Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050058.t1 | XP_024640944.1 | 94.1 | 438 | 26 | 0 | 1 | 438 | 1 | 438 | 3.40E-182 | 647.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050058.t1 | Q38813 | 53.6 | 375 | 169 | 3 | 64 | 438 | 30 | 399 | 1.4e-80 | 301.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050058.t1 | A0A072UQH8 | 94.1 | 438 | 26 | 0 | 1 | 438 | 1 | 438 | 2.5e-182 | 647.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050058 | MS.gene059290 | PPI |
MS.gene050058 | MS.gene50294 | PPI |
MS.gene83734 | MS.gene050058 | PPI |
MS.gene050058 | MS.gene99077 | PPI |
MS.gene050058 | MS.gene045133 | PPI |
MS.gene050058 | MS.gene75493 | PPI |
MS.gene74302 | MS.gene050058 | PPI |
MS.gene066618 | MS.gene050058 | PPI |
MS.gene050058 | MS.gene46832 | PPI |
MS.gene050058 | MS.gene052188 | PPI |
MS.gene050058 | MS.gene92849 | PPI |
MS.gene050058 | MS.gene35518 | PPI |
MS.gene050058 | MS.gene034372 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050058.t1 | MTR_5g065160 | 95.434 | 438 | 20 | 0 | 1 | 438 | 1 | 438 | 0.0 | 870 |
MS.gene050058.t1 | MTR_5g065160 | 95.434 | 438 | 20 | 0 | 1 | 438 | 1 | 438 | 0.0 | 867 |
MS.gene050058.t1 | MTR_5g065160 | 95.205 | 438 | 20 | 1 | 1 | 438 | 1 | 437 | 0.0 | 861 |
MS.gene050058.t1 | MTR_5g065160 | 95.338 | 429 | 20 | 0 | 10 | 438 | 3 | 431 | 0.0 | 851 |
MS.gene050058.t1 | MTR_4g023470 | 41.457 | 357 | 180 | 5 | 77 | 419 | 80 | 421 | 2.04e-89 | 279 |
MS.gene050058.t1 | MTR_3g027580 | 40.110 | 364 | 204 | 5 | 69 | 426 | 73 | 428 | 2.91e-87 | 273 |
MS.gene050058.t1 | MTR_4g023490 | 34.483 | 377 | 210 | 7 | 76 | 431 | 9 | 369 | 7.81e-66 | 216 |
MS.gene050058.t1 | MTR_3g087030 | 33.423 | 371 | 215 | 9 | 80 | 433 | 79 | 434 | 7.52e-62 | 207 |
MS.gene050058.t1 | MTR_2g104030 | 34.406 | 404 | 240 | 7 | 36 | 423 | 29 | 423 | 3.06e-59 | 202 |
MS.gene050058.t1 | MTR_6g471050 | 31.325 | 332 | 205 | 7 | 109 | 423 | 7 | 332 | 9.35e-43 | 156 |
MS.gene050058.t1 | MTR_8g006430 | 28.338 | 367 | 213 | 14 | 70 | 408 | 1 | 345 | 2.49e-33 | 130 |
MS.gene050058.t1 | MTR_3g108020 | 27.195 | 353 | 208 | 11 | 83 | 420 | 4 | 322 | 1.89e-26 | 109 |
MS.gene050058.t1 | MTR_4g015840 | 28.696 | 345 | 220 | 11 | 83 | 417 | 4 | 332 | 2.40e-26 | 109 |
MS.gene050058.t1 | MTR_2g087660 | 26.757 | 370 | 228 | 10 | 75 | 420 | 5 | 355 | 1.96e-25 | 107 |
MS.gene050058.t1 | MTR_7g109340 | 28.161 | 348 | 217 | 11 | 75 | 417 | 18 | 337 | 2.52e-25 | 106 |
MS.gene050058.t1 | MTR_4g078850 | 27.195 | 353 | 220 | 12 | 83 | 417 | 4 | 337 | 4.93e-25 | 105 |
MS.gene050058.t1 | MTR_2g014470 | 27.557 | 352 | 213 | 12 | 83 | 416 | 4 | 331 | 1.89e-24 | 103 |
MS.gene050058.t1 | MTR_2g090705 | 26.975 | 367 | 202 | 13 | 83 | 421 | 4 | 332 | 5.33e-23 | 99.8 |
MS.gene050058.t1 | MTR_4g050420 | 26.446 | 363 | 236 | 12 | 75 | 420 | 5 | 353 | 1.91e-22 | 99.4 |
MS.gene050058.t1 | MTR_2g014480 | 26.039 | 361 | 206 | 15 | 83 | 412 | 4 | 334 | 2.75e-21 | 94.7 |
