AlfalfaGEDB | MS.gene95255

M. sativa cultivar XinJiangDaYe / MS.gene95255

KEGG: K10875
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95255.t1	XP_024628422.1	98.4	875	12	1	11	883	19	893	0.00E+00	1615.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95255.t1	Q9SIW2	54.4	870	365	9	31	883	34	888	4.4e-262	905.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95255.t1	A0A396GNG9	98.4	875	12	1	11	883	19	893	0.0e+00	1615.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene95255.t1	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene95255	0.821547	3.81E-53	-1.69E-46
MS.gene049153	MS.gene95255	0.811066	8.43E-51	-1.69E-46
MS.gene049159	MS.gene95255	0.848798	4.87E-60	-1.69E-46
MS.gene049382	MS.gene95255	0.806091	9.74E-50	-1.69E-46
MS.gene049435	MS.gene95255	0.868216	7.70E-66	-1.69E-46
MS.gene049850	MS.gene95255	0.805604	1.23E-49	-1.69E-46
MS.gene050020	MS.gene95255	0.824766	6.76E-54	-1.69E-46
MS.gene050226	MS.gene95255	0.8202	7.78E-53	-1.69E-46
MS.gene050227	MS.gene95255	0.805019	1.63E-49	-1.69E-46
MS.gene050228	MS.gene95255	0.812029	5.21E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene037502	MS.gene95255	PPI
MS.gene057833	MS.gene95255	PPI
MS.gene057838	MS.gene95255	PPI
MS.gene057841	MS.gene95255	PPI
MS.gene49850	MS.gene95255	PPI
MS.gene70078	MS.gene95255	PPI
MS.gene95255	MS.gene70072	PPI
MS.gene95255	MS.gene70077	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95255.t1	MTR_8g037345	98.513	874	11	1	11	882	19	892	0.0	1773
MS.gene95255.t1	MTR_2g437480	82.058	797	126	8	102	883	248	1042	0.0	1326
MS.gene95255.t1	MTR_2g437480	55.705	149	52	3	10	147	12	157	1.89e-37	152
MS.gene95255.t1	MTR_1g081750	31.495	689	393	19	225	842	391	1071	4.69e-91	312
MS.gene95255.t1	MTR_7g026650	31.503	692	392	19	227	842	423	1108	6.68e-88	304
MS.gene95255.t1	MTR_3g071860	30.460	696	393	18	226	842	539	1222	6.86e-87	302
MS.gene95255.t1	MTR_7g450790	30.769	663	380	15	242	842	744	1389	2.27e-85	299
MS.gene95255.t1	MTR_7g029525	31.040	625	365	11	272	842	662	1274	4.26e-85	298
MS.gene95255.t1	MTR_5g083300	30.737	706	392	22	218	842	570	1259	5.16e-82	288
MS.gene95255.t1	MTR_5g083300	30.737	706	392	22	218	842	607	1296	5.89e-82	288

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95255.t1	AT2G16390	57.143	868	344	11	31	883	37	891	0.0	981
MS.gene95255.t1	AT2G16390	57.143	868	344	11	31	883	34	888	0.0	980
MS.gene95255.t1	AT2G21450	54.315	672	282	6	232	883	57	723	0.0	744
MS.gene95255.t1	AT2G21450	54.315	672	282	6	232	883	148	814	0.0	744
MS.gene95255.t1	AT2G21450	54.315	672	282	6	232	883	155	821	0.0	744
MS.gene95255.t1	AT1G05490	31.339	702	379	20	222	842	674	1353	1.00e-87	306
MS.gene95255.t1	AT3G24340	30.758	660	374	17	235	842	453	1081	6.45e-82	286
MS.gene95255.t1	AT3G42670	29.185	675	410	15	233	842	539	1210	2.48e-79	280
MS.gene95255.t1	AT3G42670	29.185	675	410	15	233	842	539	1210	2.48e-79	280
MS.gene95255.t1	AT3G42670	29.185	675	410	15	233	842	539	1210	2.48e-79	280

