Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34315.t1 | XP_013454490.1 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 1.10E-235 | 825.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34315.t1 | A0A072UGG4 | 97.2 | 425 | 12 | 0 | 1 | 425 | 1 | 425 | 8.3e-236 | 825.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049697 | MS.gene34315 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene050476 | MS.gene34315 | 0.818604 | 1.80E-52 | -1.69E-46 |
| MS.gene050544 | MS.gene34315 | 0.807308 | 5.38E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene34315 | 0.81179 | 5.87E-51 | -1.69E-46 |
| MS.gene051816 | MS.gene34315 | 0.817113 | 3.90E-52 | -1.69E-46 |
| MS.gene052383 | MS.gene34315 | 0.806368 | 8.51E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene34315 | 0.831731 | 1.41E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene34315 | 0.828601 | 8.21E-55 | -1.69E-46 |
| MS.gene054593 | MS.gene34315 | 0.806917 | 6.52E-50 | -1.69E-46 |
| MS.gene055308 | MS.gene34315 | 0.828062 | 1.11E-54 | -1.69E-46 |
| MS.gene055957 | MS.gene34315 | 0.841045 | 6.03E-58 | -1.69E-46 |
| MS.gene056041 | MS.gene34315 | 0.82001 | 8.60E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene34315 | 0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene34315 | 0.806913 | 6.53E-50 | -1.69E-46 |
| MS.gene056528 | MS.gene34315 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene34315 | 0.801343 | 9.42E-49 | -1.69E-46 |
| MS.gene058128 | MS.gene34315 | 0.816503 | 5.35E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene34315 | 0.808882 | 2.49E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene34315 | 0.812733 | 3.65E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene34315 | 0.800972 | 1.12E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34315.t1 | MTR_4g005350 | 97.412 | 425 | 11 | 0 | 1 | 425 | 1 | 425 | 0.0 | 853 |
| MS.gene34315.t1 | MTR_8g104270 | 39.571 | 326 | 163 | 13 | 115 | 424 | 254 | 561 | 2.38e-47 | 171 |
| MS.gene34315.t1 | MTR_6g084440 | 40.379 | 317 | 166 | 10 | 115 | 424 | 300 | 600 | 1.28e-46 | 169 |
| MS.gene34315.t1 | MTR_6g084440 | 40.439 | 319 | 165 | 11 | 115 | 424 | 300 | 602 | 6.57e-46 | 167 |
| MS.gene34315.t1 | MTR_7g010160 | 34.535 | 333 | 178 | 12 | 122 | 424 | 422 | 744 | 2.57e-39 | 150 |
| MS.gene34315.t1 | MTR_5g040600 | 31.231 | 333 | 181 | 11 | 121 | 425 | 597 | 909 | 2.31e-29 | 121 |
| MS.gene34315.t1 | MTR_8g467380 | 31.667 | 240 | 140 | 6 | 194 | 410 | 587 | 825 | 3.56e-20 | 93.6 |
| MS.gene34315.t1 | MTR_8g467390 | 42.045 | 88 | 43 | 2 | 194 | 277 | 206 | 289 | 1.42e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34315.t1 | AT3G20260 | 59.729 | 442 | 156 | 10 | 1 | 425 | 1 | 437 | 1.66e-156 | 449 |
| MS.gene34315.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 1.60e-46 | 169 |
| MS.gene34315.t1 | AT1G73850 | 36.446 | 332 | 179 | 10 | 115 | 424 | 312 | 633 | 1.60e-46 | 169 |
| MS.gene34315.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34315.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34315.t1 | AT5G39785 | 31.024 | 332 | 197 | 5 | 125 | 425 | 276 | 606 | 2.20e-37 | 144 |
| MS.gene34315.t1 | AT5G39785 | 30.931 | 333 | 197 | 6 | 125 | 425 | 276 | 607 | 1.46e-35 | 139 |
| MS.gene34315.t1 | AT5G39785 | 29.412 | 357 | 195 | 8 | 125 | 425 | 276 | 631 | 4.05e-34 | 134 |
| MS.gene34315.t1 | AT1G69610 | 28.462 | 390 | 236 | 11 | 60 | 425 | 266 | 636 | 1.48e-30 | 124 |
| MS.gene34315.t1 | AT1G69610 | 28.462 | 390 | 236 | 11 | 60 | 425 | 267 | 637 | 1.56e-30 | 124 |
| MS.gene34315.t1 | AT1G69610 | 28.499 | 393 | 232 | 11 | 60 | 425 | 222 | 592 | 1.61e-30 | 124 |