MS.gene050058.t1 | MTR_2g087660 | 27.575 | 301 | 178 | 8 | 75 | 354 | 5 | 286 | 1.20e-20 | 92.8 |
MS.gene050058.t1 | MTR_5g065860 | 46.269 | 67 | 36 | 0 | 79 | 145 | 44 | 110 | 1.26e-13 | 68.6 |
MS.gene050058.t1 | MTR_1g029470 | 47.143 | 70 | 37 | 0 | 81 | 150 | 4 | 73 | 3.18e-12 | 68.2 |
MS.gene050058.t1 | MTR_5g004570 | 36.522 | 115 | 59 | 2 | 81 | 195 | 4 | 104 | 3.33e-12 | 66.6 |
MS.gene050058.t1 | MTR_1g029460 | 47.143 | 70 | 37 | 0 | 81 | 150 | 4 | 73 | 5.14e-12 | 67.8 |
MS.gene050058.t1 | MTR_4g015840 | 29.412 | 153 | 100 | 4 | 268 | 417 | 108 | 255 | 1.68e-11 | 64.7 |
MS.gene050058.t1 | MTR_7g112360 | 42.424 | 66 | 34 | 1 | 84 | 145 | 17 | 82 | 5.92e-11 | 60.1 |
MS.gene050058.t1 | MTR_7g069480 | 50.820 | 61 | 29 | 1 | 85 | 145 | 29 | 88 | 7.34e-11 | 64.7 |
MS.gene050058.t1 | MTR_7g085600 | 36.170 | 94 | 54 | 3 | 83 | 171 | 54 | 146 | 8.41e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050058.t1 | AT1G28210 | 59.897 | 389 | 151 | 3 | 50 | 438 | 16 | 399 | 1.29e-169 | 482 |
MS.gene050058.t1 | AT1G28210 | 59.897 | 389 | 151 | 3 | 50 | 438 | 16 | 399 | 1.77e-169 | 481 |
MS.gene050058.t1 | AT1G28210 | 59.897 | 389 | 151 | 3 | 50 | 438 | 16 | 399 | 2.67e-169 | 482 |
MS.gene050058.t1 | AT5G48030 | 40.761 | 368 | 210 | 5 | 68 | 429 | 80 | 445 | 4.99e-86 | 270 |
MS.gene050058.t1 | AT2G22360 | 32.514 | 366 | 214 | 6 | 76 | 423 | 79 | 429 | 2.08e-59 | 201 |
MS.gene050058.t1 | AT4G39960 | 33.609 | 363 | 225 | 6 | 74 | 423 | 76 | 435 | 7.45e-59 | 199 |
MS.gene050058.t1 | AT4G39960 | 33.609 | 363 | 225 | 6 | 74 | 423 | 76 | 435 | 7.45e-59 | 199 |
MS.gene050058.t1 | AT1G80030 | 32.208 | 385 | 242 | 6 | 64 | 433 | 58 | 438 | 2.18e-55 | 191 |
MS.gene050058.t1 | AT1G80030 | 32.208 | 385 | 242 | 6 | 64 | 433 | 58 | 438 | 2.84e-55 | 191 |
MS.gene050058.t1 | AT1G80030 | 32.208 | 385 | 242 | 6 | 64 | 433 | 58 | 438 | 2.84e-55 | 191 |
MS.gene050058.t1 | AT1G80030 | 32.208 | 385 | 242 | 6 | 64 | 433 | 58 | 438 | 2.84e-55 | 191 |
MS.gene050058.t1 | AT3G17830 | 31.620 | 389 | 240 | 8 | 58 | 422 | 31 | 417 | 9.83e-55 | 190 |
MS.gene050058.t1 | AT1G10350 | 25.068 | 367 | 219 | 12 | 83 | 420 | 4 | 343 | 3.09e-26 | 109 |
MS.gene050058.t1 | AT2G20560 | 27.762 | 353 | 211 | 12 | 83 | 417 | 4 | 330 | 1.11e-24 | 104 |
MS.gene050058.t1 | AT5G25530 | 26.857 | 350 | 225 | 10 | 83 | 420 | 4 | 334 | 6.53e-24 | 102 |
MS.gene050058.t1 | AT3G62600 | 27.378 | 347 | 221 | 11 | 80 | 421 | 23 | 343 | 7.59e-24 | 102 |
MS.gene050058.t1 | AT5G22060 | 25.063 | 395 | 251 | 12 | 70 | 439 | 1 | 375 | 5.21e-23 | 100 |
MS.gene050058.t1 | AT5G01390 | 28.286 | 350 | 210 | 13 | 83 | 417 | 4 | 327 | 5.96e-22 | 96.7 |
MS.gene050058.t1 | AT1G59725 | 23.714 | 350 | 227 | 9 | 83 | 420 | 4 | 325 | 8.70e-22 | 96.3 |
MS.gene050058.t1 | AT5G25530 | 26.257 | 358 | 225 | 11 | 83 | 420 | 4 | 342 | 2.19e-21 | 95.5 |