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Find 196 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCTGTGATTGCATA+CGG	0.482094	8.4:-60572654	None:intergenic
AAACACCTTTATCTTTCCTT+GGG	0.441563	8.4:-60574423	None:intergenic
AAACTTAAGTTATCAAGTGA+TGG	0.505358	8.4:+60572588	MS.gene95255:CDS
AAAGAAATCTTCGTGATTTC+CGG	0.176216	8.4:+60577345	MS.gene95255:CDS
AAAGATAAAGGTGTTTATCT+TGG	0.394549	8.4:+60574430	MS.gene95255:CDS
AAAGTTCTTCACTACTACAA+AGG	0.550973	8.4:+60576940	MS.gene95255:CDS
AAATGTCATAGATTTGGATG+AGG	0.611024	8.4:+60572845	MS.gene95255:CDS
AACAAATTCAAAGGGATGCT+AGG	0.499950	8.4:+60572868	MS.gene95255:CDS
AACATCCAAGATGATGACAC+GGG	0.663891	8.4:-60577487	None:intergenic
AACCTTTCCAAATATTTCAA+AGG	0.488803	8.4:-60577291	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTCTGTGATTGCATA+CGG	-	chr8.4:60572657-60572676	None:intergenic	30.0%
AAACACCTTTATCTTTCCTT+GGG	-	chr8.4:60574426-60574445	None:intergenic	30.0%
AAAGAAATCTTCGTGATTTC+CGG	+	chr8.4:60577345-60577364	MS.gene95255:CDS	30.0%
AAAGTTCTTCACTACTACAA+AGG	+	chr8.4:60576940-60576959	MS.gene95255:CDS	30.0%
AAAGTTGCTAAGAGTTGTTT+AGG	+	chr8.4:60573727-60573746	MS.gene95255:intron	30.0%
AAATGTCATAGATTTGGATG+AGG	+	chr8.4:60572845-60572864	MS.gene95255:CDS	30.0%
AAGAATTGTTGCAAGAGAAT+AGG	-	chr8.4:60574267-60574286	None:intergenic	30.0%
AATACCTGGAGAAAATGAAA+TGG	-	chr8.4:60572547-60572566	None:intergenic	30.0%
AATGCAAATTCACATATCTC+AGG	-	chr8.4:60575200-60575219	None:intergenic	30.0%
ACGTAAAAGCTCTGTATAAA+AGG	+	chr8.4:60577769-60577788	MS.gene95255:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	60572204	60577883	60572204	ID=MS.gene95255
chr8.4	mRNA	60572204	60577883	60572204	ID=MS.gene95255.t1;Parent=MS.gene95255
chr8.4	exon	60572204	60572231	60572204	ID=MS.gene95255.t1.exon1;Parent=MS.gene95255.t1
chr8.4	CDS	60572204	60572231	60572204	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1
chr8.4	exon	60572562	60573040	60572562	ID=MS.gene95255.t1.exon2;Parent=MS.gene95255.t1
chr8.4	CDS	60572562	60573040	60572562	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1
chr8.4	exon	60574292	60574546	60574292	ID=MS.gene95255.t1.exon3;Parent=MS.gene95255.t1
chr8.4	CDS	60574292	60574546	60574292	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1
chr8.4	exon	60575353	60575505	60575353	ID=MS.gene95255.t1.exon4;Parent=MS.gene95255.t1
chr8.4	CDS	60575353	60575505	60575353	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1
chr8.4	exon	60576058	60577790	60576058	ID=MS.gene95255.t1.exon5;Parent=MS.gene95255.t1
chr8.4	CDS	60576058	60577790	60576058	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1
chr8.4	exon	60577880	60577883	60577880	ID=MS.gene95255.t1.exon6;Parent=MS.gene95255.t1
chr8.4	CDS	60577880	60577883	60577880	ID=cds.MS.gene95255.t1;Parent=MS.gene95255.t1

