Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09124.t1 | XP_013455924.1 | 98.2 | 649 | 12 | 0 | 71 | 719 | 112 | 760 | 0.00E+00 | 1261.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09124.t1 | Q42572 | 73.7 | 616 | 162 | 0 | 104 | 719 | 158 | 773 | 4.7e-270 | 931.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09124.t1 | A0A072UVT2 | 98.2 | 649 | 12 | 0 | 71 | 719 | 112 | 760 | 0.0e+00 | 1261.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052372 | MS.gene09124 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene09124 | 0.816601 | 5.08E-52 | -1.69E-46 |
| MS.gene054551 | MS.gene09124 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene054552 | MS.gene09124 | 0.830594 | 2.69E-55 | -1.69E-46 |
| MS.gene054593 | MS.gene09124 | 0.825839 | 3.77E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene09124 | 0.817252 | 3.63E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene09124 | 0.819857 | 9.32E-53 | -1.69E-46 |
| MS.gene056526 | MS.gene09124 | 0.839686 | 1.37E-57 | -1.69E-46 |
| MS.gene058827 | MS.gene09124 | 0.806237 | 9.07E-50 | -1.69E-46 |
| MS.gene060473 | MS.gene09124 | 0.817459 | 3.26E-52 | -1.69E-46 |
| MS.gene060565 | MS.gene09124 | 0.816748 | 4.71E-52 | -1.69E-46 |
| MS.gene06093 | MS.gene09124 | 0.805854 | 1.09E-49 | -1.69E-46 |
| MS.gene061260 | MS.gene09124 | 0.815413 | 9.36E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09124 | MS.gene071460 | PPI |
| MS.gene87898 | MS.gene09124 | PPI |
| MS.gene056051 | MS.gene09124 | PPI |
| MS.gene55626 | MS.gene09124 | PPI |
| MS.gene005383 | MS.gene09124 | PPI |
| MS.gene82109 | MS.gene09124 | PPI |
| MS.gene90358 | MS.gene09124 | PPI |
| MS.gene09124 | MS.gene071456 | PPI |
| MS.gene04418 | MS.gene09124 | PPI |
| MS.gene79799 | MS.gene09124 | PPI |
| MS.gene05640 | MS.gene09124 | PPI |
| MS.gene90359 | MS.gene09124 | PPI |
| MS.gene08109 | MS.gene09124 | PPI |
| MS.gene066960 | MS.gene09124 | PPI |
| MS.gene20956 | MS.gene09124 | PPI |
| MS.gene04079 | MS.gene09124 | PPI |
| MS.gene47284 | MS.gene09124 | PPI |
| MS.gene49838 | MS.gene09124 | PPI |
| MS.gene005245 | MS.gene09124 | PPI |
| MS.gene042871 | MS.gene09124 | PPI |
| MS.gene21089 | MS.gene09124 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09124.t1 | MTR_4g057345 | 98.192 | 719 | 12 | 1 | 1 | 719 | 43 | 760 | 0.0 | 1449 |
| MS.gene09124.t1 | MTR_4g057340 | 84.072 | 722 | 106 | 3 | 1 | 719 | 1 | 716 | 0.0 | 1231 |
| MS.gene09124.t1 | MTR_8g468400 | 67.227 | 714 | 210 | 6 | 14 | 719 | 1 | 698 | 0.0 | 956 |
| MS.gene09124.t1 | MTR_7g082860 | 38.941 | 642 | 362 | 10 | 107 | 723 | 765 | 1401 | 6.93e-157 | 491 |
| MS.gene09124.t1 | MTR_7g082860 | 37.500 | 648 | 350 | 12 | 107 | 723 | 765 | 1388 | 2.27e-142 | 452 |