| MS.gene34315.t1 | AT3G01175 | 27.536 | 345 | 182 | 11 | 119 | 424 | 260 | 575 | 9.07e-20 | 92.0 |
Find 100 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAACTTCTTCATGCTTT+TGG | 0.162837 | 4.3:-89204507 | None:intergenic |
| GAAAATTCACCTCGTATATT+TGG | 0.166047 | 4.3:-89203513 | None:intergenic |
| CTAGAGCGAGCATAAATTTC+AGG | 0.248869 | 4.3:-89203462 | None:intergenic |
| GTGCAGCATCTTAGTGAAAT+TGG | 0.249862 | 4.3:+89202581 | MS.gene34315:CDS |
| CAAAGCCTCGCCACCATTGC+TGG | 0.272542 | 4.3:-89202505 | None:intergenic |
| GCAGGAGTTTCAACAATTTC+AGG | 0.274624 | 4.3:+89203389 | MS.gene34315:CDS |
| AACTTGATTTATCGAATAAT+AGG | 0.282412 | 4.3:+89204629 | MS.gene34315:CDS |
| CACTTTGCCTAAACTACTTC+AGG | 0.289828 | 4.3:+89203488 | MS.gene34315:CDS |
| TTCTTGCTCCAGATCTTATC+AGG | 0.311925 | 4.3:+89203736 | MS.gene34315:CDS |
| TGACTAGAGAACAGCTGTTT+TGG | 0.334597 | 4.3:+89204587 | MS.gene34315:CDS |
| TCGAGACATGAATCTTCTTC+AGG | 0.336685 | 4.3:-89202413 | None:intergenic |
| AGCTTCTTTGATGTAGATCT+TGG | 0.341971 | 4.3:-89203147 | None:intergenic |
| TCCACATCCCTCCATTCATT+TGG | 0.357529 | 4.3:-89202473 | None:intergenic |
| GGCTTTGATTCCTCAGGCTC+AGG | 0.371626 | 4.3:-89202251 | None:intergenic |
| TCAATTATCCTGATAAGATC+TGG | 0.392578 | 4.3:-89203744 | None:intergenic |
| TCAAGCGTTATCAACCTGTT+TGG | 0.398641 | 4.3:+89203816 | MS.gene34315:CDS |
| GCTGATTCTGATTTCCAAAC+AGG | 0.399869 | 4.3:-89203830 | None:intergenic |
| GAGCCTCCTCTTTACCTCAT+TGG | 0.400140 | 4.3:-89202354 | None:intergenic |
| GAAGAGGAAGAGGGAGAGAC+AGG | 0.409837 | 4.3:+89202449 | MS.gene34315:CDS |
| TTTGGAACCTGAAGTAGTTT+AGG | 0.411769 | 4.3:-89203495 | None:intergenic |
| GCCTGAAAATATTCCCTACT+TGG | 0.415181 | 4.3:+89203242 | MS.gene34315:CDS |
| CCTTTCGTTTATTCCTGAAA+AGG | 0.417058 | 4.3:+89203781 | MS.gene34315:CDS |
| AGGGGAGGATGAAGAGGAAG+AGG | 0.437173 | 4.3:+89202439 | MS.gene34315:CDS |
| GGTCGAGGGCCCTGCTCAAA+AGG | 0.439174 | 4.3:-89203441 | None:intergenic |
| TTGACGCGAAAATCTTATCA+AGG | 0.439867 | 4.3:+89204545 | MS.gene34315:CDS |
| CTGCGCACTACGGCTGTAAC+AGG | 0.442848 | 4.3:-89203370 | None:intergenic |
| CTTTCGTTTATTCCTGAAAA+GGG | 0.442892 | 4.3:+89203782 | MS.gene34315:CDS |
| GTGTTGGGCTTTGATTCCTC+AGG | 0.443162 | 4.3:-89202257 | None:intergenic |
| ATATGAGTTATAAGATATCT+TGG | 0.448492 | 4.3:+89203331 | MS.gene34315:CDS |
| CATCTTAGTGAAATTGGAAA+AGG | 0.480151 | 4.3:+89202587 | MS.gene34315:CDS |
| TCCCTACTTGGATATTGAAA+CGG | 0.481023 | 4.3:+89203254 | MS.gene34315:CDS |
| AGGAGCTAAGGAAGAAGGGT+TGG | 0.486945 | 4.3:+89204467 | MS.gene34315:CDS |
| GCTCGCCACTCCTCTACAAC+AGG | 0.491100 | 4.3:+89203851 | MS.gene34315:CDS |
| GGGGAGGATGAAGAGGAAGA+GGG | 0.491674 | 4.3:+89202440 | MS.gene34315:CDS |
| GATTAGCAAGGGAATAGAAT+GGG | 0.491816 | 4.3:-89204670 | None:intergenic |
| GAAGAAGTTCAACTATTGCT+TGG | 0.493712 | 4.3:+89204517 | MS.gene34315:CDS |
| AGAAGCTGGCATCTCCCCTT+CGG | 0.493948 | 4.3:+89203163 | MS.gene34315:CDS |
| TTATTACCAATGAGGTAAAG+AGG | 0.499834 | 4.3:+89202348 | MS.gene34315:CDS |
| CGAGCATAAATTTCAGGTCG+AGG | 0.501283 | 4.3:-89203456 | None:intergenic |
| AGATGTTCAGTCTCATCATC+AGG | 0.502631 | 4.3:-89203213 | None:intergenic |
| TGATCAGGACCACCAGTGTT+GGG | 0.502702 | 4.3:-89202272 | None:intergenic |
| GAGAGACAGGACCAAATGAA+TGG | 0.508991 | 4.3:+89202462 | MS.gene34315:CDS |
| TTTGATGTAGATCTTGGAGA+TGG | 0.515789 | 4.3:-89203141 | None:intergenic |
| CTGAAATTTATGCTCGCTCT+AGG | 0.518886 | 4.3:+89203463 | MS.gene34315:CDS |
| TCAGGAATAAACGAAAGGTA+AGG | 0.521078 | 4.3:-89203776 | None:intergenic |
| TAGGTCAAATATGCTTGACT+TGG | 0.527289 | 4.3:+89203283 | MS.gene34315:CDS |
| ACTGAAGGAGCTAAGGAAGA+AGG | 0.531349 | 4.3:+89204462 | MS.gene34315:CDS |
