Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87467.t1 | XP_013446398.1 | 100 | 205 | 0 | 0 | 25 | 229 | 22 | 226 | 1.60E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87467.t1 | Q9LFF9 | 85.2 | 196 | 28 | 1 | 34 | 229 | 22 | 216 | 3.1e-95 | 349.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87467.t1 | I3SMR6 | 100.0 | 205 | 0 | 0 | 25 | 229 | 22 | 226 | 1.1e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene87467 | 0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene87467 | 0.848838 | 4.75E-60 | -1.69E-46 |
| MS.gene051244 | MS.gene87467 | 0.842936 | 1.91E-58 | -1.69E-46 |
| MS.gene051552 | MS.gene87467 | -0.801663 | 8.10E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene87467 | 0.813026 | 3.15E-51 | -1.69E-46 |
| MS.gene051940 | MS.gene87467 | -0.807369 | 5.23E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene87467 | 0.822803 | 1.95E-53 | -1.69E-46 |
| MS.gene052872 | MS.gene87467 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene053330 | MS.gene87467 | 0.839387 | 1.63E-57 | -1.69E-46 |
| MS.gene054343 | MS.gene87467 | 0.876854 | 1.00E-68 | -1.69E-46 |
| MS.gene054344 | MS.gene87467 | 0.84163 | 4.23E-58 | -1.69E-46 |
| MS.gene054884 | MS.gene87467 | -0.853327 | 2.57E-61 | -1.69E-46 |
| MS.gene055370 | MS.gene87467 | 0.819478 | 1.14E-52 | -1.69E-46 |
| MS.gene056351 | MS.gene87467 | 0.817273 | 3.59E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene87467 | 0.872439 | 3.18E-67 | -1.69E-46 |
| MS.gene056664 | MS.gene87467 | 0.858922 | 5.90E-63 | -1.69E-46 |
| MS.gene057196 | MS.gene87467 | 0.863776 | 1.96E-64 | -1.69E-46 |
| MS.gene057332 | MS.gene87467 | 0.859531 | 3.88E-63 | -1.69E-46 |
| MS.gene057658 | MS.gene87467 | 0.806832 | 6.79E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene87467 | 0.883993 | 2.80E-71 | -1.69E-46 |
| MS.gene058838 | MS.gene87467 | 0.823921 | 1.07E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene87467 | 0.832376 | 9.79E-56 | -1.69E-46 |
| MS.gene059061 | MS.gene87467 | -0.804417 | 2.18E-49 | -1.69E-46 |
| MS.gene05914 | MS.gene87467 | 0.835865 | 1.31E-56 | -1.69E-46 |
| MS.gene059512 | MS.gene87467 | 0.872843 | 2.33E-67 | -1.69E-46 |
| MS.gene061231 | MS.gene87467 | 0.867627 | 1.19E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87467.t1 | MTR_8g077180 | 97.817 | 229 | 2 | 1 | 1 | 229 | 1 | 226 | 1.58e-166 | 458 |
| MS.gene87467.t1 | MTR_5g020840 | 80.093 | 216 | 39 | 2 | 14 | 229 | 2 | 213 | 2.73e-128 | 361 |
| MS.gene87467.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 22 | 229 | 45 | 248 | 7.63e-124 | 351 |
| MS.gene87467.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 22 | 229 | 26 | 229 | 1.35e-123 | 350 |
| MS.gene87467.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 22 | 229 | 49 | 252 | 1.38e-123 | 350 |
| MS.gene87467.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 22 | 229 | 13 | 216 | 2.92e-123 | 348 |
| MS.gene87467.t1 | MTR_1g068810 | 80.288 | 208 | 37 | 2 | 22 | 229 | 21 | 224 | 3.07e-123 | 348 |
| MS.gene87467.t1 | MTR_8g024050 | 80.296 | 203 | 39 | 1 | 27 | 229 | 56 | 257 | 5.52e-123 | 349 |
