AlfalfaGEDB | MS.gene052496

M. sativa cultivar XinJiangDaYe / MS.gene052496

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052496.t1	XP_024638507.1	58.2	273	36	3	1	197	76	346	1.40E-30	145.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052496.t1	G7ZZ81	58.2	273	36	3	1	197	75	345	1.0e-30	145.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052496	MS.gene052497	0.880247	6.43E-70	-1.69E-46
MS.gene052496	MS.gene057929	0.800349	1.50E-48	-1.69E-46
MS.gene052496	MS.gene059713	0.808087	3.68E-50	-1.69E-46
MS.gene052496	MS.gene062354	0.802992	4.31E-49	-1.69E-46
MS.gene052496	MS.gene066896	0.800234	1.59E-48	-1.69E-46
MS.gene052496	MS.gene067450	0.824996	5.96E-54	-1.69E-46
MS.gene052496	MS.gene26306	0.808034	3.78E-50	-1.69E-46
MS.gene052496	MS.gene27302	0.807084	6.01E-50	-1.69E-46
MS.gene052496	MS.gene27571	0.800468	1.42E-48	-1.69E-46
MS.gene052496	MS.gene27919	0.806346	8.60E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 185 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGTCCTTGATCAAA+TGG	0.461446	4.3:+23948304	MS.gene052496:CDS
AAATGCCCCGAACAACCATT+TGG	0.436570	4.3:-23947167	None:intergenic
AAATGCTGGTTTGATGGAAG+AGG	0.532923	4.3:+23948490	MS.gene052496:CDS
AACCAATATGTCATAAGTAG+CGG	0.633569	4.3:-23948561	None:intergenic
AACTTGTGAGTAATTGGGGT+TGG	0.551261	4.3:-23948134	None:intergenic
AAGAATGATAGAATTGGGTT+TGG	0.408383	4.3:+23947899	MS.gene052496:CDS
AATGGAATCGCGTAGATTGG+AGG	0.568740	4.3:+23947590	MS.gene052496:CDS
AATTAAAGATATGCACTCCA+AGG	0.568614	4.3:+23947686	MS.gene052496:CDS
AATTACGCTTCTCTAATAGA+TGG	0.384244	4.3:+23947729	MS.gene052496:CDS
ACAACTTGAAAAGAGTTGGG+AGG	0.654594	4.3:+23947643	MS.gene052496:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAATATGTCATAAGTAG+CGG	-	chr4.3:23948564-23948583	None:intergenic	30.0%
AAGAATGATAGAATTGGGTT+TGG	+	chr4.3:23947899-23947918	MS.gene052496:CDS	30.0%
AAGACAACGCATATAAGATA+CGG	-	chr4.3:23949896-23949915	None:intergenic	30.0%
AATTAAAGATATGCACTCCA+AGG	+	chr4.3:23947686-23947705	MS.gene052496:CDS	30.0%
AATTACGCTTCTCTAATAGA+TGG	+	chr4.3:23947729-23947748	MS.gene052496:CDS	30.0%
ACATTAACACTGAAAACATC+AGG	-	chr4.3:23946304-23946323	None:intergenic	30.0%
AGTGTTACAAAAAATGGAGA+AGG	+	chr4.3:23947368-23947387	MS.gene052496:CDS	30.0%
ATAATGGTAACAAAAAGCTC+TGG	+	chr4.3:23950697-23950716	MS.gene052496:intron	30.0%
ATCATACTGAAAAGATGGAT+TGG	+	chr4.3:23949792-23949811	MS.gene052496:intron	30.0%
ATGTCGTATGTCAAAGAATT+AGG	-	chr4.3:23948767-23948786	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	23946144	23950830	23946144	ID=MS.gene052496
chr4.3	mRNA	23946144	23950830	23946144	ID=MS.gene052496.t1;Parent=MS.gene052496
chr4.3	exon	23946144	23946258	23946144	ID=MS.gene052496.t1.exon1;Parent=MS.gene052496.t1
chr4.3	CDS	23946144	23946258	23946144	ID=cds.MS.gene052496.t1;Parent=MS.gene052496.t1
chr4.3	exon	23946445	23946496	23946445	ID=MS.gene052496.t1.exon2;Parent=MS.gene052496.t1
chr4.3	CDS	23946445	23946496	23946445	ID=cds.MS.gene052496.t1;Parent=MS.gene052496.t1
chr4.3	exon	23946533	23948862	23946533	ID=MS.gene052496.t1.exon3;Parent=MS.gene052496.t1
chr4.3	CDS	23946533	23948862	23946533	ID=cds.MS.gene052496.t1;Parent=MS.gene052496.t1
chr4.3	exon	23949624	23949683	23949624	ID=MS.gene052496.t1.exon4;Parent=MS.gene052496.t1
chr4.3	CDS	23949624	23949683	23949624	ID=cds.MS.gene052496.t1;Parent=MS.gene052496.t1
chr4.3	exon	23950747	23950830	23950747	ID=MS.gene052496.t1.exon5;Parent=MS.gene052496.t1
chr4.3	CDS	23950747	23950830	23950747	ID=cds.MS.gene052496.t1;Parent=MS.gene052496.t1