| GAAGATTCATGTCTCGAGGA+AGG | 0.531829 | 4.3:+89202419 | MS.gene34315:CDS |
| TATCGAATAATAGGTTAGAG+AGG | 0.533149 | 4.3:+89204638 | MS.gene34315:CDS |
| AGGCAGAAGGCCAGCAATGG+TGG | 0.534428 | 4.3:+89202495 | MS.gene34315:CDS |
| CGAGGAAGGGGAGGATGAAG+AGG | 0.537283 | 4.3:+89202433 | MS.gene34315:CDS |
| TGATTAGCAAGGGAATAGAA+TGG | 0.538025 | 4.3:-89204671 | None:intergenic |
| AGATTCATGTCTCGAGGAAG+GGG | 0.539571 | 4.3:+89202421 | MS.gene34315:CDS |
| CTAAAGACTGTGATTAGCAA+GGG | 0.541390 | 4.3:-89204681 | None:intergenic |
| AAGATCTACATCAAAGAAGC+TGG | 0.541693 | 4.3:+89203149 | MS.gene34315:CDS |
| TTTAGGAAATCTCAGAAAGC+AGG | 0.542506 | 4.3:+89202197 | MS.gene34315:CDS |
| GACAGGACCAAATGAATGGA+GGG | 0.543843 | 4.3:+89202466 | MS.gene34315:CDS |
| GATATTGAAACGGCATATGT+AGG | 0.544289 | 4.3:+89203264 | MS.gene34315:CDS |
| CTGATCAGGACCACCAGTGT+TGG | 0.545402 | 4.3:-89202273 | None:intergenic |
| AAAGAATGTTATTCTTTGAT+CGG | 0.546997 | 4.3:+89202552 | MS.gene34315:CDS |
| AAGATTCATGTCTCGAGGAA+GGG | 0.547261 | 4.3:+89202420 | MS.gene34315:CDS |
| TGCCGTTTCAATATCCAAGT+AGG | 0.551085 | 4.3:-89203256 | None:intergenic |
| GTAGACTGAACCTGTTGTAG+AGG | 0.552512 | 4.3:-89203861 | None:intergenic |
| TGACGCGAAAATCTTATCAA+GGG | 0.554727 | 4.3:+89204546 | MS.gene34315:CDS |
| CAAGGGTTCTAAGAATGACT+AGG | 0.556783 | 4.3:+89204563 | MS.gene34315:CDS |
| AATTTCAGGTTCTATTGCAA+AGG | 0.557900 | 4.3:+89203403 | MS.gene34315:CDS |
| ACCAAATGAATGGAGGGATG+TGG | 0.560503 | 4.3:+89202472 | MS.gene34315:CDS |
| GCCGTTTCAATATCCAAGTA+GGG | 0.561156 | 4.3:-89203255 | None:intergenic |
| CGGTGAAACTGAAGGAGCTA+AGG | 0.567285 | 4.3:+89204455 | MS.gene34315:CDS |
| CTGTTACAGCCGTAGTGCGC+AGG | 0.568099 | 4.3:+89203371 | MS.gene34315:CDS |
| TTTCAAGGAAAGACACCGAA+GGG | 0.568486 | 4.3:-89203178 | None:intergenic |
| TGGAGGGATGTGGAGGCAGA+AGG | 0.569588 | 4.3:+89202482 | MS.gene34315:CDS |
| ATCGAATAATAGGTTAGAGA+GGG | 0.574093 | 4.3:+89204639 | MS.gene34315:CDS |
| ACTAAAGACTGTGATTAGCA+AGG | 0.583558 | 4.3:-89204682 | None:intergenic |
| CTGAAGGAGCTAAGGAAGAA+GGG | 0.591588 | 4.3:+89204463 | MS.gene34315:CDS |
| TCAAATATGCTTGACTTGGG+AGG | 0.593392 | 4.3:+89203287 | MS.gene34315:CDS |
| GAAGGCCAGCAATGGTGGCG+AGG | 0.595275 | 4.3:+89202500 | MS.gene34315:CDS |
| GAAATCTCAGAAAGCAGGTG+TGG | 0.595844 | 4.3:+89202202 | MS.gene34315:CDS |
| GTTGAAACTCCTGCGCACTA+CGG | 0.598745 | 4.3:-89203380 | None:intergenic |
| GCAGAAAGCGGTGAAACTGA+AGG | 0.602503 | 4.3:+89204447 | MS.gene34315:intron |
| CAAGGGAATAGAATGGGGCA+TGG | 0.602619 | 4.3:-89204664 | None:intergenic |
| CGATTCTTGTGCTGATGCTG+AGG | 0.602958 | 4.3:+89202313 | MS.gene34315:CDS |
| CAAGGCAGTGCCTGAGCCTG+AGG | 0.607834 | 4.3:+89202241 | MS.gene34315:CDS |
| TGAGGTAAAGAGGAGGCTCA+AGG | 0.611185 | 4.3:+89202358 | MS.gene34315:CDS |
| TGGAGGCAGAAGGCCAGCAA+TGG | 0.611341 | 4.3:+89202492 | MS.gene34315:CDS |
| GAGGAATCAAAGCCCAACAC+TGG | 0.613144 | 4.3:+89202260 | MS.gene34315:CDS |
| AGGTCAAATATGCTTGACTT+GGG | 0.614670 | 4.3:+89203284 | MS.gene34315:CDS |
| GAGCATAAATTTCAGGTCGA+GGG | 0.615669 | 4.3:-89203455 | None:intergenic |
| AAATGAATGGAGGGATGTGG+AGG | 0.617932 | 4.3:+89202475 | MS.gene34315:CDS |
| AGACAGGACCAAATGAATGG+AGG | 0.620870 | 4.3:+89202465 | MS.gene34315:CDS |
| TTCATGTCTCGAGGAAGGGG+AGG | 0.621507 | 4.3:+89202424 | MS.gene34315:CDS |
| GGTTCAGTCTACTCTTGAGA+AGG | 0.623341 | 4.3:+89203872 | MS.gene34315:CDS |
| CTGAACCTGTTGTAGAGGAG+TGG | 0.623679 | 4.3:-89203856 | None:intergenic |
| GAATCAAAGCCCAACACTGG+TGG | 0.626423 | 4.3:+89202263 | MS.gene34315:CDS |
| TGAAGAAGATTCATGTCTCG+AGG | 0.629329 | 4.3:+89202415 | MS.gene34315:CDS |
| GCACTACGGCTGTAACAGGT+AGG | 0.666438 | 4.3:-89203366 | None:intergenic |