| MS.gene09124.t1 | MTR_7g082860 | 39.372 | 541 | 302 | 7 | 107 | 624 | 765 | 1302 | 4.92e-131 | 421 |
| MS.gene09124.t1 | MTR_7g082860 | 39.258 | 512 | 285 | 7 | 107 | 595 | 765 | 1273 | 1.76e-119 | 388 |
| MS.gene09124.t1 | MTR_7g082860 | 37.121 | 396 | 234 | 4 | 107 | 490 | 765 | 1157 | 2.69e-83 | 287 |
| MS.gene09124.t1 | MTR_2g038030 | 26.210 | 496 | 286 | 17 | 244 | 704 | 132 | 582 | 2.99e-33 | 137 |
| MS.gene09124.t1 | MTR_2g038030 | 26.453 | 499 | 281 | 19 | 244 | 704 | 132 | 582 | 4.50e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09124.t1 | AT1G08130 | 67.715 | 731 | 208 | 5 | 7 | 719 | 53 | 773 | 0.0 | 1008 |
| MS.gene09124.t1 | AT1G49250 | 61.305 | 659 | 222 | 3 | 62 | 719 | 14 | 640 | 0.0 | 805 |
| MS.gene09124.t1 | AT1G66730 | 38.367 | 649 | 375 | 9 | 104 | 729 | 748 | 1394 | 1.64e-148 | 468 |
| MS.gene09124.t1 | AT5G57160 | 24.765 | 533 | 311 | 21 | 211 | 704 | 104 | 585 | 3.75e-24 | 109 |
| MS.gene09124.t1 | AT5G57160 | 28.244 | 262 | 145 | 10 | 475 | 704 | 1 | 251 | 2.51e-14 | 77.4 |
Find 157 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATTTGTTGTACCTTAA+TGG | 0.174924 | 4.1:-40858756 | MS.gene09124:CDS |
| TCAAAAGGAGACTGAATTTC+AGG | 0.197824 | 4.1:+40860799 | None:intergenic |
| TGAAATTCTAAATAAGTTTC+AGG | 0.202495 | 4.1:-40860417 | MS.gene09124:CDS |
| ACAGATTAAGATTCAGTATA+AGG | 0.259053 | 4.1:-40863822 | MS.gene09124:intron |
| ACAGAGAATCCTTCCTTTCC+AGG | 0.271926 | 4.1:-40859060 | MS.gene09124:intron |
| GGAGTAAAATCACACTTCTT+TGG | 0.283745 | 4.1:+40860488 | None:intergenic |
| CCCACTGCAGCTCGGTAAAC+AGG | 0.304641 | 4.1:+40856349 | None:intergenic |
| ACCTCTTTCGACGAAGAATC+TGG | 0.312752 | 4.1:-40858208 | MS.gene09124:CDS |
| AGCCTGATGCTTTGACTATT+AGG | 0.315018 | 4.1:-40862691 | MS.gene09124:CDS |
| TCCGAGTTCGGTTGTTTGTT+GGG | 0.323669 | 4.1:-40864101 | MS.gene09124:CDS |
| GGCGGCGGCGGCGCGTGCGC+CGG | 0.325535 | 4.1:+40864381 | None:intergenic |
| GGCGCATGAAGGGTTGGAAT+TGG | 0.333543 | 4.1:-40863903 | MS.gene09124:CDS |
| TCCGTTTCTGTTTCTCTGCT+TGG | 0.334006 | 4.1:-40864062 | MS.gene09124:CDS |
| GAAACTGAAGAAAGATTATA+TGG | 0.336761 | 4.1:-40857671 | MS.gene09124:CDS |
| TTTCAAAGCATTTGTAAGAT+AGG | 0.347737 | 4.1:-40857280 | MS.gene09124:intron |
| GAAGAAGTGCTTGGCCATTA+AGG | 0.354488 | 4.1:+40858742 | None:intergenic |
| TATAAATGTTCACAGGAATC+TGG | 0.355908 | 4.1:-40861081 | MS.gene09124:intron |
| ATCCGAGTTCGGTTGTTTGT+TGG | 0.357249 | 4.1:-40864102 | MS.gene09124:CDS |
| CACTCCTTACGTATGGTGTA+TGG | 0.357780 | 4.1:-40860517 | MS.gene09124:CDS |
| TTCTTCATGAACAGTTTCTT+CGG | 0.359805 | 4.1:+40864225 | None:intergenic |
| CGGTGATGCTTCGATCATTA+AGG | 0.367543 | 4.1:-40863876 | MS.gene09124:CDS |
| AGAGCCAGGGACCTTTGGTT+TGG | 0.369744 | 4.1:+40857061 | None:intergenic |
