Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34313.t1 | XP_013454490.1 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 1.10E-235 | 825.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34313.t1 | A0A072UGG4 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 8.3e-236 | 825.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049697 | MS.gene34313 | 0.810157 | 1.33E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene34313 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene050544 | MS.gene34313 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene34313 | 0.81464 | 1.39E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene34313 | 0.815539 | 8.78E-52 | -1.69E-46 |
| MS.gene052383 | MS.gene34313 | 0.804646 | 1.95E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene34313 | 0.822345 | 2.49E-53 | -1.69E-46 |
| MS.gene054551 | MS.gene34313 | 0.825099 | 5.64E-54 | -1.69E-46 |
| MS.gene054593 | MS.gene34313 | 0.800782 | 1.23E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene34313 | 0.822047 | 2.92E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene34313 | 0.835817 | 1.35E-56 | -1.69E-46 |
| MS.gene056041 | MS.gene34313 | 0.814124 | 1.81E-51 | -1.69E-46 |
| MS.gene056042 | MS.gene34313 | 0.802071 | 6.68E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene34313 | 0.808985 | 2.37E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene34313 | 0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene34313 | 0.809215 | 2.11E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34313.t1 | MTR_4g005350 | 97.412 | 425 | 11 | 0 | 1 | 425 | 1 | 425 | 0.0 | 853 |
| MS.gene34313.t1 | MTR_8g104270 | 39.571 | 326 | 163 | 13 | 115 | 424 | 254 | 561 | 2.38e-47 | 171 |
| MS.gene34313.t1 | MTR_6g084440 | 40.379 | 317 | 166 | 10 | 115 | 424 | 300 | 600 | 1.28e-46 | 169 |
| MS.gene34313.t1 | MTR_6g084440 | 40.439 | 319 | 165 | 11 | 115 | 424 | 300 | 602 | 6.57e-46 | 167 |
| MS.gene34313.t1 | MTR_7g010160 | 34.535 | 333 | 178 | 12 | 122 | 424 | 422 | 744 | 2.57e-39 | 150 |
| MS.gene34313.t1 | MTR_5g040600 | 31.231 | 333 | 181 | 11 | 121 | 425 | 597 | 909 | 2.31e-29 | 121 |
| MS.gene34313.t1 | MTR_8g467380 | 31.667 | 240 | 140 | 6 | 194 | 410 | 587 | 825 | 3.56e-20 | 93.6 |
| MS.gene34313.t1 | MTR_8g467390 | 42.045 | 88 | 43 | 2 | 194 | 277 | 206 | 289 | 1.42e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34313.t1 | AT3G20260 | 59.729 | 442 | 156 | 10 | 1 | 425 | 1 | 437 | 1.66e-156 | 449 |
| MS.gene34313.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 1.60e-46 | 169 |
| MS.gene34313.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 1.60e-46 | 169 |
| MS.gene34313.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34313.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34313.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34313.t1 | AT5G39785 | 30.931 | 333 | 197 | 6 | 125 | 425 | 276 | 607 | 1.46e-35 | 139 |
| MS.gene34313.t1 | AT5G39785 | 29.412 | 357 | 195 | 8 | 125 | 425 | 276 | 631 | 4.05e-34 | 134 |
| MS.gene34313.t1 | AT1G69610 | 28.462 | 390 | 236 | 11 | 60 | 425 | 266 | 636 | 1.48e-30 | 124 |
| MS.gene34313.t1 | AT1G69610 | 28.462 | 390 | 236 | 11 | 60 | 425 | 267 | 637 | 1.56e-30 | 124 |
| MS.gene34313.t1 | AT1G69610 | 28.499 | 393 | 232 | 11 | 60 | 425 | 222 | 592 | 1.61e-30 | 124 |
| MS.gene34313.t1 | AT3G01175 | 27.536 | 345 | 182 | 11 | 119 | 424 | 260 | 575 | 9.07e-20 | 92.0 |
Find 100 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAACTTCTTCATGCTTT+TGG | 0.162837 | 4.3:-89177429 | None:intergenic |
| GAAAATTCACCTCGTATATT+TGG | 0.166047 | 4.3:-89176435 | None:intergenic |
