AlfalfaGEDB | MS.gene26659

M. sativa cultivar XinJiangDaYe / MS.gene26659

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26659.t1	XP_013456959.1	100	84	0	0	69	152	275	358	4.80E-27	131

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26659.t1	I3T3J6	100.0	84	0	0	69	152	275	358	3.5e-27	131.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene26659	0.854613	1.10E-61	-1.69E-46
MS.gene049190	MS.gene26659	0.833858	4.19E-56	-1.69E-46
MS.gene049227	MS.gene26659	0.835857	1.31E-56	-1.69E-46
MS.gene049254	MS.gene26659	0.818327	2.08E-52	-1.69E-46
MS.gene049350	MS.gene26659	0.829028	6.47E-55	-1.69E-46
MS.gene049404	MS.gene26659	0.810438	1.15E-50	-1.69E-46
MS.gene049418	MS.gene26659	0.84481	6.00E-59	-1.69E-46
MS.gene049501	MS.gene26659	0.80989	1.51E-50	-1.69E-46
MS.gene049672	MS.gene26659	0.807197	5.69E-50	-1.69E-46
MS.gene049711	MS.gene26659	0.891323	4.41E-74	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26659.t1	MTR_4g088385	96.104	154	2	3	1	152	207	358	5.53e-91	268
MS.gene26659.t1	MTR_2g014400	52.381	147	56	5	13	151	120	260	1.76e-18	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACAATCCAACATTCAA+TGG	0.477159	4.1:+21861865	MS.gene26659:CDS
AACACAAAGTTCCCAGAAGA+AGG	0.504928	4.1:+21861652	MS.gene26659:CDS
AATAACAAGAACTCTATGAA+TGG	0.533344	4.1:+21861973	MS.gene26659:CDS
AATGAGTGACACAAGAGTTA+TGG	0.465302	4.1:+21861804	MS.gene26659:CDS
ACAATTACAACAATGGTGAG+AGG	0.652438	4.1:+21861776	MS.gene26659:CDS
AGTAACAACAATTACAACAA+TGG	0.621284	4.1:+21861769	MS.gene26659:CDS
AGTGACACAAGAGTTATGGA+AGG	0.692016	4.1:+21861808	MS.gene26659:CDS
ATTGAGTTGTAACCTTCTTC+TGG	0.340437	4.1:-21861664	None:intergenic
CTTCAAACTGCTCTTGATTC+TGG	0.250818	4.1:-21861999	None:intergenic
GACACAAGAGTTATGGAAGG+TGG	0.628338	4.1:+21861811	MS.gene26659:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAATTGGTACAACAAAAA+AGG	+	chr4.1:21861916-21861935	MS.gene26659:CDS	30.0%
TTCAATGGAGATTCATCTAA+AGG	+	chr4.1:21861880-21861899	MS.gene26659:CDS	30.0%
AATGAGTGACACAAGAGTTA+TGG	+	chr4.1:21861804-21861823	MS.gene26659:CDS	35.0%
ACAATTACAACAATGGTGAG+AGG	+	chr4.1:21861776-21861795	MS.gene26659:CDS	35.0%
GATGAATCTCCATTGAATGT+TGG	-	chr4.1:21861877-21861896	None:intergenic	35.0%
AACACAAAGTTCCCAGAAGA+AGG	+	chr4.1:21861652-21861671	MS.gene26659:CDS	40.0%
AGTGACACAAGAGTTATGGA+AGG	+	chr4.1:21861808-21861827	MS.gene26659:CDS	40.0%
CTTCAAACTGCTCTTGATTC+TGG	-	chr4.1:21862002-21862021	None:intergenic	40.0%
GACACAAGAGTTATGGAAGG+TGG	+	chr4.1:21861811-21861830	MS.gene26659:CDS	45.0%
TACAACAATGGTGAGAGGCA+AGG	+	chr4.1:21861781-21861800	MS.gene26659:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	21861589	21862047	21861589	ID=MS.gene26659
chr4.1	mRNA	21861589	21862047	21861589	ID=MS.gene26659.t1;Parent=MS.gene26659
chr4.1	exon	21861589	21862047	21861589	ID=MS.gene26659.t1.exon1;Parent=MS.gene26659.t1
chr4.1	CDS	21861589	21862047	21861589	ID=cds.MS.gene26659.t1;Parent=MS.gene26659.t1

Gene Sequence

>MS.gene26659

ATGGAAAACCAGAACAATAACAACAACAACAAGTATTTCTACAACAACAAAGATGCTTCTAGCAACACAAAGTTCCCAGAAGAAGGTTACAACTCAATGCAAAACCAGAACAACAACAACAACTACGAGAAGTATAACTACAACAACAAAGTTGCTGTTAATGACAAATACAGCTTCAAAAGTAACAACAATTACAACAATGGTGAGAGGCAAGGAATGAGTGACACAAGAGTTATGGAAGGTGGAAAATATTTTTATGATGTTAACTCTGAGGAGAAATACAATCCAACATTCAATGGAGATTCATCTAAAGGAGTTGTGAACTCTGAGAATTGGTACAACAAAAAAGGTTACTTTGGTAACAACAATGTGAACAATTATGAGAATAACAAGAACTCTATGAATGGTTACCAGAATCAAGAGCAGTTTGAAGATGATCAAGAAGAATTTGAGCCTTGA

Protein sequence

>MS.gene26659.t1

MENQNNNNNNKYFYNNKDASSNTKFPEEGYNSMQNQNNNNNYEKYNYNNKVAVNDKYSFKSNNNYNNGERQGMSDTRVMEGGKYFYDVNSEEKYNPTFNGDSSKGVVNSENWYNKKGYFGNNNVNNYENNKNSMNGYQNQEQFEDDQEEFEP