Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70224.t1 | AET04735.2 | 99.6 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.00E+00 | 1838.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70224.t1 | Q9FMJ0 | 76.8 | 1122 | 224 | 9 | 1 | 1089 | 3 | 1121 | 0.0e+00 | 1387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70224.t1 | G7LE13 | 99.6 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.0e+00 | 1838.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049744 | MS.gene70224 | 0.814357 | 1.61E-51 | -1.69E-46 |
| MS.gene050213 | MS.gene70224 | 0.830932 | 2.22E-55 | -1.69E-46 |
| MS.gene050257 | MS.gene70224 | 0.836813 | 7.51E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene70224 | 0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene050348 | MS.gene70224 | 0.845822 | 3.19E-59 | -1.69E-46 |
| MS.gene051209 | MS.gene70224 | 0.815076 | 1.11E-51 | -1.69E-46 |
| MS.gene051834 | MS.gene70224 | 0.852 | 6.15E-61 | -1.69E-46 |
| MS.gene051835 | MS.gene70224 | 0.860186 | 2.46E-63 | -1.69E-46 |
| MS.gene052216 | MS.gene70224 | 0.813269 | 2.79E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene70224 | 0.838829 | 2.28E-57 | -1.69E-46 |
| MS.gene052775 | MS.gene70224 | 0.826088 | 3.29E-54 | -1.69E-46 |
| MS.gene052776 | MS.gene70224 | 0.863868 | 1.83E-64 | -1.69E-46 |
| MS.gene053486 | MS.gene70224 | 0.88399 | 2.81E-71 | -1.69E-46 |
| MS.gene053620 | MS.gene70224 | 0.800348 | 1.50E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene70224 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene056519 | MS.gene70224 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene056622 | MS.gene70224 | 0.846714 | 1.83E-59 | -1.69E-46 |
| MS.gene058289 | MS.gene70224 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene70224 | 0.813445 | 2.55E-51 | -1.69E-46 |
| MS.gene058919 | MS.gene70224 | 0.80607 | 9.83E-50 | -1.69E-46 |
| MS.gene060349 | MS.gene70224 | 0.834399 | 3.07E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene70224 | MS.gene99137 | PPI |
| MS.gene70224 | MS.gene065419 | PPI |
| MS.gene70224 | MS.gene69853 | PPI |
| MS.gene70224 | MS.gene024151 | PPI |
| MS.gene70224 | MS.gene064882 | PPI |
| MS.gene70224 | MS.gene037879 | PPI |
| MS.gene70224 | MS.gene055394 | PPI |
| MS.gene70224 | MS.gene033585 | PPI |
| MS.gene70224 | MS.gene073174 | PPI |
| MS.gene70224 | MS.gene55072 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70224.t1 | MTR_8g093570 | 99.633 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.0 | 2230 |
| MS.gene70224.t1 | MTR_8g093570 | 99.413 | 852 | 5 | 0 | 1 | 852 | 1 | 852 | 0.0 | 1737 |
| MS.gene70224.t1 | MTR_3g096110 | 76.777 | 211 | 45 | 2 | 1 | 209 | 1 | 209 | 1.09e-107 | 339 |
| MS.gene70224.t1 | MTR_3g096110 | 82.000 | 100 | 15 | 1 | 838 | 934 | 212 | 311 | 8.86e-44 | 162 |
| MS.gene70224.t1 | MTR_3g096100 | 76.923 | 156 | 27 | 1 | 942 | 1088 | 27 | 182 | 5.92e-63 | 212 |
| MS.gene70224.t1 | MTR_3g116250 | 42.045 | 264 | 147 | 5 | 827 | 1088 | 1774 | 2033 | 2.01e-53 | 205 |
| MS.gene70224.t1 | MTR_5g034120 | 33.603 | 247 | 151 | 6 | 829 | 1072 | 555 | 791 | 1.08e-28 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70224.t1 | AT5G64070 | 71.897 | 1128 | 269 | 14 | 1 | 1089 | 3 | 1121 | 0.0 | 1565 |