MS.gene050058.t1 | AT3G44110 | 25.134 | 374 | 238 | 10 | 70 | 420 | 1 | 355 | 7.48e-21 | 94.7 |
MS.gene050058.t1 | AT3G44110 | 25.146 | 342 | 214 | 10 | 70 | 388 | 1 | 323 | 9.18e-17 | 81.6 |
MS.gene050058.t1 | AT1G71000 | 47.059 | 68 | 32 | 1 | 82 | 145 | 7 | 74 | 2.69e-14 | 70.9 |
MS.gene050058.t1 | AT3G08910 | 30.097 | 206 | 104 | 7 | 83 | 254 | 4 | 203 | 3.57e-14 | 73.6 |
MS.gene050058.t1 | AT1G71000 | 47.059 | 68 | 32 | 1 | 82 | 145 | 7 | 74 | 5.16e-14 | 70.1 |
MS.gene050058.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 81 | 202 | 4 | 115 | 5.15e-13 | 70.5 |
MS.gene050058.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 81 | 202 | 4 | 115 | 5.15e-13 | 70.5 |
MS.gene050058.t1 | AT1G56300 | 43.056 | 72 | 37 | 1 | 78 | 145 | 8 | 79 | 5.46e-13 | 65.9 |
MS.gene050058.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 81 | 202 | 4 | 115 | 6.35e-13 | 70.1 |
MS.gene050058.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 81 | 202 | 4 | 115 | 6.35e-13 | 70.1 |
MS.gene050058.t1 | AT2G21510 | 36.885 | 122 | 67 | 2 | 81 | 202 | 4 | 115 | 6.81e-13 | 69.7 |
MS.gene050058.t1 | AT4G28480 | 45.714 | 70 | 37 | 1 | 83 | 151 | 4 | 73 | 7.86e-13 | 69.3 |
MS.gene050058.t1 | AT2G33735 | 40.260 | 77 | 41 | 1 | 82 | 153 | 21 | 97 | 1.32e-12 | 64.7 |
MS.gene050058.t1 | AT2G33735 | 40.260 | 77 | 41 | 1 | 82 | 153 | 21 | 97 | 1.32e-12 | 64.7 |
MS.gene050058.t1 | AT4G28480 | 45.714 | 70 | 37 | 1 | 83 | 151 | 4 | 73 | 1.46e-12 | 68.9 |
MS.gene050058.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 83 | 151 | 4 | 73 | 2.02e-12 | 67.4 |
MS.gene050058.t1 | AT5G18140 | 41.667 | 84 | 45 | 2 | 66 | 146 | 57 | 139 | 2.71e-12 | 68.2 |
MS.gene050058.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 83 | 151 | 4 | 73 | 2.79e-12 | 66.6 |
MS.gene050058.t1 | AT5G16650 | 43.284 | 67 | 38 | 0 | 79 | 145 | 7 | 73 | 3.03e-12 | 63.9 |
MS.gene050058.t1 | AT5G01390 | 44.286 | 70 | 38 | 1 | 83 | 151 | 4 | 73 | 3.05e-12 | 67.4 |
MS.gene050058.t1 | AT3G12170 | 36.134 | 119 | 64 | 3 | 79 | 197 | 7 | 113 | 7.64e-12 | 65.9 |
MS.gene050058.t1 | AT1G56300 | 43.056 | 72 | 37 | 1 | 78 | 145 | 8 | 79 | 8.07e-12 | 63.5 |
MS.gene050058.t1 | AT5G16650 | 43.284 | 67 | 38 | 0 | 79 | 145 | 7 | 73 | 8.69e-12 | 63.9 |
MS.gene050058.t1 | AT3G12170 | 36.134 | 119 | 64 | 3 | 79 | 197 | 43 | 149 | 1.15e-11 | 65.9 |
MS.gene050058.t1 | AT4G39150 | 35.714 | 126 | 63 | 3 | 81 | 202 | 4 | 115 | 1.25e-11 | 66.2 |
MS.gene050058.t1 | AT4G39150 | 35.714 | 126 | 63 | 3 | 81 | 202 | 4 | 115 | 1.25e-11 | 66.2 |
MS.gene050058.t1 | AT4G39150 | 35.714 | 126 | 63 | 3 | 81 | 202 | 4 | 115 | 1.25e-11 | 66.2 |
MS.gene050058.t1 | AT3G08970 | 49.180 | 61 | 30 | 1 | 85 | 145 | 29 | 88 | 7.36e-11 | 64.7 |
MS.gene050058.t1 | AT3G08970 | 49.180 | 61 | 30 | 1 | 85 | 145 | 29 | 88 | 7.36e-11 | 64.7 |
MS.gene050058.t1 | AT1G76700 | 46.154 | 65 | 35 | 0 | 81 | 145 | 4 | 68 | 8.18e-11 | 63.9 |
