Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52855.t1 | AES71222.2 | 95.1 | 447 | 20 | 2 | 1 | 447 | 1 | 445 | 4.40E-246 | 860.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52855.t1 | Q54ND5 | 25.1 | 439 | 261 | 9 | 58 | 447 | 102 | 521 | 1.9e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52855.t1 | A0A072UZE6 | 95.1 | 447 | 20 | 2 | 1 | 447 | 1 | 445 | 3.2e-246 | 860.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene52855 | 0.819303 | 1.25E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene52855 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene52855 | 0.825785 | 3.88E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene52855 | 0.809763 | 1.61E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene52855 | 0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene52855 | 0.839257 | 1.77E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene52855 | 0.8212 | 4.58E-53 | -1.69E-46 |
| MS.gene050438 | MS.gene52855 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene52855 | 0.839942 | 1.17E-57 | -1.69E-46 |
| MS.gene050719 | MS.gene52855 | 0.842456 | 2.56E-58 | -1.69E-46 |
| MS.gene050721 | MS.gene52855 | 0.838543 | 2.70E-57 | -1.69E-46 |
| MS.gene050724 | MS.gene52855 | 0.8363 | 1.01E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene52855 | 0.824452 | 8.01E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene52855 | 0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene52855 | 0.813351 | 2.67E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene52855 | 0.839748 | 1.32E-57 | -1.69E-46 |
| MS.gene052020 | MS.gene52855 | 0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene052496 | MS.gene52855 | 0.81086 | 9.34E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene52855 | 0.839252 | 1.77E-57 | -1.69E-46 |
| MS.gene053221 | MS.gene52855 | 0.814464 | 1.52E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene52855 | 0.806378 | 8.47E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene52855 | 0.824798 | 6.64E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene52855 | 0.829128 | 6.12E-55 | -1.69E-46 |
| MS.gene05468 | MS.gene52855 | 0.800913 | 1.15E-48 | -1.69E-46 |
| MS.gene055363 | MS.gene52855 | 0.80387 | 2.84E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene52855 | 0.814791 | 1.29E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene52855 | 0.821563 | 3.78E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene52855 | 0.806197 | 9.24E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene52855 | 0.81138 | 7.21E-51 | -1.69E-46 |
| MS.gene058168 | MS.gene52855 | 0.807179 | 5.74E-50 | -1.69E-46 |
| MS.gene058792 | MS.gene52855 | 0.954522 | 2.45E-112 | -1.69E-46 |
| MS.gene058793 | MS.gene52855 | 0.900184 | 9.44E-78 | -1.69E-46 |
| MS.gene059128 | MS.gene52855 | 0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene52855 | 0.807736 | 4.37E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene52855 | 0.801102 | 1.06E-48 | -1.69E-46 |
| MS.gene060572 | MS.gene52855 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene52855 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene060781 | MS.gene52855 | 0.817717 | 2.85E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene52855 | 0.801541 | 8.58E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52855.t1 | MTR_3g071580 | 95.078 | 447 | 20 | 2 | 1 | 447 | 1 | 445 | 0.0 | 843 |
| MS.gene52855.t1 | MTR_3g071580 | 95.078 | 447 | 20 | 2 | 1 | 447 | 1 | 445 | 0.0 | 842 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52855.t1 | AT1G09870 | 66.816 | 446 | 139 | 2 | 2 | 447 | 3 | 439 | 0.0 | 638 |
Find 104 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCCATTTGAAGTATTTA+AGG | 0.128114 | 3.3:-1495028 | None:intergenic |
| GCTCCAAAGGTTTCTCCTTC+TGG | 0.189619 | 3.3:+1495400 | None:intergenic |
| TCTGCATTAGTTGGGCGATA+TGG | 0.221007 | 3.3:-1497336 | MS.gene52855:CDS |
| CCTTGGCAAGGAAGGCTTAA+AGG | 0.244002 | 3.3:-1498600 | MS.gene52855:CDS |
| AGAGTTCCGTCTTGGTTAAA+TGG | 0.267555 | 3.3:-1498633 | MS.gene52855:CDS |
| ACCACAAGGTTTAAATGAAT+TGG | 0.278023 | 3.3:+1499455 | None:intergenic |
| CTCACCTGAGTTGCCTTTAT+AGG | 0.288772 | 3.3:+1498471 | None:intergenic |
| GGTTACGATAGTAGGATTTC+AGG | 0.291373 | 3.3:-1497416 | MS.gene52855:intron |
| ATCCATGGAGCAAGCTATTA+AGG | 0.308600 | 3.3:-1496591 | MS.gene52855:CDS |
| TCCTTAAGTCTATCAACTTC+GGG | 0.308723 | 3.3:+1497381 | None:intergenic |
| AAAAGAGCGGAAATTGTCTT+TGG | 0.330350 | 3.3:-1498658 | MS.gene52855:CDS |
| GGATAATTTGTCAGCTCAAC+TGG | 0.331316 | 3.3:-1498700 | MS.gene52855:CDS |
| TCAGCTAGTGCTGTGGCATT+TGG | 0.337150 | 3.3:-1498171 | MS.gene52855:CDS |
| TAGACTTAAGGAACCTATCT+TGG | 0.351543 | 3.3:-1497370 | MS.gene52855:CDS |
| GCGTTTATTCTAAAGGGTTA+TGG | 0.369605 | 3.3:-1496665 | MS.gene52855:CDS |
| CTGCATTAGTTGGGCGATAT+GGG | 0.371019 | 3.3:-1497335 | MS.gene52855:CDS |
| GGTTTATTTCTTGAAGAGTC+TGG | 0.374217 | 3.3:-1495539 | MS.gene52855:intron |