| TGTAGCTTTGAGTGACATAA+AGG | 0.375806 | 4.1:-40858799 | MS.gene09124:CDS |
| GAGCCAGGGACCTTTGGTTT+GGG | 0.389083 | 4.1:+40857062 | None:intergenic |
| TCACTAGATTTGGTACCTAT+TGG | 0.390041 | 4.1:-40857554 | MS.gene09124:CDS |
| TTCCAGACAAAATTGCGAAT+TGG | 0.396547 | 4.1:-40860895 | MS.gene09124:intron |
| TTACTCCTGGTGTTCCGGTT+GGG | 0.398083 | 4.1:-40860472 | MS.gene09124:CDS |
| GCCTGCTCAGGAGCTTTGTC+AGG | 0.402859 | 4.1:+40856138 | None:intergenic |
| TAATGGCCAAGCACTTCTTC+AGG | 0.406702 | 4.1:-40858739 | MS.gene09124:CDS |
| GGGCATAGTAGATTCTAATA+AGG | 0.411879 | 4.1:-40856329 | MS.gene09124:intron |
| ATATATAATCCGTTTGCTAC+AGG | 0.417845 | 4.1:-40860986 | MS.gene09124:intron |
| TATAGGGGACTCACTAGATT+TGG | 0.419918 | 4.1:-40857564 | MS.gene09124:CDS |
| CCTCCAAGCGGTCACTCAAC+TGG | 0.422032 | 4.1:-40857696 | MS.gene09124:CDS |
| TCAGACGAGGAGGCCTGCTC+AGG | 0.423980 | 4.1:+40856126 | None:intergenic |
| CAGATACATTTCTTAGAGAA+TGG | 0.426116 | 4.1:-40860264 | MS.gene09124:CDS |
| TTGAGTGGCGATGGAGGAGT+AGG | 0.431353 | 4.1:+40864310 | None:intergenic |
| TTGTCGAAGGCGGAGGGTGG+TGG | 0.431407 | 4.1:+40864412 | None:intergenic |
| TCTTCATGAACAGTTTCTTC+GGG | 0.434070 | 4.1:+40864226 | None:intergenic |
| TCGAAGATGATGATGTGTTT+CGG | 0.438288 | 4.1:+40864188 | None:intergenic |
| TTTACTCCTGGTGTTCCGGT+TGG | 0.439220 | 4.1:-40860473 | MS.gene09124:CDS |
| TACACCGGAGGATCTTGTTC+CGG | 0.442280 | 4.1:-40863957 | MS.gene09124:CDS |
| GGCGAGTTTCGATCCGAGTT+CGG | 0.444692 | 4.1:-40864113 | MS.gene09124:CDS |
| GCGCATGAAGGGTTGGAATT+GGG | 0.446162 | 4.1:-40863902 | MS.gene09124:CDS |
| GTACCTATTGGTGCTTTCCA+TGG | 0.447882 | 4.1:-40857542 | MS.gene09124:CDS |
| GCCTGACAAAGCTCCTGAGC+AGG | 0.451547 | 4.1:-40856139 | MS.gene09124:CDS |
| ATGTTGTTGCTGCAGTTTCA+AGG | 0.451764 | 4.1:-40860188 | MS.gene09124:intron |
| ATTGGTGCTTTCCATGGTCG+TGG | 0.454967 | 4.1:-40857536 | MS.gene09124:CDS |
| TTCCCCGTCTAGTTCGAGTT+CGG | 0.467023 | 4.1:-40856161 | MS.gene09124:CDS |
| AGCTCGGTAAACAGGGCTAA+TGG | 0.467833 | 4.1:+40856357 | None:intergenic |
| CGACCATGGAAAGCACCAAT+AGG | 0.468385 | 4.1:+40857539 | None:intergenic |
| TTCCTAATAGTCAAAGCATC+AGG | 0.474419 | 4.1:+40862689 | None:intergenic |
| TTCGACGACAAATAAACAAC+CGG | 0.475389 | 4.1:+40863938 | None:intergenic |
| CCAGTTGAGTGACCGCTTGG+AGG | 0.476893 | 4.1:+40857696 | None:intergenic |
| GAAACTGCAGCAACAACATC+AGG | 0.477339 | 4.1:+40860192 | None:intergenic |
| CCCTGTTTACCGAGCTGCAG+TGG | 0.477713 | 4.1:-40856350 | MS.gene09124:CDS |
| CAACAAGAAGCGACTTTATG+TGG | 0.481176 | 4.1:+40861031 | None:intergenic |
| AATCAATCAATCCTGATGTA+TGG | 0.482280 | 4.1:-40856942 | MS.gene09124:CDS |
| TGACAGGACAAAGGTGACTT+AGG | 0.483690 | 4.1:-40862758 | MS.gene09124:intron |
| TGATGTCTTGTAGGAGTGTA+TGG | 0.485043 | 4.1:-40857343 | MS.gene09124:intron |