| ATTAGCAAGGGAATAGAATG+GGG | 0.668816 | 4.3:-89204669 | None:intergenic |
| TTCAAGGAAAGACACCGAAG+GGG | 0.675812 | 4.3:-89203177 | None:intergenic |
| CTTCAGGTTCCAAATATACG+AGG | 0.690819 | 4.3:+89203504 | MS.gene34315:CDS |
| TTACCAATGAGGTAAAGAGG+AGG | 0.699801 | 4.3:+89202351 | MS.gene34315:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAGTATAAAAGAAATAT+TGG | + | chr4.3:89203591-89203610 | MS.gene34315:intron | 10.0% |
| !!! | TTTTGAAGATTAAAAAATTT+AGG | + | chr4.3:89202180-89202199 | MS.gene34315:CDS | 10.0% |
| !! | ATAATATAAAATTCCAAAGT+TGG | - | chr4.3:89203924-89203943 | None:intergenic | 15.0% |
| !! | TCAATTTATTAATAACTTTG+AGG | + | chr4.3:89202838-89202857 | MS.gene34315:intron | 15.0% |
| !! | TTTATCAAATGTGTTATATT+TGG | + | chr4.3:89202972-89202991 | MS.gene34315:intron | 15.0% |
| !! | AAAATCAAACTCTAATTGAT+AGG | - | chr4.3:89202724-89202743 | None:intergenic | 20.0% |
| !! | AAAGAATGTTATTCTTTGAT+CGG | + | chr4.3:89202552-89202571 | MS.gene34315:CDS | 20.0% |
| !! | AACTTGATTTATCGAATAAT+AGG | + | chr4.3:89204629-89204648 | MS.gene34315:CDS | 20.0% |
| !! | AATTAAAATCAGGATTATGT+TGG | - | chr4.3:89202894-89202913 | None:intergenic | 20.0% |
| !! | ACACTTAAAAGATCTAAATA+TGG | - | chr4.3:89202693-89202712 | None:intergenic | 20.0% |
| !! | ACTTAAAAGATCTAAATATG+GGG | - | chr4.3:89202691-89202710 | None:intergenic | 20.0% |
| !! | AGCAAATATATGTTAACTAT+TGG | + | chr4.3:89204128-89204147 | MS.gene34315:intron | 20.0% |
| !! | ATATGAGTTATAAGATATCT+TGG | + | chr4.3:89203331-89203350 | MS.gene34315:CDS | 20.0% |
| !! | ATTATGAGATTTGATAAATG+TGG | - | chr4.3:89203078-89203097 | None:intergenic | 20.0% |
| !! | CACTTAAAAGATCTAAATAT+GGG | - | chr4.3:89202692-89202711 | None:intergenic | 20.0% |
| !! | TAATAAATTGAAATGAATCC+AGG | - | chr4.3:89202829-89202848 | None:intergenic | 20.0% |
| !!! | AACATAATCCTGATTTTAAT+TGG | + | chr4.3:89202893-89202912 | MS.gene34315:intron | 20.0% |
| !!! | CTTTTATACTAAATAACTTC+AGG | - | chr4.3:89203585-89203604 | None:intergenic | 20.0% |
| !!! | TGCTATATGATTAACTTTTA+AGG | + | chr4.3:89204038-89204057 | MS.gene34315:intron | 20.0% |
| !!! | TTATTAATAACTTTGAGGAT+AGG | + | chr4.3:89202843-89202862 | MS.gene34315:intron | 20.0% |
| ! | AACAACAGAAAAGTAAATTC+TGG | - | chr4.3:89204324-89204343 | None:intergenic | 25.0% |
| ! | ACTGACATTATATTCAGATT+AGG | - | chr4.3:89202953-89202972 | None:intergenic | 25.0% |
| ! | CATATTAAAGAAGAACCATT+TGG | - | chr4.3:89204070-89204089 | None:intergenic | 25.0% |
| ! | CTTTCCTTGAAAAAATTTGA+AGG | + | chr4.3:89203189-89203208 | MS.gene34315:CDS | 25.0% |
| ! | TAAGTGTTTAAGCTAATGAA+TGG | + | chr4.3:89203668-89203687 | MS.gene34315:intron | 25.0% |
| ! | TGCATAAAACTTTAGATCAT+GGG | - | chr4.3:89204275-89204294 | None:intergenic | 25.0% |
| ! | TTTCATTTAAATGCAGAAAG+CGG | + | chr4.3:89204435-89204454 | MS.gene34315:intron | 25.0% |
| !! | AATTTTCTGTAAACTACTCT+AGG | + | chr4.3:89203529-89203548 | MS.gene34315:intron | 25.0% |
| !! | ATTGAGAAGAAACAGTTTTA+TGG | + | chr4.3:89202382-89202401 | MS.gene34315:CDS | 25.0% |
| !! | TAACTATTGGTTATACTTTG+AGG | + | chr4.3:89204141-89204160 | MS.gene34315:intron | 25.0% |
| !!! | CTGATTTTAATTGGAGTTAA+GGG | + | chr4.3:89202902-89202921 | MS.gene34315:intron | 25.0% |
| !!! | TGTTTTGACGAAATAGAATT+AGG | + | chr4.3:89204225-89204244 | MS.gene34315:intron | 25.0% |
| ATCGAATAATAGGTTAGAGA+GGG | + | chr4.3:89204639-89204658 | MS.gene34315:CDS | 30.0% | |
| CATCTTAGTGAAATTGGAAA+AGG | + | chr4.3:89202587-89202606 | MS.gene34315:CDS | 30.0% | |
| CCTTAACTCCAATTAAAATC+AGG | - | chr4.3:89202904-89202923 | None:intergenic | 30.0% | |
| CTTTAATATGCTTGTTCCAA+TGG | + | chr4.3:89204080-89204099 | MS.gene34315:intron | 30.0% | |