| MS.gene87467.t1 | MTR_7g118340 | 81.000 | 200 | 37 | 1 | 30 | 229 | 21 | 219 | 1.07e-121 | 345 |
| MS.gene87467.t1 | MTR_1g068810 | 70.763 | 236 | 37 | 3 | 22 | 229 | 49 | 280 | 1.71e-117 | 336 |
| MS.gene87467.t1 | MTR_1g068810 | 70.763 | 236 | 37 | 3 | 22 | 229 | 13 | 244 | 4.30e-117 | 334 |
| MS.gene87467.t1 | MTR_1g096640 | 76.077 | 209 | 38 | 3 | 8 | 216 | 6 | 202 | 3.32e-114 | 326 |
| MS.gene87467.t1 | MTR_1g068810 | 71.300 | 223 | 32 | 3 | 22 | 216 | 13 | 231 | 3.20e-111 | 318 |
| MS.gene87467.t1 | MTR_8g024050 | 84.568 | 162 | 24 | 1 | 27 | 188 | 11 | 171 | 3.04e-102 | 295 |
| MS.gene87467.t1 | MTR_1g112450 | 67.308 | 52 | 15 | 1 | 148 | 197 | 63 | 114 | 1.26e-17 | 77.8 |
| MS.gene87467.t1 | MTR_2g010430 | 31.050 | 219 | 114 | 8 | 12 | 198 | 36 | 249 | 4.21e-17 | 78.6 |
| MS.gene87467.t1 | MTR_1g112430 | 89.286 | 28 | 3 | 0 | 149 | 176 | 39 | 66 | 2.86e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87467.t1 | AT3G53620 | 80.282 | 213 | 38 | 2 | 17 | 229 | 8 | 216 | 1.62e-125 | 354 |
| MS.gene87467.t1 | AT1G01050 | 81.000 | 200 | 37 | 1 | 30 | 229 | 14 | 212 | 2.18e-123 | 348 |
| MS.gene87467.t1 | AT1G01050 | 81.000 | 200 | 37 | 1 | 30 | 229 | 14 | 212 | 2.18e-123 | 348 |
| MS.gene87467.t1 | AT2G46860 | 75.566 | 221 | 47 | 2 | 9 | 229 | 3 | 216 | 1.45e-121 | 344 |
| MS.gene87467.t1 | AT2G18230 | 79.500 | 200 | 40 | 1 | 30 | 229 | 20 | 218 | 5.96e-119 | 338 |
| MS.gene87467.t1 | AT4G01480 | 78.000 | 200 | 43 | 1 | 30 | 229 | 18 | 216 | 1.83e-117 | 334 |
| MS.gene87467.t1 | AT4G01480 | 78.000 | 200 | 43 | 1 | 30 | 229 | 18 | 216 | 1.83e-117 | 334 |
| MS.gene87467.t1 | AT5G09650 | 31.937 | 191 | 105 | 6 | 30 | 198 | 72 | 259 | 5.46e-17 | 78.6 |
Find 52 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTCATTGTTGTTAT+TGG | 0.218964 | 8.3:-26920908 | None:intergenic |
| TTCCTTCGTGCCCGTGCTAT+TGG | 0.251156 | 8.3:+26922260 | MS.gene87467:CDS |
| TCATCTTCACAAAGGGTTCT+TGG | 0.252123 | 8.3:-26922083 | None:intergenic |
| CAAGAAAAGTGGACTTATTA+AGG | 0.286810 | 8.3:+26921403 | MS.gene87467:CDS |
| TTATTGTAGGTGGTTGAAAT+TGG | 0.337416 | 8.3:+26921350 | MS.gene87467:intron |
| CTTTCATTCAACGCAACAAC+TGG | 0.383599 | 8.3:-26920988 | None:intergenic |
| CTATATGCTGCTTATGTAGT+TGG | 0.409956 | 8.3:+26923447 | MS.gene87467:CDS |
| TGAAATTAGAAGATTCTTTG+AGG | 0.414965 | 8.3:+26923081 | MS.gene87467:CDS |
| CTTATGTAGTTGGAAACTTA+AGG | 0.419658 | 8.3:+26923457 | MS.gene87467:CDS |
| TCCTTGTAATGGCGGTACTC+AGG | 0.424425 | 8.3:-26923028 | None:intergenic |
| GTTGTCTATCCACATAACTA+TGG | 0.433655 | 8.3:+26922053 | MS.gene87467:CDS |
| ACCAGCTGAAGCTGCTGTTA+AGG | 0.443366 | 8.3:+26923299 | MS.gene87467:CDS |
| AAGCAAGGTTAAGTATGAAC+TGG | 0.446810 | 8.3:+26921379 | MS.gene87467:CDS |
| CCATGGCATGACTTAGAGAT+TGG | 0.459125 | 8.3:+26921054 | MS.gene87467:CDS |
| GCCTTAACAGCAGCTTCAGC+TGG | 0.472264 | 8.3:-26923300 | None:intergenic |
| GCTCCTTGATGTCCTTGTAA+TGG | 0.493887 | 8.3:-26923039 | None:intergenic |
| TGAAAGAATACTTTCTTCCA+TGG | 0.509143 | 8.3:+26921005 | MS.gene87467:CDS |
| GGGATCTTCATCTTCACAAA+GGG | 0.509751 | 8.3:-26922090 | None:intergenic |
| TTGAAAACAGATGGAGCTCC+TGG | 0.514131 | 8.3:-26921170 | None:intergenic |
| CCCTGAGTACCGCCATTACA+AGG | 0.516953 | 8.3:+26923027 | MS.gene87467:CDS |
| TTATTACCTGCATCAGAACT+AGG | 0.520797 | 8.3:-26922121 | None:intergenic |
| CTTACACAATTGAAAACAGA+TGG | 0.534311 | 8.3:-26921179 | None:intergenic |
| AGCATCTTTCTTATCAGCCA+TGG | 0.534889 | 8.3:-26921022 | None:intergenic |
| GAATAGGAGCCTGTGATACC+TGG | 0.543718 | 8.3:+26922233 | MS.gene87467:intron |
| CCTTGTAATGGCGGTACTCA+GGG | 0.545314 | 8.3:-26923027 | None:intergenic |
| TTGTGAAGATGAAGATCCCT+TGG | 0.546662 | 8.3:+26922094 | MS.gene87467:CDS |
| AAGATGCTGCTGCTCATCCA+TGG | 0.549543 | 8.3:+26921037 | MS.gene87467:CDS |
| TATGAACTGGACAAGAAAAG+TGG | 0.554656 | 8.3:+26921392 | MS.gene87467:CDS |
| GCTGAATAACGTAGGTTGAT+CGG | 0.562129 | 8.3:+26922015 | MS.gene87467:intron |
| CCAATCTCTAAGTCATGCCA+TGG | 0.565311 | 8.3:-26921054 | None:intergenic |
| TGAAATTGGCAAAGGAAGCA+AGG | 0.565798 | 8.3:+26921364 | MS.gene87467:CDS |
| GGAATAAAACCATAGTTATG+TGG | 0.568906 | 8.3:-26922062 | None:intergenic |
| GGATGTCCTAGTTCTGATGC+AGG | 0.576726 | 8.3:+26922115 | MS.gene87467:CDS |
| AATCCTATCACAGGGAGAGA+AGG | 0.578410 | 8.3:+26922973 | MS.gene87467:intron |
| TTTCAGCAAGCCTGTGTGGA+GGG | 0.579237 | 8.3:-26923063 | None:intergenic |
| AGGAAACAACCAGGTATCAC+AGG | 0.592281 | 8.3:-26922242 | None:intergenic |
| AGGCATCAATCCAATAGCAC+GGG | 0.596445 | 8.3:-26922270 | None:intergenic |
| CATCAGAACTAGGACATCCA+AGG | 0.602800 | 8.3:-26922111 | None:intergenic |
| TAGGCATCAATCCAATAGCA+CGG | 0.604153 | 8.3:-26922271 | None:intergenic |
| ATCCAATAGCACGGGCACGA+AGG | 0.604284 | 8.3:-26922262 | None:intergenic |
| CTAATTTCAGCAAGCCTGTG+TGG | 0.605088 | 8.3:-26923067 | None:intergenic |
| TAGGTGGTTGAAATTGGCAA+AGG | 0.605186 | 8.3:+26921356 | MS.gene87467:intron |
| CCGCCATTACAAGGACATCA+AGG | 0.609112 | 8.3:+26923036 | MS.gene87467:CDS |
| AGGGATCTTCATCTTCACAA+AGG | 0.609244 | 8.3:-26922091 | None:intergenic |
| TCATTCAACGCAACAACTGG+AGG | 0.618816 | 8.3:-26920985 | None:intergenic |
| ATTTCAGCAAGCCTGTGTGG+AGG | 0.626630 | 8.3:-26923064 | None:intergenic |
| CCTTGATGTCCTTGTAATGG+CGG | 0.630944 | 8.3:-26923036 | None:intergenic |
| GAACAAAATAGTCAATGTTG+AGG | 0.634181 | 8.3:+26923269 | MS.gene87467:CDS |
| ATCAGAACTAGGACATCCAA+GGG | 0.638473 | 8.3:-26922110 | None:intergenic |
| TCAAGGAGCTCCCTCCACAC+AGG | 0.645382 | 8.3:+26923053 | MS.gene87467:CDS |
| CGGGCACGAAGGAAACAACC+AGG | 0.651968 | 8.3:-26922251 | None:intergenic |
| ATTGATGCCTATGATTGACC+AGG | 0.665376 | 8.3:+26922283 | MS.gene87467:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTAAATCATTTGTT+AGG | + | chr8.3:26921854-26921873 | MS.gene87467:intron | 15.0% |
| !! | AAAATATCAGATACAATCTA+GGG | - | chr8.3:26922431-26922450 | None:intergenic | 20.0% |
| !! | AAACTTAGACATGTAAAATA+TGG | - | chr8.3:26921612-26921631 | None:intergenic | 20.0% |
| !! | AACGATTGAAAAGTTATAAT+TGG | - | chr8.3:26921446-26921465 | None:intergenic | 20.0% |