| CTAGAGCGAGCATAAATTTC+AGG | 0.248869 | 4.3:-89176384 | None:intergenic |
| GTGCAGCATCTTAGTGAAAT+TGG | 0.249862 | 4.3:+89175503 | MS.gene34313:CDS |
| CAAAGCCTCGCCACCATTGC+TGG | 0.272542 | 4.3:-89175427 | None:intergenic |
| GCAGGAGTTTCAACAATTTC+AGG | 0.274624 | 4.3:+89176311 | MS.gene34313:CDS |
| AACTTGATTTATCGAATAAT+AGG | 0.282412 | 4.3:+89177551 | MS.gene34313:CDS |
| CACTTTGCCTAAACTACTTC+AGG | 0.289828 | 4.3:+89176410 | MS.gene34313:CDS |
| TTCTTGCTCCAGATCTTATC+AGG | 0.311925 | 4.3:+89176658 | MS.gene34313:CDS |
| TGACTAGAGAACAGCTGTTT+TGG | 0.334597 | 4.3:+89177509 | MS.gene34313:CDS |
| TCGAGACATGAATCTTCTTC+AGG | 0.336685 | 4.3:-89175335 | None:intergenic |
| AGCTTCTTTGATGTAGATCT+TGG | 0.341971 | 4.3:-89176069 | None:intergenic |
| TCCACATCCCTCCATTCATT+TGG | 0.357529 | 4.3:-89175395 | None:intergenic |
| GGCTTTGATTCCTCAGGCTC+AGG | 0.371626 | 4.3:-89175173 | None:intergenic |
| TCAATTATCCTGATAAGATC+TGG | 0.392578 | 4.3:-89176666 | None:intergenic |
| TCAAGCGTTATCAACCTGTT+TGG | 0.398641 | 4.3:+89176738 | MS.gene34313:CDS |
| GCTGATTCTGATTTCCAAAC+AGG | 0.399869 | 4.3:-89176752 | None:intergenic |
| GAGCCTCCTCTTTACCTCAT+TGG | 0.400140 | 4.3:-89175276 | None:intergenic |
| GAAGAGGAAGAGGGAGAGAC+AGG | 0.409837 | 4.3:+89175371 | MS.gene34313:CDS |
| TTTGGAACCTGAAGTAGTTT+AGG | 0.411769 | 4.3:-89176417 | None:intergenic |
| GCCTGAAAATATTCCCTACT+TGG | 0.415181 | 4.3:+89176164 | MS.gene34313:CDS |
| CCTTTCGTTTATTCCTGAAA+AGG | 0.417058 | 4.3:+89176703 | MS.gene34313:CDS |
| AGGGGAGGATGAAGAGGAAG+AGG | 0.437173 | 4.3:+89175361 | MS.gene34313:CDS |
| GGTCGAGGGCCCTGCTCAAA+AGG | 0.439174 | 4.3:-89176363 | None:intergenic |
| TTGACGCGAAAATCTTATCA+AGG | 0.439867 | 4.3:+89177467 | MS.gene34313:CDS |
| CTGCGCACTACGGCTGTAAC+AGG | 0.442848 | 4.3:-89176292 | None:intergenic |
| CTTTCGTTTATTCCTGAAAA+GGG | 0.442892 | 4.3:+89176704 | MS.gene34313:CDS |
| GTGTTGGGCTTTGATTCCTC+AGG | 0.443162 | 4.3:-89175179 | None:intergenic |
| ATATGAGTTATAAGATATCT+TGG | 0.448492 | 4.3:+89176253 | MS.gene34313:CDS |
| CATCTTAGTGAAATTGGAAA+AGG | 0.480151 | 4.3:+89175509 | MS.gene34313:CDS |
| TCCCTACTTGGATATTGAAA+CGG | 0.481023 | 4.3:+89176176 | MS.gene34313:CDS |
| AGGAGCTAAGGAAGAAGGGT+TGG | 0.486945 | 4.3:+89177389 | MS.gene34313:CDS |
| GCTCGCCACTCCTCTACAAC+AGG | 0.491100 | 4.3:+89176773 | MS.gene34313:CDS |
| GGGGAGGATGAAGAGGAAGA+GGG | 0.491674 | 4.3:+89175362 | MS.gene34313:CDS |
| GATTAGCAAGGGAATAGAAT+GGG | 0.491816 | 4.3:-89177592 | None:intergenic |
| GAAGAAGTTCAACTATTGCT+TGG | 0.493712 | 4.3:+89177439 | MS.gene34313:CDS |
| AGAAGCTGGCATCTCCCCTT+CGG | 0.493948 | 4.3:+89176085 | MS.gene34313:CDS |
| TTATTACCAATGAGGTAAAG+AGG | 0.499834 | 4.3:+89175270 | MS.gene34313:CDS |
| CGAGCATAAATTTCAGGTCG+AGG | 0.501283 | 4.3:-89176378 | None:intergenic |
| AGATGTTCAGTCTCATCATC+AGG | 0.502631 | 4.3:-89176135 | None:intergenic |
| TGATCAGGACCACCAGTGTT+GGG | 0.502702 | 4.3:-89175194 | None:intergenic |
| GAGAGACAGGACCAAATGAA+TGG | 0.508991 | 4.3:+89175384 | MS.gene34313:CDS |
| TTTGATGTAGATCTTGGAGA+TGG | 0.515789 | 4.3:-89176063 | None:intergenic |
| CTGAAATTTATGCTCGCTCT+AGG | 0.518886 | 4.3:+89176385 | MS.gene34313:CDS |
| TCAGGAATAAACGAAAGGTA+AGG | 0.521078 | 4.3:-89176698 | None:intergenic |
| TAGGTCAAATATGCTTGACT+TGG | 0.527289 | 4.3:+89176205 | MS.gene34313:CDS |
| ACTGAAGGAGCTAAGGAAGA+AGG | 0.531349 | 4.3:+89177384 | MS.gene34313:CDS |
| GAAGATTCATGTCTCGAGGA+AGG | 0.531829 | 4.3:+89175341 | MS.gene34313:CDS |
| TATCGAATAATAGGTTAGAG+AGG | 0.533149 | 4.3:+89177560 | MS.gene34313:CDS |
| AGGCAGAAGGCCAGCAATGG+TGG | 0.534428 | 4.3:+89175417 | MS.gene34313:CDS |