Gene Sequence

>MS.gene95255

ATGGAGTTGAAAACCGGTGTTGTCCTTGGTAGCGTCATGTTTAAGTTTTAGTCCAATTGAATTATATAAGCGTTTAGAATATTTTCTCTTGTTTGTACTTGTAATTAGCTTCCTTAGGATGAATGCACAGATGCACATGTTGGAACATGTGGAGTTGCACAATATTCCCATTCAATATATAACACTTGAAAGAGATGCCTTTAGTTTATAAGTATCGTTTATGTCACCTATTCCATTAATAAATATATGTACTTATTAATGGATTTCTAATTGTTTAGTTTTTTAGTTTATCTGAAGCAAAATATGCCTTAATGGGCATTTGTATCATGTCAATTCTAATCCATTTCATTTTCTCCAGGTATTTCATCTGAGGAAGGATGCAAAAAACTTAAGTTATCAAGTGATGGTTTGCCATGTTCAGCACAAGCTAAGGTTGTTGATTACAGTAATCCGTATGCAATCACAGAAGTTTTAAACAGTTTAGAGGGTGGAGAATATGGTAGTGTGACAAAGGATATTGATGCCCTTATAACCCGAAAAATGCAAGTATTAGGCCCCTACTTTGCTAAATATCCTACCCTTATTGATCGATTCTTGAAAGTGGTGACAGATCAGGATGAAAAAAGTCACCACTCAGATCAAAATGTCATAGATTTGGATGAGGAACAAATTCAAAGGGATGCTAGGGCACCAAAAAGAGAAAAGGATGTTCCTGCGGCACCATGCCCTGTTGTTATAATTGATTCAGACGAGGAGGATGATAGGGATCAGAAGTCTTTTCATGCGTATCATGAAGTTGTTTTGCCAAAACGGCAGTCTCCTGCATTAAAAATGATTGTAAGCTTTGCCCTGCTTTTATTTTTGGAATATATAATTTTTTGGAATGTGCCTTGCCCTGCTTTTGTAATCCTTAAAAATATACCTTTATTTGGGTTGTATATCCCTTCTGGGGTCATTTGACTGAACTAATGTATTTCATTTTATCATTTGTGGCTCAAGAGTTTTTTAAATTCACAATTGACCCGTCTTGAATTTTTATCTTTTCTTGATTGTTTTTTTTTCTTAACCTAAATGTTGCACCTTTTGTCTCAAGTGTCCCAGTTCCAAAATCATTTACTGTTTTGCTAAACTTGAATCTTCCATTACAATATACAATTTCTGGTACCTTGTTGCTTTGTATTTATGTAAATTATAAAGTTGAAAATGAAAAATAAAATAATGTATGTTTGGATTTATATTTATTTAAATGCCATGTTATTTCCACCTTCCTTTTTTTTCTTTACTCCTATGATGCTGACAGAACCCTGAGTTCCTGTACATGTGTTGGCCCAATTGTTGGGCCCAATCCACACAAGCACAGCTTCTAGAAGCCAGTAGAAGCTGTGGGAATACAAACAGTCATAATAATTATTGGAATTTAGGCAGAAGTGCAGTTACTGAAGAGAAGGAAGCCTAGAGGGTTAGTCATTAAGAAGAGAATTTCAGTTATAAAAGAGGGGGGAGTCTAGAGGTAAGGCATTCAGAAAGTTGCTAAGAGTTGTTTAGGAGAGAAGTTCTCTCTGGTCTAGGAGCTTAGCTCTGGTAGGAGTTCTCTGAACTCTGGTTAATCCTTTCAATTTTCTGTTTTTCATCTTTTAAGAGCTTTGAGCTCACGTTAAATAAATACAGTGTTACTTTCAAATTTCGGGGTTCTATCAGATGCTATGGAACATGCCATAGTTGTTGAAAGACGAACAATATACAAGGTTTCCATTTAATTTTCAGAACATATTGATGAACTTTTTCCATAGGGATCGTTAGATGCTCATAAAAGTAAATTCCTTTGTAAGATTTTGTGTATTAGGATTAAAATTCATAGCTGCTTTTCTTGAGAAGATTCATGTCTTTCTTTTACAATGCAATTTGTTTCATTGACGCAGAGCATTAAGGTATTTTTTTTATTTTTCATTCTATCTAGCAGACCCCACGTAGTGGGAAAAGGCTTTGTTATTGTTCTTGTATCTAGCCGACCCCAAAATGGGAAAGGGAATATTATTATTGTTGTTTCACTAACATCCTTTCCTATTCTCTTGCAACAATTCTTTACAGGGATATCATCCTCCCAATGCTTACAATGGAGAAAGTTCAGATCTAAAATTTGAAACAAGTCTGCCTCCTAATGCATACTATGGAGAAAGCGCGGATAAAAAATTTGAAAAAAAACTGCCTCCTAAAGATAACCCAAGGAAAGATAAAGGTGTTTATCTTGGTGTACAAGAGGAAGAAGATAATGTGGTTGATGCTGAAGATGACGGGCTAGAGGATATTTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGTGCGGTTACATTTTTTTATTTGACTTTTCAATTATAACAACTATCTTTGTCAAGTAAATTTTTCCCCTACTCGTTTGGGTCATTGTTTCATAATATGTCCTCTGCAGTACTTCCTTAATAGTTATCTTTTAAGGATTCTGAGACAACTCATCTTCCTTGTTCAGATAAGGGGGAAATGGAAAAATGGGCTATTTTGTGGGGGTATGAATTGATATATAAAGAATTGTGACACCGATTCCTTCTTTCGATGGGGTTGTTACTAATTAACATGAATATCTTTTGATTTATAAAGCGGACTACTTAATTTTGTTAGTGTTCACTGAAAATGGTCTGTATTTCTATAAGCTTTATTAGTATAGGGTATATGTAGGTATATATGCTGGTGATCATACTGTAGTTAATATAATGCATATTGCATGTGATTTTATGTCTTGCAATCTTCTGAATTATGATGTTTGATTATTTTGCTCTTTCATTCAGCCTTTCTTTCTCTCTGTTATGCTTGTTATATGCATGTTAATCGTAAAGCTTCTGTCAAATTTTACATTGTTAGTAAGCTTTTGTTCTCTGCTCAAGAAAATAGCTTGTATACACATATCTTGGTAATTTAACTCTAAGAGCATTTGGAGTGTTGTTTCTATTACTAAAACCTGAGATATGTGAATTTGCATTTGCTGTTCTTTGCTTTTTTATCACTGTTCTCTATCTTATTGATCTTTTTTTTTTTTAAACTTTGAATTTTACTCATCATAGTATCTCTTAGAGTTCTTTTGGGATTAATTTATTTTAATTGCACTCCTACTAGGATGTTTCTGCAGATCCTCCGCCCGAAGAAGAAGAGGAAGAAGATGCTGACTGCGATCACTCTTTTGTTCTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGATAGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAGGCACTTGTCTATGCACGAATGCTTTTTTGGTCATAAATCTTCTAAGAACATCGCAAATGCATGCGTTGAGTTTTAAAGTATGTGTCTTAAAGTTAGATGCATAGTTTGCCTATGCATGAATGTTTTTTTGGTCATAAATCTTCTAAGAACATCGCAAATGCATGAGTTGAGTTTTAAAGTATGTGTCTTAAAATTAGATGCATAGGTTGAATATTTCAACAAGGCATAATAATATGAAGAGTGAAACAGTTCGAATTTAGATACTTGTTGTGTTAAATAATCTCCTCTGTTGTGGGAAAAGTGGTGGTTTTATCTGATTTGATTCAGTTTTGTAAAACATTCAGGAACCTCTTAGTCTTACCCAACCAAAATAATATAATAGCACATTAGGACATATTATGGCCTGGGTTAATTGCTTTGAAAAGCAGTTTCTTCATAATTCTCATTATATATGTTCTGGACTAATATTTGTGATACTTGTAGTTGGGGCTAGCAAATGTGTACAACTGATTTATTGTTATTTATTACCGTATCAATTTTGTTGAAGGTTAAAAGGAGCACCAGGACTTATATGTCCGATTCGTCGAAAGCCAAAGAAAAAGTGGATGCGTTTGGAGTGAAGATTGCTGAAGAAGATTTCTTGGTAACTGACATATCAGCCCATCCTCGGCATGCTAATCAAATGAAACCGCACCAAGTTGAAGGATTCAACTTTCTCGTCAGAAACTTGGTGGGAGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCGGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCCAATGCTCGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAGAAAGAGTTTCAAACGTGGCAAGTGGAAGATATACCGCTCTATGATCTATACACTGTGAAGGCTGACAGCAGATCTCAGCAACTGGAGGTGTTAAAACAATGGATGAATAACAAAAGTATCCTTTTCTTAGGATACAAACAGTTTTCTTCCATTGTGTGTGATAATAGTAATAACAATGCATCAATATCATGCCAAGAGATATTGCTTAAAGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACAGATATGGTACAGTCCCTTGCCAAAGTACAAACACCTAGGAAAGTTGTATTGTCTGGAACTCTTTATCAAAATCATGTTAGGGAGGTTTTCAATGTTCTCAATCTTGTGAGGCCGAAGTTTTTAAAGATGGAAACATCTAAGCCTATCGTCCGACGCATTCAGGCTAGGGTCCATATACCTAGCGTGAAACGCTTTGACGATTTGGTTGAGAATACATTACAGAAGGACCCAGATTTTAAAAGGAAAGTTGCTGTAATTCATGATTTGCGTGAGATGACCAGTAAAGTTCTTCACTACTACAAAGGCGATTTTCTTGACGAGCTTCCTGGCCTGGTAGATTTCACTGTGGTGCTCAAACTTACGCCCAGGCAGAAGATTGAAGTTGAGAAAGCAAAGAAGATGTATATTAGAAAGTTCAAATTTTCTTCTGTAGGCAGTGCAGTGTATCTGCACCCAAAGTTGAAGCCAATTGCAGAGAAATGTGATGAAAATTCCATATCTGATCATATCATGGATGATTTTATAGCAGACCTTGATATGAGAGATGGAGTCAAATCAAAGTTCTTTCGCAATATGCTGAACCTATGTGAATCAGCTGGGGAAAAACTTCTGGTGTTCAGTCAATATCTATTGCCTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTCGTGATTTCCGGAGAATCTTCCGCTGAACAAAGAGAGTTTTCAATGGAGAAATTTAACAATTCACCTGAGGCAAAAATATTTTTTGGCTCAATCAAAGCATGTGGTGAAGGGATTTCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGTCGTGCTTTTCGGCCAGGACAGAAAAAGAAAGTCTTTGTGTATCGTTTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACCATACTTGTTTCAAGAAGGAGTTAATCTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACCGCGCATTTGAAGTTGAAACACTTGATGTGAAAGAATGTGGTGATCTATTTCTCGAGAGCCCATTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTTAGACCACTTTTATTTACCTTTTTGCATATCATACGAAAATATGACATTTATATTTTCCTAATTCTTGTTTTATTTGTATTTGTCAGGTAA

Protein sequence

>MS.gene95255.t1

MELKTGVVLGISSEEGCKKLKLSSDGLPCSAQAKVVDYSNPYAITEVLNSLEGGEYGSVTKDIDALITRKMQVLGPYFAKYPTLIDRFLKVVTDQDEKSHHSDQNVIDLDEEQIQRDARAPKREKDVPAAPCPVVIIDSDEEDDRDQKSFHAYHEVVLPKRQSPALKMIGYHPPNAYNGESSDLKFETSLPPNAYYGESADKKFEKKLPPKDNPRKDKGVYLGVQEEEDNVVDAEDDGLEDIWREMSMAIETSKDVSADPPPEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSSKAKEKVDAFGVKIAEEDFLVTDISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMNNKSILFLGYKQFSSIVCDNSNNNASISCQEILLKVPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQARVHIPSVKRFDDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKIEVEKAKKMYIRKFKFSSVGSAVYLHPKLKPIAEKCDENSISDHIMDDFIADLDMRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHHTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR