11 | 1 | 286 | 409 | 250 | 374 | 3.57e-73 | 233 |
| MS.gene27501.t1 | MTR_1g078410 | 43.556 | 225 | 68 | 3 | 9 | 225 | 5 | 178 | 2.99e-49 | 165 |
| MS.gene27501.t1 | MTR_2g096530 | 27.701 | 361 | 171 | 13 | 42 | 314 | 27 | 385 | 5.15e-22 | 98.6 |
| MS.gene27501.t1 | MTR_8g089725 | 26.282 | 468 | 227 | 19 | 53 | 405 | 38 | 502 | 3.89e-21 | 95.5 |
| MS.gene27501.t1 | MTR_8g089745 | 24.682 | 393 | 196 | 12 | 10 | 317 | 8 | 385 | 8.66e-21 | 94.4 |
| MS.gene27501.t1 | MTR_8g089740 | 26.396 | 394 | 189 | 14 | 10 | 317 | 3 | 381 | 1.02e-20 | 94.7 |
| MS.gene27501.t1 | MTR_8g089745 | 24.682 | 393 | 196 | 12 | 10 | 317 | 8 | 385 | 2.10e-20 | 94.0 |
| MS.gene27501.t1 | MTR_8g089735 | 26.068 | 468 | 228 | 19 | 53 | 405 | 38 | 502 | 2.17e-20 | 93.6 |
| MS.gene27501.t1 | MTR_3g086580 | 24.438 | 356 | 177 | 11 | 49 | 314 | 36 | 389 | 1.86e-18 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27501.t1 | AT5G08380 | 75.000 | 408 | 102 | 0 | 2 | 409 | 3 | 410 | 0.0 | 650 |
| MS.gene27501.t1 | AT5G08370 | 66.484 | 364 | 121 | 1 | 42 | 405 | 29 | 391 | 0.0 | 526 |
| MS.gene27501.t1 | AT5G08370 | 66.120 | 366 | 123 | 1 | 40 | 405 | 1 | 365 | 0.0 | 525 |
| MS.gene27501.t1 | AT5G08380 | 76.752 | 314 | 73 | 0 | 2 | 315 | 3 | 316 | 0.0 | 509 |
| MS.gene27501.t1 | AT3G56310 | 58.656 | 387 | 154 | 3 | 24 | 407 | 46 | 429 | 4.59e-164 | 468 |
| MS.gene27501.t1 | AT3G56310 | 55.039 | 387 | 144 | 4 | 24 | 407 | 46 | 405 | 1.83e-147 | 425 |
| MS.gene27501.t1 | AT3G26380 | 24.148 | 352 | 177 | 11 | 53 | 317 | 42 | 390 | 7.08e-18 | 85.9 |
| MS.gene27501.t1 | AT3G26380 | 24.148 | 352 | 177 | 11 | 53 | 317 | 42 | 390 | 1.39e-17 | 85.5 |
Find 99 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGGCTCCTCTTCTTCT+AGG | 0.178877 | 7.2:-31139130 | MS.gene27501:intron |
| ATATGGGCAGGTCCTCTTTC+AGG | 0.213190 | 7.2:-31138624 | MS.gene27501:CDS |
| CTGGTGACATAACCGATAAT+TGG | 0.234201 | 7.2:-31139810 | MS.gene27501:CDS |
| AGATTAATGTAACAGCTAAT+TGG | 0.263880 | 7.2:-31138560 | MS.gene27501:CDS |
| CGAACTTAATCGCGATAATA+AGG | 0.278598 | 7.2:-31140838 | MS.gene27501:intron |
| GAGATATGCATCCAGCTAAA+TGG | 0.281278 | 7.2:-31139864 | MS.gene27501:CDS |
| ATTTGAGATGGTGGTGGTTT+TGG | 0.309054 | 7.2:-31141597 | MS.gene27501:CDS |
| TACCCATGATGCAAAAGTTT+TGG | 0.334662 | 7.2:+31140469 | None:intergenic |
| TTTCCAACCTCAAGCATATC+AGG | 0.349661 | 7.2:+31139465 | None:intergenic |
| CTTATTATCGCGATTAAGTT+CGG | 0.355063 | 7.2:+31140839 | None:intergenic |
| AGAAGAAACCTTCTTGCTAA+TGG | 0.364226 | 7.2:-31141494 | MS.gene27501:CDS |
| TTGTTCAAGCAAGAGACCTT+TGG | 0.381720 | 7.2:-31138509 | MS.gene27501:CDS |
| GCTTGGCGTACAAGCTAAAA+AGG | 0.382915 | 7.2:-31138936 | MS.gene27501:CDS |
| CTTGGAGATAGTCTCTAATA+AGG | 0.383311 | 7.2:-31139077 | MS.gene27501:CDS |
| GCTGTTGTGTTGCTTAATAA+AGG | 0.393013 | 7.2:-31138591 | MS.gene27501:CDS |
| TGTTCAAGCAAGAGACCTTT+GGG | 0.394528 | 7.2:-31138508 | MS.gene27501:CDS |
| AGATATGCATCCAGCTAAAT+GGG | 0.395124 | 7.2:-31139863 | MS.gene27501:CDS |
| GATTAATGTAACAGCTAATT+GGG | 0.410058 | 7.2:-31138559 | MS.gene27501:CDS |
| AGGTCCTCTTTCAGGATATA+GGG | 0.411330 | 7.2:-31138616 | MS.gene27501:CDS |
| GCTGATGCCCTTGTTTCAAC+TGG | 0.414005 | 7.2:-31141031 | MS.gene27501:CDS |
| CAGGTCCTCTTTCAGGATAT+AGG | 0.414530 | 7.2:-31138617 | MS.gene27501:CDS |
| ATGAGAAAATACCAGTTTCT+CGG | 0.417413 | 7.2:+31141207 | None:intergenic |
| ATTAAAGCCCGAGTCATAAC+AGG | 0.421626 | 7.2:+31140173 | None:intergenic |
| TGTTATACAGGTGGAATAGT+TGG | 0.421868 | 7.2:-31141265 | MS.gene27501:intron |
| CCTTGGTAAAACTCCTCCTA+TGG | 0.424348 | 7.2:-31141471 | MS.gene27501:CDS |
| TATCGTTCACTTCAGTTTGT+GGG | 0.428514 | 7.2:-31139418 | MS.gene27501:CDS |
| TGGTGACATAACCGATAATT+GGG | 0.429608 | 7.2:-31139809 | MS.gene27501:CDS |
| ATATCGTTCACTTCAGTTTG+TGG | 0.432561 | 7.2:-31139419 | MS.gene27501:CDS |