| CGAGGAAGGGGAGGATGAAG+AGG | 0.537283 | 4.3:+89175355 | MS.gene34313:CDS |
| TGATTAGCAAGGGAATAGAA+TGG | 0.538025 | 4.3:-89177593 | None:intergenic |
| AGATTCATGTCTCGAGGAAG+GGG | 0.539571 | 4.3:+89175343 | MS.gene34313:CDS |
| CTAAAGACTGTGATTAGCAA+GGG | 0.541390 | 4.3:-89177603 | None:intergenic |
| AAGATCTACATCAAAGAAGC+TGG | 0.541693 | 4.3:+89176071 | MS.gene34313:CDS |
| TTTAGGAAATCTCAGAAAGC+AGG | 0.542506 | 4.3:+89175119 | MS.gene34313:CDS |
| GACAGGACCAAATGAATGGA+GGG | 0.543843 | 4.3:+89175388 | MS.gene34313:CDS |
| GATATTGAAACGGCATATGT+AGG | 0.544289 | 4.3:+89176186 | MS.gene34313:CDS |
| CTGATCAGGACCACCAGTGT+TGG | 0.545402 | 4.3:-89175195 | None:intergenic |
| AAAGAATGTTATTCTTTGAT+CGG | 0.546997 | 4.3:+89175474 | MS.gene34313:CDS |
| AAGATTCATGTCTCGAGGAA+GGG | 0.547261 | 4.3:+89175342 | MS.gene34313:CDS |
| TGCCGTTTCAATATCCAAGT+AGG | 0.551085 | 4.3:-89176178 | None:intergenic |
| GTAGACTGAACCTGTTGTAG+AGG | 0.552512 | 4.3:-89176783 | None:intergenic |
| TGACGCGAAAATCTTATCAA+GGG | 0.554727 | 4.3:+89177468 | MS.gene34313:CDS |
| CAAGGGTTCTAAGAATGACT+AGG | 0.556783 | 4.3:+89177485 | MS.gene34313:CDS |
| AATTTCAGGTTCTATTGCAA+AGG | 0.557900 | 4.3:+89176325 | MS.gene34313:CDS |
| ACCAAATGAATGGAGGGATG+TGG | 0.560503 | 4.3:+89175394 | MS.gene34313:CDS |
| GCCGTTTCAATATCCAAGTA+GGG | 0.561156 | 4.3:-89176177 | None:intergenic |
| CGGTGAAACTGAAGGAGCTA+AGG | 0.567285 | 4.3:+89177377 | MS.gene34313:CDS |
| CTGTTACAGCCGTAGTGCGC+AGG | 0.568099 | 4.3:+89176293 | MS.gene34313:CDS |
| TTTCAAGGAAAGACACCGAA+GGG | 0.568486 | 4.3:-89176100 | None:intergenic |
| TGGAGGGATGTGGAGGCAGA+AGG | 0.569588 | 4.3:+89175404 | MS.gene34313:CDS |
| ATCGAATAATAGGTTAGAGA+GGG | 0.574093 | 4.3:+89177561 | MS.gene34313:CDS |
| ACTAAAGACTGTGATTAGCA+AGG | 0.583558 | 4.3:-89177604 | None:intergenic |
| CTGAAGGAGCTAAGGAAGAA+GGG | 0.591588 | 4.3:+89177385 | MS.gene34313:CDS |
| TCAAATATGCTTGACTTGGG+AGG | 0.593392 | 4.3:+89176209 | MS.gene34313:CDS |
| GAAGGCCAGCAATGGTGGCG+AGG | 0.595275 | 4.3:+89175422 | MS.gene34313:CDS |
| GAAATCTCAGAAAGCAGGTG+TGG | 0.595844 | 4.3:+89175124 | MS.gene34313:CDS |
| GTTGAAACTCCTGCGCACTA+CGG | 0.598745 | 4.3:-89176302 | None:intergenic |
| GCAGAAAGCGGTGAAACTGA+AGG | 0.602503 | 4.3:+89177369 | MS.gene34313:intron |
| CAAGGGAATAGAATGGGGCA+TGG | 0.602619 | 4.3:-89177586 | None:intergenic |
| CGATTCTTGTGCTGATGCTG+AGG | 0.602958 | 4.3:+89175235 | MS.gene34313:CDS |
| CAAGGCAGTGCCTGAGCCTG+AGG | 0.607834 | 4.3:+89175163 | MS.gene34313:CDS |
| TGAGGTAAAGAGGAGGCTCA+AGG | 0.611185 | 4.3:+89175280 | MS.gene34313:CDS |
| TGGAGGCAGAAGGCCAGCAA+TGG | 0.611341 | 4.3:+89175414 | MS.gene34313:CDS |
| GAGGAATCAAAGCCCAACAC+TGG | 0.613144 | 4.3:+89175182 | MS.gene34313:CDS |
| AGGTCAAATATGCTTGACTT+GGG | 0.614670 | 4.3:+89176206 | MS.gene34313:CDS |
| GAGCATAAATTTCAGGTCGA+GGG | 0.615669 | 4.3:-89176377 | None:intergenic |
| AAATGAATGGAGGGATGTGG+AGG | 0.617932 | 4.3:+89175397 | MS.gene34313:CDS |
| AGACAGGACCAAATGAATGG+AGG | 0.620870 | 4.3:+89175387 | MS.gene34313:CDS |
| TTCATGTCTCGAGGAAGGGG+AGG | 0.621507 | 4.3:+89175346 | MS.gene34313:CDS |
| GGTTCAGTCTACTCTTGAGA+AGG | 0.623341 | 4.3:+89176794 | MS.gene34313:CDS |
| CTGAACCTGTTGTAGAGGAG+TGG | 0.623679 | 4.3:-89176778 | None:intergenic |
| GAATCAAAGCCCAACACTGG+TGG | 0.626423 | 4.3:+89175185 | MS.gene34313:CDS |
| TGAAGAAGATTCATGTCTCG+AGG | 0.629329 | 4.3:+89175337 | MS.gene34313:CDS |
| GCACTACGGCTGTAACAGGT+AGG | 0.666438 | 4.3:-89176288 | None:intergenic |
| ATTAGCAAGGGAATAGAATG+GGG | 0.668816 | 4.3:-89177591 | None:intergenic |
| TTCAAGGAAAGACACCGAAG+GGG | 0.675812 | 4.3:-89176099 | None:intergenic |