| !! | ACGATTGAAAAGTTATAATT+GGG | - | chr8.3:26921445-26921464 | None:intergenic | 20.0% |
| !! | ATAAATCATCTATGAACATA+TGG | - | chr8.3:26923149-26923168 | None:intergenic | 20.0% |
| !! | ATGAATCATTTGATCATTAA+TGG | - | chr8.3:26923378-26923397 | None:intergenic | 20.0% |
| !! | ATTGGTTATGTTTAATGTTT+AGG | + | chr8.3:26921643-26921662 | MS.gene87467:intron | 20.0% |
| !! | GTTTCATTTATATTATAGAC+AGG | + | chr8.3:26921676-26921695 | MS.gene87467:intron | 20.0% |
| !! | TAAAATATCAGATACAATCT+AGG | - | chr8.3:26922432-26922451 | None:intergenic | 20.0% |
| !! | TCCTGAATTTATGAAAATAA+TGG | - | chr8.3:26921150-26921169 | None:intergenic | 20.0% |
| !!! | AAATGAATCAACCATATTTT+CGG | - | chr8.3:26921483-26921502 | None:intergenic | 20.0% |
| !!! | ACCATTATTTTCATAAATTC+AGG | + | chr8.3:26921146-26921165 | MS.gene87467:intron | 20.0% |
| !!! | TTGAAACTTGTATTTTGAAT+AGG | + | chr8.3:26922217-26922236 | MS.gene87467:intron | 20.0% |
| !!! | TTTTACATGTCTAAGTTTTT+AGG | + | chr8.3:26921614-26921633 | MS.gene87467:intron | 20.0% |
| ! | AAACGAAGACTTAATAAATG+TGG | + | chr8.3:26921269-26921288 | MS.gene87467:intron | 25.0% |
| ! | AAAGTGAATTCTGTTATTGT+AGG | + | chr8.3:26921337-26921356 | MS.gene87467:intron | 25.0% |
| ! | AAGAGTAATATGATTGGAAT+AGG | + | chr8.3:26922508-26922527 | MS.gene87467:intron | 25.0% |
| ! | AATTCACTTTACACCATTAA+TGG | - | chr8.3:26921327-26921346 | None:intergenic | 25.0% |
| ! | ACTCTTAAGCTAAAATTGTA+AGG | - | chr8.3:26922494-26922513 | None:intergenic | 25.0% |
| ! | ATACGTCTTCACAATTAATT+TGG | - | chr8.3:26921574-26921593 | None:intergenic | 25.0% |
| ! | ATTCACTTTACACCATTAAT+GGG | - | chr8.3:26921326-26921345 | None:intergenic | 25.0% |
| ! | CATTTGATGGGAAAATATAA+AGG | + | chr8.3:26921498-26921517 | MS.gene87467:intron | 25.0% |
| ! | CTCTTAAGCTAAAATTGTAA+GGG | - | chr8.3:26922493-26922512 | None:intergenic | 25.0% |
| ! | GTAAGGGATTAAAATGTTAA+TGG | - | chr8.3:26922477-26922496 | None:intergenic | 25.0% |
| ! | TAATCTTCATTTCAAATCAC+AGG | - | chr8.3:26922403-26922422 | None:intergenic | 25.0% |
| ! | TAGCTTAAGAGTAATATGAT+TGG | + | chr8.3:26922502-26922521 | MS.gene87467:intron | 25.0% |
| ! | TGAAATTAGAAGATTCTTTG+AGG | + | chr8.3:26923081-26923100 | MS.gene87467:CDS | 25.0% |
| !! | AATATGGTTGATTCATTTGA+TGG | + | chr8.3:26921485-26921504 | MS.gene87467:intron | 25.0% |
| !! | ATATGGTTGATTCATTTGAT+GGG | + | chr8.3:26921486-26921505 | MS.gene87467:intron | 25.0% |
| !! | TTCTTGTTCATTGTTGTTAT+TGG | - | chr8.3:26920911-26920930 | None:intergenic | 25.0% |
| !!! | ATAAAGGCTGTTTCTTTTAA+GGG | + | chr8.3:26921514-26921533 | MS.gene87467:intron | 25.0% |
| !!! | CAATGGTAAAAGCATTTAAA+GGG | - | chr8.3:26923182-26923201 | None:intergenic | 25.0% |
| !!! | CTAGTTTTAAAGCTAGTTTA+TGG | + | chr8.3:26922155-26922174 | MS.gene87467:intron | 25.0% |
| !!! | TAAGTTTTTAGGAGTAAGAT+TGG | + | chr8.3:26921625-26921644 | MS.gene87467:intron | 25.0% |
| !!! | TATAAAGGCTGTTTCTTTTA+AGG | + | chr8.3:26921513-26921532 | MS.gene87467:intron | 25.0% |
| !!! | TCAATGGTAAAAGCATTTAA+AGG | - | chr8.3:26923183-26923202 | None:intergenic | 25.0% |
| AAATTGTTGCACGCATTATT+TGG | + | chr8.3:26922578-26922597 | MS.gene87467:intron | 30.0% | |
| AAGCATTATCTACATAAAGC+AGG | - | chr8.3:26921939-26921958 | None:intergenic | 30.0% | |
| AATAGCACTAACAGAATCAA+TGG | - | chr8.3:26923199-26923218 | None:intergenic | 30.0% | |
| AATTATACTTCAACTCTACG+TGG | + | chr8.3:26922373-26922392 | MS.gene87467:intron | 30.0% | |
| AGCTATGTACTTCAAATTGA+AGG | + | chr8.3:26921762-26921781 | MS.gene87467:intron | 30.0% | |
| AGTTCTTCATTGCAAATAAC+AGG | - | chr8.3:26923114-26923133 | None:intergenic | 30.0% | |
| ATATAGATCCCTGCAAAAAA+GGG | - | chr8.3:26923433-26923452 | None:intergenic | 30.0% | |
| ATTTGGCAGAATTGTAGAAA+TGG | - | chr8.3:26921557-26921576 | None:intergenic | 30.0% | |
| CAAATACTTTGAATGCATTG+TGG | + | chr8.3:26921719-26921738 | MS.gene87467:intron | 30.0% | |
| CCAATGAGAGTAAAAGAAAA+TGG | + | chr8.3:26922547-26922566 | MS.gene87467:intron | 30.0% | |
| CTCAATAGTTATTGAGCTAT+AGG | + | chr8.3:26921891-26921910 | MS.gene87467:intron | 30.0% | |
| CTGAAGCATAACTAACAAAT+GGG | + | chr8.3:26921993-26922012 | MS.gene87467:intron | 30.0% | |
| CTTACACAATTGAAAACAGA+TGG | - | chr8.3:26921182-26921201 | None:intergenic | 30.0% | |
| CTTATGTAGTTGGAAACTTA+AGG | + | chr8.3:26923457-26923476 | MS.gene87467:CDS | 30.0% | |
| GAACAAAATAGTCAATGTTG+AGG | + | chr8.3:26923269-26923288 | MS.gene87467:CDS | 30.0% | |
| GCTTTATGTAGATAATGCTT+TGG | + | chr8.3:26921939-26921958 | MS.gene87467:intron | 30.0% | |
| GGAATAAAACCATAGTTATG+TGG | - | chr8.3:26922065-26922084 | None:intergenic | 30.0% | |
| TAACATTTCTGTCCCATTAA+TGG | + | chr8.3:26921311-26921330 | MS.gene87467:intron | 30.0% | |
| TAAGGACACACAACATATAT+GGG | - | chr8.3:26923222-26923241 | None:intergenic | 30.0% | |
| TATTGAGCTATAGGATGTTT+CGG | + | chr8.3:26921900-26921919 | MS.gene87467:intron | 30.0% | |
| TATTTGGCAATACCATTAGA+GGG | + | chr8.3:26922594-26922613 | MS.gene87467:intron | 30.0% | |
| TGAAAGAATACTTTCTTCCA+TGG | + | chr8.3:26921005-26921024 | MS.gene87467:CDS | 30.0% | |
| TTAAGGACACACAACATATA+TGG | - | chr8.3:26923223-26923242 | None:intergenic | 30.0% | |
| TTATTGTAGGTGGTTGAAAT+TGG | + | chr8.3:26921350-26921369 | MS.gene87467:intron | 30.0% | |
| TTATTTGGCAATACCATTAG+AGG | + | chr8.3:26922593-26922612 | MS.gene87467:intron | 30.0% | |
| TTCATCTGATTCCGAAAATA+TGG | + | chr8.3:26921469-26921488 | MS.gene87467:intron | 30.0% | |
| ! | ATTTTCATAAATTCAGGACC+AGG | + | chr8.3:26921152-26921171 | MS.gene87467:intron | 30.0% |
| ! | CAAGAAAAGTGGACTTATTA+AGG | + | chr8.3:26921403-26921422 | MS.gene87467:CDS | 30.0% |
| ! | CCATTTTCTTTTACTCTCAT+TGG | - | chr8.3:26922550-26922569 | None:intergenic | 30.0% |
| ! | TCTGAAGCATAACTAACAAA+TGG | + | chr8.3:26921992-26922011 | MS.gene87467:intron | 30.0% |
| !! | ATGCTTTGACTTTTCCAATT+TGG | + | chr8.3:26922877-26922896 | MS.gene87467:intron | 30.0% |
| !! | TAAAAGCATTTAAAGGGTCA+TGG | - | chr8.3:26923176-26923195 | None:intergenic | 30.0% |
| !! | TGCTTTGACTTTTCCAATTT+GGG | + | chr8.3:26922878-26922897 | MS.gene87467:intron | 30.0% |
| !! | TTAATGTTTAGGTTGCAAAG+TGG | + | chr8.3:26921654-26921673 | MS.gene87467:intron | 30.0% |
| AACAGCTTAAGCTTATGAGT+AGG | - | chr8.3:26922646-26922665 | None:intergenic | 35.0% | |
| AAGCAAGGTTAAGTATGAAC+TGG | + | chr8.3:26921379-26921398 | MS.gene87467:CDS | 35.0% | |
| AATACCATTAGAGGGATCAA+CGG | + | chr8.3:26922602-26922621 | MS.gene87467:intron | 35.0% | |
| ACAGATAAAAGCGAATGCAA+TGG | + | chr8.3:26922853-26922872 | MS.gene87467:intron | 35.0% | |
| CATATAGATCCCTGCAAAAA+AGG | - | chr8.3:26923434-26923453 | None:intergenic | 35.0% | |
| CATATTTCAAGCACCCAAAT+TGG | - | chr8.3:26922894-26922913 | None:intergenic | 35.0% | |
| GAGTAAAAGAAAATGGTGCA+AGG | + | chr8.3:26922554-26922573 | MS.gene87467:intron | 35.0% | |
| GGAAAAGTTAAAGCATGTCA+TGG | - | chr8.3:26922945-26922964 | None:intergenic | 35.0% | |
| GTAAAATATGGTGCTTGCAA+AGG | - | chr8.3:26921600-26921619 | None:intergenic | 35.0% | |
| GTGAATTCTGTTATTGTAGG+TGG | + | chr8.3:26921340-26921359 | MS.gene87467:intron | 35.0% | |
| GTTGTCTATCCACATAACTA+TGG | + | chr8.3:26922053-26922072 | MS.gene87467:CDS | 35.0% | |
| TATAGATCCCTGCAAAAAAG+GGG | - | chr8.3:26923432-26923451 | None:intergenic | 35.0% | |
| TATGAACTGGACAAGAAAAG+TGG | + | chr8.3:26921392-26921411 | MS.gene87467:CDS | 35.0% | |
| TTATTACCTGCATCAGAACT+AGG | - | chr8.3:26922124-26922143 | None:intergenic | 35.0% | |
| TTGTCTAGTGTGGAAAGTTA+AGG | - | chr8.3:26923240-26923259 | None:intergenic | 35.0% | |
| TTTGAATAATGCAACCAGCA+TGG | + | chr8.3:26922703-26922722 | MS.gene87467:intron | 35.0% | |
| ! | ACTTTTACCTGGTCAATCAT+AGG | - | chr8.3:26922293-26922312 | None:intergenic | 35.0% |
| ! | AGAATGTCTGGTTCATGATT+TGG | - | chr8.3:26922767-26922786 | None:intergenic | 35.0% |
| ! | CATTTGTTAGGTGTCTTTGT+CGG | + | chr8.3:26921866-26921885 | MS.gene87467:intron | 35.0% |
| ! | CTATATGCTGCTTATGTAGT+TGG | + | chr8.3:26923447-26923466 | MS.gene87467:CDS | 35.0% |
| ! | CTTCAAATTGAAGGTGTGTT+TGG | + | chr8.3:26921771-26921790 | MS.gene87467:intron | 35.0% |
| ! | GTAGATAATGCTTTGGTTTC+TGG | + | chr8.3:26921946-26921965 | MS.gene87467:intron | 35.0% |
| !! | GTGTTTGGTGTTCAATACAT+CGG | + | chr8.3:26921786-26921805 | MS.gene87467:intron | 35.0% |
| !! | TAGTAAGCTTCTAGAATGTC+TGG | - | chr8.3:26922779-26922798 | None:intergenic | 35.0% |
| ACAAAGCATAGTAGCTCACA+TGG | - | chr8.3:26923337-26923356 | None:intergenic | 40.0% | |
| AGCATCTTTCTTATCAGCCA+TGG | - | chr8.3:26921025-26921044 | None:intergenic | 40.0% | |
| AGGGATCTTCATCTTCACAA+AGG | - | chr8.3:26922094-26922113 | None:intergenic | 40.0% | |
| ATACCATTAGAGGGATCAAC+GGG | + | chr8.3:26922603-26922622 | MS.gene87467:intron | 40.0% | |
| ATCAGAACTAGGACATCCAA+GGG | - | chr8.3:26922113-26922132 | None:intergenic | 40.0% | |
| ATTGATGCCTATGATTGACC+AGG | + | chr8.3:26922283-26922302 | MS.gene87467:CDS | 40.0% | |
| CTCATTCTTCTTGTCTAGTG+TGG | - | chr8.3:26923250-26923269 | None:intergenic | 40.0% | |
| CTGAATGCAATCACATGTGT+TGG | - | chr8.3:26921826-26921845 | None:intergenic | 40.0% | |
| CTTTCATTCAACGCAACAAC+TGG | - | chr8.3:26920991-26921010 | None:intergenic | 40.0% | |
| GACAAAAGTTTGATCCATGC+TGG | - | chr8.3:26922720-26922739 | None:intergenic | 40.0% | |
| GGGATCTTCATCTTCACAAA+GGG | - | chr8.3:26922093-26922112 | None:intergenic | 40.0% | |
| TAGGCATCAATCCAATAGCA+CGG | - | chr8.3:26922274-26922293 | None:intergenic | 40.0% | |
| TAGGTGGTTGAAATTGGCAA+AGG | + | chr8.3:26921356-26921375 | MS.gene87467:intron | 40.0% | |
| TCATCTTCACAAAGGGTTCT+TGG | - | chr8.3:26922086-26922105 | None:intergenic | 40.0% | |
| TCCCTGTGATAGGATTCAAA+GGG | - | chr8.3:26922969-26922988 | None:intergenic | 40.0% | |
| TCCCTTTGAATCCTATCACA+GGG | + | chr8.3:26922965-26922984 | MS.gene87467:intron | 40.0% | |
| TGAAATTGGCAAAGGAAGCA+AGG | + | chr8.3:26921364-26921383 | MS.gene87467:CDS | 40.0% | |
| TGTGCACAAATACGCATGTA+TGG | + | chr8.3:26922333-26922352 | MS.gene87467:intron | 40.0% | |
| TTGTGAAGATGAAGATCCCT+TGG | + | chr8.3:26922094-26922113 | MS.gene87467:CDS | 40.0% | |
| ! | AGTGGGAAACAACTTTTACC+TGG | - | chr8.3:26922304-26922323 | None:intergenic | 40.0% |
| !! | ACAAATGGGCTGAATAACGT+AGG | + | chr8.3:26922007-26922026 | MS.gene87467:intron | 40.0% |
| !! | GCTGAATAACGTAGGTTGAT+CGG | + | chr8.3:26922015-26922034 | MS.gene87467:intron | 40.0% |
| !!! | TCTCTTTCCCCTTTTTTGCA+GGG | + | chr8.3:26923422-26923441 | MS.gene87467:intron | 40.0% |
| !!! | TTCTCTTTCCCCTTTTTTGC+AGG | + | chr8.3:26923421-26923440 | MS.gene87467:intron | 40.0% |
| AATCCTATCACAGGGAGAGA+AGG | + | chr8.3:26922973-26922992 | MS.gene87467:intron | 45.0% | |
| AGGAAACAACCAGGTATCAC+AGG | - | chr8.3:26922245-26922264 | None:intergenic | 45.0% | |
| AGGCATCAATCCAATAGCAC+GGG | - | chr8.3:26922273-26922292 | None:intergenic | 45.0% | |
| CATCAGAACTAGGACATCCA+AGG | - | chr8.3:26922114-26922133 | None:intergenic | 45.0% | |
| CCAATCTCTAAGTCATGCCA+TGG | - | chr8.3:26921057-26921076 | None:intergenic | 45.0% | |
| CCATGGCATGACTTAGAGAT+TGG | + | chr8.3:26921054-26921073 | MS.gene87467:CDS | 45.0% | |
| CCTTGATGTCCTTGTAATGG+CGG | - | chr8.3:26923039-26923058 | None:intergenic | 45.0% | |
| CTAATTTCAGCAAGCCTGTG+TGG | - | chr8.3:26923070-26923089 | None:intergenic | 45.0% | |
| CTCCCTGTGATAGGATTCAA+AGG | - | chr8.3:26922970-26922989 | None:intergenic | 45.0% | |
| CTCCCTTTGAATCCTATCAC+AGG | + | chr8.3:26922964-26922983 | MS.gene87467:intron | 45.0% | |
| CTGTGATAGGATTCAAAGGG+AGG | - | chr8.3:26922966-26922985 | None:intergenic | 45.0% | |
| GCTCCTTGATGTCCTTGTAA+TGG | - | chr8.3:26923042-26923061 | None:intergenic | 45.0% | |
| TCATTCAACGCAACAACTGG+AGG | - | chr8.3:26920988-26921007 | None:intergenic | 45.0% | |
| TTGAAAACAGATGGAGCTCC+TGG | - | chr8.3:26921173-26921192 | None:intergenic | 45.0% | |
| TTTCCCGTTGATCCCTCTAA+TGG | - | chr8.3:26922609-26922628 | None:intergenic | 45.0% | |
| AAGATGCTGCTGCTCATCCA+TGG | + | chr8.3:26921037-26921056 | MS.gene87467:CDS | 50.0% | |
| ACCAGCTGAAGCTGCTGTTA+AGG | + | chr8.3:26923299-26923318 | MS.gene87467:CDS | 50.0% | |
| ATTTCAGCAAGCCTGTGTGG+AGG | - | chr8.3:26923067-26923086 | None:intergenic | 50.0% | |
| CATCCTTCTCTCCCTGTGAT+AGG | - | chr8.3:26922979-26922998 | None:intergenic | 50.0% | |
| CCGCCATTACAAGGACATCA+AGG | + | chr8.3:26923036-26923055 | MS.gene87467:CDS | 50.0% | |
| CCTTGTAATGGCGGTACTCA+GGG | - | chr8.3:26923030-26923049 | None:intergenic | 50.0% | |
| GAATAGGAGCCTGTGATACC+TGG | + | chr8.3:26922233-26922252 | MS.gene87467:intron | 50.0% | |
| TCCTTGTAATGGCGGTACTC+AGG | - | chr8.3:26923031-26923050 | None:intergenic | 50.0% | |
| TTTCAGCAAGCCTGTGTGGA+GGG | - | chr8.3:26923066-26923085 | None:intergenic | 50.0% | |
| !! | GGATGTCCTAGTTCTGATGC+AGG | + | chr8.3:26922115-26922134 | MS.gene87467:CDS | 50.0% |
| ATCCAATAGCACGGGCACGA+AGG | - | chr8.3:26922265-26922284 | None:intergenic | 55.0% | |
| CGTATTTGTGCACAAGCGCG+TGG | - | chr8.3:26922327-26922346 | None:intergenic | 55.0% | |
| GCCTTAACAGCAGCTTCAGC+TGG | - | chr8.3:26923303-26923322 | None:intergenic | 55.0% | |
| TTCCTTCGTGCCCGTGCTAT+TGG | + | chr8.3:26922260-26922279 | MS.gene87467:CDS | 55.0% | |
| ! | CCCTGAGTACCGCCATTACA+AGG | + | chr8.3:26923027-26923046 | MS.gene87467:CDS | 55.0% |
| CGGGCACGAAGGAAACAACC+AGG | - | chr8.3:26922254-26922273 | None:intergenic | 60.0% | |
| TCAAGGAGCTCCCTCCACAC+AGG | + | chr8.3:26923053-26923072 | MS.gene87467:CDS | 60.0% | |
| TGTGCACAAGCGCGTGGAGT+GGG | - | chr8.3:26922321-26922340 | None:intergenic | 60.0% | |
| TTGTGCACAAGCGCGTGGAG+TGG | - | chr8.3:26922322-26922341 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26920901 | 26923485 | 26920901 | ID=MS.gene87467 |
| chr8.3 | mRNA | 26920901 | 26923485 | 26920901 | ID=MS.gene87467.t1;Parent=MS.gene87467 |
| chr8.3 | exon | 26920901 | 26921075 | 26920901 | ID=MS.gene87467.t1.exon1;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26920901 | 26921075 | 26920901 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26921168 | 26921196 | 26921168 | ID=MS.gene87467.t1.exon2;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26921168 | 26921196 | 26921168 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26921359 | 26921424 | 26921359 | ID=MS.gene87467.t1.exon3;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26921359 | 26921424 | 26921359 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26922029 | 26922136 | 26922029 | ID=MS.gene87467.t1.exon4;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26922029 | 26922136 | 26922029 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26922239 | 26922304 | 26922239 | ID=MS.gene87467.t1.exon5;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26922239 | 26922304 | 26922239 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26922986 | 26923106 | 26922986 | ID=MS.gene87467.t1.exon6;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26922986 | 26923106 | 26922986 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26923256 | 26923337 | 26923256 | ID=MS.gene87467.t1.exon7;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26923256 | 26923337 | 26923256 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| chr8.3 | exon | 26923443 | 26923485 | 26923443 | ID=MS.gene87467.t1.exon8;Parent=MS.gene87467.t1 |
| chr8.3 | CDS | 26923443 | 26923485 | 26923443 | ID=cds.MS.gene87467.t1;Parent=MS.gene87467.t1 |
| Gene Sequence |
| Protein sequence |