| AGCCTCCACAGAAAAGAAAA+TGG | 0.377131 | 3.3:-1495368 | MS.gene52855:CDS |
| GTGTATATAGATTACATTGC+TGG | 0.383792 | 3.3:-1496708 | MS.gene52855:intron |
| AATTATACGAACTTGGAATC+AGG | 0.387815 | 3.3:-1498548 | MS.gene52855:CDS |
| TTCAGTGGCAATGGAACTCT+TGG | 0.391689 | 3.3:-1498138 | MS.gene52855:CDS |
| TCCAGACATATATCCTATAA+AGG | 0.391852 | 3.3:-1498484 | MS.gene52855:CDS |
| GAGATTACATCTGCATTAGT+TGG | 0.394671 | 3.3:-1497345 | MS.gene52855:CDS |
| AAATCACTAAATTATAGAAT+GGG | 0.395225 | 3.3:-1496641 | MS.gene52855:CDS |
| GACACCTTAAATACTTCAAA+TGG | 0.399416 | 3.3:+1495024 | None:intergenic |
| GTCCCATTCTCATGTCTGCT+TGG | 0.401122 | 3.3:-1495560 | MS.gene52855:CDS |
| AAGCTTACAGGCATTGGAAT+GGG | 0.405845 | 3.3:+1495231 | None:intergenic |
| TTGGAGGCGTTTATTCTAAA+GGG | 0.408639 | 3.3:-1496671 | MS.gene52855:CDS |
| CTTGGAGGCGTTTATTCTAA+AGG | 0.419192 | 3.3:-1496672 | MS.gene52855:CDS |
| AACATCTCTCCACCGTCTCC+AGG | 0.430519 | 3.3:-1499611 | MS.gene52855:intron |
| TCTCTGGTTCTTATGTAAAC+AGG | 0.431034 | 3.3:-1497283 | MS.gene52855:intron |
| TTCCTTAAGTCTATCAACTT+CGG | 0.436190 | 3.3:+1497380 | None:intergenic |
| CTGTATAGTTGTCCTGCGTC+AGG | 0.438844 | 3.3:-1495300 | MS.gene52855:CDS |
| CTCAACTGGATGTTCTTGTA+AGG | 0.439096 | 3.3:-1498686 | MS.gene52855:CDS |
| GGCAATGGAACTCTTGGAAC+TGG | 0.447948 | 3.3:-1498132 | MS.gene52855:CDS |
| TAAATCACTAAATTATAGAA+TGG | 0.454360 | 3.3:-1496642 | MS.gene52855:CDS |
| CACAGCACTAGCTGATGCTC+GGG | 0.455439 | 3.3:+1498179 | None:intergenic |
| CTACAAAAGCTTACAGGCAT+TGG | 0.460567 | 3.3:+1495225 | None:intergenic |
| GGAAATCTCCTTGGCAAGGA+AGG | 0.464112 | 3.3:-1498608 | MS.gene52855:CDS |
| CTGACGCAGGACAACTATAC+AGG | 0.473699 | 3.3:+1495301 | None:intergenic |
| CTCCGACAAAGAAAAGGATA+AGG | 0.475675 | 3.3:-1498728 | MS.gene52855:CDS |
| AATCCAGAAGGAGAAACCTT+TGG | 0.476956 | 3.3:-1495403 | MS.gene52855:CDS |
| ACCCGAAGTTGATAGACTTA+AGG | 0.479122 | 3.3:-1497382 | MS.gene52855:CDS |
| TTCCGTCTTGGTTAAATGGA+TGG | 0.483104 | 3.3:-1498629 | MS.gene52855:CDS |
| ATAACAGGAAGCATCCTTGT+TGG | 0.485453 | 3.3:-1497116 | MS.gene52855:intron |
| TTGGAATCAGGATTAGAGAA+AGG | 0.488890 | 3.3:-1498536 | MS.gene52855:CDS |
| TAGTGCTGTGGCATTTGGAA+TGG | 0.489961 | 3.3:-1498166 | MS.gene52855:CDS |
| GGCTTTGGAGGTAGCTCCAA+AGG | 0.490471 | 3.3:+1495387 | None:intergenic |
| AGTGCTGTGGCATTTGGAAT+GGG | 0.491271 | 3.3:-1498165 | MS.gene52855:CDS |
| CTCGTTCTCCGACAAAGAAA+AGG | 0.491299 | 3.3:-1498734 | MS.gene52855:CDS |
| CTTTGGAGAGAGTTCCGTCT+TGG | 0.491832 | 3.3:-1498641 | MS.gene52855:CDS |
| AAAGAAAAGGATAAGGGAGT+TGG | 0.492650 | 3.3:-1498721 | MS.gene52855:CDS |
| TATTCACTGCAGGGTTGTCA+TGG | 0.494935 | 3.3:-1495060 | MS.gene52855:intron |
| AGATTACATCTGCATTAGTT+GGG | 0.499233 | 3.3:-1497344 | MS.gene52855:CDS |
| TCCACAGAAAAGAAAATGGC+GGG | 0.499586 | 3.3:-1495364 | MS.gene52855:CDS |
| TCCAATTCATTTAAACCTTG+TGG | 0.499872 | 3.3:-1499456 | MS.gene52855:intron |
| GCCTTTATAGGATATATGTC+TGG | 0.504217 | 3.3:+1498483 | None:intergenic |
| AACCAAGCAGACATGAGAAT+GGG | 0.505960 | 3.3:+1495558 | None:intergenic |
| CAGTTTCTGCATGAGCAAAC+CGG | 0.507648 | 3.3:+1495585 | None:intergenic |
| GGCATATTACATCATCTCTC+TGG | 0.508982 | 3.3:-1497299 | MS.gene52855:CDS |
| TGAAGATGTTGTTCAATCCA+TGG | 0.509427 | 3.3:-1496606 | MS.gene52855:CDS |
| AGCATGTTGTTACCAGCAAA+AGG | 0.511702 | 3.3:+1495327 | None:intergenic |
| GATGTAATCTCATCCAAGAT+AGG | 0.518769 | 3.3:+1497357 | None:intergenic |
| AAACCAAGCAGACATGAGAA+TGG | 0.520129 | 3.3:+1495557 | None:intergenic |
| CCACAGCACTAGCTGATGCT+CGG | 0.526889 | 3.3:+1498178 | None:intergenic |
| GAGGAAGAATTATACGAACT+TGG | 0.526932 | 3.3:-1498555 | MS.gene52855:CDS |
| CAAGCTATTAAGGCTGAAGA+AGG | 0.544813 | 3.3:-1496581 | MS.gene52855:intron |
| TTCCATCCATTTAACCAAGA+CGG | 0.547637 | 3.3:+1498627 | None:intergenic |
| CCTTTAAGCCTTCCTTGCCA+AGG | 0.550309 | 3.3:+1498600 | None:intergenic |
| TGAACAACATCTTCAAGTAA+TGG | 0.551000 | 3.3:+1496614 | None:intergenic |
| AAATCTCAGCAAGATGTCAC+TGG | 0.554670 | 3.3:+1498071 | None:intergenic |
| TAAATGGATGGAAATCTCCT+TGG | 0.554988 | 3.3:-1498617 | MS.gene52855:CDS |
| ACTACAAAAGTACCTCCAAT+GGG | 0.557015 | 3.3:+1497062 | None:intergenic |
| AAAGCTTACAGGCATTGGAA+TGG | 0.558496 | 3.3:+1495230 | None:intergenic |
| TCCGACAAAGAAAAGGATAA+GGG | 0.559478 | 3.3:-1498727 | MS.gene52855:CDS |
| AGCCTTAATAGCTTGCTCCA+TGG | 0.564475 | 3.3:+1496589 | None:intergenic |
| ATATCCTATAAAGGCAACTC+AGG | 0.566710 | 3.3:-1498475 | MS.gene52855:intron |
| TTGAGAAATGTAAAATCGAA+AGG | 0.568997 | 3.3:+1499667 | None:intergenic |
| GACTACAAAAGTACCTCCAA+TGG | 0.570542 | 3.3:+1497061 | None:intergenic |
| GTTCCTTCTAAAATTCCTCA+AGG | 0.574019 | 3.3:-1499485 | MS.gene52855:CDS |
| TTACATTCCCAGGCAAGGCA+TGG | 0.576004 | 3.3:-1498759 | MS.gene52855:intron |
| TATAGATTACATTGCTGGAG+TGG | 0.578859 | 3.3:-1496703 | MS.gene52855:intron |
| GCTGGAGTGGACAGATGACT+TGG | 0.580590 | 3.3:-1496690 | MS.gene52855:CDS |
| TTATAGGATATATGTCTGGA+TGG | 0.582429 | 3.3:+1498487 | None:intergenic |