| TTGTTGCTGCAGATGATTGT+TGG | 0.434548 | 7.2:-31140863 | MS.gene27501:intron |
| ACTTTAGCACCCCATTTAGC+TGG | 0.437464 | 7.2:+31139853 | None:intergenic |
| AACCTTCTTGCTAATGGCCT+TGG | 0.440891 | 7.2:-31141488 | MS.gene27501:CDS |
| AAACCAACCAAACATGCAAA+AGG | 0.441393 | 7.2:+31141570 | None:intergenic |
| AGCTAAATGGGGTGCTAAAG+TGG | 0.444772 | 7.2:-31139851 | MS.gene27501:CDS |
| CTTGGAATTTATTCAGATGC+AGG | 0.449478 | 7.2:-31140629 | MS.gene27501:CDS |
| GTGCTAAAGTGGGAAATAGT+TGG | 0.469009 | 7.2:-31139840 | MS.gene27501:CDS |
| TACCAAGGCCATTAGCAAGA+AGG | 0.473441 | 7.2:+31141486 | None:intergenic |
| TGTTGCTGCAGATGATTGTT+GGG | 0.474807 | 7.2:-31140862 | MS.gene27501:intron |
| TTATGTACCTATGTTGACAT+AGG | 0.479023 | 7.2:+31140988 | None:intergenic |
| CATAGCAAGGGTCTTAAGCT+TGG | 0.485258 | 7.2:-31140647 | MS.gene27501:CDS |
| TCACATAGCGAAAAGAAGAT+TGG | 0.486370 | 7.2:+31140137 | None:intergenic |
| CAGTTTGTGGGCTATTTCAA+AGG | 0.488558 | 7.2:-31139406 | MS.gene27501:intron |
| ATGCTTGAGGTTGGAAATGG+AGG | 0.493055 | 7.2:-31139459 | MS.gene27501:CDS |
| GATATGCTTGAGGTTGGAAA+TGG | 0.493237 | 7.2:-31139462 | MS.gene27501:CDS |
| ACATGTAGCAAACAAATGCC+TGG | 0.496161 | 7.2:-31140518 | MS.gene27501:CDS |
| GGAAATAGTTGGAGAACTAC+TGG | 0.506903 | 7.2:-31139829 | MS.gene27501:CDS |
| TATGACTCGGGCTTTAATGA+AGG | 0.508006 | 7.2:-31140168 | MS.gene27501:CDS |
| TGCAGATTATGTTCATAGCA+AGG | 0.510065 | 7.2:-31140660 | MS.gene27501:CDS |
| TCAACTGGTCTATCTAAGCT+TGG | 0.514706 | 7.2:-31141016 | MS.gene27501:CDS |
| CTTACACGCATGTGATTCTA+CGG | 0.515503 | 7.2:+31138274 | None:intergenic |
| TACACAATGAGGAGTAGGAT+TGG | 0.519358 | 7.2:-31141620 | None:intergenic |
| AAACAAATGCCTGGTTCACT+AGG | 0.520373 | 7.2:-31140509 | MS.gene27501:CDS |
| CTTGGTAAAACTCCTCCTAT+GGG | 0.521865 | 7.2:-31141470 | MS.gene27501:CDS |
| GCTGTTACATTAATCTTCTG+AGG | 0.525815 | 7.2:+31138567 | None:intergenic |
| AGCTTGCAAGACCTGGTGGT+TGG | 0.526013 | 7.2:-31139605 | MS.gene27501:CDS |
| AAATGTGACTAAAGAGACCT+TGG | 0.527242 | 7.2:-31139095 | MS.gene27501:CDS |
| GATCCTGATATGCTTGAGGT+TGG | 0.538064 | 7.2:-31139468 | MS.gene27501:CDS |
| GCAAGACCTGGTGGTTGGAA+TGG | 0.539179 | 7.2:-31139600 | MS.gene27501:intron |
| GATTGGATTTGAGATGGTGG+TGG | 0.540657 | 7.2:-31141603 | MS.gene27501:CDS |
| TTTGTTGGATAGATATGGGC+AGG | 0.543001 | 7.2:-31138636 | MS.gene27501:intron |
| AGATCACAGCCTAGAAGAAG+AGG | 0.543289 | 7.2:+31139121 | None:intergenic |
| GCAGATTATGTTCATAGCAA+GGG | 0.548297 | 7.2:-31140659 | MS.gene27501:CDS |
| TAGATAGACCAGTTGAAACA+AGG | 0.549426 | 7.2:+31141023 | None:intergenic |
| TATGCTGAGCTTGCAAGACC+TGG | 0.553013 | 7.2:-31139612 | MS.gene27501:CDS |
| TTGGAATTTATTCAGATGCA+GGG | 0.559186 | 7.2:-31140628 | MS.gene27501:intron |
| GCTACCCTATATCCTGAAAG+AGG | 0.563682 | 7.2:+31138612 | None:intergenic |
| AACCAACCAAACATGCAAAA+GGG | 0.563850 | 7.2:+31141571 | None:intergenic |
| TGGAGTACACAATGAGGAGT+AGG | 0.565957 | 7.2:-31141625 | None:intergenic |
| AACTCATGACCTAGTGAACC+AGG | 0.568821 | 7.2:+31140500 | None:intergenic |
| TAGGTATCCTGTTATGACTC+GGG | 0.570771 | 7.2:-31140180 | MS.gene27501:CDS |
| TAGGATTGGATTTGAGATGG+TGG | 0.572502 | 7.2:-31141606 | MS.gene27501:CDS |
| TTGACTACCTACCTCACAGT+GGG | 0.572699 | 7.2:+31140309 | None:intergenic |
| ATAGGTATCCTGTTATGACT+CGG | 0.578098 | 7.2:-31140181 | MS.gene27501:intron |
| ACTCGGGCTTTAATGAAGGC+AGG | 0.580189 | 7.2:-31140164 | MS.gene27501:CDS |
| GGATACACCTATGTCAACAT+AGG | 0.584008 | 7.2:-31140995 | MS.gene27501:intron |
| TTTATGCAGTATGATTTCAA+GGG | 0.593167 | 7.2:-31139652 | MS.gene27501:intron |
| CTTATTAGAGACTATCTCCA+AGG | 0.595408 | 7.2:+31139078 | None:intergenic |
| GCTAAATGGGGTGCTAAAGT+GGG | 0.605638 | 7.2:-31139850 | MS.gene27501:CDS |
| AGATAACATCAACAACTATG+AGG | 0.607792 | 7.2:-31141528 | MS.gene27501:CDS |
| TACAATGAATTACCTCCCAA+AGG | 0.608422 | 7.2:+31138493 | None:intergenic |
| AACAGATCCTGATATGCTTG+AGG | 0.609688 | 7.2:-31139472 | MS.gene27501:intron |
| TTCTAACCATTCCAACCACC+AGG | 0.610518 | 7.2:+31139594 | None:intergenic |
| TATCACACGATAGATTCGCT+TGG | 0.610905 | 7.2:-31138953 | MS.gene27501:intron |
| GCAAGAGCTTTGATGCCAGA+AGG | 0.611987 | 7.2:+31140680 | None:intergenic |
| GCTGAGCTTGCAAGACCTGG+TGG | 0.617565 | 7.2:-31139609 | MS.gene27501:CDS |
| ACATAACCGATAATTGGGAA+AGG | 0.622539 | 7.2:-31139804 | MS.gene27501:intron |
| ACAGCTAATTGGGATGACAT+TGG | 0.629945 | 7.2:-31138549 | MS.gene27501:CDS |
| GAGTAGGATTGGATTTGAGA+TGG | 0.633817 | 7.2:-31141609 | MS.gene27501:CDS |
| TGCTTGAGGTTGGAAATGGA+GGG | 0.639239 | 7.2:-31139458 | MS.gene27501:CDS |
| GAAGTTATTACAGTTAACCA+AGG | 0.643404 | 7.2:-31139055 | MS.gene27501:intron |
| AGATAGACCAGTTGAAACAA+GGG | 0.645698 | 7.2:+31141024 | None:intergenic |
| CAGGATGGAAGGTGATGCTG+AGG | 0.646471 | 7.2:-31138912 | MS.gene27501:intron |
| TCAGTGACATACCCCATAGG+AGG | 0.646596 | 7.2:+31141458 | None:intergenic |
| AATTCAGTGACATACCCCAT+AGG | 0.669127 | 7.2:+31141455 | None:intergenic |
| TAACATCAACAACTATGAGG+AGG | 0.682908 | 7.2:-31141525 | MS.gene27501:CDS |
| TTGGTAAAACTCCTCCTATG+GGG | 0.687837 | 7.2:-31141469 | MS.gene27501:intron |
| GATATGCATCCAGCTAAATG+GGG | 0.703250 | 7.2:-31139862 | MS.gene27501:CDS |
| TCAAGCAAGAGACCTTTGGG+AGG | 0.722019 | 7.2:-31138505 | MS.gene27501:intron |
| TTTGACTACCTACCTCACAG+TGG | 0.727048 | 7.2:+31140308 | None:intergenic |
| ATGAATCAAAGCCCACTGTG+AGG | 0.728024 | 7.2:-31140320 | MS.gene27501:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAAATAAATACAAA+GGG | + | chr7.2:31139278-31139297 | None:intergenic | 10.0% |
| !! | TGAAAAATAAATAAATACAA+AGG | + | chr7.2:31139279-31139298 | None:intergenic | 10.0% |
| !! | TTTAATGAATTCAAAATAAA+AGG | - | chr7.2:31141099-31141118 | MS.gene27501:intron | 10.0% |
| !!! | TCATTTTTTCAAATTATTAT+TGG | - | chr7.2:31139873-31139892 | MS.gene27501:intron | 10.0% |
| !!! | ATAACATTTTTTTGTTATAC+AGG | - | chr7.2:31138584-31138603 | MS.gene27501:CDS | 15.0% |
| !!! | CAATTAATTTTAAATGATCT+CGG | - | chr7.2:31140602-31140621 | MS.gene27501:intron | 15.0% |
| !!! | TCAATTTTTTTACTTTGTAA+GGG | - | chr7.2:31138934-31138953 | MS.gene27501:CDS | 15.0% |
| !!! | TTCAATTTTTTTACTTTGTA+AGG | - | chr7.2:31138933-31138952 | MS.gene27501:CDS | 15.0% |
| !! | GTTAATTACTTGTATAGAAT+TGG | - | chr7.2:31141013-31141032 | MS.gene27501:CDS | 20.0% |
| !! | TAGTAATACTTTAATTAGCA+AGG | - | chr7.2:31138467-31138486 | MS.gene27501:intron | 20.0% |
| !!! | AAACATGATTTTGAAAAACA+TGG | - | chr7.2:31139646-31139665 | MS.gene27501:CDS | 20.0% |
| ! | AAAAAATCAACATTTCCTTC+TGG | - | chr7.2:31139166-31139185 | MS.gene27501:intron | 25.0% |
| ! | AAACATAGTGCCAAATTATT+AGG | + | chr7.2:31141176-31141195 | None:intergenic | 25.0% |
| ! | AATCCAACAAAATTAAGAGA+AGG | + | chr7.2:31138432-31138451 | None:intergenic | 25.0% |
| ! | AATGATTGTGCCTAATAATT+TGG | - | chr7.2:31141163-31141182 | MS.gene27501:intron | 25.0% |
| ! | AGATTAATGTAACAGCTAAT+TGG | - | chr7.2:31141301-31141320 | MS.gene27501:intron | 25.0% |
| ! | ATTGTTTGATCTCAAATCAA+TGG | + | chr7.2:31140570-31140589 | None:intergenic | 25.0% |
| ! | GATTAATGTAACAGCTAATT+GGG | - | chr7.2:31141302-31141321 | MS.gene27501:intron | 25.0% |
| ! | TAATCAAGCAAAATAAGCAT+TGG | + | chr7.2:31139481-31139500 | None:intergenic | 25.0% |
| ! | TACATGCTTTCACATAAATA+AGG | + | chr7.2:31140508-31140527 | None:intergenic | 25.0% |
| ! | TATAAGATGCAGTTCTATTA+GGG | + | chr7.2:31139619-31139638 | None:intergenic | 25.0% |
| ! | TATGTTTAATTGCACTTTGT+TGG | - | chr7.2:31141470-31141489 | MS.gene27501:CDS | 25.0% |
| ! | TCTAAAGATTTATGATACTG+AGG | - | chr7.2:31138556-31138575 | MS.gene27501:CDS | 25.0% |