| MS.gene70224.t1 | AT5G09350 | 70.071 | 1126 | 286 | 13 | 1 | 1088 | 3 | 1115 | 0.0 | 1535 |
| MS.gene70224.t1 | AT5G64070 | 64.475 | 867 | 260 | 14 | 1 | 828 | 3 | 860 | 0.0 | 1061 |
| MS.gene70224.t1 | AT1G49340 | 42.045 | 264 | 147 | 5 | 827 | 1088 | 1760 | 2019 | 1.42e-53 | 206 |
| MS.gene70224.t1 | AT1G49340 | 42.045 | 264 | 147 | 5 | 827 | 1088 | 1760 | 2019 | 1.42e-53 | 206 |
| MS.gene70224.t1 | AT1G49340 | 42.045 | 264 | 147 | 5 | 827 | 1088 | 1767 | 2026 | 1.51e-53 | 206 |
| MS.gene70224.t1 | AT1G49340 | 42.045 | 264 | 147 | 5 | 827 | 1088 | 1767 | 2026 | 1.51e-53 | 206 |
| MS.gene70224.t1 | AT1G51040 | 40.152 | 264 | 144 | 6 | 827 | 1088 | 272 | 523 | 5.61e-51 | 189 |
| MS.gene70224.t1 | AT1G60490 | 32.258 | 248 | 153 | 7 | 829 | 1072 | 561 | 797 | 1.31e-27 | 121 |
Find 252 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATCATACATATTGATTT+TGG | 0.147588 | 4.1:-8413387 | MS.gene70224:CDS |
| GTGAAAATGGTTGGCTTATT+AGG | 0.167216 | 4.1:-8421825 | MS.gene70224:CDS |
| AGATTCAGGCTAACAAATTT+TGG | 0.194951 | 4.1:+8416983 | None:intergenic |
| GGACATTTCTCTTCAGAATT+AGG | 0.201559 | 4.1:+8420761 | None:intergenic |
| AGAAAGAGAATTTCTTTAAA+AGG | 0.204269 | 4.1:-8421072 | MS.gene70224:CDS |
| CCCCTTGGGCTTATCCATTA+TGG | 0.212232 | 4.1:-8417096 | MS.gene70224:CDS |
| AGCTCACGTGTTAATTTAAA+AGG | 0.213153 | 4.1:+8413318 | None:intergenic |
| ATTTATCCCTGAAGAATTTC+CGG | 0.223562 | 4.1:+8420702 | None:intergenic |
| TCACTATGTGACACATCTTA+TGG | 0.256714 | 4.1:-8418257 | MS.gene70224:CDS |
| TCATCCTCTTCATCAGGTTT+TGG | 0.261617 | 4.1:+8420740 | None:intergenic |
| CAACTTATTTCTCACTTCTA+TGG | 0.281782 | 4.1:-8414931 | MS.gene70224:intron |
| TAAAGCACCACCTCGGAAAA+AGG | 0.285319 | 4.1:-8416834 | MS.gene70224:CDS |
| TGCCTTGTCTGGTGAACTTT+GGG | 0.289925 | 4.1:-8415911 | MS.gene70224:CDS |
| CACGGTCTTTGAACAATTTA+CGG | 0.292700 | 4.1:+8420486 | None:intergenic |
| ATTCTCTTTCTCAGAGTCTA+AGG | 0.318759 | 4.1:+8421084 | None:intergenic |
| GACAAGGCATCACTGGCTTT+GGG | 0.322107 | 4.1:+8415925 | None:intergenic |
| GTGTTTCCACTGACAGATTC+AGG | 0.323756 | 4.1:+8416969 | None:intergenic |
| GTACGCAAGGCTTCTATATA+CGG | 0.326417 | 4.1:-8415871 | MS.gene70224:CDS |
| ACTAGTGATTCTAGTGAAAA+TGG | 0.334740 | 4.1:-8421838 | MS.gene70224:CDS |
| TCCTCTTGCATATTATTTCC+CGG | 0.336403 | 4.1:+8421331 | None:intergenic |
| ATTAACCCCACCAGGTGAAT+TGG | 0.346612 | 4.1:+8413353 | None:intergenic |
| TGATGGGATTAGTAGGATTC+AGG | 0.351589 | 4.1:-8421530 | MS.gene70224:CDS |
| AAAGGTTCTTAAGAGATAGT+AGG | 0.351646 | 4.1:-8421054 | MS.gene70224:CDS |
| ATTCCCTCCTAACAGGCTAA+TGG | 0.353082 | 4.1:-8415955 | MS.gene70224:intron |
| TCTTCTATTGCCACTGTACT+TGG | 0.357360 | 4.1:+8416797 | None:intergenic |
| TTAAATATCCTATTCTCATC+AGG | 0.359261 | 4.1:+8421292 | None:intergenic |
| TTCTCAAGGTGGAATTCCTT+TGG | 0.363024 | 4.1:-8417149 | MS.gene70224:CDS |
| CTGAACTTTCCTTGTTCAAA+AGG | 0.367792 | 4.1:-8420610 | MS.gene70224:CDS |
| TGACAGCTGATCCTGGGGTT+AGG | 0.371582 | 4.1:-8416874 | MS.gene70224:CDS |
| TGACTTTGACTCAATTTCCC+TGG | 0.372782 | 4.1:+8421867 | None:intergenic |
| TGATTGCAGGCAGGAGCATC+TGG | 0.384919 | 4.1:-8414959 | MS.gene70224:CDS |
| AGACAAGGCATCACTGGCTT+TGG | 0.386006 | 4.1:+8415924 | None:intergenic |
| ACCTCTTGTGCTGTCCATAA+TGG | 0.386469 | 4.1:+8417082 | None:intergenic |