| TGATTGTTGTCATAACTACA+AGG | 0.582799 | 3.3:-1498046 | MS.gene52855:intron |
| GGCGGTGAGCTAATTAAACT+AGG | 0.601575 | 3.3:-1498579 | MS.gene52855:CDS |
| TCAACTGGATGTTCTTGTAA+GGG | 0.604338 | 3.3:-1498685 | MS.gene52855:CDS |
| GGATGGAAATCTCCTTGGCA+AGG | 0.610408 | 3.3:-1498612 | MS.gene52855:CDS |
| AATCACTAAATTATAGAATG+GGG | 0.619098 | 3.3:-1496640 | MS.gene52855:CDS |
| GGAGTGGACAGATGACTTGG+AGG | 0.620597 | 3.3:-1496687 | MS.gene52855:CDS |
| AGCTTACAGGCATTGGAATG+GGG | 0.624158 | 3.3:+1495232 | None:intergenic |
| AGAGTTTGACAAAATCCAGA+AGG | 0.633058 | 3.3:-1495415 | MS.gene52855:CDS |
| CCGAGCATCAGCTAGTGCTG+TGG | 0.634420 | 3.3:-1498178 | MS.gene52855:CDS |
| TAATCCTCGTCAAACAAACT+CGG | 0.636648 | 3.3:+1498510 | None:intergenic |
| CTCCACAGAAAAGAAAATGG+CGG | 0.637496 | 3.3:-1495365 | MS.gene52855:CDS |
| TGAGCTAATTAAACTAGGAG+AGG | 0.639606 | 3.3:-1498574 | MS.gene52855:CDS |
| ACAGCACTAGCTGATGCTCG+GGG | 0.659608 | 3.3:+1498180 | None:intergenic |
| GTTTCCGAGTTTGTTTGACG+AGG | 0.659643 | 3.3:-1498514 | MS.gene52855:CDS |
| TGAATTGGAGTACATCCTTG+AGG | 0.660520 | 3.3:+1499470 | None:intergenic |
| CCACAGAAAAGAAAATGGCG+GGG | 0.671932 | 3.3:-1495363 | MS.gene52855:CDS |
| TTGTAAGGGATGTAAAAGAG+CGG | 0.687987 | 3.3:-1498671 | MS.gene52855:CDS |
| AAAATGGCGGGGTAGCAGTG+TGG | 0.701485 | 3.3:-1495352 | MS.gene52855:CDS |
| TTGATCAGTTATATCCAACA+AGG | 0.711218 | 3.3:+1497102 | None:intergenic |
| TGGCAAGGAAGGCTTAAAGG+CGG | 0.730530 | 3.3:-1498597 | MS.gene52855:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATATAACCATAAAAA+AGG | + | chr3.3:1497297-1497316 | None:intergenic | 10.0% |
| !! | AATAAAATTTAAAAAATGTC+AGG | - | chr3.3:1497752-1497771 | MS.gene52855:intron | 10.0% |
| !! | TAATTAATTATGAAATATGT+TGG | - | chr3.3:1495343-1495362 | MS.gene52855:CDS | 10.0% |
| !! | TATTTAAATAATATTTACAG+AGG | + | chr3.3:1497736-1497755 | None:intergenic | 10.0% |
| !! | AAAGAAACTAAATTAGTAAA+AGG | - | chr3.3:1497845-1497864 | MS.gene52855:intron | 15.0% |
| !! | AAAGAAGATTAAAATCAATA+TGG | + | chr3.3:1498697-1498716 | None:intergenic | 15.0% |
| !! | AAATCACTAAATTATAGAAT+GGG | - | chr3.3:1498096-1498115 | MS.gene52855:CDS | 15.0% |
| !! | AACATACATAAAATATAAGT+GGG | + | chr3.3:1495813-1495832 | None:intergenic | 15.0% |
| !! | AAGAAACTAAATTAGTAAAA+GGG | - | chr3.3:1497846-1497865 | MS.gene52855:intron | 15.0% |
| !! | GCAAATATGTATATAAATAT+AGG | + | chr3.3:1498224-1498243 | None:intergenic | 15.0% |
| !! | TAAATCACTAAATTATAGAA+TGG | - | chr3.3:1498095-1498114 | MS.gene52855:CDS | 15.0% |
| !! | TAATCTATATACACATAATT+TGG | + | chr3.3:1498023-1498042 | None:intergenic | 15.0% |
| !! | TTATGGTTATATAATTTCTT+TGG | - | chr3.3:1497300-1497319 | MS.gene52855:CDS | 15.0% |
| !!! | ATGTTGGTTATATATATAAT+AGG | - | chr3.3:1495359-1495378 | MS.gene52855:CDS | 15.0% |
| !!! | TATTGATAGTTTAAACTATT+GGG | - | chr3.3:1495900-1495919 | MS.gene52855:intron | 15.0% |
| !!! | TATTTTATTTGTATTCCTTT+TGG | - | chr3.3:1498762-1498781 | MS.gene52855:intron | 15.0% |
| !!! | TTATTGATAGTTTAAACTAT+TGG | - | chr3.3:1495899-1495918 | MS.gene52855:intron | 15.0% |
| !!! | TTCTCATTGTTTTAATTTAA+TGG | - | chr3.3:1498915-1498934 | MS.gene52855:intron | 15.0% |
| !!! | TTTAGCATTTTTTAATATTG+AGG | - | chr3.3:1498182-1498201 | MS.gene52855:CDS | 15.0% |
| !! | AACAATAACTTATATGCATT+TGG | + | chr3.3:1497889-1497908 | None:intergenic | 20.0% |
| !! | AACTATCAATAATAACAAGT+TGG | + | chr3.3:1495891-1495910 | None:intergenic | 20.0% |
| !! | AATCACTAAATTATAGAATG+GGG | - | chr3.3:1498097-1498116 | MS.gene52855:CDS | 20.0% |
| !! | AATTCCAGTTAGTATATAAT+TGG | - | chr3.3:1498891-1498910 | MS.gene52855:intron | 20.0% |
| !! | AATTTGTGATGATTTATAAC+AGG | - | chr3.3:1497606-1497625 | MS.gene52855:intron | 20.0% |
| !! | AGAAACTAAATTAGTAAAAG+GGG | - | chr3.3:1497847-1497866 | MS.gene52855:intron | 20.0% |
| !! | ATATAATCATTTCAAAGTGT+TGG | + | chr3.3:1495453-1495472 | None:intergenic | 20.0% |
| !! | CAACATACATAAAATATAAG+TGG | + | chr3.3:1495814-1495833 | None:intergenic | 20.0% |
| !! | GAATAAAATTTATCACTGAA+AGG | + | chr3.3:1496949-1496968 | None:intergenic | 20.0% |
| !! | GACACTAATATTTATGAAAT+TGG | + | chr3.3:1496814-1496833 | None:intergenic | 20.0% |
| !! | GTAATATTAATTCTCCATAA+CGG | + | chr3.3:1499000-1499019 | None:intergenic | 20.0% |
| !! | TAAGTTTCAGAAATATCAAA+CGG | + | chr3.3:1496509-1496528 | None:intergenic | 20.0% |
| !! | TAATATTAATTCTCCATAAC+GGG | + | chr3.3:1498999-1499018 | None:intergenic | 20.0% |
| !! | TGTTATAAATCATCACAAAT+TGG | + | chr3.3:1497607-1497626 | None:intergenic | 20.0% |
| !! | TTTCATGCTTTATAAGAAAA+TGG | - | chr3.3:1498670-1498689 | MS.gene52855:CDS | 20.0% |
| !!! | AACTATGCATTTTTTAATAG+CGG | - | chr3.3:1498805-1498824 | MS.gene52855:intron | 20.0% |
| !!! | TATATTTTATGTATGTTGCT+TGG | - | chr3.3:1495816-1495835 | MS.gene52855:intron | 20.0% |
| !!! | TTAAGAAGCATATTTACAAA+TGG | + | chr3.3:1496836-1496855 | None:intergenic | 20.0% |
| ! | AATATGAAGTGTGTTTAAAG+AGG | - | chr3.3:1497165-1497184 | MS.gene52855:intron | 25.0% |