| CTTTCGTTTATTCCTGAAAA+GGG | + | chr4.3:89203782-89203801 | MS.gene34315:CDS | 30.0% | |
| GAAAATTCACCTCGTATATT+TGG | - | chr4.3:89203516-89203535 | None:intergenic | 30.0% | |
| GTGCATAAAACTTTAGATCA+TGG | - | chr4.3:89204276-89204295 | None:intergenic | 30.0% | |
| TATCGAATAATAGGTTAGAG+AGG | + | chr4.3:89204638-89204657 | MS.gene34315:CDS | 30.0% | |
| TCAATTATCCTGATAAGATC+TGG | - | chr4.3:89203747-89203766 | None:intergenic | 30.0% | |
| TCTGTTGTTAAAGATGAAGT+TGG | + | chr4.3:89204335-89204354 | MS.gene34315:intron | 30.0% | |
| TTATTACCAATGAGGTAAAG+AGG | + | chr4.3:89202348-89202367 | MS.gene34315:CDS | 30.0% | |
| ! | ATAAGATTTTCGCGTCAATA+AGG | - | chr4.3:89204543-89204562 | None:intergenic | 30.0% |
| ! | CGATGATTTTATTACCAATG+AGG | + | chr4.3:89202340-89202359 | MS.gene34315:CDS | 30.0% |
| ! | TAGTACATTTTGTTAGCAAC+AGG | - | chr4.3:89203038-89203057 | None:intergenic | 30.0% |
| ! | TTAAGCTAATGAATGGATTC+AGG | + | chr4.3:89203675-89203694 | MS.gene34315:intron | 30.0% |
| ! | TTGAACTTCTTCATGCTTTT+GGG | - | chr4.3:89204509-89204528 | None:intergenic | 30.0% |
| !! | AATTTCAGGTTCTATTGCAA+AGG | + | chr4.3:89203403-89203422 | MS.gene34315:CDS | 30.0% |
| !! | ACAACAGAATTTGCTAAAGA+TGG | - | chr4.3:89204301-89204320 | None:intergenic | 30.0% |
| !!! | AGGTCCTTCAAATTTTTTCA+AGG | - | chr4.3:89203196-89203215 | None:intergenic | 30.0% |
| !!! | CCTGATTTTAATTGGAGTTA+AGG | + | chr4.3:89202901-89202920 | MS.gene34315:intron | 30.0% |
| !!! | CTTTTAAGGTTTGATCCAAA+TGG | + | chr4.3:89204052-89204071 | MS.gene34315:intron | 30.0% |
| !!! | TGCTTCTTTTTTAGGTGAAA+CGG | + | chr4.3:89202626-89202645 | MS.gene34315:intron | 30.0% |
| !!! | TTAGCTCTTGCTTCTTTTTT+AGG | + | chr4.3:89202618-89202637 | MS.gene34315:intron | 30.0% |
| AAGATCTACATCAAAGAAGC+TGG | + | chr4.3:89203149-89203168 | MS.gene34315:CDS | 35.0% | |
| AATAACTTCAGGAACATCCA+TGG | - | chr4.3:89203574-89203593 | None:intergenic | 35.0% | |
| AATCAGGATTATGTTGGTGT+TGG | - | chr4.3:89202888-89202907 | None:intergenic | 35.0% | |
| AATTCCAAAGTTGGATCACA+AGG | - | chr4.3:89203915-89203934 | None:intergenic | 35.0% | |
| AGCTTCTTTGATGTAGATCT+TGG | - | chr4.3:89203150-89203169 | None:intergenic | 35.0% | |
| AGGGTTGGAGAAAAAATTCT+TGG | + | chr4.3:89204482-89204501 | MS.gene34315:CDS | 35.0% | |
| AGGTCAAATATGCTTGACTT+GGG | + | chr4.3:89203284-89203303 | MS.gene34315:CDS | 35.0% | |
| ATAACTTCAGGAACATCCAT+GGG | - | chr4.3:89203573-89203592 | None:intergenic | 35.0% | |
| CCAATGGTTAAATGCTAATC+AGG | + | chr4.3:89204096-89204115 | MS.gene34315:intron | 35.0% | |
| CCTGATTAGCATTTAACCAT+TGG | - | chr4.3:89204099-89204118 | None:intergenic | 35.0% | |
| CCTTTCGTTTATTCCTGAAA+AGG | + | chr4.3:89203781-89203800 | MS.gene34315:CDS | 35.0% | |
| GAAGAAGTTCAACTATTGCT+TGG | + | chr4.3:89204517-89204536 | MS.gene34315:CDS | 35.0% | |
| GAGATTTGATAAATGTGGAC+AGG | - | chr4.3:89203073-89203092 | None:intergenic | 35.0% | |
| GAGTTGCATGATGCTTAAAT+GGG | + | chr4.3:89202776-89202795 | MS.gene34315:intron | 35.0% | |
| GATATTGAAACGGCATATGT+AGG | + | chr4.3:89203264-89203283 | MS.gene34315:CDS | 35.0% | |
| GATTAGGCATGTTCAAAATG+TGG | - | chr4.3:89202937-89202956 | None:intergenic | 35.0% | |
| TAGGTCAAATATGCTTGACT+TGG | + | chr4.3:89203283-89203302 | MS.gene34315:CDS | 35.0% | |
| TCAGGAATAAACGAAAGGTA+AGG | - | chr4.3:89203779-89203798 | None:intergenic | 35.0% | |
| TCCCTACTTGGATATTGAAA+CGG | + | chr4.3:89203254-89203273 | MS.gene34315:CDS | 35.0% | |
| TGAAACATATTCTCTGTGTC+AGG | + | chr4.3:89203099-89203118 | MS.gene34315:intron | 35.0% | |
| TGACGCGAAAATCTTATCAA+GGG | + | chr4.3:89204546-89204565 | MS.gene34315:CDS | 35.0% | |
