Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36672.t1 | XP_013444255.1 | 99.4 | 637 | 4 | 0 | 1 | 637 | 1 | 637 | 0.00E+00 | 1275.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36672.t1 | P28724 | 46.1 | 451 | 235 | 3 | 191 | 637 | 3 | 449 | 4.0e-116 | 420.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36672.t1 | A0A072TLH9 | 99.4 | 637 | 4 | 0 | 1 | 637 | 1 | 637 | 0.0e+00 | 1275.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene36672 | 0.815661 | 8.25E-52 | -1.69E-46 |
| MS.gene05016 | MS.gene36672 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene36672 | 0.805492 | 1.30E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene36672 | 0.812817 | 3.50E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene36672 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene36672 | 0.827112 | 1.87E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene36672 | 0.829938 | 3.89E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene36672 | 0.830442 | 2.93E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene36672 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene050780 | MS.gene36672 | 0.812658 | 3.80E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene36672 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene36672 | 0.84282 | 2.05E-58 | -1.69E-46 |
| MS.gene052496 | MS.gene36672 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene36672 | 0.817406 | 3.35E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene36672 | 0.849076 | 4.08E-60 | -1.69E-46 |
| MS.gene052856 | MS.gene36672 | 0.806258 | 8.98E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene36672 | 0.802993 | 4.31E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene36672 | 0.810895 | 9.18E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene36672 | 0.806318 | 8.72E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene36672 | 0.843647 | 1.23E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene36672 | 0.807782 | 4.27E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene36672 | 0.834024 | 3.81E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene36672 | 0.827315 | 1.67E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene36672 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene36672 | 0.829628 | 4.63E-55 | -1.69E-46 |
| MS.gene056760 | MS.gene36672 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene36672 | 0.808705 | 2.72E-50 | -1.69E-46 |
| MS.gene058982 | MS.gene36672 | 0.811844 | 5.71E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene36672 | 0.834571 | 2.78E-56 | -1.69E-46 |
| MS.gene059725 | MS.gene36672 | 0.850218 | 1.96E-60 | -1.69E-46 |
| MS.gene059937 | MS.gene36672 | 0.820229 | 7.66E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene36672 | 0.811018 | 8.63E-51 | -1.69E-46 |
| MS.gene060480 | MS.gene36672 | 0.857438 | 1.63E-62 | -1.69E-46 |
| MS.gene060637 | MS.gene36672 | 0.808646 | 2.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36672.t1 | MTR_8g015600 | 99.372 | 637 | 4 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1330 |
| MS.gene36672.t1 | MTR_8g015600 | 98.430 | 637 | 4 | 1 | 1 | 637 | 1 | 631 | 0.0 | 1310 |