Gene Sequence

>MS.gene052496

ATTCTCCACCGCCTCTCATACTTTCTCTCACATGCGTGCTCTTGCTCTTGTTCCCACTTTACCTTTCTGGAATACCCTTTTGTATCAATTCAATGCCTCTGGTTTAGTTTCTCAGGTAAAACTTATGTATTCTGATATGCTGTTTTCTGGAGTTGTACCTGATGTTTTCAGTGTTAATGTTTTGGTTCATTCCTTGTGTAAAGTTGGTGATTTGGATTTGGCTTTAGGATATCTTAGGAACAATCATGTTGTTGATATTGATAATGTTACATATAATACTGTTATTTGGGGATTCTGTCAGAAAGGGTTGGTTGATCAGGGTTTTAGTCTGTTGTCTGAAATGGTTAAAAGAGGTTTATGTTTTGATTCAATCACTTGTAATATACTAGTTAAGGGTTATTGCAGAATTGGATTGGTTCAATATGCTGAGTGGGTTATGTACAACTTGGTTGATGGTGGGGTTACAAAAGATGTTATTGGTTTGAATACCTTGATTGATGGGTATTGTGAAGCTGGGTTGATGAGTCAAGCAACGGAGTTGATTGAGAATAGCTGGAGGAGTGATGTCAAGATTGATATTGTCACTTATAATACTTTGCTTAAAGCTTTTTGTAAAACGGGTGATCTTACGAGGGCTGAATCTCTTTTCAATGAGATTTTGGGATTTTGGAAAGACGAAGATCGGTTGAAAAATGATGATGTTGTAACTCAAAACGAGATAAGAAATTTGCAGCCTACGCTTGTCACATACACAACATTAATCGCTGCGTACTGTAAATTTGTTGGAGTTGAAGAATCACATTCTCTGTATAAGCAGATGATTATGAATGGAATCATGCCGGATGTGGTTACTTGTAGTTCTATTCTTTATGGATTCTGCAGGCATGGTAAACTAACCGAGGCAGCAGTTTTGTTTAGAGAGATGTATGAAATGGGTTTAGATCCTAATCATGTCTCGTATGCTACAATTATTAACTCACTGTTCAAATCAGGGAGGGTTATGGAAGCTTTTAATCTTCAAAGCCAAATGGTTGTTCGGGGCATTTCTTTTGATATAGTTACATGCACAGCTGTAATGGATGGACTTTTCAAAGTTGGGAAAACTAAAGAGGCTGAGGAAGTGTTCGAAACTATTCTAAAGCTCAATCTTGCCCCAAACTGTGTCACGTATTCGGCATTGCTTGATGGGTATTGCAAGTTAGGAAAAATGGAACTTGCAGAGTTAGTGTTACAAAAAATGGAGAAGGAACATGTTCCTCCAAATGTTATTACCTTTTCTTCCATTATAAATGGATATGCTAAAAAAGGAATGCTTAGTAAAGCAGTTGATGTGTTTAGGGAGATGGTCCAAAGGAATGTTAAGCCAAATACTATTGTTTATGCAATTTTAATTGATGCCTATTTTAGGGCAGGTGAACAAGATGTTGCTGATGGTTTCATTAAGGAAATGGAATCGCGTAGATTGGAGGAAAGCAATGTCATATTTGATATCTTATTGAACAACTTGAAAAGAGTTGGGAGGATGGATGAAGCTCGGTCGTTAATTAAAGATATGCACTCCAAGGGTATAGAGCCGGATATCGTTAATTACGCTTCTCTAATAGATGGCTACTTTAAAGAAGGAAACCAGTTAGCCGCTCTTTCCATTGTCCAGGAAATGAAAGAGAAAAACATCCGGTTTGATGTTGTTGCTTACAATGCTTTGATTAAGGGGCTCTTGAGGCTGGGGAAATATGACCCGCAATATGTATGTTCAAGAATGATAGAATTGGGTTTGGCTCCAGATTGTATTACATATAACACTGTAATTAACACATACTGCATAAAAGGTAAGACAGAAGATGCTTTGGATATTTTGAATGAGATGAAGAGCTACGGGATAATGCCAAATGCAGTCACTTACAACATTTTGATTGGCGGGCTTTGTAAAACTGGTGCAGTTGAAAAAGCAGAAAGAGTTTTAGATGAAATGTTAGTTATGGAGTTTGTGCCAACCCCAATTACTCACAAGTTTCTCGTTAAAGCATATTCAAGGAGTAAAAAAGCAGACAAAATTTTGCAAATTCACGAGAAACTTGTCGCCTCGGGCCTCGAACTCAGCCTGACTGTGTATAACACACTAATCACTGTGTTTTGCAGGTTAGGGATGACTAGAAAGGCAAAAGTGGTCCTTGATCAAATGGTAAAACGTGGAATTTCAGCTGATTATGTTACTTACAATGCCCTTATTCGCGGTTACTGTACAGGAAGTCACGTGGAGAAGGCATTGAAGACTTATTCACAGATGTTTGTTGATGGAATCGCTCCAAATATTGATACTTACAATACCCTTTTAGGAGGTCTTTCAAATGCTGGTTTGATGGAAGAGGCAGAGAAATTAGTTAGTGAGATGAAGGAAAGAGGACTTGTCCCAAATGCCGCTACTTATGACATATTGGTTTCTGGCTATGGTAGAGATGAAAACAAAAAAAAATCTATAATACTTTACATTGAAATGATAACCAAAGGTTTTGTTCCCACTTCAAAAACCTATAATGTGCTTATTAGTGATTATGCAAAAGCTGGAATGATGCGTGAAGCTAGAGAACTTTTGAATGACTTGCTGACAAAAGGAAGAATTCCTAATTCTTTGACATACGACATTCTAACCTGTGGATGGCTCAAATTATCATCTGAACCAGAGATAAACCGCTCACTTAAACGGTCGTACGAAATTGAGGTGAAAAAATTGCTGATAGAAATGGGGAGAAAAGGACTTAAATTTAGCAAAAAAGCTGAGGTTAGAAGGTTGAAGGTTGTCCCACATTGGATGGTAGATGCCCTGAACAAGTGTTTATAAGTGAGGGCAATCCTCACCTCACAAGCCAGTCTTGTGGGGTTGTGTAAGACCCGACCACGATTTCTAAGATGGTATCAGAGCCTCCTCCAAGATAAGTTGGGCCATCTGTTATCAGGTTTCCACTATCAGGTCACCCACCTCTTATATCCACGCTCCAAATGTCCAGTCCTGAGCGTGAGGGGGTGTGTTAAGAATCCCACATTGGATGGGAGATGGCCTGAACAAGTTTTTATAAGTGGGGGCAATCCTCACCTCACAAGTCGGTTTTGTGGGGTTGTGTAACACCCAACCACAATTTCTAAAAAAGCACGACAAGTGCTTTGATAGACACACCATTAGGGGTTATCAGGTTTCCACTATCGGGTCACCCACCTTTTATATCCACGCTCCAGATGTCCAGTCCTGAGCGTGAGGGGGTGTGTTAAGAGTCTCACATTGGATGGGAAATGGCCTGAACAAGTGTTTATAAGTGGGGGCAATCCTCACCTCACAAGTCGGTTTTTTGGGGTTGTGTAACACCCAACCACAATTTCTAAGAAAGCATGACAAGTGCTTTGATAGACACACCATTAGGGGTTATGAAACTGTAGTTAGAGCCAATCCTCAATAACTCAGTCTTAAACACTCATCAGGCTATATAGACCAAACTGCTGATGAGGTTTCAGAGAAAGAACACAATTCTGATATGCACCGATTTTCAGGTATATATATGATATGCATAAAACATTTCAGTTATAGTCTAAAGTGTAATAAAATGTTTATTTTTTTTCTTTCTGACTTGAACAGAACAGCAAATCTGTCCAATATGTATCATACTGAAAAGATGGATTGGGTTGTTTATGATGTCAAATTTTGTTTGGCACTGTATGCTTCTTTAGCATTTTCCCAACCTCCACTAGCTTACAATGCACCGTATCTTATATGCGTTGTCTTACTTAAATTTACGCGGTTATCCGTTACATTTATTTTCTTTCCATACTTAATTTTCTTGTTGGATATTAATAATTGTTAATACAATGTTGACCTCTACAGAATGCCACTGTTCGGGGAAGAATTACATCTGGTTGCAATACATTCGTGGAATGATGACAGACCATGTTTCTGGGGATTTATTGTTCCCATGGGACGTTATAATTCGTCCCTTGTGATGTTAAATCTCAAATGTTTGGGTTTGTAGCAAACACAATGCGCTCCTTCGAGGATAGAATTGATGCACTCCACAGGTTGGTAATCAAATGCTTCAGTGGTCTGAACTAATTTAAAAAGGACATTCTCATTGAATTGCAAAATCGCTATGCCTTCTTTCAAAACCTTTGTGTGTTTTAGTTCTTTACTCATTTGAGGGGCAGAAAAAAAGGATTAAGATAGACATTTTGTTTATGTTTGGATTTTCTTTGTATTTTTTGTCTGTTAGACGGTTTGGTGTCCAGGATAAAATATCTGAACTATTATTTTTTTCCCTTCTATTTATGTGGTTTACTATTCTTATTTTTGTACTGGGAAGTTGTAGGGTGAGCGCTGGATGGAAATTCTCATTTACTAAATGAAATCTGGGCTCAGGTATAGGGTAGTAGTCTTGTTAATGGCGTACTTGTGTCCAATGGGACTTATAATTTATAAAGGATGACCTGGAAGCCTTCTCTGCCTTAATTATGGTGTCTTGTTTAACCTGACACTTTGTTATTAGTTAGGGCATTTTTCTTGTCTTTTTTTAATAATGGTAACAAAAAGCTCTGGCAAGATTTAACATGTTTTCTCTTGCAGGTTGAGATAGATGGCCAGGTCTATGGTAAAGGGACTGGATTAACATGGGATGTGGCTAAAATGCAGGTATTATGTTTTCTTTAA