| ! | ACAACCTTTATTGATGTTTA+TGG | - | chr3.3:1498965-1498984 | MS.gene52855:intron | 25.0% |
| ! | ATAAAAACCTGTCATGTATT+AGG | + | chr3.3:1495714-1495733 | None:intergenic | 25.0% |
| ! | CAACCTTTATTGATGTTTAT+GGG | - | chr3.3:1498966-1498985 | MS.gene52855:intron | 25.0% |
| ! | CATTACATTAGTGACAAATA+TGG | + | chr3.3:1497054-1497073 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAAAGAACACA+GGG | + | chr3.3:1497517-1497536 | None:intergenic | 25.0% |
| ! | TACATCTATGTTCTAACTAT+TGG | + | chr3.3:1495647-1495666 | None:intergenic | 25.0% |
| ! | TATATACATATTTGCTCTTC+AGG | - | chr3.3:1498229-1498248 | MS.gene52855:intron | 25.0% |
| ! | TATGTTAAATCTCCATCAAA+CGG | + | chr3.3:1497017-1497036 | None:intergenic | 25.0% |
| ! | TATTTGTCACTAATGTAATG+AGG | - | chr3.3:1497054-1497073 | MS.gene52855:intron | 25.0% |
| ! | TGCATAGTTCAAGAAAATAT+AGG | + | chr3.3:1498794-1498813 | None:intergenic | 25.0% |
| ! | TGTAATCAGTTATCATATCA+AGG | + | chr3.3:1497826-1497845 | None:intergenic | 25.0% |
| ! | TTAAAAGAAGAAAAGAACAC+AGG | + | chr3.3:1497518-1497537 | None:intergenic | 25.0% |
| ! | TTACTAACTACTAACTTTAG+AGG | + | chr3.3:1498310-1498329 | None:intergenic | 25.0% |
| ! | TTATTGTGAATAGCTGAATT+TGG | - | chr3.3:1499577-1499596 | MS.gene52855:intron | 25.0% |
| ! | TTGAGAAATGTAAAATCGAA+AGG | + | chr3.3:1495073-1495092 | None:intergenic | 25.0% |
| !! | AAAGACTATTTTCACAAAGT+GGG | + | chr3.3:1495763-1495782 | None:intergenic | 25.0% |
| !! | ATTTTATGCAGTTGAAATGA+AGG | - | chr3.3:1495845-1495864 | MS.gene52855:intron | 25.0% |
| !! | GTAATTTTCTCAACAATTGA+AGG | - | chr3.3:1495303-1495322 | MS.gene52855:CDS | 25.0% |
| !! | TAATACATGACAGGTTTTTA+TGG | - | chr3.3:1495713-1495732 | MS.gene52855:intron | 25.0% |
| !! | TGATTGTTAATTTTCTTCGT+AGG | - | chr3.3:1495193-1495212 | MS.gene52855:intron | 25.0% |
| !! | TTTTATGCAGTTGAAATGAA+GGG | - | chr3.3:1495846-1495865 | MS.gene52855:intron | 25.0% |
| !! | TTTTATTCCATTTTGCTAGA+AGG | - | chr3.3:1496961-1496980 | MS.gene52855:intron | 25.0% |
| !!! | ACTAATATTTTTTGAGGAGT+CGG | - | chr3.3:1496363-1496382 | MS.gene52855:intron | 25.0% |
| !!! | ATTGGCACTAATATTTTTTG+AGG | - | chr3.3:1496357-1496376 | MS.gene52855:intron | 25.0% |
| !!! | GATTTGCTCTTTTGAATTTT+TGG | - | chr3.3:1496316-1496335 | MS.gene52855:intron | 25.0% |
| !!! | TTATTTCTGGACCTTTTTTA+TGG | - | chr3.3:1497283-1497302 | MS.gene52855:intron | 25.0% |
| AAAAAATGGAAATGAGCCAA+AGG | + | chr3.3:1499081-1499100 | None:intergenic | 30.0% | |
| AAGTGAATTACTCACTTTAG+AGG | - | chr3.3:1498444-1498463 | MS.gene52855:intron | 30.0% | |
| AATTATACGAACTTGGAATC+AGG | - | chr3.3:1496189-1496208 | MS.gene52855:intron | 30.0% | |
| AATTATCATACTCTTCCGTT+TGG | + | chr3.3:1495946-1495965 | None:intergenic | 30.0% | |
| ACCACAAGGTTTAAATGAAT+TGG | + | chr3.3:1495285-1495304 | None:intergenic | 30.0% | |
| ACTTCATATTCAACCAATGA+AGG | + | chr3.3:1497155-1497174 | None:intergenic | 30.0% | |
| AGATTACATCTGCATTAGTT+GGG | - | chr3.3:1497393-1497412 | MS.gene52855:CDS | 30.0% | |
| ATAATCAATTACTAGTGTCG+TGG | - | chr3.3:1497546-1497565 | MS.gene52855:intron | 30.0% | |
| ATCATCACAAATTGGACAAT+TGG | + | chr3.3:1497599-1497618 | None:intergenic | 30.0% | |
| ATTTCTTTGGTTACGATAGT+AGG | - | chr3.3:1497313-1497332 | MS.gene52855:CDS | 30.0% | |
| CAACCCATAAACATCAATAA+AGG | + | chr3.3:1498972-1498991 | None:intergenic | 30.0% | |
| CAGTTTGATCAAACTAGTAA+AGG | + | chr3.3:1498547-1498566 | None:intergenic | 30.0% | |
| CCAAAGATAAACCATAAAAC+TGG | + | chr3.3:1495690-1495709 | None:intergenic | 30.0% | |
| CTACAGGAGCAATAAAAAAA+TGG | + | chr3.3:1499095-1499114 | None:intergenic | 30.0% | |
| CTAGAAGGAAAAAATGAAGA+TGG | + | chr3.3:1496293-1496312 | None:intergenic | 30.0% | |
| GAACATGACGACTTTAATAT+AGG | + | chr3.3:1498261-1498280 | None:intergenic | 30.0% | |
| GAAGCCAATTATATACTAAC+TGG | + | chr3.3:1498898-1498917 | None:intergenic | 30.0% | |
| GCAAAATTGTGATAGAATGT+TGG | + | chr3.3:1495157-1495176 | None:intergenic | 30.0% | |
| GCTATTCACAATAAAACCAT+TGG | + | chr3.3:1499571-1499590 | None:intergenic | 30.0% | |
| GTGTATATAGATTACATTGC+TGG | - | chr3.3:1498029-1498048 | MS.gene52855:intron | 30.0% | |
| TAATGTTGTAGAGACATTGT+TGG | - | chr3.3:1496714-1496733 | MS.gene52855:intron | 30.0% | |
| TAGTGTCTGTAGTTTATTTC+TGG | - | chr3.3:1497270-1497289 | MS.gene52855:intron | 30.0% | |
| TATATGACAATGTGAACCTT+TGG | - | chr3.3:1499062-1499081 | MS.gene52855:intron | 30.0% | |
| TCCAATTCATTTAAACCTTG+TGG | - | chr3.3:1495281-1495300 | MS.gene52855:CDS | 30.0% | |
| TCCAGACATATATCCTATAA+AGG | - | chr3.3:1496253-1496272 | MS.gene52855:intron | 30.0% | |
| TCTTGAGTTACTTACTTGTT+TGG | - | chr3.3:1495473-1495492 | MS.gene52855:intron | 30.0% | |
| TGAACAACATCTTCAAGTAA+TGG | + | chr3.3:1498126-1498145 | None:intergenic | 30.0% | |
| TGATGTGATATGTGATCAAA+TGG | - | chr3.3:1497700-1497719 | MS.gene52855:intron | 30.0% | |
| TGATTGTTGTCATAACTACA+AGG | - | chr3.3:1496691-1496710 | MS.gene52855:CDS | 30.0% | |
| TTATAGGATATATGTCTGGA+TGG | + | chr3.3:1496253-1496272 | None:intergenic | 30.0% | |
| TTATCTTGATGCATGTCAAT+TGG | - | chr3.3:1496339-1496358 | MS.gene52855:intron | 30.0% | |
| TTCCTTAAGTCTATCAACTT+CGG | + | chr3.3:1497360-1497379 | None:intergenic | 30.0% | |
| TTGATCAGTTATATCCAACA+AGG | + | chr3.3:1497638-1497657 | None:intergenic | 30.0% | |
| TTGTTGAGAAAATTACCACA+AGG | + | chr3.3:1495299-1495318 | None:intergenic | 30.0% | |
| TTTATCACTGAAAGGAACAT+AGG | + | chr3.3:1496941-1496960 | None:intergenic | 30.0% | |
| ! | AAATATAGGCTTTAGCCAAA+AGG | + | chr3.3:1498780-1498799 | None:intergenic | 30.0% |
| ! | ATTGGACATTTTGTGATCTT+CGG | - | chr3.3:1497235-1497254 | MS.gene52855:intron | 30.0% |
| ! | CAAAGACTATTTTCACAAAG+TGG | + | chr3.3:1495764-1495783 | None:intergenic | 30.0% |
| ! | CTGTCCATTTGAAGTATTTA+AGG | - | chr3.3:1499709-1499728 | MS.gene52855:CDS | 30.0% |
| ! | GTTAATTTTCTTCGTAGGTA+CGG | - | chr3.3:1495198-1495217 | MS.gene52855:intron | 30.0% |
| ! | TCATTTTCTGCTTACAGTTT+AGG | + | chr3.3:1495512-1495531 | None:intergenic | 30.0% |
| !! | ATGTCAGAGTTATTTTCCAA+TGG | - | chr3.3:1499552-1499571 | MS.gene52855:intron | 30.0% |
| !! | CCAGTTTTATGGTTTATCTT+TGG | - | chr3.3:1495687-1495706 | MS.gene52855:intron | 30.0% |
| !! | GATATGGGTTGAATTTTACA+AGG | - | chr3.3:1497417-1497436 | MS.gene52855:intron | 30.0% |
| !! | TTAGCTCTATTGATGTGAAT+TGG | - | chr3.3:1497217-1497236 | MS.gene52855:intron | 30.0% |
| !!! | CATCTTCATTTTTTCCTTCT+AGG | - | chr3.3:1496291-1496310 | MS.gene52855:intron | 30.0% |
| !!! | CTAATATTTTTTGAGGAGTC+GGG | - | chr3.3:1496364-1496383 | MS.gene52855:intron | 30.0% |
| !!! | TGGTTTTATTGCAAAGTAGT+GGG | - | chr3.3:1499269-1499288 | MS.gene52855:intron | 30.0% |
| !!! | TTGGTTTTATTGCAAAGTAG+TGG | - | chr3.3:1499268-1499287 | MS.gene52855:intron | 30.0% |
| AAAAGAGCGGAAATTGTCTT+TGG | - | chr3.3:1496079-1496098 | MS.gene52855:intron | 35.0% | |
| AAAGAAAAGGATAAGGGAGT+TGG | - | chr3.3:1496016-1496035 | MS.gene52855:intron | 35.0% | |
| AAAGAGCAAATCTACCTAGA+AGG | + | chr3.3:1496308-1496327 | None:intergenic | 35.0% | |
| ACTTATGCATCTCTCTTATC+TGG | - | chr3.3:1496524-1496543 | MS.gene52855:intron | 35.0% | |
| AGAACACAGGGAAAATCAAA+AGG | + | chr3.3:1497505-1497524 | None:intergenic | 35.0% | |
| AGAGTTTGACAAAATCCAGA+AGG | - | chr3.3:1499322-1499341 | MS.gene52855:intron | 35.0% | |
| ATATCCTATAAAGGCAACTC+AGG | - | chr3.3:1496262-1496281 | MS.gene52855:intron | 35.0% | |
| ATCTCTCTTATCTGGCAAAT+AGG | - | chr3.3:1496532-1496551 | MS.gene52855:intron | 35.0% | |
| CAAGAACTACAAAAGCTTAC+AGG | + | chr3.3:1499521-1499540 | None:intergenic | 35.0% | |
| CATGCATAACAACTCATTAG+TGG | + | chr3.3:1498362-1498381 | None:intergenic | 35.0% | |
| CTTGTGTTAATAGAGGATGT+CGG | - | chr3.3:1495586-1495605 | MS.gene52855:CDS | 35.0% | |
| GAGATTACATCTGCATTAGT+TGG | - | chr3.3:1497392-1497411 | MS.gene52855:CDS | 35.0% | |
| GAGGAAGAATTATACGAACT+TGG | - | chr3.3:1496182-1496201 | MS.gene52855:intron | 35.0% | |
| GATAGAATGTTGGAAAAACC+TGG | + | chr3.3:1495147-1495166 | None:intergenic | 35.0% | |
| GATGTAATCTCATCCAAGAT+AGG | + | chr3.3:1497383-1497402 | None:intergenic | 35.0% | |
| GATGTAGAGCAAGATTAAGA+AGG | - | chr3.3:1495661-1495680 | MS.gene52855:intron | 35.0% | |
| GCCTTTATAGGATATATGTC+TGG | + | chr3.3:1496257-1496276 | None:intergenic | 35.0% | |
| GTAGGATTTCAGGAAAAAGA+AGG | - | chr3.3:1497331-1497350 | MS.gene52855:CDS | 35.0% | |
| GTGATCTTCGGTATTCTTAT+AGG | - | chr3.3:1497247-1497266 | MS.gene52855:intron | 35.0% | |
| GTTTGCATTGCTAATGCAAA+TGG | - | chr3.3:1495414-1495433 | MS.gene52855:CDS | 35.0% | |
| TAAATGGATGGAAATCTCCT+TGG | - | chr3.3:1496120-1496139 | MS.gene52855:intron | 35.0% | |
| TAATCCTCGTCAAACAAACT+CGG | + | chr3.3:1496230-1496249 | None:intergenic | 35.0% | |
| TAATGTAATGAGGCCTTCAT+TGG | - | chr3.3:1497064-1497083 | MS.gene52855:intron | 35.0% | |
| TAGACTTAAGGAACCTATCT+TGG | - | chr3.3:1497367-1497386 | MS.gene52855:CDS | 35.0% | |
| TATAGATTACATTGCTGGAG+TGG | - | chr3.3:1498034-1498053 | MS.gene52855:intron | 35.0% | |
| TATCAGAAATCCTCTTGTCT+GGG | + | chr3.3:1496743-1496762 | None:intergenic | 35.0% | |
| TCAACTGGATGTTCTTGTAA+GGG | - | chr3.3:1496052-1496071 | MS.gene52855:intron | 35.0% | |
| TCCGACAAAGAAAAGGATAA+GGG | - | chr3.3:1496010-1496029 | MS.gene52855:intron | 35.0% | |
| TCCTTAAGTCTATCAACTTC+GGG | + | chr3.3:1497359-1497378 | None:intergenic | 35.0% | |
| TGAAGATGTTGTTCAATCCA+TGG | - | chr3.3:1498131-1498150 | MS.gene52855:CDS | 35.0% | |
| TGAGCTAATTAAACTAGGAG+AGG | - | chr3.3:1496163-1496182 | MS.gene52855:intron | 35.0% | |
| TGTTGTGATATGCTAACTGT+TGG | - | chr3.3:1498733-1498752 | MS.gene52855:CDS | 35.0% | |
| TTCCATCCATTTAACCAAGA+CGG | + | chr3.3:1496113-1496132 | None:intergenic | 35.0% | |
| TTGGAATCAGGATTAGAGAA+AGG | - | chr3.3:1496201-1496220 | MS.gene52855:intron | 35.0% | |
| TTGTAAGGGATGTAAAAGAG+CGG | - | chr3.3:1496066-1496085 | MS.gene52855:intron | 35.0% | |
| TTGTGTTAATAGAGGATGTC+GGG | - | chr3.3:1495587-1495606 | MS.gene52855:CDS | 35.0% | |
| ! | CAATATTTTCCCAGCAGAAA+AGG | + | chr3.3:1496906-1496925 | None:intergenic | 35.0% |
| ! | CATCCTTGAGGAATTTTAGA+AGG | + | chr3.3:1495258-1495277 | None:intergenic | 35.0% |
| ! | GCGTTTATTCTAAAGGGTTA+TGG | - | chr3.3:1498072-1498091 | MS.gene52855:CDS | 35.0% |
| ! | GGTTTATTTCTTGAAGAGTC+TGG | - | chr3.3:1499198-1499217 | MS.gene52855:intron | 35.0% |
| ! | TAAGAAGGATGCCAGTTTTA+TGG | - | chr3.3:1495676-1495695 | MS.gene52855:intron | 35.0% |
| ! | TCCCTTATCCTTTTCTTTGT+CGG | + | chr3.3:1496014-1496033 | None:intergenic | 35.0% |
| ! | TTCATGTCTCAATTTTGCAG+CGG | + | chr3.3:1496482-1496501 | None:intergenic | 35.0% |
| !! | ACTACAAAAGTACCTCCAAT+GGG | + | chr3.3:1497678-1497697 | None:intergenic | 35.0% |
| !! | GTTCCTTCTAAAATTCCTCA+AGG | - | chr3.3:1495252-1495271 | MS.gene52855:CDS | 35.0% |
| !! | TCTCTGGTTCTTATGTAAAC+AGG | - | chr3.3:1497454-1497473 | MS.gene52855:intron | 35.0% |
| !! | TTGGAGGCGTTTATTCTAAA+GGG | - | chr3.3:1498066-1498085 | MS.gene52855:CDS | 35.0% |
| !! | TTTAGCTCTCTCACATAAAC+AGG | - | chr3.3:1497932-1497951 | MS.gene52855:intron | 35.0% |
| AAACCAAGCAGACATGAGAA+TGG | + | chr3.3:1499183-1499202 | None:intergenic | 40.0% | |
| AAATCTCAGCAAGATGTCAC+TGG | + | chr3.3:1496669-1496688 | None:intergenic | 40.0% | |
| AACCAAGCAGACATGAGAAT+GGG | + | chr3.3:1499182-1499201 | None:intergenic | 40.0% | |
| AATCCAGAAGGAGAAACCTT+TGG | - | chr3.3:1499334-1499353 | MS.gene52855:intron | 40.0% | |
| AGAGTTCCGTCTTGGTTAAA+TGG | - | chr3.3:1496104-1496123 | MS.gene52855:intron | 40.0% | |
| AGCATGTTGTTACCAGCAAA+AGG | + | chr3.3:1499413-1499432 | None:intergenic | 40.0% | |
| AGCCTCCACAGAAAAGAAAA+TGG | - | chr3.3:1499369-1499388 | MS.gene52855:intron | 40.0% | |
| AGGGAAAATCAAAAGGAGCT+GGG | + | chr3.3:1497498-1497517 | None:intergenic | 40.0% | |
| ATCCATGGAGCAAGCTATTA+AGG | - | chr3.3:1498146-1498165 | MS.gene52855:CDS | 40.0% | |
| ATGTTGGAAAAACCTGGAGA+CGG | + | chr3.3:1495141-1495160 | None:intergenic | 40.0% | |
| ATTTCTTGAAGAGTCTGGTG+AGG | - | chr3.3:1499203-1499222 | MS.gene52855:intron | 40.0% | |
| CAAGCTATTAAGGCTGAAGA+AGG | - | chr3.3:1498156-1498175 | MS.gene52855:CDS | 40.0% | |
| CAGCACCATGCATATTTCAA+GGG | + | chr3.3:1498480-1498499 | None:intergenic | 40.0% | |
| CAGGTTCTGTGTTGAACTTA+TGG | - | chr3.3:1497951-1497970 | MS.gene52855:intron | 40.0% | |
| CATCACAACTCAACCAATGA+AGG | + | chr3.3:1497080-1497099 | None:intergenic | 40.0% | |
| CCTGTAGAAAAACATGTTCC+TGG | - | chr3.3:1499108-1499127 | MS.gene52855:intron | 40.0% | |
| CTACAAAAGCTTACAGGCAT+TGG | + | chr3.3:1499515-1499534 | None:intergenic | 40.0% | |
| CTCAACTGGATGTTCTTGTA+AGG | - | chr3.3:1496051-1496070 | MS.gene52855:intron | 40.0% | |
| CTCCACAGAAAAGAAAATGG+CGG | - | chr3.3:1499372-1499391 | MS.gene52855:intron | 40.0% | |
| CTCCGACAAAGAAAAGGATA+AGG | - | chr3.3:1496009-1496028 | MS.gene52855:intron | 40.0% | |
| CTTGTCCCTTGAAATATGCA+TGG | - | chr3.3:1498472-1498491 | MS.gene52855:intron | 40.0% | |
| CTTTGGACCTAATACATGAC+AGG | - | chr3.3:1495704-1495723 | MS.gene52855:intron | 40.0% | |
| GCGGCACTTCAATTTAATCA+TGG | + | chr3.3:1496463-1496482 | None:intergenic | 40.0% | |
| GGCATATTACATCATCTCTC+TGG | - | chr3.3:1497438-1497457 | MS.gene52855:intron | 40.0% | |
| GGGAAAATATTGAAGACCGT+GGG | - | chr3.3:1496914-1496933 | MS.gene52855:intron | 40.0% | |
| GGTTACGATAGTAGGATTTC+AGG | - | chr3.3:1497321-1497340 | MS.gene52855:CDS | 40.0% | |
| GTATCAGAAATCCTCTTGTC+TGG | + | chr3.3:1496744-1496763 | None:intergenic | 40.0% | |
| TAGTGCTATGTTACATTCCC+AGG | - | chr3.3:1495968-1495987 | MS.gene52855:intron | 40.0% | |
| TCCACAGAAAAGAAAATGGC+GGG | - | chr3.3:1499373-1499392 | MS.gene52855:intron | 40.0% | |
| TCTATTAACACAAGTCAGCG+AGG | + | chr3.3:1495580-1495599 | None:intergenic | 40.0% | |
| TGAATTGGAGTACATCCTTG+AGG | + | chr3.3:1495270-1495289 | None:intergenic | 40.0% | |
| TGCAAGATACAACCTCCAAA+AGG | + | chr3.3:1499042-1499061 | None:intergenic | 40.0% | |
| TGGGAAAATATTGAAGACCG+TGG | - | chr3.3:1496913-1496932 | MS.gene52855:intron | 40.0% | |
| TTAATAGAGGATGTCGGGTT+TGG | - | chr3.3:1495592-1495611 | MS.gene52855:CDS | 40.0% | |
| TTCCGTCTTGGTTAAATGGA+TGG | - | chr3.3:1496108-1496127 | MS.gene52855:intron | 40.0% | |
| ! | CCAGGAACATGTTTTTCTAC+AGG | + | chr3.3:1499111-1499130 | None:intergenic | 40.0% |
| ! | CTTCATTGGTTGAGTTGTGA+TGG | - | chr3.3:1497078-1497097 | MS.gene52855:CDS | 40.0% |
| ! | GGATAATTTGTCAGCTCAAC+TGG | - | chr3.3:1496037-1496056 | MS.gene52855:intron | 40.0% |
| ! | TATGGGTTGAAATCCCGTTA+TGG | - | chr3.3:1498983-1499002 | MS.gene52855:intron | 40.0% |
| ! | TATTTTCCCAGCAGAAAAGG+TGG | + | chr3.3:1496903-1496922 | None:intergenic | 40.0% |
| ! | TCGTTGTGTTATTCACTGCA+GGG | - | chr3.3:1499668-1499687 | MS.gene52855:CDS | 40.0% |
| ! | TTCGTTGTGTTATTCACTGC+AGG | - | chr3.3:1499667-1499686 | MS.gene52855:CDS | 40.0% |
| ! | TTTCTTTTCTGTGGAGGCTT+TGG | + | chr3.3:1499368-1499387 | None:intergenic | 40.0% |
| !! | AAAGCTTACAGGCATTGGAA+TGG | + | chr3.3:1499510-1499529 | None:intergenic | 40.0% |
| !! | AAGCTTACAGGCATTGGAAT+GGG | + | chr3.3:1499509-1499528 | None:intergenic | 40.0% |
| !! | ACCCGAAGTTGATAGACTTA+AGG | - | chr3.3:1497355-1497374 | MS.gene52855:CDS | 40.0% |
| !! | ATAACAGGAAGCATCCTTGT+TGG | - | chr3.3:1497621-1497640 | MS.gene52855:intron | 40.0% |
| !! | CTTGGAGGCGTTTATTCTAA+AGG | - | chr3.3:1498065-1498084 | MS.gene52855:CDS | 40.0% |
| !! | GAAAGCACCTTCTAGCAAAA+TGG | + | chr3.3:1496971-1496990 | None:intergenic | 40.0% |
| !! | GACTACAAAAGTACCTCCAA+TGG | + | chr3.3:1497679-1497698 | None:intergenic | 40.0% |
| !! | GCTTTGAAAAAGCAAGACTC+CGG | - | chr3.3:1499133-1499152 | MS.gene52855:intron | 40.0% |
| !! | TCGCTGACTTGTGTTAATAG+AGG | - | chr3.3:1495579-1495598 | MS.gene52855:CDS | 40.0% |
| !! | TGGCATTGATTGATCAATGC+AGG | - | chr3.3:1495733-1495752 | MS.gene52855:intron | 40.0% |
| !! | TTTGGAATGGGTCTTTTCAG+TGG | - | chr3.3:1496584-1496603 | MS.gene52855:CDS | 40.0% |
| CAGGGAAAATCAAAAGGAGC+TGG | + | chr3.3:1497499-1497518 | None:intergenic | 45.0% | |
| CAGTTTCTGCATGAGCAAAC+CGG | + | chr3.3:1499155-1499174 | None:intergenic | 45.0% | |
| CCACAGAAAAGAAAATGGCG+GGG | - | chr3.3:1499374-1499393 | MS.gene52855:intron | 45.0% | |
| CCAGCACCATGCATATTTCA+AGG | + | chr3.3:1498481-1498500 | None:intergenic | 45.0% | |
| CCTTGAAATATGCATGGTGC+TGG | - | chr3.3:1498478-1498497 | MS.gene52855:CDS | 45.0% | |
| CTATGTTACATTCCCAGGCA+AGG | - | chr3.3:1495973-1495992 | MS.gene52855:intron | 45.0% | |
| CTCACCTGAGTTGCCTTTAT+AGG | + | chr3.3:1496269-1496288 | None:intergenic | 45.0% | |
| CTCGTTCTCCGACAAAGAAA+AGG | - | chr3.3:1496003-1496022 | MS.gene52855:intron | 45.0% | |
| CTGCATTAGTTGGGCGATAT+GGG | - | chr3.3:1497402-1497421 | MS.gene52855:CDS | 45.0% | |
| GAGGAGTCAAGTTCGTCTTA+AGG | + | chr3.3:1498291-1498310 | None:intergenic | 45.0% | |
| GGCGGTGAGCTAATTAAACT+AGG | - | chr3.3:1496158-1496177 | MS.gene52855:intron | 45.0% | |
| TAGTGCTGTGGCATTTGGAA+TGG | - | chr3.3:1496571-1496590 | MS.gene52855:intron | 45.0% | |
| TATTCACTGCAGGGTTGTCA+TGG | - | chr3.3:1499677-1499696 | MS.gene52855:CDS | 45.0% | |
| TCTGCATTAGTTGGGCGATA+TGG | - | chr3.3:1497401-1497420 | MS.gene52855:CDS | 45.0% | |
| TGAAAGGAACATAGGACCCA+CGG | + | chr3.3:1496933-1496952 | None:intergenic | 45.0% | |
| TTCAGTGGCAATGGAACTCT+TGG | - | chr3.3:1496599-1496618 | MS.gene52855:CDS | 45.0% | |
| ! | AGTGCTGTGGCATTTGGAAT+GGG | - | chr3.3:1496572-1496591 | MS.gene52855:intron | 45.0% |
| ! | ATGGGTCTTTTCAGTGGCAA+TGG | - | chr3.3:1496590-1496609 | MS.gene52855:CDS | 45.0% |
| ! | CGAGCATGTTTTATCCCCTT+TGG | + | chr3.3:1496408-1496427 | None:intergenic | 45.0% |
| ! | GTGTAGTCTTTTCAGCCCAT+TGG | - | chr3.3:1497660-1497679 | MS.gene52855:intron | 45.0% |
| ! | GTTTCCGAGTTTGTTTGACG+AGG | - | chr3.3:1496223-1496242 | MS.gene52855:intron | 45.0% |
| ! | GTTTTATCCCCTTTGGACCT+GGG | + | chr3.3:1496401-1496420 | None:intergenic | 45.0% |
| ! | TAGTCTTTTCAGCCCATTGG+AGG | - | chr3.3:1497663-1497682 | MS.gene52855:intron | 45.0% |
| ! | TGTTTTATCCCCTTTGGACC+TGG | + | chr3.3:1496402-1496421 | None:intergenic | 45.0% |
| ! | TTGTCTGTCATGCCGTTTGA+TGG | - | chr3.3:1497002-1497021 | MS.gene52855:intron | 45.0% |
| !! | AGCCTTAATAGCTTGCTCCA+TGG | + | chr3.3:1498151-1498170 | None:intergenic | 45.0% |
| !! | AGCTTACAGGCATTGGAATG+GGG | + | chr3.3:1499508-1499527 | None:intergenic | 45.0% |
| !! | CGCCATTTTCTTTTCTGTGG+AGG | + | chr3.3:1499374-1499393 | None:intergenic | 45.0% |
| !! | TTGTTGGTTTCCCAGACAAG+AGG | - | chr3.3:1496730-1496749 | MS.gene52855:intron | 45.0% |
| !!! | CTTGCTTTTTCAAAGCTGCC+AGG | + | chr3.3:1499129-1499148 | None:intergenic | 45.0% |
| !!! | AATTTTATAAATTTCAATTT+TGG | - | chr3.3:1499249-1499268 | MS.gene52855:intron | 5.0% |
| CCTTGGCAAGGAAGGCTTAA+AGG | - | chr3.3:1496137-1496156 | MS.gene52855:intron | 50.0% | |
| CCTTTAAGCCTTCCTTGCCA+AGG | + | chr3.3:1496140-1496159 | None:intergenic | 50.0% | |
| CTAACCGCTTCTTGGCCAAA+CGG | - | chr3.3:1495928-1495947 | MS.gene52855:intron | 50.0% | |
| CTGACGCAGGACAACTATAC+AGG | + | chr3.3:1499439-1499458 | None:intergenic | 50.0% | |
| CTGTATAGTTGTCCTGCGTC+AGG | - | chr3.3:1499437-1499456 | MS.gene52855:intron | 50.0% | |
| GCTCCAAAGGTTTCTCCTTC+TGG | + | chr3.3:1499340-1499359 | None:intergenic | 50.0% | |
| GGAAATCTCCTTGGCAAGGA+AGG | - | chr3.3:1496129-1496148 | MS.gene52855:intron | 50.0% | |
| GGATGGAAATCTCCTTGGCA+AGG | - | chr3.3:1496125-1496144 | MS.gene52855:intron | 50.0% | |
| GGCAATGGAACTCTTGGAAC+TGG | - | chr3.3:1496605-1496624 | MS.gene52855:CDS | 50.0% | |
| GTCCCATTCTCATGTCTGCT+TGG | - | chr3.3:1499177-1499196 | MS.gene52855:intron | 50.0% | |
| TCAGCTAGTGCTGTGGCATT+TGG | - | chr3.3:1496566-1496585 | MS.gene52855:intron | 50.0% | |
| TCTTCCGTTTGGCCAAGAAG+CGG | + | chr3.3:1495935-1495954 | None:intergenic | 50.0% | |
| TGGCAAGGAAGGCTTAAAGG+CGG | - | chr3.3:1496140-1496159 | MS.gene52855:intron | 50.0% | |
| TTACATTCCCAGGCAAGGCA+TGG | - | chr3.3:1495978-1495997 | MS.gene52855:intron | 50.0% | |
| TTGGAAAAACCTGGAGACGG+TGG | + | chr3.3:1495138-1495157 | None:intergenic | 50.0% | |
| TTTGAGGAGTCGGGAAACAC+TGG | - | chr3.3:1496373-1496392 | MS.gene52855:intron | 50.0% | |
| TTTGGCCAAGAAGCGGTTAG+TGG | + | chr3.3:1495928-1495947 | None:intergenic | 50.0% | |
| ! | AGAGGATGTCGGGTTTGGTA+AGG | - | chr3.3:1495597-1495616 | MS.gene52855:CDS | 50.0% |
| ! | CACATGCCACCTTTTCTGCT+GGG | - | chr3.3:1496894-1496913 | MS.gene52855:intron | 50.0% |
| ! | CTTTGGAGAGAGTTCCGTCT+TGG | - | chr3.3:1496096-1496115 | MS.gene52855:intron | 50.0% |
| ! | GATGTCGGGTTTGGTAAGGA+GGG | - | chr3.3:1495601-1495620 | MS.gene52855:CDS | 50.0% |
| !! | CCCCGCCATTTTCTTTTCTG+TGG | + | chr3.3:1499377-1499396 | None:intergenic | 50.0% |
| !! | CTTTTCTGTGGAGGCTTTGG+AGG | + | chr3.3:1499365-1499384 | None:intergenic | 50.0% |
| !!! | CTTTTAGCTTTGCCTGACGC+AGG | + | chr3.3:1499452-1499471 | None:intergenic | 50.0% |
| AACATCTCTCCACCGTCTCC+AGG | - | chr3.3:1495126-1495145 | MS.gene52855:intron | 55.0% | |
| AACGAGTTCCATGCCTTGCC+TGG | + | chr3.3:1495989-1496008 | None:intergenic | 55.0% | |
| ACAGCACTAGCTGATGCTCG+GGG | + | chr3.3:1496560-1496579 | None:intergenic | 55.0% | |
| ACGAGTTCCATGCCTTGCCT+GGG | + | chr3.3:1495988-1496007 | None:intergenic | 55.0% | |
| CACAGCACTAGCTGATGCTC+GGG | + | chr3.3:1496561-1496580 | None:intergenic | 55.0% | |
| CCACAGCACTAGCTGATGCT+CGG | + | chr3.3:1496562-1496581 | None:intergenic | 55.0% | |
| CCAGCAGAAAAGGTGGCATG+TGG | + | chr3.3:1496896-1496915 | None:intergenic | 55.0% | |
| GCTGGAGTGGACAGATGACT+TGG | - | chr3.3:1498047-1498066 | MS.gene52855:CDS | 55.0% | |
| GGTGGCATGTGGAGATTGTG+TGG | + | chr3.3:1496885-1496904 | None:intergenic | 55.0% | |
| ! | AAAATGGCGGGGTAGCAGTG+TGG | - | chr3.3:1499385-1499404 | MS.gene52855:intron | 55.0% |
| ! | ACTGGTTCCCAGGTCCAAAG+GGG | - | chr3.3:1496391-1496410 | MS.gene52855:intron | 55.0% |
| ! | AGCAGTGTGGCTCCTTTTGC+TGG | - | chr3.3:1499398-1499417 | MS.gene52855:intron | 55.0% |
| ! | CCACATGCCACCTTTTCTGC+TGG | - | chr3.3:1496893-1496912 | MS.gene52855:intron | 55.0% |
| ! | GGAGTGGACAGATGACTTGG+AGG | - | chr3.3:1498050-1498069 | MS.gene52855:CDS | 55.0% |
| ! | GGATGTCGGGTTTGGTAAGG+AGG | - | chr3.3:1495600-1495619 | MS.gene52855:CDS | 55.0% |
| !! | ACACTGGTTCCCAGGTCCAA+AGG | - | chr3.3:1496389-1496408 | MS.gene52855:intron | 55.0% |
| !! | CACTGGTTCCCAGGTCCAAA+GGG | - | chr3.3:1496390-1496409 | MS.gene52855:intron | 55.0% |
| !! | GGCTTTGGAGGTAGCTCCAA+AGG | + | chr3.3:1499353-1499372 | None:intergenic | 55.0% |
| CCGAGCATCAGCTAGTGCTG+TGG | - | chr3.3:1496559-1496578 | MS.gene52855:intron | 60.0% | |
| !! | GTCGGGAAACACTGGTTCCC+AGG | - | chr3.3:1496381-1496400 | MS.gene52855:intron | 60.0% |
| GGGCGCCACTAACCGCTTCT+TGG | - | chr3.3:1495920-1495939 | MS.gene52855:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 1495029 | 1499730 | 1495029 | ID=MS.gene52855 |
| chr3.3 | mRNA | 1495029 | 1499730 | 1495029 | ID=MS.gene52855.t1;Parent=MS.gene52855 |
| chr3.3 | exon | 1499612 | 1499730 | 1499612 | ID=MS.gene52855.t1.exon1;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1499612 | 1499730 | 1499612 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1499457 | 1499544 | 1499457 | ID=MS.gene52855.t1.exon2;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1499457 | 1499544 | 1499457 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1498476 | 1498769 | 1498476 | ID=MS.gene52855.t1.exon3;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1498476 | 1498769 | 1498476 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1498047 | 1498205 | 1498047 | ID=MS.gene52855.t1.exon4;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1498047 | 1498205 | 1498047 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1497284 | 1497424 | 1497284 | ID=MS.gene52855.t1.exon5;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1497284 | 1497424 | 1497284 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1497075 | 1497131 | 1497075 | ID=MS.gene52855.t1.exon6;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1497075 | 1497131 | 1497075 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1496582 | 1496720 | 1496582 | ID=MS.gene52855.t1.exon7;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1496582 | 1496720 | 1496582 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1495540 | 1495644 | 1495540 | ID=MS.gene52855.t1.exon8;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1495540 | 1495644 | 1495540 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1495239 | 1495435 | 1495239 | ID=MS.gene52855.t1.exon9;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1495239 | 1495435 | 1495239 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| chr3.3 | exon | 1495029 | 1495070 | 1495029 | ID=MS.gene52855.t1.exon10;Parent=MS.gene52855.t1 |
| chr3.3 | CDS | 1495029 | 1495070 | 1495029 | ID=cds.MS.gene52855.t1;Parent=MS.gene52855.t1 |
| Gene Sequence |
| Protein sequence |