MS.gene050058.t1 | AT5G06910 | 32.773 | 119 | 68 | 2 | 79 | 197 | 25 | 131 | 8.45e-11 | 63.2 |
Find 99 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTGTCTTGTGGAGGATC+TGG | 0.259419 | 5.4:-50648276 | MS.gene050058:CDS |
GTTGAGGTGCCTACTTTATC+AGG | 0.261637 | 5.4:-50644638 | MS.gene050058:CDS |
GTTCAATATCTGAAGGAAAT+TGG | 0.300864 | 5.4:-50641868 | MS.gene050058:intron |
CCGCTGAGCAAAACTATTAT+CGG | 0.336092 | 5.4:-50653038 | MS.gene050058:CDS |
TGCTCACGGTTCAGAGAATA+TGG | 0.339296 | 5.4:-50649790 | MS.gene050058:CDS |
CCAGCAGCATTCCCACCTTC+TGG | 0.357293 | 5.4:+50647812 | None:intergenic |
GGATTATTCTTATTTGCATC+TGG | 0.362373 | 5.4:+50650151 | None:intergenic |
CGAAATCTGAATGGAATTCT+CGG | 0.363658 | 5.4:+50653337 | None:intergenic |
GAGTTTATACATTAAAATAA+AGG | 0.366846 | 5.4:-50647771 | MS.gene050058:intron |
AGGATCTGGCCGCATTATTA+AGG | 0.367591 | 5.4:-50648384 | MS.gene050058:intron |
GAACTGGTAGGCGTGGATTC+AGG | 0.369088 | 5.4:-50647851 | MS.gene050058:intron |
ATTTGCAAAGGAGGAAATAA+AGG | 0.370140 | 5.4:-50641900 | MS.gene050058:CDS |
TTTCGTTATGTTTATGCTAC+AGG | 0.371107 | 5.4:-50653319 | MS.gene050058:intron |
ATGAAACTGAAGAAAGAAAA+TGG | 0.400834 | 5.4:+50653574 | None:intergenic |
GTTTGTCTTGTGGAGGATCT+GGG | 0.403834 | 5.4:-50648275 | MS.gene050058:CDS |
CGCAACTCTATTACCGCAAA+TGG | 0.404570 | 5.4:+50641636 | None:intergenic |
GGTTCAGAGAATATGGAATA+TGG | 0.404928 | 5.4:-50649783 | MS.gene050058:CDS |
GTAATGCATGTTGATGTAAA+TGG | 0.411283 | 5.4:+50648413 | None:intergenic |
GGAGGATCTGGGGTTATTGA+AGG | 0.414748 | 5.4:-50648264 | MS.gene050058:CDS |
TGCATGATGGACAAACTGTT+CGG | 0.427134 | 5.4:+50648572 | None:intergenic |
TGAAATTTCCTCTTTGCTGA+TGG | 0.429325 | 5.4:+50650130 | None:intergenic |
GTTTGTATATTAGGTTTGTT+CGG | 0.430394 | 5.4:-50653397 | MS.gene050058:intron |
CTAAATACTTGCAGCTGTCC+TGG | 0.432436 | 5.4:+50643641 | None:intergenic |
AAGTAATTTACCTGCTGGTA+TGG | 0.451989 | 5.4:+50648221 | None:intergenic |
TTATACCCTATAGCCATTTG+CGG | 0.457864 | 5.4:-50641649 | MS.gene050058:intron |
GAACAGTTTGTCCATCATGC+AGG | 0.459284 | 5.4:-50648570 | MS.gene050058:CDS |
GGACAGCTGCAAGTATTTAG+AGG | 0.469086 | 5.4:-50643638 | MS.gene050058:CDS |
TGCATTACTTGTAAAGGATC+TGG | 0.469733 | 5.4:-50648398 | MS.gene050058:CDS |
GCATGATGGACAAACTGTTC+GGG | 0.472832 | 5.4:+50648573 | None:intergenic |
TGTACAAAATACCCATGCTT+TGG | 0.488581 | 5.4:+50643505 | None:intergenic |
TGTCCTGGTTGAACACCCTT+AGG | 0.491247 | 5.4:+50643656 | None:intergenic |
CATTCCCACCTTCTGGCACA+TGG | 0.494951 | 5.4:+50647819 | None:intergenic |
CGACCGGCGCCCCTGCATGA+TGG | 0.501134 | 5.4:+50648559 | None:intergenic |
CTGTATCAAACCAGATGGAC+GGG | 0.502009 | 5.4:-50648614 | MS.gene050058:intron |
ATGATCTACCTTGTCATACT+CGG | 0.503787 | 5.4:+50649929 | None:intergenic |
GGTGGGAATGCTGCTGGAAG+TGG | 0.504234 | 5.4:-50647806 | MS.gene050058:CDS |
GAGGATCTGGGGTTATTGAA+GGG | 0.505403 | 5.4:-50648263 | MS.gene050058:CDS |