| GAGGAACTTTGTCGAGAGTA+TGG | 0.386545 | 4.1:-8413607 | MS.gene70224:CDS |
| TTATGTTGGTATCAGGATTC+GGG | 0.388059 | 4.1:-8412396 | MS.gene70224:intron |
| TCTTCTTGTTGAGATGTTGC+AGG | 0.395308 | 4.1:-8412998 | MS.gene70224:intron |
| ATGCCTTGTCTGGTGAACTT+TGG | 0.395615 | 4.1:-8415912 | MS.gene70224:CDS |
| GAGCACAGAACTACCGTATC+TGG | 0.395767 | 4.1:+8413999 | None:intergenic |
| TTGAGAAAGCTTCTGAGAAC+TGG | 0.397468 | 4.1:+8417165 | None:intergenic |
| AAGCTGTTCTCTTGAATTCT+CGG | 0.398115 | 4.1:-8417361 | MS.gene70224:CDS |
| ATCCATCTCAGTTCCGTAAA+GGG | 0.398557 | 4.1:-8418310 | MS.gene70224:CDS |
| GAGATGGATTGATCGGTAAT+GGG | 0.400367 | 4.1:+8418324 | None:intergenic |
| GAAGTACACAAAACTTCATA+AGG | 0.400506 | 4.1:+8414050 | None:intergenic |
| GACTTTGACTCAATTTCCCT+GGG | 0.403873 | 4.1:+8421868 | None:intergenic |
| AAGAAGCTGGTCTACCGCTT+TGG | 0.404302 | 4.1:-8414079 | MS.gene70224:CDS |
| CAATGCAATCTTAAGCGACT+TGG | 0.405719 | 4.1:+8421600 | None:intergenic |
| GTAACAGAGGTTCAGAATAC+TGG | 0.408394 | 4.1:-8418045 | MS.gene70224:CDS |
| ATGATAATGATGGGATTAGT+AGG | 0.414622 | 4.1:-8421537 | MS.gene70224:CDS |
| AAAGCGGTAGACCAGCTTCT+TGG | 0.414927 | 4.1:+8414081 | None:intergenic |
| TTGGCAGCAATGTGTCTCCT+TGG | 0.415569 | 4.1:-8412217 | MS.gene70224:intron |
| GCATAACGGGAACCTCCTAT+TGG | 0.419767 | 4.1:-8413421 | MS.gene70224:CDS |
| GGACTCCCTTTGAAAGGTGC+TGG | 0.422221 | 4.1:-8416072 | MS.gene70224:CDS |
| AGTCATGGTAAGCCCCTTTA+CGG | 0.426797 | 4.1:+8418297 | None:intergenic |
| AATTGAAGATTCAGAGCTGC+TGG | 0.427316 | 4.1:-8420456 | MS.gene70224:CDS |
| CGCTATCTCCTGATGAGAAT+AGG | 0.428095 | 4.1:-8421300 | MS.gene70224:CDS |
| GGTGGAATTCCTTTGGCAAA+TGG | 0.429030 | 4.1:-8417142 | MS.gene70224:CDS |
| ACCTGGGCAAGTTTAAAACT+TGG | 0.430414 | 4.1:+8413824 | None:intergenic |
| TTCCCTCCTAACAGGCTAAT+GGG | 0.431477 | 4.1:-8415954 | MS.gene70224:intron |
| TGCTATCCAATTCACCTGGT+GGG | 0.431809 | 4.1:-8413359 | MS.gene70224:CDS |
| TGAGATGGATTGATCGGTAA+TGG | 0.433249 | 4.1:+8418323 | None:intergenic |
| TATGACCTTCTTCGTCCAAT+AGG | 0.433611 | 4.1:+8413406 | None:intergenic |
| GCATGATCATGCCGGGGTGC+GGG | 0.436616 | 4.1:-8421749 | MS.gene70224:CDS |
| CACTATGTGACACATCTTAT+GGG | 0.437834 | 4.1:-8418256 | MS.gene70224:CDS |
| AAAAGGATGGTTTCTTTCAA+AGG | 0.440298 | 4.1:-8421000 | MS.gene70224:CDS |
| TTCACGTAAACTTGAGATGT+TGG | 0.440679 | 4.1:+8413877 | None:intergenic |
| ACATAAGCCTAGTCCGTCAT+TGG | 0.444181 | 4.1:-8421647 | MS.gene70224:CDS |
| TAAAGAGTGGAGATGATTGC+AGG | 0.444745 | 4.1:-8414972 | MS.gene70224:CDS |
| ATTCTTCAGGGATAAATTTG+AGG | 0.453710 | 4.1:-8420696 | MS.gene70224:CDS |
| AGAGTCTAAGGCATCTTTCT+CGG | 0.453762 | 4.1:+8421096 | None:intergenic |
| GTCAATGAAAATAGCAATAA+CGG | 0.454848 | 4.1:-8420548 | MS.gene70224:CDS |
| TCAGATTGCAGCTACTTTGA+TGG | 0.455400 | 4.1:-8421500 | MS.gene70224:CDS |
| AGGCTCTTCTTCCTCGCCAT+TGG | 0.456515 | 4.1:+8420634 | None:intergenic |
| ATGTATACTCTTCCCTTGAC+AGG | 0.460922 | 4.1:-8421709 | MS.gene70224:CDS |
| AATTGCCTGAGCAGTCGATC+TGG | 0.462214 | 4.1:+8417033 | None:intergenic |
| GGTTAGGTTGGAAGATATTG+AGG | 0.462981 | 4.1:-8416858 | MS.gene70224:CDS |
| GTAGTATTGACAGCTGATCC+TGG | 0.464657 | 4.1:-8416881 | MS.gene70224:CDS |
| TTTCACTAGAATCACTAGTC+AGG | 0.465454 | 4.1:+8421842 | None:intergenic |