| CTTCAGGTTCCAAATATACG+AGG | 0.690819 | 4.3:+89176426 | MS.gene34313:CDS |
| TTACCAATGAGGTAAAGAGG+AGG | 0.699801 | 4.3:+89175273 | MS.gene34313:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTATAAAAGAAATAT+TGG | + | chr4.3:89176513-89176532 | MS.gene34313:intron | 10.0% |
| !!! | TTTTGAAGATTAAAAAATTT+AGG | + | chr4.3:89175102-89175121 | MS.gene34313:CDS | 10.0% |
| !! | ATAATATAAAATTCCAAAGT+TGG | - | chr4.3:89176846-89176865 | None:intergenic | 15.0% |
| !! | TCAATTTATTAATAACTTTG+AGG | + | chr4.3:89175760-89175779 | MS.gene34313:intron | 15.0% |
| !! | TTTATCAAATGTGTTATATT+TGG | + | chr4.3:89175894-89175913 | MS.gene34313:intron | 15.0% |
| !! | AAAATCAAACTCTAATTGAT+AGG | - | chr4.3:89175646-89175665 | None:intergenic | 20.0% |
| !! | AAAGAATGTTATTCTTTGAT+CGG | + | chr4.3:89175474-89175493 | MS.gene34313:CDS | 20.0% |
| !! | AACTTGATTTATCGAATAAT+AGG | + | chr4.3:89177551-89177570 | MS.gene34313:CDS | 20.0% |
| !! | AATTAAAATCAGGATTATGT+TGG | - | chr4.3:89175816-89175835 | None:intergenic | 20.0% |
| !! | ACACTTAAAAGATCTAAATA+TGG | - | chr4.3:89175615-89175634 | None:intergenic | 20.0% |
| !! | ACTTAAAAGATCTAAATATG+GGG | - | chr4.3:89175613-89175632 | None:intergenic | 20.0% |
| !! | AGCAAATATATGTTAACTAT+TGG | + | chr4.3:89177050-89177069 | MS.gene34313:intron | 20.0% |
| !! | ATATGAGTTATAAGATATCT+TGG | + | chr4.3:89176253-89176272 | MS.gene34313:CDS | 20.0% |
| !! | ATTATGAGATTTGATAAATG+TGG | - | chr4.3:89176000-89176019 | None:intergenic | 20.0% |
| !! | CACTTAAAAGATCTAAATAT+GGG | - | chr4.3:89175614-89175633 | None:intergenic | 20.0% |
| !! | TAATAAATTGAAATGAATCC+AGG | - | chr4.3:89175751-89175770 | None:intergenic | 20.0% |
| !!! | AACATAATCCTGATTTTAAT+TGG | + | chr4.3:89175815-89175834 | MS.gene34313:intron | 20.0% |
| !!! | CTTTTATACTAAATAACTTC+AGG | - | chr4.3:89176507-89176526 | None:intergenic | 20.0% |
| !!! | TGCTATATGATTAACTTTTA+AGG | + | chr4.3:89176960-89176979 | MS.gene34313:intron | 20.0% |
| !!! | TTATTAATAACTTTGAGGAT+AGG | + | chr4.3:89175765-89175784 | MS.gene34313:intron | 20.0% |
| ! | AACAACAGAAAAGTAAATTC+TGG | - | chr4.3:89177246-89177265 | None:intergenic | 25.0% |
| ! | ACTGACATTATATTCAGATT+AGG | - | chr4.3:89175875-89175894 | None:intergenic | 25.0% |
| ! | CATATTAAAGAAGAACCATT+TGG | - | chr4.3:89176992-89177011 | None:intergenic | 25.0% |
| ! | CTTTCCTTGAAAAAATTTGA+AGG | + | chr4.3:89176111-89176130 | MS.gene34313:CDS | 25.0% |
| ! | TAAGTGTTTAAGCTAATGAA+TGG | + | chr4.3:89176590-89176609 | MS.gene34313:intron | 25.0% |
| ! | TGCATAAAACTTTAGATCAT+GGG | - | chr4.3:89177197-89177216 | None:intergenic | 25.0% |
| ! | TTTCATTTAAATGCAGAAAG+CGG | + | chr4.3:89177357-89177376 | MS.gene34313:intron | 25.0% |
| !! | AATTTTCTGTAAACTACTCT+AGG | + | chr4.3:89176451-89176470 | MS.gene34313:intron | 25.0% |
| !! | ATTGAGAAGAAACAGTTTTA+TGG | + | chr4.3:89175304-89175323 | MS.gene34313:CDS | 25.0% |
| !! | TAACTATTGGTTATACTTTG+AGG | + | chr4.3:89177063-89177082 | MS.gene34313:intron | 25.0% |
| !!! | CTGATTTTAATTGGAGTTAA+GGG | + | chr4.3:89175824-89175843 | MS.gene34313:intron | 25.0% |
| !!! | TGTTTTGACGAAATAGAATT+AGG | + | chr4.3:89177147-89177166 | MS.gene34313:intron | 25.0% |
| ATCGAATAATAGGTTAGAGA+GGG | + | chr4.3:89177561-89177580 | MS.gene34313:CDS | 30.0% | |
| CATCTTAGTGAAATTGGAAA+AGG | + | chr4.3:89175509-89175528 | MS.gene34313:CDS | 30.0% | |
| CCTTAACTCCAATTAAAATC+AGG | - | chr4.3:89175826-89175845 | None:intergenic | 30.0% | |
| CTTTAATATGCTTGTTCCAA+TGG | + | chr4.3:89177002-89177021 | MS.gene34313:intron | 30.0% | |
| CTTTCGTTTATTCCTGAAAA+GGG | + | chr4.3:89176704-89176723 | MS.gene34313:CDS | 30.0% | |