ATGCCTTCTTTATCTCATCC+TGG | 0.506095 | 5.4:+50652989 | None:intergenic |
TAAACATAACGAAATCTGAA+TGG | 0.515429 | 5.4:+50653328 | None:intergenic |
TCAACATGCATTACTTGTAA+AGG | 0.518023 | 5.4:-50648404 | MS.gene050058:CDS |
TATTCTTATTTGCATCTGGA+TGG | 0.518251 | 5.4:+50650155 | None:intergenic |
TATGGTTCCTCAGATACCTA+AGG | 0.520368 | 5.4:-50643672 | MS.gene050058:intron |
CTCGTTGAAATAGGTGGATG+AGG | 0.521698 | 5.4:-50646585 | MS.gene050058:intron |
GGTTATTGAAGGGATTAAAG+AGG | 0.530183 | 5.4:-50648253 | MS.gene050058:CDS |
TCAGTTCTCTTCAAATATAG+AGG | 0.530674 | 5.4:-50649579 | MS.gene050058:intron |
TTACTCACCACAATTATCAC+AGG | 0.531813 | 5.4:+50649395 | None:intergenic |
TGTCCATCATGCAGGGGCGC+CGG | 0.536077 | 5.4:-50648562 | MS.gene050058:CDS |
CCAGAAGGTGGGAATGCTGC+TGG | 0.543160 | 5.4:-50647812 | MS.gene050058:CDS |
TGTTGCTGAAAATGCTAGCC+AGG | 0.546404 | 5.4:-50653007 | MS.gene050058:CDS |
AACAGTTTGTCCATCATGCA+GGG | 0.547169 | 5.4:-50648569 | MS.gene050058:CDS |
ACAATCCATGTGCCAGAAGG+TGG | 0.547870 | 5.4:-50647824 | MS.gene050058:CDS |
GCTGGAAGTGGTGGTCGACA+TGG | 0.548526 | 5.4:-50647794 | MS.gene050058:CDS |
ACTTGAAGAATTTGCAAAGG+AGG | 0.552069 | 5.4:-50641909 | MS.gene050058:CDS |
TGCAAAGGAGGAAATAAAGG+AGG | 0.553510 | 5.4:-50641897 | MS.gene050058:CDS |
TTCCAATGCACTTACTCGAC+CGG | 0.555054 | 5.4:+50648543 | None:intergenic |
CTGCAAGTATTTAGAGGCAA+AGG | 0.556105 | 5.4:-50643632 | MS.gene050058:intron |
ATCAGGGAAGATGCAAGTAA+AGG | 0.559877 | 5.4:-50644621 | MS.gene050058:intron |
AGATGTAAGAGAAGCTTATG+AGG | 0.560366 | 5.4:-50650107 | MS.gene050058:intron |
TATTCTTGGTGGCAAAGTTG+AGG | 0.566271 | 5.4:-50644654 | MS.gene050058:CDS |
TGATGCAGAAAGATTTAGAA+AGG | 0.567593 | 5.4:-50649748 | MS.gene050058:CDS |
AAGGTTCACGTTGTTATCGC+CGG | 0.572063 | 5.4:-50653686 | MS.gene050058:intron |
GGGAATGCTGCTGGAAGTGG+TGG | 0.574072 | 5.4:-50647803 | MS.gene050058:CDS |
CTTACTTTCTCAGAAGCCGC+GGG | 0.579509 | 5.4:-50649456 | MS.gene050058:CDS |
GTTAAAGTTACCATACCAGC+AGG | 0.579997 | 5.4:-50648231 | MS.gene050058:intron |
ATCACTTTCCTCGAATGAGA+AGG | 0.581262 | 5.4:-50653705 | None:intergenic |
GGAAATAGTTCAATATCTGA+AGG | 0.581568 | 5.4:-50641875 | MS.gene050058:CDS |
TTGAGGTGCCTACTTTATCA+GGG | 0.581583 | 5.4:-50644637 | MS.gene050058:CDS |
CAATTTAAGATGCATGCTCA+CGG | 0.587454 | 5.4:-50649804 | MS.gene050058:intron |
ATGCAGGACTGCCAAAGCAT+GGG | 0.587800 | 5.4:-50643516 | MS.gene050058:intron |
ATCTAATATTAGCTTTACAC+AGG | 0.589607 | 5.4:-50646522 | MS.gene050058:intron |
AGAATAATCCATCAGCAAAG+AGG | 0.589754 | 5.4:-50650138 | MS.gene050058:CDS |
ATACCTAAGGGTGTTCAACC+AGG | 0.589906 | 5.4:-50643659 | MS.gene050058:CDS |
CTGGAAGTGGTGGTCGACAT+GGG | 0.590011 | 5.4:-50647793 | MS.gene050058:CDS |
GCAAAGGAGGAAATAAAGGA+GGG | 0.593191 | 5.4:-50641896 | MS.gene050058:CDS |
ATGGTTCCTCAGATACCTAA+GGG | 0.596859 | 5.4:-50643671 | MS.gene050058:intron |