| AGCATGATCATGCCGGGGTG+CGG | 0.465575 | 4.1:-8421750 | MS.gene70224:CDS |
| ACATCCTATCATTGCTATTA+CGG | 0.468051 | 4.1:+8417056 | None:intergenic |
| TCACGTAAACTTGAGATGTT+GGG | 0.471503 | 4.1:+8413878 | None:intergenic |
| CCATCTCAGTTTAACAGAAG+AGG | 0.477378 | 4.1:-8412319 | MS.gene70224:intron |
| TTCACCAGACAAGGCATCAC+TGG | 0.477760 | 4.1:+8415918 | None:intergenic |
| GTCTGTTTCCCACTGGGAAA+GGG | 0.478023 | 4.1:-8417416 | MS.gene70224:CDS |
| AGCAGAACATGACAGTGATC+TGG | 0.478274 | 4.1:-8416915 | MS.gene70224:CDS |
| ACTTCGATGCATATCATGTA+AGG | 0.479141 | 4.1:+8417329 | None:intergenic |
| GCAAAAGGAGAAGCGCCTCT+TGG | 0.479804 | 4.1:-8416093 | MS.gene70224:CDS |
| TCTTATCTTCGAATTTCTCC+CGG | 0.481263 | 4.1:+8420819 | None:intergenic |
| CCTGGTGTGCTACTTTCTGC+AGG | 0.481921 | 4.1:-8413574 | MS.gene70224:intron |
| AGCTGATCCTGGGGTTAGGT+TGG | 0.483412 | 4.1:-8416870 | MS.gene70224:CDS |
| TTGTTAACAAGGTGAAAGAT+AGG | 0.483447 | 4.1:-8413443 | MS.gene70224:intron |
| ATACGGGAAGTTACCTGGTT+GGG | 0.483646 | 4.1:-8415854 | MS.gene70224:CDS |
| TGGTAGGCTGCGGCAGCAAA+AGG | 0.483803 | 4.1:-8416108 | MS.gene70224:intron |
| TTAGCAGTAGCCTTGATGCT+TGG | 0.485107 | 4.1:-8412182 | MS.gene70224:CDS |
| AAAGTTTATGCCAAGTCCTA+AGG | 0.486629 | 4.1:-8421269 | MS.gene70224:CDS |
| AGGTGAAAGATAGGCATAAC+GGG | 0.489483 | 4.1:-8413434 | MS.gene70224:CDS |
| AGCTGTTCTCTTGAATTCTC+GGG | 0.490478 | 4.1:-8417360 | MS.gene70224:CDS |
| AAAGCCAGTGATGCCTTGTC+TGG | 0.494239 | 4.1:-8415922 | MS.gene70224:CDS |
| AACTTTGTCGAGAGTATGGC+AGG | 0.494454 | 4.1:-8413603 | MS.gene70224:CDS |
| AGATGACGGTGATTCTGAAA+AGG | 0.499989 | 4.1:-8421209 | MS.gene70224:CDS |
| TCTCTTGAATTCTCGGGAGA+AGG | 0.500659 | 4.1:-8417354 | MS.gene70224:CDS |
| AAGGTTCTTAAGAGATAGTA+GGG | 0.501654 | 4.1:-8421053 | MS.gene70224:CDS |
| CCTCTTCTGTTAAACTGAGA+TGG | 0.503946 | 4.1:+8412319 | None:intergenic |
| GAGGGTGTATATGAAGCATC+AGG | 0.504181 | 4.1:-8416938 | MS.gene70224:CDS |
| AAATAATCAAAGAACTCGCT+TGG | 0.504543 | 4.1:+8413176 | None:intergenic |
| CTTTGCGGCATTGGGGACCC+AGG | 0.505091 | 4.1:+8418368 | None:intergenic |
| AGTCTGTTTCCCACTGGGAA+AGG | 0.505160 | 4.1:-8417417 | MS.gene70224:CDS |
| AAGAGAACAGCTTCATCTAC+TGG | 0.505823 | 4.1:+8417371 | None:intergenic |
| TGTACCGTAATAGCAATGAT+AGG | 0.506838 | 4.1:-8417060 | MS.gene70224:CDS |
| ATATAGATTATTGTAAAGAG+TGG | 0.509673 | 4.1:-8414985 | MS.gene70224:intron |
| GGAAATAATATGCAAGAGGA+TGG | 0.510987 | 4.1:-8421328 | MS.gene70224:CDS |
| TGTACAAGCATGATCATGCC+GGG | 0.511394 | 4.1:-8421756 | MS.gene70224:CDS |
| TAGTATTGACAGCTGATCCT+GGG | 0.511525 | 4.1:-8416880 | MS.gene70224:CDS |
| AGCAAAGCATCTCTAACCTT+AGG | 0.513775 | 4.1:+8421253 | None:intergenic |
| TCCAGGAGTCTGTTTCCCAC+TGG | 0.515754 | 4.1:-8417423 | MS.gene70224:intron |
| TGATGAGGAAGAATCTGAAA+AGG | 0.516791 | 4.1:-8421017 | MS.gene70224:CDS |
| GGTTTATTTCAAAGTAGTCC+AGG | 0.519923 | 4.1:-8420524 | MS.gene70224:CDS |
| CATACTGAACCTCCGAGTGC+TGG | 0.520644 | 4.1:-8421451 | MS.gene70224:CDS |
| GAGGATTCTGATGATAATGA+TGG | 0.521082 | 4.1:-8421547 | MS.gene70224:CDS |
| GCACTCTTGCGATCTTCAGT+TGG | 0.521171 | 4.1:+8418218 | None:intergenic |
| ACGTATACCACCTTTAAAGC+AGG | 0.521536 | 4.1:+8412368 | None:intergenic |
| CTTGGCCAGCACCTTTCAAA+GGG | 0.521847 | 4.1:+8416067 | None:intergenic |
| TCTATATACGGGAAGTTACC+TGG | 0.522345 | 4.1:-8415859 | MS.gene70224:CDS |
| CTCCCAAAGTTCACCAGACA+AGG | 0.523180 | 4.1:+8415909 | None:intergenic |
| ACAAGGCATCACTGGCTTTG+GGG | 0.523180 | 4.1:+8415926 | None:intergenic |
| TGACACATCTTATGGGTTAG+TGG | 0.523326 | 4.1:-8418249 | MS.gene70224:CDS |
| GAATGATTCTGAGGACAAAA+CGG | 0.523740 | 4.1:-8420894 | MS.gene70224:CDS |
| AATCCATCTCAGTTCCGTAA+AGG | 0.523781 | 4.1:-8418311 | MS.gene70224:CDS |
| GCCCCTTTACGGAACTGAGA+TGG | 0.525443 | 4.1:+8418308 | None:intergenic |
| CCAGGAGTCTGTTTCCCACT+GGG | 0.526784 | 4.1:-8417422 | MS.gene70224:intron |
| TTGTACAAGCATGATCATGC+CGG | 0.527442 | 4.1:-8421757 | MS.gene70224:CDS |
| CCTGCAGAAAGTAGCACACC+AGG | 0.527564 | 4.1:+8413574 | None:intergenic |
| GATGTCCAGATCGACTGCTC+AGG | 0.529304 | 4.1:-8417038 | MS.gene70224:CDS |
| ATGTCCAAAACCTGATGAAG+AGG | 0.529626 | 4.1:-8420744 | MS.gene70224:CDS |
| TCTTGGCCAGCACCTTTCAA+AGG | 0.531025 | 4.1:+8416066 | None:intergenic |
| CCTCTTGGACTCCCTTTGAA+AGG | 0.531956 | 4.1:-8416078 | MS.gene70224:CDS |
| AACATGACAGTGATCTGGAA+TGG | 0.532257 | 4.1:-8416910 | MS.gene70224:CDS |
| GCATCTCTAACCTTAGGACT+TGG | 0.534395 | 4.1:+8421259 | None:intergenic |
| AGAAAGTAGAAGCGAAGATG+AGG | 0.535822 | 4.1:-8420969 | MS.gene70224:CDS |
| ATAACTCTCAAGCCCTGTCA+AGG | 0.535864 | 4.1:+8421696 | None:intergenic |
| GACCTTCTTCGTCCAATAGG+AGG | 0.537264 | 4.1:+8413409 | None:intergenic |
| CGGAACTGAGATGGATTGAT+CGG | 0.539725 | 4.1:+8418317 | None:intergenic |
| AGTTACCTGGTTGGGACTTG+CGG | 0.540203 | 4.1:-8415846 | MS.gene70224:CDS |
| AGATTGCATTGAAAGTGCAT+TGG | 0.540262 | 4.1:-8421588 | MS.gene70224:CDS |
| GTGATTCTAGTGAAAATGGT+TGG | 0.541443 | 4.1:-8421834 | MS.gene70224:CDS |
| CAGATTGCAGCTACTTTGAT+GGG | 0.541632 | 4.1:-8421499 | MS.gene70224:CDS |
| GACGGTGATTCTGAAAAGGA+TGG | 0.542643 | 4.1:-8421205 | MS.gene70224:CDS |
| CAGATACATGAGTCATTGCC+TGG | 0.543756 | 4.1:+8417008 | None:intergenic |
| GCAGTATGATTATTATCAGA+GGG | 0.545359 | 4.1:-8412151 | MS.gene70224:CDS |
| GCACTCGGAGGTTCAGTATG+AGG | 0.545618 | 4.1:+8421454 | None:intergenic |
| ACATGACAGTGATCTGGAAT+GGG | 0.546782 | 4.1:-8416909 | MS.gene70224:CDS |
| ATTGAAGATTCAGAGCTGCT+GGG | 0.547015 | 4.1:-8420455 | MS.gene70224:CDS |
| AGTGGAAACACGGTATAATG+AGG | 0.548562 | 4.1:-8416957 | MS.gene70224:CDS |
| CTTTCAAAATTAACCCCACC+AGG | 0.550999 | 4.1:+8413345 | None:intergenic |
| TTGAACAAGGAAAGTTCAGA+AGG | 0.551223 | 4.1:+8420614 | None:intergenic |
| ACAAAAGATAAAATTGAAGA+AGG | 0.553041 | 4.1:-8420662 | MS.gene70224:CDS |
| GTGGAAGATGAAGAGAAAGA+TGG | 0.554836 | 4.1:-8420860 | MS.gene70224:CDS |
| AAGGTGAAAGATAGGCATAA+CGG | 0.555281 | 4.1:-8413435 | MS.gene70224:CDS |
| TGTCGTCTTCAGGGTGCACA+CGG | 0.556807 | 4.1:+8420582 | None:intergenic |
| CATTGAAACAATTCCAGATA+CGG | 0.557273 | 4.1:-8414012 | MS.gene70224:intron |
| GAGGAAGAATCTGAAAAGGA+TGG | 0.559190 | 4.1:-8421013 | MS.gene70224:CDS |
| GACTGCTCAGGCAATTGACC+AGG | 0.559330 | 4.1:-8417026 | MS.gene70224:CDS |
| ATGCTATCCAATTCACCTGG+TGG | 0.559536 | 4.1:-8413360 | MS.gene70224:CDS |
| GCCTTGATGCTTGGAGAACA+CGG | 0.559755 | 4.1:-8412173 | MS.gene70224:CDS |
| CTCATCAGATTCACAACTGA+GGG | 0.560276 | 4.1:-8416043 | MS.gene70224:intron |