| GAAAATTCACCTCGTATATT+TGG | - | chr4.3:89176438-89176457 | None:intergenic | 30.0% | |
| GTGCATAAAACTTTAGATCA+TGG | - | chr4.3:89177198-89177217 | None:intergenic | 30.0% | |
| TATCGAATAATAGGTTAGAG+AGG | + | chr4.3:89177560-89177579 | MS.gene34313:CDS | 30.0% | |
| TCAATTATCCTGATAAGATC+TGG | - | chr4.3:89176669-89176688 | None:intergenic | 30.0% | |
| TCTGTTGTTAAAGATGAAGT+TGG | + | chr4.3:89177257-89177276 | MS.gene34313:intron | 30.0% | |
| TTATTACCAATGAGGTAAAG+AGG | + | chr4.3:89175270-89175289 | MS.gene34313:CDS | 30.0% | |
| ! | ATAAGATTTTCGCGTCAATA+AGG | - | chr4.3:89177465-89177484 | None:intergenic | 30.0% |
| ! | CGATGATTTTATTACCAATG+AGG | + | chr4.3:89175262-89175281 | MS.gene34313:CDS | 30.0% |
| ! | TAGTACATTTTGTTAGCAAC+AGG | - | chr4.3:89175960-89175979 | None:intergenic | 30.0% |
| ! | TTAAGCTAATGAATGGATTC+AGG | + | chr4.3:89176597-89176616 | MS.gene34313:intron | 30.0% |
| ! | TTGAACTTCTTCATGCTTTT+GGG | - | chr4.3:89177431-89177450 | None:intergenic | 30.0% |
| !! | AATTTCAGGTTCTATTGCAA+AGG | + | chr4.3:89176325-89176344 | MS.gene34313:CDS | 30.0% |
| !! | ACAACAGAATTTGCTAAAGA+TGG | - | chr4.3:89177223-89177242 | None:intergenic | 30.0% |
| !!! | AGGTCCTTCAAATTTTTTCA+AGG | - | chr4.3:89176118-89176137 | None:intergenic | 30.0% |
| !!! | CCTGATTTTAATTGGAGTTA+AGG | + | chr4.3:89175823-89175842 | MS.gene34313:intron | 30.0% |
| !!! | CTTTTAAGGTTTGATCCAAA+TGG | + | chr4.3:89176974-89176993 | MS.gene34313:intron | 30.0% |
| !!! | TGCTTCTTTTTTAGGTGAAA+CGG | + | chr4.3:89175548-89175567 | MS.gene34313:intron | 30.0% |
| !!! | TTAGCTCTTGCTTCTTTTTT+AGG | + | chr4.3:89175540-89175559 | MS.gene34313:intron | 30.0% |
| AAGATCTACATCAAAGAAGC+TGG | + | chr4.3:89176071-89176090 | MS.gene34313:CDS | 35.0% | |
| AATAACTTCAGGAACATCCA+TGG | - | chr4.3:89176496-89176515 | None:intergenic | 35.0% | |
| AATCAGGATTATGTTGGTGT+TGG | - | chr4.3:89175810-89175829 | None:intergenic | 35.0% | |
| AATTCCAAAGTTGGATCACA+AGG | - | chr4.3:89176837-89176856 | None:intergenic | 35.0% | |
| AGCTTCTTTGATGTAGATCT+TGG | - | chr4.3:89176072-89176091 | None:intergenic | 35.0% | |
| AGGGTTGGAGAAAAAATTCT+TGG | + | chr4.3:89177404-89177423 | MS.gene34313:CDS | 35.0% | |
| AGGTCAAATATGCTTGACTT+GGG | + | chr4.3:89176206-89176225 | MS.gene34313:CDS | 35.0% | |
| ATAACTTCAGGAACATCCAT+GGG | - | chr4.3:89176495-89176514 | None:intergenic | 35.0% | |
| CCAATGGTTAAATGCTAATC+AGG | + | chr4.3:89177018-89177037 | MS.gene34313:intron | 35.0% | |
| CCTGATTAGCATTTAACCAT+TGG | - | chr4.3:89177021-89177040 | None:intergenic | 35.0% | |
| CCTTTCGTTTATTCCTGAAA+AGG | + | chr4.3:89176703-89176722 | MS.gene34313:CDS | 35.0% | |
| GAAGAAGTTCAACTATTGCT+TGG | + | chr4.3:89177439-89177458 | MS.gene34313:CDS | 35.0% | |
| GAGATTTGATAAATGTGGAC+AGG | - | chr4.3:89175995-89176014 | None:intergenic | 35.0% | |
| GAGTTGCATGATGCTTAAAT+GGG | + | chr4.3:89175698-89175717 | MS.gene34313:intron | 35.0% | |
| GATATTGAAACGGCATATGT+AGG | + | chr4.3:89176186-89176205 | MS.gene34313:CDS | 35.0% | |
| GATTAGGCATGTTCAAAATG+TGG | - | chr4.3:89175859-89175878 | None:intergenic | 35.0% | |
| TAGGTCAAATATGCTTGACT+TGG | + | chr4.3:89176205-89176224 | MS.gene34313:CDS | 35.0% | |
| TCAGGAATAAACGAAAGGTA+AGG | - | chr4.3:89176701-89176720 | None:intergenic | 35.0% | |
| TCCCTACTTGGATATTGAAA+CGG | + | chr4.3:89176176-89176195 | MS.gene34313:CDS | 35.0% | |
| TGAAACATATTCTCTGTGTC+AGG | + | chr4.3:89176021-89176040 | MS.gene34313:intron | 35.0% | |
| TGACGCGAAAATCTTATCAA+GGG | + | chr4.3:89177468-89177487 | MS.gene34313:CDS | 35.0% | |
| TGAGTTGCATGATGCTTAAA+TGG | + | chr4.3:89175697-89175716 | MS.gene34313:intron | 35.0% | |
| TGATTTAGTGCTTGTCTTCA+TGG | + | chr4.3:89177298-89177317 | MS.gene34313:intron | 35.0% | |
| TTGACGCGAAAATCTTATCA+AGG | + | chr4.3:89177467-89177486 | MS.gene34313:CDS | 35.0% | |
| TTTACCTTGTGATCCAACTT+TGG | + | chr4.3:89176830-89176849 | MS.gene34313:intron | 35.0% | |
| TTTAGGAAATCTCAGAAAGC+AGG | + | chr4.3:89175119-89175138 | MS.gene34313:CDS | 35.0% | |
| TTTGATGTAGATCTTGGAGA+TGG | - | chr4.3:89176066-89176085 | None:intergenic | 35.0% | |
| ! | ATCAGGATTATGTTGGTGTT+GGG | - | chr4.3:89175809-89175828 | None:intergenic | 35.0% |
| ! | GAAAATGAACCTTTTGAGCA+GGG | + | chr4.3:89176354-89176373 | MS.gene34313:CDS | 35.0% |
| ! | GGAAAAAGATTTGGTAGACA+AGG | + | chr4.3:89175145-89175164 | MS.gene34313:CDS | 35.0% |
| ! | GTTGAACTTCTTCATGCTTT+TGG | - | chr4.3:89177432-89177451 | None:intergenic | 35.0% |
| ! | TCCAAGTAGGGAATATTTTC+AGG | - | chr4.3:89176168-89176187 | None:intergenic | 35.0% |
| ! | TGAAAATGAACCTTTTGAGC+AGG | + | chr4.3:89176353-89176372 | MS.gene34313:CDS | 35.0% |
| ! | TGAACTTCTTCATGCTTTTG+GGG | - | chr4.3:89177430-89177449 | None:intergenic | 35.0% |
| ! | TTTGGAACCTGAAGTAGTTT+AGG | - | chr4.3:89176420-89176439 | None:intergenic | 35.0% |
| ! | TTTTCTGACTTACACTGATC+AGG | - | chr4.3:89175212-89175231 | None:intergenic | 35.0% |
| !! | ACTTTTTCTTGTCCCTTTTC+AGG | - | chr4.3:89176719-89176738 | None:intergenic | 35.0% |
| !! | CCTTTTCAGGAATAAACGAA+AGG | - | chr4.3:89176706-89176725 | None:intergenic | 35.0% |
| !!! | GCTTCTTTTTTAGGTGAAAC+GGG | + | chr4.3:89175549-89175568 | MS.gene34313:intron | 35.0% |
| AACTTTAGATCATGGGCAGT+AGG | - | chr4.3:89177190-89177209 | None:intergenic | 40.0% | |
| AAGATTCATGTCTCGAGGAA+GGG | + | chr4.3:89175342-89175361 | MS.gene34313:CDS | 40.0% | |
| AGATGTTCAGTCTCATCATC+AGG | - | chr4.3:89176138-89176157 | None:intergenic | 40.0% | |
| AGCAGGTGTGGAAAAAGATT+TGG | + | chr4.3:89175136-89175155 | MS.gene34313:CDS | 40.0% | |
| CACTTTGCCTAAACTACTTC+AGG | + | chr4.3:89176410-89176429 | MS.gene34313:CDS | 40.0% | |
| CTAGAGCGAGCATAAATTTC+AGG | - | chr4.3:89176387-89176406 | None:intergenic | 40.0% | |
| CTGAAATTTATGCTCGCTCT+AGG | + | chr4.3:89176385-89176404 | MS.gene34313:CDS | 40.0% | |
| GCAGGAGTTTCAACAATTTC+AGG | + | chr4.3:89176311-89176330 | MS.gene34313:CDS | 40.0% | |
| GCCGTTTCAATATCCAAGTA+GGG | - | chr4.3:89176180-89176199 | None:intergenic | 40.0% | |
| GCCTGAAAATATTCCCTACT+TGG | + | chr4.3:89176164-89176183 | MS.gene34313:CDS | 40.0% | |
| GTGCAGCATCTTAGTGAAAT+TGG | + | chr4.3:89175503-89175522 | MS.gene34313:CDS | 40.0% | |
| TAACTTCAGGAACATCCATG+GGG | - | chr4.3:89176494-89176513 | None:intergenic | 40.0% | |
| TCAAGCGTTATCAACCTGTT+TGG | + | chr4.3:89176738-89176757 | MS.gene34313:CDS | 40.0% | |
| TCGAGACATGAATCTTCTTC+AGG | - | chr4.3:89175338-89175357 | None:intergenic | 40.0% | |
| TGAAGAAGATTCATGTCTCG+AGG | + | chr4.3:89175337-89175356 | MS.gene34313:CDS | 40.0% | |
| TTACCAATGAGGTAAAGAGG+AGG | + | chr4.3:89175273-89175292 | MS.gene34313:CDS | 40.0% | |
| TTCTTGCTCCAGATCTTATC+AGG | + | chr4.3:89176658-89176677 | MS.gene34313:CDS | 40.0% | |
| TTTCAAGGAAAGACACCGAA+GGG | - | chr4.3:89176103-89176122 | None:intergenic | 40.0% | |
| ! | CTTCAGGTTCCAAATATACG+AGG | + | chr4.3:89176426-89176445 | MS.gene34313:CDS | 40.0% |
| ! | GAGCATAAATTTCAGGTCGA+GGG | - | chr4.3:89176380-89176399 | None:intergenic | 40.0% |
| ! | GCTGATTCTGATTTCCAAAC+AGG | - | chr4.3:89176755-89176774 | None:intergenic | 40.0% |
| ! | TGACTAGAGAACAGCTGTTT+TGG | + | chr4.3:89177509-89177528 | MS.gene34313:CDS | 40.0% |
| ! | TGCCGTTTCAATATCCAAGT+AGG | - | chr4.3:89176181-89176200 | None:intergenic | 40.0% |