| TTTGACAGCATAGGCCCAAC+CGG | 0.485180 | 4.1:+40860458 | None:intergenic |
| CAGCCAGTTGAGTGACCGCT+TGG | 0.486186 | 4.1:+40857693 | None:intergenic |
| TGTACTCTGACCTAGCTTGA+AGG | 0.486426 | 4.1:+40855816 | None:intergenic |
| GGTAAACAGGGCTAATGGTC+AGG | 0.487201 | 4.1:+40856362 | None:intergenic |
| GGGAATAGTCGCTGAATTGA+AGG | 0.489755 | 4.1:-40864164 | MS.gene09124:CDS |
| CATGGTCGTGGGAAACGTAC+AGG | 0.490701 | 4.1:-40857524 | MS.gene09124:intron |
| CATGAGTTTGTCGAAGGCGG+AGG | 0.491912 | 4.1:+40864405 | None:intergenic |
| TGAGTGGCGATGGAGGAGTA+GGG | 0.493124 | 4.1:+40864311 | None:intergenic |
| AACATTTCATCTTATTGCAA+AGG | 0.493161 | 4.1:-40862657 | MS.gene09124:intron |
| CTGACCTAGCTTGAAGGTAA+AGG | 0.493868 | 4.1:+40855822 | None:intergenic |
| TCCCAACAAACAACCGAACT+CGG | 0.494341 | 4.1:+40864100 | None:intergenic |
| AGGCCGAACTCGAACTAGAC+GGG | 0.497952 | 4.1:+40856158 | None:intergenic |
| AATTAACTTACCTCTTCAAA+AGG | 0.498329 | 4.1:+40860784 | None:intergenic |
| CAGAGAAACAGAAACGGAAC+AGG | 0.500284 | 4.1:+40864067 | None:intergenic |
| TCCAGATTCTTCGTCGAAAG+AGG | 0.501881 | 4.1:+40858207 | None:intergenic |
| GGAGATGATGAAGGTGGAGA+GGG | 0.501993 | 4.1:+40864349 | None:intergenic |
| CGCTTGCTGAGGCGTGTGGA+AGG | 0.510484 | 4.1:-40863853 | MS.gene09124:CDS |
| AGCAAACGGATTATATATAG+AGG | 0.513938 | 4.1:+40860991 | None:intergenic |
| AGTCGCTGAATTGAAGGAAA+AGG | 0.514554 | 4.1:-40864158 | MS.gene09124:CDS |
| CTCGCATCAAACCATACATC+AGG | 0.515232 | 4.1:+40856931 | None:intergenic |
| CAAACTCTCTTAGCTGCCTT+AGG | 0.516969 | 4.1:-40860862 | MS.gene09124:CDS |
| AGAATTGCGCCGGCGCATGA+AGG | 0.520567 | 4.1:-40863914 | MS.gene09124:CDS |
| CTTCAGTGTACACAGCAGCT+TGG | 0.521080 | 4.1:+40860839 | None:intergenic |
| TAGAATTTCAGATACACCCT+TGG | 0.523022 | 4.1:+40860430 | None:intergenic |
| GCAGGCCTCCTCGTCTGAGC+AGG | 0.524759 | 4.1:-40856121 | MS.gene09124:intron |
| GATGTGTTTCGGATCTTGCT+CGG | 0.526616 | 4.1:+40864199 | None:intergenic |
| AATTCCAACCCTTCATGCGC+CGG | 0.528853 | 4.1:+40863905 | None:intergenic |
| ATGCAACAAGTTCACAATCA+AGG | 0.533772 | 4.1:+40859096 | None:intergenic |
| CCGCTTGGAGGGTTCATATG+TGG | 0.534655 | 4.1:+40857708 | None:intergenic |
| TCCGCAGCTGAAGAAGAAAC+CGG | 0.534838 | 4.1:-40864134 | MS.gene09124:CDS |
| GGCAGCTAAGAGAGTTTGCT+CGG | 0.535405 | 4.1:+40860867 | None:intergenic |
| TTTCAGACATACTATAAATG+TGG | 0.536516 | 4.1:-40856967 | MS.gene09124:intron |
| ACTCCTTACGTATGGTGTAT+GGG | 0.537597 | 4.1:-40860516 | MS.gene09124:CDS |
| AGAAATGCTGAACGGAACAC+TGG | 0.537995 | 4.1:-40860222 | MS.gene09124:CDS |
| TGCGCCGGCGCATGAAGGGT+TGG | 0.538670 | 4.1:-40863909 | MS.gene09124:CDS |
| TTCTTTCGTTTAGGTGTGGG+AGG | 0.544797 | 4.1:-40856398 | MS.gene09124:intron |