| TCAGTATGAGGTCGTATCAA+AGG | 0.562686 | 4.1:+8421466 | None:intergenic |
| TACGCAAGGCTTCTATATAC+GGG | 0.562959 | 4.1:-8415870 | MS.gene70224:CDS |
| GTTGTGAATCTGATGAGTCT+TGG | 0.565681 | 4.1:+8416049 | None:intergenic |
| AAAGAAAGATAGAGTACGCA+AGG | 0.566171 | 4.1:-8415884 | MS.gene70224:CDS |
| ATCACAAACTTATCCAATGA+CGG | 0.573446 | 4.1:+8421634 | None:intergenic |
| CAAGGCATCACTGGCTTTGG+GGG | 0.575723 | 4.1:+8415927 | None:intergenic |
| ATTAACACGTGAGCTTCTTG+AGG | 0.576168 | 4.1:-8413310 | MS.gene70224:intron |
| GAACAAACTCCAACGAGTCA+TGG | 0.576648 | 4.1:+8418282 | None:intergenic |
| GGCAGTATGATTATTATCAG+AGG | 0.577932 | 4.1:-8412152 | MS.gene70224:CDS |
| GATGAAAATGACAAAGACTT+CGG | 0.578623 | 4.1:+8421358 | None:intergenic |
| GAGTGGAGATGATTGCAGGC+AGG | 0.580847 | 4.1:-8414968 | MS.gene70224:CDS |
| AACCTCCTATTGGACGAAGA+AGG | 0.582161 | 4.1:-8413411 | MS.gene70224:CDS |
| GCGGTTACGCAGATGAACCC+AGG | 0.583483 | 4.1:-8421885 | MS.gene70224:CDS |
| TCTCAGAAGCTTTCTCAAGG+TGG | 0.584891 | 4.1:-8417160 | MS.gene70224:CDS |
| GCCGTGTTCTCCAAGCATCA+AGG | 0.586685 | 4.1:+8412172 | None:intergenic |
| ACCTGGTTGGGACTTGCGGT+CGG | 0.587456 | 4.1:-8415842 | MS.gene70224:intron |
| ATATCTTCCAACCTAACCCC+AGG | 0.587620 | 4.1:+8416863 | None:intergenic |
| AGATGGATTGATCGGTAATG+GGG | 0.587699 | 4.1:+8418325 | None:intergenic |
| ACGGTGATTCTGAAAAGGAT+GGG | 0.588120 | 4.1:-8421204 | MS.gene70224:CDS |
| GCTATCCAATTCACCTGGTG+GGG | 0.588178 | 4.1:-8413358 | MS.gene70224:CDS |
| AAGTACACAAAACTTCATAA+GGG | 0.588591 | 4.1:+8414051 | None:intergenic |
| ATTGAAGAAGGTACTGCCAA+TGG | 0.589112 | 4.1:-8420650 | MS.gene70224:CDS |
| AACTTATCCAATGACGGACT+AGG | 0.592275 | 4.1:+8421640 | None:intergenic |
| GGACAGTACTAGAGGTGATG+AGG | 0.592828 | 4.1:-8421032 | MS.gene70224:CDS |
| AATCTTCAATTGAACGGTCA+CGG | 0.593996 | 4.1:+8420468 | None:intergenic |
| GTCCATAATGGATAAGCCCA+AGG | 0.594733 | 4.1:+8417094 | None:intergenic |
| GAGTATGGCAGGATATTCCC+TGG | 0.595927 | 4.1:-8413592 | MS.gene70224:CDS |
| TCCATTATGGACAGCACAAG+AGG | 0.599316 | 4.1:-8417083 | MS.gene70224:CDS |
| CTTGTCTGGTGAACTTTGGG+AGG | 0.602026 | 4.1:-8415908 | MS.gene70224:CDS |
| GGTTATGGATTCTGACGCTG+AGG | 0.602322 | 4.1:-8413204 | MS.gene70224:CDS |
| GGGGTCAAAGAGGCAGAAAG+AGG | 0.603341 | 4.1:-8420435 | MS.gene70224:intron |
| AGTTCTCAGAAGCTTTCTCA+AGG | 0.604995 | 4.1:-8417163 | MS.gene70224:CDS |
| GATGTGTCCTCAAGTTCAGA+AGG | 0.606355 | 4.1:-8420947 | MS.gene70224:CDS |
| TCCATCTCAGTTCCGTAAAG+GGG | 0.606691 | 4.1:-8418309 | MS.gene70224:CDS |
| TTCATGCTATCCAATTCACC+TGG | 0.607344 | 4.1:-8413363 | MS.gene70224:CDS |
| AGTGGCAATAGAAGAAGTGA+AGG | 0.607405 | 4.1:-8416789 | MS.gene70224:intron |
| TCGCAAGAGTGCTCTTCAAG+AGG | 0.608480 | 4.1:-8418207 | MS.gene70224:intron |
| ACTGAACCTCCGAGTGCTGG+AGG | 0.608815 | 4.1:-8421448 | MS.gene70224:CDS |
| CAGAGCTGCTGGGGTCAAAG+AGG | 0.609247 | 4.1:-8420445 | MS.gene70224:CDS |
| GATAGTAGGGACAGTACTAG+AGG | 0.616025 | 4.1:-8421040 | MS.gene70224:CDS |
| TGTATACTCTTCCCTTGACA+GGG | 0.616083 | 4.1:-8421708 | MS.gene70224:CDS |
| ACCGACCGCAAGTCCCAACC+AGG | 0.617466 | 4.1:+8415841 | None:intergenic |
| ACCGGGAAATAATATGCAAG+AGG | 0.621704 | 4.1:-8421332 | MS.gene70224:CDS |
| TGAATCTGTCAGTGGAAACA+CGG | 0.621890 | 4.1:-8416967 | MS.gene70224:CDS |