| TGAGTTGCATGATGCTTAAA+TGG | + | chr4.3:89202775-89202794 | MS.gene34315:intron | 35.0% | |
| TGATTTAGTGCTTGTCTTCA+TGG | + | chr4.3:89204376-89204395 | MS.gene34315:intron | 35.0% | |
| TTGACGCGAAAATCTTATCA+AGG | + | chr4.3:89204545-89204564 | MS.gene34315:CDS | 35.0% | |
| TTTACCTTGTGATCCAACTT+TGG | + | chr4.3:89203908-89203927 | MS.gene34315:intron | 35.0% | |
| TTTAGGAAATCTCAGAAAGC+AGG | + | chr4.3:89202197-89202216 | MS.gene34315:CDS | 35.0% | |
| TTTGATGTAGATCTTGGAGA+TGG | - | chr4.3:89203144-89203163 | None:intergenic | 35.0% | |
| ! | ATCAGGATTATGTTGGTGTT+GGG | - | chr4.3:89202887-89202906 | None:intergenic | 35.0% |
| ! | GAAAATGAACCTTTTGAGCA+GGG | + | chr4.3:89203432-89203451 | MS.gene34315:CDS | 35.0% |
| ! | GGAAAAAGATTTGGTAGACA+AGG | + | chr4.3:89202223-89202242 | MS.gene34315:CDS | 35.0% |
| ! | GTTGAACTTCTTCATGCTTT+TGG | - | chr4.3:89204510-89204529 | None:intergenic | 35.0% |
| ! | TCCAAGTAGGGAATATTTTC+AGG | - | chr4.3:89203246-89203265 | None:intergenic | 35.0% |
| ! | TGAAAATGAACCTTTTGAGC+AGG | + | chr4.3:89203431-89203450 | MS.gene34315:CDS | 35.0% |
| ! | TGAACTTCTTCATGCTTTTG+GGG | - | chr4.3:89204508-89204527 | None:intergenic | 35.0% |
| ! | TTTGGAACCTGAAGTAGTTT+AGG | - | chr4.3:89203498-89203517 | None:intergenic | 35.0% |
| ! | TTTTCTGACTTACACTGATC+AGG | - | chr4.3:89202290-89202309 | None:intergenic | 35.0% |
| !! | ACTTTTTCTTGTCCCTTTTC+AGG | - | chr4.3:89203797-89203816 | None:intergenic | 35.0% |
| !! | CCTTTTCAGGAATAAACGAA+AGG | - | chr4.3:89203784-89203803 | None:intergenic | 35.0% |
| !!! | GCTTCTTTTTTAGGTGAAAC+GGG | + | chr4.3:89202627-89202646 | MS.gene34315:intron | 35.0% |
| AACTTTAGATCATGGGCAGT+AGG | - | chr4.3:89204268-89204287 | None:intergenic | 40.0% | |
| AAGATTCATGTCTCGAGGAA+GGG | + | chr4.3:89202420-89202439 | MS.gene34315:CDS | 40.0% | |
| AGATGTTCAGTCTCATCATC+AGG | - | chr4.3:89203216-89203235 | None:intergenic | 40.0% | |
| AGCAGGTGTGGAAAAAGATT+TGG | + | chr4.3:89202214-89202233 | MS.gene34315:CDS | 40.0% | |
| CACTTTGCCTAAACTACTTC+AGG | + | chr4.3:89203488-89203507 | MS.gene34315:CDS | 40.0% | |
| CTAGAGCGAGCATAAATTTC+AGG | - | chr4.3:89203465-89203484 | None:intergenic | 40.0% | |
| CTGAAATTTATGCTCGCTCT+AGG | + | chr4.3:89203463-89203482 | MS.gene34315:CDS | 40.0% | |
| GCAGGAGTTTCAACAATTTC+AGG | + | chr4.3:89203389-89203408 | MS.gene34315:CDS | 40.0% | |
| GCCGTTTCAATATCCAAGTA+GGG | - | chr4.3:89203258-89203277 | None:intergenic | 40.0% | |
| GCCTGAAAATATTCCCTACT+TGG | + | chr4.3:89203242-89203261 | MS.gene34315:CDS | 40.0% | |
| GTGCAGCATCTTAGTGAAAT+TGG | + | chr4.3:89202581-89202600 | MS.gene34315:CDS | 40.0% | |
| TAACTTCAGGAACATCCATG+GGG | - | chr4.3:89203572-89203591 | None:intergenic | 40.0% | |
| TCAAGCGTTATCAACCTGTT+TGG | + | chr4.3:89203816-89203835 | MS.gene34315:CDS | 40.0% | |
| TCGAGACATGAATCTTCTTC+AGG | - | chr4.3:89202416-89202435 | None:intergenic | 40.0% | |
| TGAAGAAGATTCATGTCTCG+AGG | + | chr4.3:89202415-89202434 | MS.gene34315:CDS | 40.0% | |
| TTACCAATGAGGTAAAGAGG+AGG | + | chr4.3:89202351-89202370 | MS.gene34315:CDS | 40.0% | |
| TTCTTGCTCCAGATCTTATC+AGG | + | chr4.3:89203736-89203755 | MS.gene34315:CDS | 40.0% | |
| TTTCAAGGAAAGACACCGAA+GGG | - | chr4.3:89203181-89203200 | None:intergenic | 40.0% | |
| ! | CTTCAGGTTCCAAATATACG+AGG | + | chr4.3:89203504-89203523 | MS.gene34315:CDS | 40.0% |
| ! | GAGCATAAATTTCAGGTCGA+GGG | - | chr4.3:89203458-89203477 | None:intergenic | 40.0% |
| ! | GCTGATTCTGATTTCCAAAC+AGG | - | chr4.3:89203833-89203852 | None:intergenic | 40.0% |
| ! | TGACTAGAGAACAGCTGTTT+TGG | + | chr4.3:89204587-89204606 | MS.gene34315:CDS | 40.0% |