| !! | CAAGGGTTCTAAGAATGACT+AGG | + | chr4.3:89177485-89177504 | MS.gene34313:CDS | 40.0% |
| !! | TCAAATATGCTTGACTTGGG+AGG | + | chr4.3:89176209-89176228 | MS.gene34313:CDS | 40.0% |
| !! | TCTGCTTTTAATCCAAGTGC+AGG | + | chr4.3:89177100-89177119 | MS.gene34313:intron | 40.0% |
| !! | TTTTCAAGGAAAGACACCGA+AGG | - | chr4.3:89176104-89176123 | None:intergenic | 40.0% |
| !!! | CTTTTTTAGGTGAAACGGGA+GGG | + | chr4.3:89175553-89175572 | MS.gene34313:intron | 40.0% |
| !!! | TCTTTTTTAGGTGAAACGGG+AGG | + | chr4.3:89175552-89175571 | MS.gene34313:intron | 40.0% |
| AAATGAATGGAGGGATGTGG+AGG | + | chr4.3:89175397-89175416 | MS.gene34313:CDS | 45.0% | |
| ACCAAATGAATGGAGGGATG+TGG | + | chr4.3:89175394-89175413 | MS.gene34313:CDS | 45.0% | |
| ACTGAAGGAGCTAAGGAAGA+AGG | + | chr4.3:89177384-89177403 | MS.gene34313:CDS | 45.0% | |
| AGACAGGACCAAATGAATGG+AGG | + | chr4.3:89175387-89175406 | MS.gene34313:CDS | 45.0% | |
| AGATTCATGTCTCGAGGAAG+GGG | + | chr4.3:89175343-89175362 | MS.gene34313:CDS | 45.0% | |
| CAAGTGCAGGACAGCTTATT+GGG | + | chr4.3:89177113-89177132 | MS.gene34313:intron | 45.0% | |
| CATCATGCAACTCATGTAGC+AGG | - | chr4.3:89175691-89175710 | None:intergenic | 45.0% | |
| CATGATGCTTAAATGGGTGC+TGG | + | chr4.3:89175704-89175723 | MS.gene34313:intron | 45.0% | |
| CTGAAGGAGCTAAGGAAGAA+GGG | + | chr4.3:89177385-89177404 | MS.gene34313:CDS | 45.0% | |
| GAAATCTCAGAAAGCAGGTG+TGG | + | chr4.3:89175124-89175143 | MS.gene34313:CDS | 45.0% | |
| GAAGATTCATGTCTCGAGGA+AGG | + | chr4.3:89175341-89175360 | MS.gene34313:CDS | 45.0% | |
| GACAGGACCAAATGAATGGA+GGG | + | chr4.3:89175388-89175407 | MS.gene34313:CDS | 45.0% | |
| GAGAGACAGGACCAAATGAA+TGG | + | chr4.3:89175384-89175403 | MS.gene34313:CDS | 45.0% | |
| GGTTCAGTCTACTCTTGAGA+AGG | + | chr4.3:89176794-89176813 | MS.gene34313:CDS | 45.0% | |
| GTAGACTGAACCTGTTGTAG+AGG | - | chr4.3:89176786-89176805 | None:intergenic | 45.0% | |
| TCCACATCCCTCCATTCATT+TGG | - | chr4.3:89175398-89175417 | None:intergenic | 45.0% | |
| TTCAAGGAAAGACACCGAAG+GGG | - | chr4.3:89176102-89176121 | None:intergenic | 45.0% | |
| ! | CGAGCATAAATTTCAGGTCG+AGG | - | chr4.3:89176381-89176400 | None:intergenic | 45.0% |
| ! | CTACTCTAGGAACCCATATG+TGG | + | chr4.3:89176464-89176483 | MS.gene34313:intron | 45.0% |
| ! | TTTGAAACTTGGATGCTGCC+TGG | + | chr4.3:89175730-89175749 | MS.gene34313:intron | 45.0% |
| !!! | GGTGCTGGCATTTTGAAACT+TGG | + | chr4.3:89175719-89175738 | MS.gene34313:intron | 45.0% |
| AGGAGCTAAGGAAGAAGGGT+TGG | + | chr4.3:89177389-89177408 | MS.gene34313:CDS | 50.0% | |
| CAAGGGAATAGAATGGGGCA+TGG | - | chr4.3:89177589-89177608 | None:intergenic | 50.0% | |
| CCAAGTGCAGGACAGCTTAT+TGG | + | chr4.3:89177112-89177131 | MS.gene34313:intron | 50.0% | |
| CCAATAAGCTGTCCTGCACT+TGG | - | chr4.3:89177115-89177134 | None:intergenic | 50.0% | |
| CGGTGAAACTGAAGGAGCTA+AGG | + | chr4.3:89177377-89177396 | MS.gene34313:CDS | 50.0% | |
| CTGAACCTGTTGTAGAGGAG+TGG | - | chr4.3:89176781-89176800 | None:intergenic | 50.0% | |
| GAATCAAAGCCCAACACTGG+TGG | + | chr4.3:89175185-89175204 | MS.gene34313:CDS | 50.0% | |
| GAGCCTCCTCTTTACCTCAT+TGG | - | chr4.3:89175279-89175298 | None:intergenic | 50.0% | |
| GAGGAATCAAAGCCCAACAC+TGG | + | chr4.3:89175182-89175201 | MS.gene34313:CDS | 50.0% | |
| GCAGAAAGCGGTGAAACTGA+AGG | + | chr4.3:89177369-89177388 | MS.gene34313:intron | 50.0% | |
| GTTGAAACTCCTGCGCACTA+CGG | - | chr4.3:89176305-89176324 | None:intergenic | 50.0% | |
| TGAGGTAAAGAGGAGGCTCA+AGG | + | chr4.3:89175280-89175299 | MS.gene34313:CDS | 50.0% | |
| TGATCAGGACCACCAGTGTT+GGG | - | chr4.3:89175197-89175216 | None:intergenic | 50.0% | |