Protein sequence

>MS.gene052496.t1

ILHRLSYFLSHACSCSCSHFTFLEYPFVSIQCLWFSFSERVGUSGFUSVVUNGUKSUGLLQNWIGSICUVGYVQLGUWWGYKRCYWFEYLDUWVLUSWVDESSNGVDUEULEEUCQDUYCHLUYFAUSFLUNGUSYEGUISFQUDFGILERRRSVEKUUCCNSKRDKKFAAYACHIHNINRCVLUICWSURITFSVUADDYEWNHAGCGYLUFYSLWILQAWUTNRGSSFVURDVUNGFRSUSCLVCYNYULTVQIREGYGSFUSSKPNGCSGHFFUYSYMHSCNGWTFQSWENURGUGSVRNYSKAQSCPKLCHVFGIAUWVLQVRKNGTCRVSVTKNGEGTCSSKCYYLFFHYKWICUKRNAUUSSUCVUGDGPKECUAKYYCLCNFNUCLFUGRUTRCCUWFHUGNGIAUIGGKQCHIUYLIEQLEKSWEDGUSSVVNURYALQGYRAGYRULRFSNRWLLURRKPVSRSFHCPGNEREKHPVUCCCLQCFDUGALEAGEIUPAICMFKNDRIGFGSRLYYIUHCNUHILHKRUDRRCFGYFEUDEELRDNAKCSHLQHFDWRALUNWCSUKSRKSFRUNVSYGVCANPNYSQVSRUSIFKEUKSRQNFANSRETCRLGPRTQPDCVUHTNHCVLQVRDDUKGKSGPUSNGKTWNFSULCYLQCPYSRLLYRKSRGEGIEDLFTDVCUWNRSKYUYLQYPFRRSFKCWFDGRGREISUUDEGKRTCPKCRYLUHIGFWLWURUKQKKIYNTLHUNDNQRFCSHFKNLUCAYUULCKSWNDAUSURTFEULADKRKNSUFFDIRHSNLWMAQIIIUTRDKPLTUTVVRNUDQTADEVSEKEHNSDMHRFSGUDRWPGLWURDWINMGCGUNAGIMFSL