| ! | TTATAAGATGCAGTTCTATT+AGG | + | chr7.2:31139620-31139639 | None:intergenic | 25.0% |
| ! | TTCACATAAATAAGGATGTT+TGG | + | chr7.2:31140500-31140519 | None:intergenic | 25.0% |
| ! | TTGGTTACATAGATATTACT+AGG | + | chr7.2:31139462-31139481 | None:intergenic | 25.0% |
| ! | TTTATGCAGTATGATTTCAA+GGG | - | chr7.2:31140209-31140228 | MS.gene27501:intron | 25.0% |
| !! | AAACTTTCTTTGTTTGTTAG+GGG | - | chr7.2:31139975-31139994 | MS.gene27501:intron | 25.0% |
| !! | ATTCCTTCTCTTAATTTTGT+TGG | - | chr7.2:31138426-31138445 | MS.gene27501:intron | 25.0% |
| !! | ATTTTATTAGCTAGTAGCTA+AGG | + | chr7.2:31140181-31140200 | None:intergenic | 25.0% |
| !! | CAAACTTTCTTTGTTTGTTA+GGG | - | chr7.2:31139974-31139993 | MS.gene27501:intron | 25.0% |
| !! | CCAAATACTGTTATGTTTTA+GGG | - | chr7.2:31139130-31139149 | MS.gene27501:intron | 25.0% |
| !! | TCAAACTTTCTTTGTTTGTT+AGG | - | chr7.2:31139973-31139992 | MS.gene27501:intron | 25.0% |
| !! | TCCAAATACTGTTATGTTTT+AGG | - | chr7.2:31139129-31139148 | MS.gene27501:intron | 25.0% |
| !! | TGTTTAACAACTTTTTGTGA+AGG | - | chr7.2:31140297-31140316 | MS.gene27501:intron | 25.0% |
| !! | TTCTTATATGCATGTTTTGT+TGG | - | chr7.2:31141210-31141229 | MS.gene27501:intron | 25.0% |
| !! | TTTTATGCAGTATGATTTCA+AGG | - | chr7.2:31140208-31140227 | MS.gene27501:intron | 25.0% |
| !! | TTTTTACCTTTCCCAATTAT+CGG | + | chr7.2:31140066-31140085 | None:intergenic | 25.0% |
| !!! | ACATTTTGTGAATAAGTTGA+GGG | - | chr7.2:31141561-31141580 | MS.gene27501:CDS | 25.0% |
| !!! | ACATTTTTTTGTTATACAGG+TGG | - | chr7.2:31138587-31138606 | MS.gene27501:CDS | 25.0% |
| !!! | ATGTTTTGTTGGATAGATAT+GGG | - | chr7.2:31141221-31141240 | MS.gene27501:CDS | 25.0% |
| AAATGAAGCACAGTACAATA+CGG | + | chr7.2:31140685-31140704 | None:intergenic | 30.0% | |
| ACATGTAAAATACCTGTGAA+AGG | + | chr7.2:31139329-31139348 | None:intergenic | 30.0% | |
| ACGAAATCGTATGTTGTATT+CGG | + | chr7.2:31140986-31141005 | None:intergenic | 30.0% | |
| AGATAACATCAACAACTATG+AGG | - | chr7.2:31138333-31138352 | MS.gene27501:intron | 30.0% | |
| ATGAGAAAATACCAGTTTCT+CGG | + | chr7.2:31138657-31138676 | None:intergenic | 30.0% | |
| CAAAGAAAGTTTGATTAGAG+AGG | + | chr7.2:31139967-31139986 | None:intergenic | 30.0% | |
| CCCTAAAACATAACAGTATT+TGG | + | chr7.2:31139133-31139152 | None:intergenic | 30.0% | |
| CTTATTATCGCGATTAAGTT+CGG | + | chr7.2:31139025-31139044 | None:intergenic | 30.0% | |
| GAAGTTATTACAGTTAACCA+AGG | - | chr7.2:31140806-31140825 | MS.gene27501:intron | 30.0% | |
| GGATAAAGATTAATTGTACG+TGG | + | chr7.2:31138970-31138989 | None:intergenic | 30.0% | |
| TTATGTACCTATGTTGACAT+AGG | + | chr7.2:31138876-31138895 | None:intergenic | 30.0% | |
| TTGGAATTTATTCAGATGCA+GGG | - | chr7.2:31139233-31139252 | MS.gene27501:intron | 30.0% | |
| ! | AAAAACCATGCACTCAATTT+TGG | - | chr7.2:31140081-31140100 | MS.gene27501:intron | 30.0% |
| ! | ATGTGAAAGCATGTATTGTA+CGG | - | chr7.2:31140513-31140532 | MS.gene27501:CDS | 30.0% |
| ! | CACATTTTGTGAATAAGTTG+AGG | - | chr7.2:31141560-31141579 | MS.gene27501:CDS | 30.0% |
| !! | CATGTTTTGTTGGATAGATA+TGG | - | chr7.2:31141220-31141239 | MS.gene27501:CDS | 30.0% |
| !! | TAGAGAGGAGTACTTAAAAT+TGG | + | chr7.2:31139952-31139971 | None:intergenic | 30.0% |
| !!! | GCTTATTTTGCTTGATTACA+GGG | - | chr7.2:31139483-31139502 | MS.gene27501:intron | 30.0% |
| !!! | TGCTTATTTTGCTTGATTAC+AGG | - | chr7.2:31139482-31139501 | MS.gene27501:intron | 30.0% |
| !!! | TGTTATGTTTTAGGGTAATC+TGG | - | chr7.2:31139138-31139157 | MS.gene27501:intron | 30.0% |
| AAACCAACCAAACATGCAAA+AGG | + | chr7.2:31138294-31138313 | None:intergenic | 35.0% | |
| AAATGTGACTAAAGAGACCT+TGG | - | chr7.2:31140766-31140785 | MS.gene27501:intron | 35.0% | |
| AACATGGCCTTCTTATGTAT+AGG | - | chr7.2:31139662-31139681 | MS.gene27501:intron | 35.0% | |
| AACCAACCAAACATGCAAAA+GGG | + | chr7.2:31138293-31138312 | None:intergenic | 35.0% | |