| GAAGGGTTGGAATTGGGAAT+CGG | 0.545902 | 4.1:-40863896 | MS.gene09124:CDS |
| ATACGATGGAGAGCGTGCTC+AGG | 0.551459 | 4.1:-40860369 | MS.gene09124:intron |
| GCCAAGCAGAGAAACAGAAA+CGG | 0.551542 | 4.1:+40864061 | None:intergenic |
| AACAACATCAAATGATGTTG+AGG | 0.552524 | 4.1:-40858164 | MS.gene09124:CDS |
| CAGTTGAGTGACCGCTTGGA+GGG | 0.554490 | 4.1:+40857697 | None:intergenic |
| GAATTGCAACCTGTAGCAAA+CGG | 0.557122 | 4.1:+40860977 | None:intergenic |
| GGGAGATGATGAAGGTGGAG+AGG | 0.557440 | 4.1:+40864348 | None:intergenic |
| ATAGGCCCAACCGGAACACC+AGG | 0.558999 | 4.1:+40860467 | None:intergenic |
| GAGTGGCGATGGAGGAGTAG+GGG | 0.559751 | 4.1:+40864312 | None:intergenic |
| GTACACAGCAGCTTGGCCTA+AGG | 0.560199 | 4.1:+40860846 | None:intergenic |
| ATGAGATTACCTGGAAAGGA+AGG | 0.560383 | 4.1:+40859051 | None:intergenic |
| GCCGGTTTCTTCTTCAGCTG+CGG | 0.560705 | 4.1:+40864133 | None:intergenic |
| TAGAAGGTGTTACCTCTCTA+CGG | 0.561076 | 4.1:+40858703 | None:intergenic |
| GGAGACTGAATTTCAGGAGG+CGG | 0.562772 | 4.1:+40860805 | None:intergenic |
| AAATCCTTTACCTTCAAGCT+AGG | 0.563170 | 4.1:-40855826 | MS.gene09124:CDS |
| TGATGCTTTGACTATTAGGA+AGG | 0.564438 | 4.1:-40862687 | MS.gene09124:CDS |
| TTGGTGCTTTCCATGGTCGT+GGG | 0.568717 | 4.1:-40857535 | MS.gene09124:CDS |
| AAACACATCATCATCTTCGA+AGG | 0.569439 | 4.1:-40864185 | MS.gene09124:CDS |
| CCTGTTTACCGAGCTGCAGT+GGG | 0.571614 | 4.1:-40856349 | MS.gene09124:CDS |
| TGCCAAATACCTAATCATGT+TGG | 0.571918 | 4.1:+40855782 | None:intergenic |
| TTGACAAAGCCATTGATGCA+AGG | 0.578584 | 4.1:-40858126 | MS.gene09124:intron |
| GGCAATGAGATTACCTGGAA+AGG | 0.580861 | 4.1:+40859047 | None:intergenic |
| TGGGAATCACTTTAGAGCGA+AGG | 0.581370 | 4.1:+40857081 | None:intergenic |
| ACAACCGGAACAAGATCCTC+CGG | 0.582042 | 4.1:+40863953 | None:intergenic |
| GCCTTCGACAAACTCATGTC+CGG | 0.584797 | 4.1:-40864400 | MS.gene09124:CDS |
| GTCGTCGAATAGAATTGCGC+CGG | 0.586883 | 4.1:-40863924 | MS.gene09124:CDS |
| GGCTCTACTTTGCAGTATAG+GGG | 0.588353 | 4.1:-40857579 | MS.gene09124:intron |
| GTGTCTGCACTCCTTACGTA+TGG | 0.590991 | 4.1:-40860524 | MS.gene09124:CDS |
| GAAATGCTGAACGGAACACT+GGG | 0.591346 | 4.1:-40860221 | MS.gene09124:CDS |
| GAATTGCGCCGGCGCATGAA+GGG | 0.595193 | 4.1:-40863913 | MS.gene09124:CDS |
| GATCATTAAGGCGCTTGCTG+AGG | 0.595381 | 4.1:-40863864 | MS.gene09124:CDS |
| CAGGCCGAACTCGAACTAGA+CGG | 0.602214 | 4.1:+40856157 | None:intergenic |
| CCACTGCAGCTCGGTAAACA+GGG | 0.610534 | 4.1:+40856350 | None:intergenic |
| AACTGTGATACATGCTACAC+CGG | 0.611772 | 4.1:-40863972 | MS.gene09124:CDS |
| GCCGGACATGAGTTTGTCGA+AGG | 0.614625 | 4.1:+40864399 | None:intergenic |
| AAGGCGCTTGCTGAGGCGTG+TGG | 0.616663 | 4.1:-40863857 | MS.gene09124:CDS |
| GGACATGAGTTTGTCGAAGG+CGG | 0.617303 | 4.1:+40864402 | None:intergenic |
| AGTTTGTCGAAGGCGGAGGG+TGG | 0.619661 | 4.1:+40864409 | None:intergenic |
| TATGCTGTCAAAAGCAACCA+AGG | 0.619881 | 4.1:-40860447 | MS.gene09124:CDS |
| ATGAGTTTGTCGAAGGCGGA+GGG | 0.621134 | 4.1:+40864406 | None:intergenic |
| TATCGTTGTCATAGCACGCA+AGG | 0.623901 | 4.1:+40857311 | None:intergenic |
| GTTCCCATACACCATACGTA+AGG | 0.625733 | 4.1:+40860513 | None:intergenic |
| CTACTATGCCCACTGCAGCT+CGG | 0.628696 | 4.1:+40856341 | None:intergenic |
| AACACATCATCATCTTCGAA+GGG | 0.629193 | 4.1:-40864184 | MS.gene09124:CDS |
| GATATGATTAACGAAGAGAG+TGG | 0.632135 | 4.1:-40864034 | MS.gene09124:CDS |
| TAAAGTGATTCCCAAACCAA+AGG | 0.638299 | 4.1:-40857072 | MS.gene09124:intron |
| AAACTTGAAAATCCGTAGAG+AGG | 0.640219 | 4.1:-40858715 | MS.gene09124:intron |
| CTGTACGTTTCCCACGACCA+TGG | 0.650836 | 4.1:+40857525 | None:intergenic |
| AAAGGAGACTGAATTTCAGG+AGG | 0.653188 | 4.1:+40860802 | None:intergenic |
| GTACTTTACCTGCTCAGACG+AGG | 0.665242 | 4.1:+40856113 | None:intergenic |
| GCATCATAGACTGAGAAGAA+CGG | 0.671258 | 4.1:+40862717 | None:intergenic |
| ATGCTGTCAAAAGCAACCAA+GGG | 0.671976 | 4.1:-40860446 | MS.gene09124:CDS |
| GGCCGAACTCGAACTAGACG+GGG | 0.685841 | 4.1:+40856159 | None:intergenic |
| GAACTCGGATCGAAACTCGC+CGG | 0.689493 | 4.1:+40864115 | None:intergenic |
| GTGTTTCGGATCTTGCTCGG+TGG | 0.690872 | 4.1:+40864202 | None:intergenic |
| TGTGATACATGCTACACCGG+AGG | 0.695818 | 4.1:-40863969 | MS.gene09124:CDS |
| ACGTGTGAATACAAATACGA+TGG | 0.698464 | 4.1:-40860383 | MS.gene09124:CDS |
| GTTCTTCTCAGTCTATGATG+CGG | 0.698544 | 4.1:-40862715 | MS.gene09124:CDS |
| CCACATATGAACCCTCCAAG+CGG | 0.704525 | 4.1:-40857708 | MS.gene09124:CDS |
| CTTTACCTGCTCAGACGAGG+AGG | 0.708129 | 4.1:+40856116 | None:intergenic |
| TGTATGGTTTGATGCGAGTG+AGG | 0.711100 | 4.1:-40856926 | MS.gene09124:intron |
| TTTACAGTAGAAATGCTGAA+CGG | 0.714187 | 4.1:-40860230 | MS.gene09124:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 40855796 | 40864446 | 40855796 | ID=MS.gene09124 |
| chr4.1 | mRNA | 40855796 | 40864446 | 40855796 | ID=MS.gene09124.t1;Parent=MS.gene09124 |
| chr4.1 | exon | 40863823 | 40864446 | 40863823 | ID=MS.gene09124.t1.exon1;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40863823 | 40864446 | 40863823 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40862658 | 40862774 | 40862658 | ID=MS.gene09124.t1.exon2;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40862658 | 40862774 | 40862658 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40860987 | 40861088 | 40860987 | ID=MS.gene09124.t1.exon3;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40860987 | 40861088 | 40860987 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40860795 | 40860911 | 40860795 | ID=MS.gene09124.t1.exon4;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40860795 | 40860911 | 40860795 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40860370 | 40860600 | 40860370 | ID=MS.gene09124.t1.exon5;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40860370 | 40860600 | 40860370 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40860189 | 40860283 | 40860189 | ID=MS.gene09124.t1.exon6;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40860189 | 40860283 | 40860189 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40859061 | 40859148 | 40859061 | ID=MS.gene09124.t1.exon7;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40859061 | 40859148 | 40859061 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40858716 | 40858847 | 40858716 | ID=MS.gene09124.t1.exon8;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40858716 | 40858847 | 40858716 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40858127 | 40858239 | 40858127 | ID=MS.gene09124.t1.exon9;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40858127 | 40858239 | 40858127 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40857667 | 40857768 | 40857667 | ID=MS.gene09124.t1.exon10;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40857667 | 40857768 | 40857667 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40857525 | 40857586 | 40857525 | ID=MS.gene09124.t1.exon11;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40857525 | 40857586 | 40857525 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40857281 | 40857352 | 40857281 | ID=MS.gene09124.t1.exon12;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40857281 | 40857352 | 40857281 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40857073 | 40857146 | 40857073 | ID=MS.gene09124.t1.exon13;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40857073 | 40857146 | 40857073 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40856927 | 40856983 | 40856927 | ID=MS.gene09124.t1.exon14;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40856927 | 40856983 | 40856927 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40856330 | 40856407 | 40856330 | ID=MS.gene09124.t1.exon15;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40856330 | 40856407 | 40856330 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40856122 | 40856199 | 40856122 | ID=MS.gene09124.t1.exon16;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40856122 | 40856199 | 40856122 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| chr4.1 | exon | 40855796 | 40855852 | 40855796 | ID=MS.gene09124.t1.exon17;Parent=MS.gene09124.t1 |
| chr4.1 | CDS | 40855796 | 40855852 | 40855796 | ID=cds.MS.gene09124.t1;Parent=MS.gene09124.t1 |
| Gene Sequence |
| Protein sequence |