| TAACTCTCAAGCCCTGTCAA+GGG | 0.621996 | 4.1:+8421697 | None:intergenic |
| GCTCTGAATCTTCAATTGAA+CGG | 0.622562 | 4.1:+8420462 | None:intergenic |
| TATACGGGAAGTTACCTGGT+TGG | 0.623432 | 4.1:-8415855 | MS.gene70224:CDS |
| TGGAATTGTTTCAATGAGAG+CGG | 0.625727 | 4.1:+8414019 | None:intergenic |
| TCCATAATGGATAAGCCCAA+GGG | 0.626062 | 4.1:+8417095 | None:intergenic |
| CGTATACCACCTTTAAAGCA+GGG | 0.629980 | 4.1:+8412369 | None:intergenic |
| TTGCCACTGTACTTGGAACA+CGG | 0.630176 | 4.1:+8416804 | None:intergenic |
| AGCAAAGGTGATGATGAGCT+CGG | 0.630281 | 4.1:-8421157 | MS.gene70224:CDS |
| CAGCATGCTTGCGACAAGTG+AGG | 0.631589 | 4.1:+8413031 | None:intergenic |
| CTATTCTCATCAGGAGATAG+CGG | 0.633292 | 4.1:+8421301 | None:intergenic |
| GATACATGCCCTTTCCCAGT+GGG | 0.635735 | 4.1:+8417408 | None:intergenic |
| TTGAAGATTCAGAGCTGCTG+GGG | 0.639576 | 4.1:-8420454 | MS.gene70224:CDS |
| TGTTAGCCTGAATCTGTCAG+TGG | 0.639661 | 4.1:-8416975 | MS.gene70224:CDS |
| AGGGGCTTACCATGACTCGT+TGG | 0.641373 | 4.1:-8418291 | MS.gene70224:CDS |
| GTTATGGATTCTGACGCTGA+GGG | 0.643796 | 4.1:-8413203 | MS.gene70224:CDS |
| AGGATTCTGATGATAATGAT+GGG | 0.643851 | 4.1:-8421546 | MS.gene70224:CDS |
| CAGCTACTTTGATGGGTGAG+TGG | 0.644007 | 4.1:-8421492 | MS.gene70224:CDS |
| TGACAAAGACTTCGGCGGTG+AGG | 0.645891 | 4.1:+8421366 | None:intergenic |
| GGATAGTAAGAATGATTCTG+AGG | 0.647050 | 4.1:-8420903 | MS.gene70224:CDS |
| AAAGCGTCTCCATTTGCCAA+AGG | 0.648853 | 4.1:+8417133 | None:intergenic |
| AAGTCAGCGGATAAAGATGA+CGG | 0.652675 | 4.1:-8421223 | MS.gene70224:CDS |
| GTGGAAACACGGTATAATGA+GGG | 0.653694 | 4.1:-8416956 | MS.gene70224:CDS |
| AGAAGGTACTGCCAATGGCG+AGG | 0.653713 | 4.1:-8420645 | MS.gene70224:CDS |
| CGGTTACGCAGATGAACCCA+GGG | 0.658304 | 4.1:-8421884 | MS.gene70224:CDS |
| AGTATTGACAGCTGATCCTG+GGG | 0.661051 | 4.1:-8416879 | MS.gene70224:CDS |
| CCTTTCAAAGGGAGTCCAAG+AGG | 0.663061 | 4.1:+8416078 | None:intergenic |
| GATCAATGTACATGTAACAG+AGG | 0.665912 | 4.1:-8418058 | MS.gene70224:CDS |
| ACAGAGGTTCAGAATACTGG+AGG | 0.670222 | 4.1:-8418042 | MS.gene70224:intron |
| CGGTTATTAGGGTTCGCTCG+CGG | 0.673119 | 4.1:-8421904 | MS.gene70224:CDS |
| GCAAAGATAATCCCGCACCC+CGG | 0.673856 | 4.1:+8421738 | None:intergenic |
| CGATACATGCCCTTTCCCAG+TGG | 0.674794 | 4.1:+8417407 | None:intergenic |
| GCTAATAAGAGAAAGAACCA+AGG | 0.679649 | 4.1:+8412200 | None:intergenic |
| TCATAAGGGCGCAGCCAAAG+CGG | 0.681437 | 4.1:+8414065 | None:intergenic |
| GAAAATGACAAAGACTTCGG+CGG | 0.687367 | 4.1:+8421361 | None:intergenic |
| TTGAGGATAAAGCACCACCT+CGG | 0.687394 | 4.1:-8416841 | MS.gene70224:CDS |
| ACTCATCAGATTCACAACTG+AGG | 0.689053 | 4.1:-8416044 | MS.gene70224:CDS |
| CCATAATGGATAAGCCCAAG+GGG | 0.695536 | 4.1:+8417096 | None:intergenic |
| GTATGAGGTCGTATCAAAGG+CGG | 0.697048 | 4.1:+8421469 | None:intergenic |
| AATGAAAATAGCAATAACGG+TGG | 0.702382 | 4.1:-8420545 | MS.gene70224:CDS |
| GTACAAGCATGATCATGCCG+GGG | 0.711579 | 4.1:-8421755 | MS.gene70224:CDS |
| GATGGATTGATCGGTAATGG+GGG | 0.711741 | 4.1:+8418326 | None:intergenic |
| TCGCCGTGTTCCAAGTACAG+TGG | 0.712754 | 4.1:-8416807 | MS.gene70224:CDS |
| CTGCAGAAAGTAGCACACCA+GGG | 0.720700 | 4.1:+8413575 | None:intergenic |
| CATAATGGATAAGCCCAAGG+GGG | 0.768010 | 4.1:+8417097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 8412131 | 8421932 | 8412131 | ID=MS.gene70224 |