| AATTGGATGCTATAAAGCAC+CGG | + | chr7.2:31139935-31139954 | None:intergenic | 35.0% | |
| ACATAACCGATAATTGGGAA+AGG | - | chr7.2:31140057-31140076 | MS.gene27501:intron | 35.0% | |
| AGAAGAAACCTTCTTGCTAA+TGG | - | chr7.2:31138367-31138386 | MS.gene27501:intron | 35.0% | |
| AGATAGACCAGTTGAAACAA+GGG | + | chr7.2:31138840-31138859 | None:intergenic | 35.0% | |
| AGATATGCATCCAGCTAAAT+GGG | - | chr7.2:31139998-31140017 | MS.gene27501:intron | 35.0% | |
| ATAGGTATCCTGTTATGACT+CGG | - | chr7.2:31139680-31139699 | MS.gene27501:intron | 35.0% | |
| ATATCGTTCACTTCAGTTTG+TGG | - | chr7.2:31140442-31140461 | MS.gene27501:intron | 35.0% | |
| ATCTACGTAGCACATATTGA+AGG | - | chr7.2:31139786-31139805 | MS.gene27501:intron | 35.0% | |
| ATTGGTGCATATGTCAGTAT+CGG | - | chr7.2:31139891-31139910 | MS.gene27501:intron | 35.0% | |
| CAGGATACCTATACATAAGA+AGG | + | chr7.2:31139672-31139691 | None:intergenic | 35.0% | |
| CGAACTTAATCGCGATAATA+AGG | - | chr7.2:31139023-31139042 | MS.gene27501:intron | 35.0% | |
| CTTATTAGAGACTATCTCCA+AGG | + | chr7.2:31140786-31140805 | None:intergenic | 35.0% | |
| CTTGGAATTTATTCAGATGC+AGG | - | chr7.2:31139232-31139251 | MS.gene27501:intron | 35.0% | |
| CTTGGAGATAGTCTCTAATA+AGG | - | chr7.2:31140784-31140803 | MS.gene27501:intron | 35.0% | |
| GAAAAAATGATCCGAGAAAC+TGG | - | chr7.2:31138643-31138662 | MS.gene27501:intron | 35.0% | |
| GCAGATTATGTTCATAGCAA+GGG | - | chr7.2:31139202-31139221 | MS.gene27501:intron | 35.0% | |
| GCTGTTACATTAATCTTCTG+AGG | + | chr7.2:31141297-31141316 | None:intergenic | 35.0% | |
| TAACATCAACAACTATGAGG+AGG | - | chr7.2:31138336-31138355 | MS.gene27501:intron | 35.0% | |
| TACAATGAATTACCTCCCAA+AGG | + | chr7.2:31141371-31141390 | None:intergenic | 35.0% | |
| TACTGCTGAGGTTATAAGTA+AGG | - | chr7.2:31141494-31141513 | MS.gene27501:CDS | 35.0% | |
| TAGATAGACCAGTTGAAACA+AGG | + | chr7.2:31138841-31138860 | None:intergenic | 35.0% | |
| TATCGTTCACTTCAGTTTGT+GGG | - | chr7.2:31140443-31140462 | MS.gene27501:intron | 35.0% | |
| TCACATAGCGAAAAGAAGAT+TGG | + | chr7.2:31139727-31139746 | None:intergenic | 35.0% | |
| TCTGCAGCAACAAAAAATTG+TGG | + | chr7.2:31138991-31139010 | None:intergenic | 35.0% | |
| TCTTTATTCTGACCTTTCAC+AGG | - | chr7.2:31139314-31139333 | MS.gene27501:intron | 35.0% | |
| TGACAAATTATGTGTCACCT+TGG | + | chr7.2:31140826-31140845 | None:intergenic | 35.0% | |
| TGCAGATTATGTTCATAGCA+AGG | - | chr7.2:31139201-31139220 | MS.gene27501:intron | 35.0% | |
| TGGTGACATAACCGATAATT+GGG | - | chr7.2:31140052-31140071 | MS.gene27501:intron | 35.0% | |
| TGTTATACAGGTGGAATAGT+TGG | - | chr7.2:31138596-31138615 | MS.gene27501:CDS | 35.0% | |
| ! | ATGCCAAAACTTTTGCATCA+TGG | - | chr7.2:31139389-31139408 | MS.gene27501:intron | 35.0% |
| ! | ATTCTAAAAGCACACTGTCT+CGG | + | chr7.2:31141146-31141165 | None:intergenic | 35.0% |
| ! | CTTGCTTGAACAACAGTTTT+TGG | + | chr7.2:31141345-31141364 | None:intergenic | 35.0% |
| ! | TACCCATGATGCAAAAGTTT+TGG | + | chr7.2:31139395-31139414 | None:intergenic | 35.0% |
| ! | TCTTCTTTTCGCTATGTGAA+TGG | - | chr7.2:31139728-31139747 | MS.gene27501:intron | 35.0% |
| ! | TGCCAAAACTTTTGCATCAT+GGG | - | chr7.2:31139390-31139409 | MS.gene27501:intron | 35.0% |
| !! | ATGCAAAAGTTTTGGCATCT+TGG | + | chr7.2:31139387-31139406 | None:intergenic | 35.0% |
| !! | GCTGTTGTGTTGCTTAATAA+AGG | - | chr7.2:31141270-31141289 | MS.gene27501:intron | 35.0% |
| !! | TACTGTGCTTCATTTTTCAC+TGG | - | chr7.2:31140690-31140709 | MS.gene27501:CDS | 35.0% |
| !!! | ATGTTTTAGGGTAATCTGGT+GGG | - | chr7.2:31139142-31139161 | MS.gene27501:intron | 35.0% |
| !!! | TATGTTTTAGGGTAATCTGG+TGG | - | chr7.2:31139141-31139160 | MS.gene27501:intron | 35.0% |
| !!! | TTCATTTTTCACTGGTTCAC+CGG | - | chr7.2:31140698-31140717 | MS.gene27501:CDS | 35.0% |
| AAACAAATGCCTGGTTCACT+AGG | - | chr7.2:31139352-31139371 | MS.gene27501:intron | 40.0% | |
| AACAGATCCTGATATGCTTG+AGG | - | chr7.2:31140389-31140408 | MS.gene27501:intron | 40.0% | |
| AATTCAGTGACATACCCCAT+AGG | + | chr7.2:31138409-31138428 | None:intergenic | 40.0% | |
| ACAAGCTAAAAAGGTCAGGA+TGG | - | chr7.2:31140934-31140953 | MS.gene27501:intron | 40.0% | |
| ACAGCTAATTGGGATGACAT+TGG | - | chr7.2:31141312-31141331 | MS.gene27501:intron | 40.0% | |
| ACATGTAGCAAACAAATGCC+TGG | - | chr7.2:31139343-31139362 | MS.gene27501:intron | 40.0% | |
| ACCAACCAAAATTGAGTGCA+TGG | + | chr7.2:31140089-31140108 | None:intergenic | 40.0% | |
| AGCTAGTAGCTAAGGATAGT+AGG | + | chr7.2:31140173-31140192 | None:intergenic | 40.0% | |
| AGGTCCTCTTTCAGGATATA+GGG | - | chr7.2:31141245-31141264 | MS.gene27501:CDS | 40.0% | |
| ATTAAAGCCCGAGTCATAAC+AGG | + | chr7.2:31139691-31139710 | None:intergenic | 40.0% | |
| CTGGTGACATAACCGATAAT+TGG | - | chr7.2:31140051-31140070 | MS.gene27501:intron | 40.0% | |
| CTTACACGCATGTGATTCTA+CGG | + | chr7.2:31141590-31141609 | None:intergenic | 40.0% | |
| CTTGGTAAAACTCCTCCTAT+GGG | - | chr7.2:31138391-31138410 | MS.gene27501:intron | 40.0% | |
| GAGATATGCATCCAGCTAAA+TGG | - | chr7.2:31139997-31140016 | MS.gene27501:intron | 40.0% | |
| GAGTAGGATTGGATTTGAGA+TGG | - | chr7.2:31138252-31138271 | MS.gene27501:CDS | 40.0% | |
| GATATGCATCCAGCTAAATG+GGG | - | chr7.2:31139999-31140018 | MS.gene27501:intron | 40.0% | |
| GATATGCTTGAGGTTGGAAA+TGG | - | chr7.2:31140399-31140418 | MS.gene27501:intron | 40.0% | |
| GATCTGATGTACATATGTGC+CGG | - | chr7.2:31139913-31139932 | MS.gene27501:intron | 40.0% | |
| GGAAATAGTTGGAGAACTAC+TGG | - | chr7.2:31140032-31140051 | MS.gene27501:intron | 40.0% | |
| GGATACACCTATGTCAACAT+AGG | - | chr7.2:31138866-31138885 | MS.gene27501:intron | 40.0% | |
| GGCGTACAATCTTAATCCAA+CGG | - | chr7.2:31141120-31141139 | MS.gene27501:intron | 40.0% | |
| GTGCTAAAGTGGGAAATAGT+TGG | - | chr7.2:31140021-31140040 | MS.gene27501:intron | 40.0% | |
| TAGGTATCCTGTTATGACTC+GGG | - | chr7.2:31139681-31139700 | MS.gene27501:intron | 40.0% | |
| TATCACACGATAGATTCGCT+TGG | - | chr7.2:31140908-31140927 | MS.gene27501:intron | 40.0% | |
| TGAATACTGCCAGTGAATTC+AGG | + | chr7.2:31140540-31140559 | None:intergenic | 40.0% | |
| TGTTCAAGCAAGAGACCTTT+GGG | - | chr7.2:31141353-31141372 | MS.gene27501:intron | 40.0% | |
| TGTTGCTGCAGATGATTGTT+GGG | - | chr7.2:31138999-31139018 | MS.gene27501:intron | 40.0% | |
| TTGGTAAAACTCCTCCTATG+GGG | - | chr7.2:31138392-31138411 | MS.gene27501:intron | 40.0% | |
| TTGTTCAAGCAAGAGACCTT+TGG | - | chr7.2:31141352-31141371 | MS.gene27501:intron | 40.0% | |
| TTGTTGCTGCAGATGATTGT+TGG | - | chr7.2:31138998-31139017 | MS.gene27501:intron | 40.0% | |
| TTTCCAACCTCAAGCATATC+AGG | + | chr7.2:31140399-31140418 | None:intergenic | 40.0% | |
| TTTGTTGGATAGATATGGGC+AGG | - | chr7.2:31141225-31141244 | MS.gene27501:CDS | 40.0% | |
| ! | CAGTTTGTGGGCTATTTCAA+AGG | - | chr7.2:31140455-31140474 | MS.gene27501:intron | 40.0% |
| ! | GCACATATTGAAGGTGTATC+CGG | - | chr7.2:31139795-31139814 | MS.gene27501:intron | 40.0% |
| ! | TAGGATTGGATTTGAGATGG+TGG | - | chr7.2:31138255-31138274 | MS.gene27501:CDS | 40.0% |
| ! | TATGACTCGGGCTTTAATGA+AGG | - | chr7.2:31139693-31139712 | MS.gene27501:intron | 40.0% |
| ! | TCAACTGGTCTATCTAAGCT+TGG | - | chr7.2:31138845-31138864 | MS.gene27501:intron | 40.0% |
| !! | ACCATGCACTCAATTTTGGT+TGG | - | chr7.2:31140085-31140104 | MS.gene27501:intron | 40.0% |
| !! | GCTTGAACAACAGTTTTTGG+AGG | + | chr7.2:31141342-31141361 | None:intergenic | 40.0% |
| !!! | ATTTGAGATGGTGGTGGTTT+TGG | - | chr7.2:31138264-31138283 | MS.gene27501:CDS | 40.0% |
| AACCTTCTTGCTAATGGCCT+TGG | - | chr7.2:31138373-31138392 | MS.gene27501:intron | 45.0% | |
| AACTCATGACCTAGTGAACC+AGG | + | chr7.2:31139364-31139383 | None:intergenic | 45.0% | |
| ACTTTAGCACCCCATTTAGC+TGG | + | chr7.2:31140011-31140030 | None:intergenic | 45.0% | |
| AGATCACAGCCTAGAAGAAG+AGG | + | chr7.2:31140743-31140762 | None:intergenic | 45.0% | |
| AGCCTGCAATAAACCTTCAC+CGG | + | chr7.2:31140720-31140739 | None:intergenic | 45.0% | |
| ATGAATCAAAGCCCACTGTG+AGG | - | chr7.2:31139541-31139560 | MS.gene27501:intron | 45.0% | |
| ATGCTTGAGGTTGGAAATGG+AGG | - | chr7.2:31140402-31140421 | MS.gene27501:intron | 45.0% | |
| CACTTTGTTGGATACTGCTG+AGG | - | chr7.2:31141482-31141501 | MS.gene27501:CDS | 45.0% | |
| CAGGTCCTCTTTCAGGATAT+AGG | - | chr7.2:31141244-31141263 | MS.gene27501:CDS | 45.0% | |
| CATAGCAAGGGTCTTAAGCT+TGG | - | chr7.2:31139214-31139233 | MS.gene27501:intron | 45.0% | |
| CCTTGGTAAAACTCCTCCTA+TGG | - | chr7.2:31138390-31138409 | MS.gene27501:intron | 45.0% | |
| GATCCTGATATGCTTGAGGT+TGG | - | chr7.2:31140393-31140412 | MS.gene27501:intron | 45.0% | |
| GCGTACAAGCTAAAAAGGTC+AGG | - | chr7.2:31140930-31140949 | MS.gene27501:intron | 45.0% | |
| GCTAAAAAGGTCAGGATGGA+AGG | - | chr7.2:31140938-31140957 | MS.gene27501:intron | 45.0% | |
| GCTACCCTATATCCTGAAAG+AGG | + | chr7.2:31141252-31141271 | None:intergenic | 45.0% | |
| GCTTGGCGTACAAGCTAAAA+AGG | - | chr7.2:31140925-31140944 | MS.gene27501:intron | 45.0% | |
| TACCAAGGCCATTAGCAAGA+AGG | + | chr7.2:31138378-31138397 | None:intergenic | 45.0% | |
| TATCCGGTATCTGACATGTG+CGG | - | chr7.2:31139811-31139830 | MS.gene27501:CDS | 45.0% | |
| TGCTTGAGGTTGGAAATGGA+GGG | - | chr7.2:31140403-31140422 | MS.gene27501:intron | 45.0% | |
| TGTGACGCAGTTAGAGATCT+GGG | + | chr7.2:31140650-31140669 | None:intergenic | 45.0% | |
| TTCTAACCATTCCAACCACC+AGG | + | chr7.2:31140270-31140289 | None:intergenic | 45.0% | |
| TTGACTACCTACCTCACAGT+GGG | + | chr7.2:31139555-31139574 | None:intergenic | 45.0% | |
| TTGTACGGACCTGAATTCAC+TGG | - | chr7.2:31140528-31140547 | MS.gene27501:CDS | 45.0% | |
| TTTGACTACCTACCTCACAG+TGG | + | chr7.2:31139556-31139575 | None:intergenic | 45.0% | |
| ! | AGCTAAATGGGGTGCTAAAG+TGG | - | chr7.2:31140010-31140029 | MS.gene27501:intron | 45.0% |
| ! | CCATAGGAGGAGTTTTACCA+AGG | + | chr7.2:31138393-31138412 | None:intergenic | 45.0% |
| ! | GACCCTTTTGCATGTTTGGT+TGG | - | chr7.2:31138288-31138307 | MS.gene27501:CDS | 45.0% |
| ! | GATTGGATTTGAGATGGTGG+TGG | - | chr7.2:31138258-31138277 | MS.gene27501:CDS | 45.0% |
| ! | GCTAAATGGGGTGCTAAAGT+GGG | - | chr7.2:31140011-31140030 | MS.gene27501:intron | 45.0% |
| ! | TGGTGACCCTTTTGCATGTT+TGG | - | chr7.2:31138284-31138303 | MS.gene27501:CDS | 45.0% |
| !! | AAACAAGGGCATCAGCTGTA+AGG | + | chr7.2:31138826-31138845 | None:intergenic | 45.0% |
| !! | CTCGGTTGCTGATTTGCAAT+TGG | - | chr7.2:31140620-31140639 | MS.gene27501:intron | 45.0% |
| ATATGGGCAGGTCCTCTTTC+AGG | - | chr7.2:31141237-31141256 | MS.gene27501:CDS | 50.0% | |
| ATCAAAGCCCACTGTGAGGT+AGG | - | chr7.2:31139545-31139564 | MS.gene27501:intron | 50.0% | |
| CAACCGCACATGTCAGATAC+CGG | + | chr7.2:31139817-31139836 | None:intergenic | 50.0% | |
| CACCGGTGAAGGTTTATTGC+AGG | - | chr7.2:31140715-31140734 | MS.gene27501:intron | 50.0% | |
| CTGTGACGCAGTTAGAGATC+TGG | + | chr7.2:31140651-31140670 | None:intergenic | 50.0% | |
| TATGCTGAGCTTGCAAGACC+TGG | - | chr7.2:31140249-31140268 | MS.gene27501:intron | 50.0% | |
| TCAAGCAAGAGACCTTTGGG+AGG | - | chr7.2:31141356-31141375 | MS.gene27501:intron | 50.0% | |
| TCAGTGACATACCCCATAGG+AGG | + | chr7.2:31138406-31138425 | None:intergenic | 50.0% | |
| TTGCAGGCTCCTCTTCTTCT+AGG | - | chr7.2:31140731-31140750 | MS.gene27501:intron | 50.0% | |
| ! | ACTCGGGCTTTAATGAAGGC+AGG | - | chr7.2:31139697-31139716 | MS.gene27501:intron | 50.0% |
| ! | GCAAGAGCTTTGATGCCAGA+AGG | + | chr7.2:31139184-31139203 | None:intergenic | 50.0% |
| ! | GCTGATGCCCTTGTTTCAAC+TGG | - | chr7.2:31138830-31138849 | MS.gene27501:intron | 50.0% |
| !! | TTTCACTGGTTCACCGGTGA+AGG | - | chr7.2:31140704-31140723 | MS.gene27501:CDS | 50.0% |
| AGCTTGCAAGACCTGGTGGT+TGG | - | chr7.2:31140256-31140275 | MS.gene27501:intron | 55.0% | |
| CAGGATGGAAGGTGATGCTG+AGG | - | chr7.2:31140949-31140968 | MS.gene27501:intron | 55.0% | |
| GCAAGACCTGGTGGTTGGAA+TGG | - | chr7.2:31140261-31140280 | MS.gene27501:intron | 55.0% | |
| AAGCACACTGTCTCGGCCGT+TGG | + | chr7.2:31141139-31141158 | None:intergenic | 60.0% | |
| GCTGAGCTTGCAAGACCTGG+TGG | - | chr7.2:31140252-31140271 | MS.gene27501:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 31138247 | 31141636 | 31138247 | ID=MS.gene27501 |
| chr7.2 | mRNA | 31138247 | 31141636 | 31138247 | ID=MS.gene27501.t1;Parent=MS.gene27501 |
| chr7.2 | exon | 31141470 | 31141636 | 31141470 | ID=MS.gene27501.t1.exon1;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31141470 | 31141636 | 31141470 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31141219 | 31141277 | 31141219 | ID=MS.gene27501.t1.exon2;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31141219 | 31141277 | 31141219 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140996 | 31141052 | 31140996 | ID=MS.gene27501.t1.exon3;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140996 | 31141052 | 31140996 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140839 | 31140873 | 31140839 | ID=MS.gene27501.t1.exon4;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140839 | 31140873 | 31140839 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140629 | 31140732 | 31140629 | ID=MS.gene27501.t1.exon5;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140629 | 31140732 | 31140629 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140472 | 31140547 | 31140472 | ID=MS.gene27501.t1.exon6;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140472 | 31140547 | 31140472 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140321 | 31140379 | 31140321 | ID=MS.gene27501.t1.exon7;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140321 | 31140379 | 31140321 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31140134 | 31140199 | 31140134 | ID=MS.gene27501.t1.exon8;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31140134 | 31140199 | 31140134 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31139805 | 31139888 | 31139805 | ID=MS.gene27501.t1.exon9;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31139805 | 31139888 | 31139805 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31139601 | 31139665 | 31139601 | ID=MS.gene27501.t1.exon10;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31139601 | 31139665 | 31139601 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31139407 | 31139489 | 31139407 | ID=MS.gene27501.t1.exon11;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31139407 | 31139489 | 31139407 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31139056 | 31139146 | 31139056 | ID=MS.gene27501.t1.exon12;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31139056 | 31139146 | 31139056 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31138913 | 31138962 | 31138913 | ID=MS.gene27501.t1.exon13;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31138913 | 31138962 | 31138913 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31138506 | 31138646 | 31138506 | ID=MS.gene27501.t1.exon14;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31138506 | 31138646 | 31138506 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| chr7.2 | exon | 31138247 | 31138339 | 31138247 | ID=MS.gene27501.t1.exon15;Parent=MS.gene27501.t1 |
| chr7.2 | CDS | 31138247 | 31138339 | 31138247 | ID=cds.MS.gene27501.t1;Parent=MS.gene27501.t1 |
| Gene Sequence |
| Protein sequence |