| ! | TGCCGTTTCAATATCCAAGT+AGG | - | chr4.3:89203259-89203278 | None:intergenic | 40.0% |
| !! | CAAGGGTTCTAAGAATGACT+AGG | + | chr4.3:89204563-89204582 | MS.gene34315:CDS | 40.0% |
| !! | TCAAATATGCTTGACTTGGG+AGG | + | chr4.3:89203287-89203306 | MS.gene34315:CDS | 40.0% |
| !! | TCTGCTTTTAATCCAAGTGC+AGG | + | chr4.3:89204178-89204197 | MS.gene34315:intron | 40.0% |
| !! | TTTTCAAGGAAAGACACCGA+AGG | - | chr4.3:89203182-89203201 | None:intergenic | 40.0% |
| !!! | CTTTTTTAGGTGAAACGGGA+GGG | + | chr4.3:89202631-89202650 | MS.gene34315:intron | 40.0% |
| !!! | TCTTTTTTAGGTGAAACGGG+AGG | + | chr4.3:89202630-89202649 | MS.gene34315:intron | 40.0% |
| AAATGAATGGAGGGATGTGG+AGG | + | chr4.3:89202475-89202494 | MS.gene34315:CDS | 45.0% | |
| ACCAAATGAATGGAGGGATG+TGG | + | chr4.3:89202472-89202491 | MS.gene34315:CDS | 45.0% | |
| ACTGAAGGAGCTAAGGAAGA+AGG | + | chr4.3:89204462-89204481 | MS.gene34315:CDS | 45.0% | |
| AGACAGGACCAAATGAATGG+AGG | + | chr4.3:89202465-89202484 | MS.gene34315:CDS | 45.0% | |
| AGATTCATGTCTCGAGGAAG+GGG | + | chr4.3:89202421-89202440 | MS.gene34315:CDS | 45.0% | |
| CAAGTGCAGGACAGCTTATT+GGG | + | chr4.3:89204191-89204210 | MS.gene34315:intron | 45.0% | |
| CATCATGCAACTCATGTAGC+AGG | - | chr4.3:89202769-89202788 | None:intergenic | 45.0% | |
| CATGATGCTTAAATGGGTGC+TGG | + | chr4.3:89202782-89202801 | MS.gene34315:intron | 45.0% | |
| CTGAAGGAGCTAAGGAAGAA+GGG | + | chr4.3:89204463-89204482 | MS.gene34315:CDS | 45.0% | |
| GAAATCTCAGAAAGCAGGTG+TGG | + | chr4.3:89202202-89202221 | MS.gene34315:CDS | 45.0% | |
| GAAGATTCATGTCTCGAGGA+AGG | + | chr4.3:89202419-89202438 | MS.gene34315:CDS | 45.0% | |
| GACAGGACCAAATGAATGGA+GGG | + | chr4.3:89202466-89202485 | MS.gene34315:CDS | 45.0% | |
| GAGAGACAGGACCAAATGAA+TGG | + | chr4.3:89202462-89202481 | MS.gene34315:CDS | 45.0% | |
| GGTTCAGTCTACTCTTGAGA+AGG | + | chr4.3:89203872-89203891 | MS.gene34315:CDS | 45.0% | |
| GTAGACTGAACCTGTTGTAG+AGG | - | chr4.3:89203864-89203883 | None:intergenic | 45.0% | |
| TCCACATCCCTCCATTCATT+TGG | - | chr4.3:89202476-89202495 | None:intergenic | 45.0% | |
| TTCAAGGAAAGACACCGAAG+GGG | - | chr4.3:89203180-89203199 | None:intergenic | 45.0% | |
| ! | CGAGCATAAATTTCAGGTCG+AGG | - | chr4.3:89203459-89203478 | None:intergenic | 45.0% |
| ! | CTACTCTAGGAACCCATATG+TGG | + | chr4.3:89203542-89203561 | MS.gene34315:intron | 45.0% |
| ! | TTTGAAACTTGGATGCTGCC+TGG | + | chr4.3:89202808-89202827 | MS.gene34315:intron | 45.0% |
| !!! | GGTGCTGGCATTTTGAAACT+TGG | + | chr4.3:89202797-89202816 | MS.gene34315:intron | 45.0% |
| AGGAGCTAAGGAAGAAGGGT+TGG | + | chr4.3:89204467-89204486 | MS.gene34315:CDS | 50.0% | |
| CAAGGGAATAGAATGGGGCA+TGG | - | chr4.3:89204667-89204686 | None:intergenic | 50.0% | |
| CCAAGTGCAGGACAGCTTAT+TGG | + | chr4.3:89204190-89204209 | MS.gene34315:intron | 50.0% | |
| CCAATAAGCTGTCCTGCACT+TGG | - | chr4.3:89204193-89204212 | None:intergenic | 50.0% | |
| CGGTGAAACTGAAGGAGCTA+AGG | + | chr4.3:89204455-89204474 | MS.gene34315:CDS | 50.0% | |
| CTGAACCTGTTGTAGAGGAG+TGG | - | chr4.3:89203859-89203878 | None:intergenic | 50.0% | |
| GAATCAAAGCCCAACACTGG+TGG | + | chr4.3:89202263-89202282 | MS.gene34315:CDS | 50.0% | |
| GAGCCTCCTCTTTACCTCAT+TGG | - | chr4.3:89202357-89202376 | None:intergenic | 50.0% | |
| GAGGAATCAAAGCCCAACAC+TGG | + | chr4.3:89202260-89202279 | MS.gene34315:CDS | 50.0% | |
| GCAGAAAGCGGTGAAACTGA+AGG | + | chr4.3:89204447-89204466 | MS.gene34315:intron | 50.0% | |
| GTTGAAACTCCTGCGCACTA+CGG | - | chr4.3:89203383-89203402 | None:intergenic | 50.0% | |
| TGAGGTAAAGAGGAGGCTCA+AGG | + | chr4.3:89202358-89202377 | MS.gene34315:CDS | 50.0% | |
| TGATCAGGACCACCAGTGTT+GGG | - | chr4.3:89202275-89202294 | None:intergenic | 50.0% | |