| chr4.1 | mRNA | 8412131 | 8421932 | 8412131 | ID=MS.gene70224.t1;Parent=MS.gene70224 |
| chr4.1 | exon | 8420436 | 8421932 | 8420436 | ID=MS.gene70224.t1.exon1;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8420436 | 8421932 | 8420436 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8418208 | 8418396 | 8418208 | ID=MS.gene70224.t1.exon2;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8418208 | 8418396 | 8418208 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8418043 | 8418091 | 8418043 | ID=MS.gene70224.t1.exon3;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8418043 | 8418091 | 8418043 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8417308 | 8417440 | 8417308 | ID=MS.gene70224.t1.exon4;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8417308 | 8417440 | 8417308 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8416790 | 8417204 | 8416790 | ID=MS.gene70224.t1.exon5;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8416790 | 8417204 | 8416790 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8416044 | 8416124 | 8416044 | ID=MS.gene70224.t1.exon6;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8416044 | 8416124 | 8416044 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8415843 | 8415962 | 8415843 | ID=MS.gene70224.t1.exon7;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8415843 | 8415962 | 8415843 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8414932 | 8415001 | 8414932 | ID=MS.gene70224.t1.exon8;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8414932 | 8415001 | 8414932 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8414013 | 8414110 | 8414013 | ID=MS.gene70224.t1.exon9;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8414013 | 8414110 | 8414013 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8413826 | 8413930 | 8413826 | ID=MS.gene70224.t1.exon10;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8413826 | 8413930 | 8413826 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8413575 | 8413628 | 8413575 | ID=MS.gene70224.t1.exon11;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8413575 | 8413628 | 8413575 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8413311 | 8413454 | 8413311 | ID=MS.gene70224.t1.exon12;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8413311 | 8413454 | 8413311 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8413172 | 8413225 | 8413172 | ID=MS.gene70224.t1.exon13;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8413172 | 8413225 | 8413172 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8412999 | 8413073 | 8412999 | ID=MS.gene70224.t1.exon14;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8412999 | 8413073 | 8412999 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8412320 | 8412403 | 8412320 | ID=MS.gene70224.t1.exon15;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8412320 | 8412403 | 8412320 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| chr4.1 | exon | 8412131 | 8412232 | 8412131 | ID=MS.gene70224.t1.exon16;Parent=MS.gene70224.t1 |
| chr4.1 | CDS | 8412131 | 8412232 | 8412131 | ID=cds.MS.gene70224.t1;Parent=MS.gene70224.t1 |
| Gene Sequence |
| Protein sequence |