| TGCAGGACAGCTTATTGGGA+GGG | + | chr4.3:89177117-89177136 | MS.gene34313:intron | 50.0% | |
| ! | CGATTCTTGTGCTGATGCTG+AGG | + | chr4.3:89175235-89175254 | MS.gene34313:CDS | 50.0% |
| ! | GTGTTGGGCTTTGATTCCTC+AGG | - | chr4.3:89175182-89175201 | None:intergenic | 50.0% |
| AGAAGCTGGCATCTCCCCTT+CGG | + | chr4.3:89176085-89176104 | MS.gene34313:CDS | 55.0% | |
| AGGGGAGGATGAAGAGGAAG+AGG | + | chr4.3:89175361-89175380 | MS.gene34313:CDS | 55.0% | |
| CAGGACAGCTTATTGGGAGG+GGG | + | chr4.3:89177119-89177138 | MS.gene34313:intron | 55.0% | |
| CTGATCAGGACCACCAGTGT+TGG | - | chr4.3:89175198-89175217 | None:intergenic | 55.0% | |
| GAAGAGGAAGAGGGAGAGAC+AGG | + | chr4.3:89175371-89175390 | MS.gene34313:CDS | 55.0% | |
| GCACTACGGCTGTAACAGGT+AGG | - | chr4.3:89176291-89176310 | None:intergenic | 55.0% | |
| GCAGGACAGCTTATTGGGAG+GGG | + | chr4.3:89177118-89177137 | MS.gene34313:intron | 55.0% | |
| GGGGAGGATGAAGAGGAAGA+GGG | + | chr4.3:89175362-89175381 | MS.gene34313:CDS | 55.0% | |
| GTGCAGGACAGCTTATTGGG+AGG | + | chr4.3:89177116-89177135 | MS.gene34313:intron | 55.0% | |
| TTCAGGAACATCCATGGGGC+AGG | - | chr4.3:89176490-89176509 | None:intergenic | 55.0% | |
| TTCATGTCTCGAGGAAGGGG+AGG | + | chr4.3:89175346-89175365 | MS.gene34313:CDS | 55.0% | |
| ! | GGCTTTGATTCCTCAGGCTC+AGG | - | chr4.3:89175176-89175195 | None:intergenic | 55.0% |
| AGGCAGAAGGCCAGCAATGG+TGG | + | chr4.3:89175417-89175436 | MS.gene34313:CDS | 60.0% | |
| CAAAGCCTCGCCACCATTGC+TGG | - | chr4.3:89175430-89175449 | None:intergenic | 60.0% | |
| CCATGGGGCAGGCCACATAT+GGG | - | chr4.3:89176479-89176498 | None:intergenic | 60.0% | |
| CGAGGAAGGGGAGGATGAAG+AGG | + | chr4.3:89175355-89175374 | MS.gene34313:CDS | 60.0% | |
| CTGCGCACTACGGCTGTAAC+AGG | - | chr4.3:89176295-89176314 | None:intergenic | 60.0% | |
| CTGTTACAGCCGTAGTGCGC+AGG | + | chr4.3:89176293-89176312 | MS.gene34313:CDS | 60.0% | |
| GCTCGCCACTCCTCTACAAC+AGG | + | chr4.3:89176773-89176792 | MS.gene34313:CDS | 60.0% | |
| TCCATGGGGCAGGCCACATA+TGG | - | chr4.3:89176480-89176499 | None:intergenic | 60.0% | |
| TGGAGGCAGAAGGCCAGCAA+TGG | + | chr4.3:89175414-89175433 | MS.gene34313:CDS | 60.0% | |
| TGGAGGGATGTGGAGGCAGA+AGG | + | chr4.3:89175404-89175423 | MS.gene34313:CDS | 60.0% | |
| CAAGGCAGTGCCTGAGCCTG+AGG | + | chr4.3:89175163-89175182 | MS.gene34313:CDS | 65.0% | |
| CCCATATGTGGCCTGCCCCA+TGG | + | chr4.3:89176476-89176495 | MS.gene34313:intron | 65.0% | |
| GGTCGAGGGCCCTGCTCAAA+AGG | - | chr4.3:89176366-89176385 | None:intergenic | 65.0% | |
| ! | GAAGGCCAGCAATGGTGGCG+AGG | + | chr4.3:89175422-89175441 | MS.gene34313:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89175095 | 89177612 | 89175095 | ID=MS.gene34313 |
| chr4.3 | mRNA | 89175095 | 89177612 | 89175095 | ID=MS.gene34313.t1;Parent=MS.gene34313 |
| chr4.3 | exon | 89175095 | 89175530 | 89175095 | ID=MS.gene34313.t1.exon1;Parent=MS.gene34313.t1 |
| chr4.3 | CDS | 89175095 | 89175530 | 89175095 | ID=cds.MS.gene34313.t1;Parent=MS.gene34313.t1 |
| chr4.3 | exon | 89176043 | 89176447 | 89176043 | ID=MS.gene34313.t1.exon2;Parent=MS.gene34313.t1 |
| chr4.3 | CDS | 89176043 | 89176447 | 89176043 | ID=cds.MS.gene34313.t1;Parent=MS.gene34313.t1 |
| chr4.3 | exon | 89176619 | 89176815 | 89176619 | ID=MS.gene34313.t1.exon3;Parent=MS.gene34313.t1 |
| chr4.3 | CDS | 89176619 | 89176815 | 89176619 | ID=cds.MS.gene34313.t1;Parent=MS.gene34313.t1 |
| chr4.3 | exon | 89177373 | 89177612 | 89177373 | ID=MS.gene34313.t1.exon4;Parent=MS.gene34313.t1 |
| chr4.3 | CDS | 89177373 | 89177612 | 89177373 | ID=cds.MS.gene34313.t1;Parent=MS.gene34313.t1 |
| Gene Sequence |
| Protein sequence |