| TGCAGGACAGCTTATTGGGA+GGG | + | chr4.3:89204195-89204214 | MS.gene34315:intron | 50.0% | |
| ! | CGATTCTTGTGCTGATGCTG+AGG | + | chr4.3:89202313-89202332 | MS.gene34315:CDS | 50.0% |
| ! | GTGTTGGGCTTTGATTCCTC+AGG | - | chr4.3:89202260-89202279 | None:intergenic | 50.0% |
| AGAAGCTGGCATCTCCCCTT+CGG | + | chr4.3:89203163-89203182 | MS.gene34315:CDS | 55.0% | |
| AGGGGAGGATGAAGAGGAAG+AGG | + | chr4.3:89202439-89202458 | MS.gene34315:CDS | 55.0% | |
| CAGGACAGCTTATTGGGAGG+GGG | + | chr4.3:89204197-89204216 | MS.gene34315:intron | 55.0% | |
| CTGATCAGGACCACCAGTGT+TGG | - | chr4.3:89202276-89202295 | None:intergenic | 55.0% | |
| GAAGAGGAAGAGGGAGAGAC+AGG | + | chr4.3:89202449-89202468 | MS.gene34315:CDS | 55.0% | |
| GCACTACGGCTGTAACAGGT+AGG | - | chr4.3:89203369-89203388 | None:intergenic | 55.0% | |
| GCAGGACAGCTTATTGGGAG+GGG | + | chr4.3:89204196-89204215 | MS.gene34315:intron | 55.0% | |
| GGGGAGGATGAAGAGGAAGA+GGG | + | chr4.3:89202440-89202459 | MS.gene34315:CDS | 55.0% | |
| GTGCAGGACAGCTTATTGGG+AGG | + | chr4.3:89204194-89204213 | MS.gene34315:intron | 55.0% | |
| TTCAGGAACATCCATGGGGC+AGG | - | chr4.3:89203568-89203587 | None:intergenic | 55.0% | |
| TTCATGTCTCGAGGAAGGGG+AGG | + | chr4.3:89202424-89202443 | MS.gene34315:CDS | 55.0% | |
| ! | GGCTTTGATTCCTCAGGCTC+AGG | - | chr4.3:89202254-89202273 | None:intergenic | 55.0% |
| AGGCAGAAGGCCAGCAATGG+TGG | + | chr4.3:89202495-89202514 | MS.gene34315:CDS | 60.0% | |
| CAAAGCCTCGCCACCATTGC+TGG | - | chr4.3:89202508-89202527 | None:intergenic | 60.0% | |
| CCATGGGGCAGGCCACATAT+GGG | - | chr4.3:89203557-89203576 | None:intergenic | 60.0% | |
| CGAGGAAGGGGAGGATGAAG+AGG | + | chr4.3:89202433-89202452 | MS.gene34315:CDS | 60.0% | |
| CTGCGCACTACGGCTGTAAC+AGG | - | chr4.3:89203373-89203392 | None:intergenic | 60.0% | |
| CTGTTACAGCCGTAGTGCGC+AGG | + | chr4.3:89203371-89203390 | MS.gene34315:CDS | 60.0% | |
| GCTCGCCACTCCTCTACAAC+AGG | + | chr4.3:89203851-89203870 | MS.gene34315:CDS | 60.0% | |
| TCCATGGGGCAGGCCACATA+TGG | - | chr4.3:89203558-89203577 | None:intergenic | 60.0% | |
| TGGAGGCAGAAGGCCAGCAA+TGG | + | chr4.3:89202492-89202511 | MS.gene34315:CDS | 60.0% | |
| TGGAGGGATGTGGAGGCAGA+AGG | + | chr4.3:89202482-89202501 | MS.gene34315:CDS | 60.0% | |
| CAAGGCAGTGCCTGAGCCTG+AGG | + | chr4.3:89202241-89202260 | MS.gene34315:CDS | 65.0% | |
| CCCATATGTGGCCTGCCCCA+TGG | + | chr4.3:89203554-89203573 | MS.gene34315:intron | 65.0% | |
| GGTCGAGGGCCCTGCTCAAA+AGG | - | chr4.3:89203444-89203463 | None:intergenic | 65.0% | |
| ! | GAAGGCCAGCAATGGTGGCG+AGG | + | chr4.3:89202500-89202519 | MS.gene34315:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89202173 | 89204690 | 89202173 | ID=MS.gene34315 |
| chr4.3 | mRNA | 89202173 | 89204690 | 89202173 | ID=MS.gene34315.t1;Parent=MS.gene34315 |
| chr4.3 | exon | 89202173 | 89202608 | 89202173 | ID=MS.gene34315.t1.exon1;Parent=MS.gene34315.t1 |
| chr4.3 | CDS | 89202173 | 89202608 | 89202173 | ID=cds.MS.gene34315.t1;Parent=MS.gene34315.t1 |
| chr4.3 | exon | 89203121 | 89203525 | 89203121 | ID=MS.gene34315.t1.exon2;Parent=MS.gene34315.t1 |
| chr4.3 | CDS | 89203121 | 89203525 | 89203121 | ID=cds.MS.gene34315.t1;Parent=MS.gene34315.t1 |
| chr4.3 | exon | 89203697 | 89203893 | 89203697 | ID=MS.gene34315.t1.exon3;Parent=MS.gene34315.t1 |
| chr4.3 | CDS | 89203697 | 89203893 | 89203697 | ID=cds.MS.gene34315.t1;Parent=MS.gene34315.t1 |
| chr4.3 | exon | 89204451 | 89204690 | 89204451 | ID=MS.gene34315.t1.exon4;Parent=MS.gene34315.t1 |
| chr4.3 | CDS | 89204451 | 89204690 | 89204451 | ID=cds.MS.gene34315.t1;Parent=MS.gene34315.t1 |
| Gene Sequence |
| Protein sequence |