TGCATCTTCCCTGATAAAGT+AGG | 0.608731 | 5.4:+50644629 | None:intergenic |
GCTGTATCAAACCAGATGGA+CGG | 0.608981 | 5.4:-50648615 | MS.gene050058:intron |
ACTTACTTTCTCAGAAGCCG+CGG | 0.610022 | 5.4:-50649457 | MS.gene050058:CDS |
TATACTTGAAGAATTTGCAA+AGG | 0.610199 | 5.4:-50641912 | MS.gene050058:CDS |
TTTGTCTTGTGGAGGATCTG+GGG | 0.611758 | 5.4:-50648274 | MS.gene050058:CDS |
GATGCAGGACTGCCAAAGCA+TGG | 0.619189 | 5.4:-50643517 | MS.gene050058:intron |
CAATCCATGTGCCAGAAGGT+GGG | 0.625311 | 5.4:-50647823 | MS.gene050058:CDS |
TAGCCAGGATGAGATAAAGA+AGG | 0.625702 | 5.4:-50652992 | MS.gene050058:CDS |
GATAAAGAAGGCATTTCACT+CGG | 0.628750 | 5.4:-50652980 | MS.gene050058:intron |
GATACAATCCATGTGCCAGA+AGG | 0.629876 | 5.4:-50647827 | MS.gene050058:CDS |
TGCATGTTGATGTAAATGGC+GGG | 0.630577 | 5.4:+50648417 | None:intergenic |
TATGGAGGACCTTAATAATG+CGG | 0.634096 | 5.4:+50648375 | None:intergenic |
GAATCAATTTCATGAACGAG+AGG | 0.643272 | 5.4:+50653546 | None:intergenic |
ACTTTCTCAGAAGCCGCGGG+AGG | 0.647944 | 5.4:-50649453 | MS.gene050058:CDS |
TACTCACCACAATTATCACA+GGG | 0.652525 | 5.4:+50649396 | None:intergenic |
CATACTTCGTGAAATCAACA+AGG | 0.654921 | 5.4:+50653494 | None:intergenic |
ACAGTTTGTCCATCATGCAG+GGG | 0.668535 | 5.4:-50648568 | MS.gene050058:CDS |
ATTTCATCAAGTATTCTCTG+AGG | 0.670357 | 5.4:-50649700 | MS.gene050058:intron |
TGTATCAAACCAGATGGACG+GGG | 0.678170 | 5.4:-50648613 | MS.gene050058:intron |
AAAGAGGGCCGAGTATGACA+AGG | 0.689679 | 5.4:-50649937 | MS.gene050058:intron |
GCAGTTCCCTGTGATAATTG+TGG | 0.707059 | 5.4:-50649402 | MS.gene050058:intron |
GGATGGTGCAGATATCTATG+TGG | 0.707658 | 5.4:-50646546 | MS.gene050058:CDS |
ATGCATGTTGATGTAAATGG+CGG | 0.714930 | 5.4:+50648416 | None:intergenic |
CCTACGTGGGAAACTTTACA+CGG | 0.717093 | 5.4:+50643458 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 50641646 | 50653713 | 50641646 | ID=MS.gene050058 |
chr5.4 | mRNA | 50641646 | 50653713 | 50641646 | ID=MS.gene050058.t1;Parent=MS.gene050058 |
chr5.4 | exon | 50653687 | 50653713 | 50653687 | ID=MS.gene050058.t1.exon1;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50653687 | 50653713 | 50653687 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50653499 | 50653604 | 50653499 | ID=MS.gene050058.t1.exon2;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50653499 | 50653604 | 50653499 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50653320 | 50653406 | 50653320 | ID=MS.gene050058.t1.exon3;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50653320 | 50653406 | 50653320 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50652981 | 50653075 | 50652981 | ID=MS.gene050058.t1.exon4;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50652981 | 50653075 | 50652981 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50650108 | 50650191 | 50650108 | ID=MS.gene050058.t1.exon5;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50650108 | 50650191 | 50650108 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50649938 | 50649976 | 50649938 | ID=MS.gene050058.t1.exon6;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50649938 | 50649976 | 50649938 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50649701 | 50649817 | 50649701 | ID=MS.gene050058.t1.exon7;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50649701 | 50649817 | 50649701 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50649580 | 50649621 | 50649580 | ID=MS.gene050058.t1.exon8;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50649580 | 50649621 | 50649580 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50649403 | 50649490 | 50649403 | ID=MS.gene050058.t1.exon9;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50649403 | 50649490 | 50649403 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50648558 | 50648622 | 50648558 | ID=MS.gene050058.t1.exon10;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50648558 | 50648622 | 50648558 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50648385 | 50648447 | 50648385 | ID=MS.gene050058.t1.exon11;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50648385 | 50648447 | 50648385 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50648232 | 50648304 | 50648232 | ID=MS.gene050058.t1.exon12;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50648232 | 50648304 | 50648232 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50647772 | 50647863 | 50647772 | ID=MS.gene050058.t1.exon13;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50647772 | 50647863 | 50647772 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50646523 | 50646594 | 50646523 | ID=MS.gene050058.t1.exon14;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50646523 | 50646594 | 50646523 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50644622 | 50644678 | 50644622 | ID=MS.gene050058.t1.exon15;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50644622 | 50644678 | 50644622 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50643633 | 50643681 | 50643633 | ID=MS.gene050058.t1.exon16;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50643633 | 50643681 | 50643633 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50643463 | 50643532 | 50643463 | ID=MS.gene050058.t1.exon17;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50643463 | 50643532 | 50643463 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50641869 | 50641958 | 50641869 | ID=MS.gene050058.t1.exon18;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50641869 | 50641958 | 50641869 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
chr5.4 | exon | 50641646 | 50641658 | 50641646 | ID=MS.gene050058.t1.exon19;Parent=MS.gene050058.t1 |
chr5.4 | CDS | 50641646 | 50641658 | 50641646 | ID=cds.MS.gene050058.t1;Parent=MS.gene050058.t1 |
Gene Sequence |
Protein sequence |