| MS.gene36672.t1 | MTR_1g021885 | 63.203 | 231 | 57 | 3 | 1 | 231 | 1 | 203 | 9.90e-86 | 267 |
| MS.gene36672.t1 | MTR_8g015610 | 52.632 | 247 | 39 | 6 | 1 | 235 | 1 | 181 | 4.70e-56 | 205 |
| MS.gene36672.t1 | MTR_5g013470 | 27.154 | 383 | 266 | 4 | 214 | 596 | 6 | 375 | 2.44e-42 | 158 |
| MS.gene36672.t1 | MTR_6g029460 | 27.346 | 373 | 258 | 4 | 224 | 596 | 16 | 375 | 2.07e-41 | 155 |
| MS.gene36672.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 224 | 596 | 16 | 375 | 9.32e-40 | 151 |
| MS.gene36672.t1 | MTR_4g099320 | 24.740 | 384 | 276 | 3 | 212 | 595 | 4 | 374 | 4.31e-39 | 149 |
| MS.gene36672.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 224 | 596 | 97 | 456 | 7.17e-39 | 150 |
| MS.gene36672.t1 | MTR_6g029460 | 28.522 | 291 | 198 | 3 | 224 | 514 | 16 | 296 | 1.08e-30 | 122 |
| MS.gene36672.t1 | MTR_6g029460 | 25.839 | 298 | 211 | 3 | 299 | 596 | 2 | 289 | 1.94e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36672.t1 | AT1G51720 | 79.121 | 637 | 133 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1053 |
| MS.gene36672.t1 | AT1G51720 | 79.121 | 637 | 133 | 0 | 1 | 637 | 1 | 637 | 0.0 | 1053 |
| MS.gene36672.t1 | AT1G51720 | 79.818 | 550 | 111 | 0 | 1 | 550 | 1 | 550 | 0.0 | 943 |
| MS.gene36672.t1 | AT1G51720 | 80.313 | 447 | 88 | 0 | 1 | 447 | 1 | 447 | 0.0 | 758 |
| MS.gene36672.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 224 | 596 | 16 | 375 | 1.80e-41 | 155 |
| MS.gene36672.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 224 | 596 | 16 | 375 | 1.80e-41 | 155 |
| MS.gene36672.t1 | AT5G18170 | 27.346 | 373 | 258 | 4 | 224 | 596 | 16 | 375 | 2.14e-40 | 152 |
| MS.gene36672.t1 | AT3G03910 | 26.810 | 373 | 260 | 3 | 224 | 596 | 16 | 375 | 2.41e-39 | 150 |
| MS.gene36672.t1 | AT3G03910 | 27.826 | 345 | 236 | 3 | 224 | 568 | 16 | 347 | 3.60e-38 | 145 |
| MS.gene36672.t1 | AT5G07440 | 29.452 | 292 | 196 | 4 | 224 | 515 | 16 | 297 | 2.14e-31 | 124 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGGCTGCAACTGATTT+TGG | 0.156312 | 8.2:+77740866 | MS.gene36672:CDS |
| TGCTCTGTCTGCAGGGAATT+TGG | 0.169315 | 8.2:+77734237 | MS.gene36672:CDS |
| GAAGAGATTGATTTAGAAAT+TGG | 0.192598 | 8.2:+77733961 | MS.gene36672:CDS |
| TAAAGCTTTAATCAGATTCT+AGG | 0.205926 | 8.2:+77739037 | MS.gene36672:intron |
| ATCAGATTCTAGGGGATATT+TGG | 0.211286 | 8.2:+77739047 | MS.gene36672:intron |
| GCTTTGTCTCCTTACAAATT+AGG | 0.215159 | 8.2:+77736786 | MS.gene36672:CDS |
| GATAAGCCTGTTTATGTAAA+AGG | 0.241106 | 8.2:+77734399 | MS.gene36672:CDS |
| CCTGCAATGGCTGCTGGTGC+TGG | 0.241262 | 8.2:+77739552 | MS.gene36672:CDS |
| CTGCTCAAAGCCAAGGAATT+TGG | 0.261198 | 8.2:-77735832 | None:intergenic |
| TTCTTGAAGCGACACTAAAA+AGG | 0.266131 | 8.2:+77735421 | MS.gene36672:CDS |
| GCTCTTCCCATTTCAGTATC+AGG | 0.282241 | 8.2:+77738831 | MS.gene36672:CDS |
| TCACAGGACCAAGAATATTT+TGG | 0.284186 | 8.2:+77738110 | MS.gene36672:CDS |
| ATAAAGAACTCAAAGGATTA+AGG | 0.294116 | 8.2:+77738467 | MS.gene36672:CDS |
| AGGAGACAAAGCATTCTTTA+AGG | 0.296981 | 8.2:-77736775 | None:intergenic |
| GGACTTTGAATCTAAATTAC+AGG | 0.316783 | 8.2:+77740511 | MS.gene36672:CDS |
| TCAATCTGATGCCATGAATT+TGG | 0.325693 | 8.2:+77739336 | MS.gene36672:CDS |
| GCCATGAATTTGGTCAATTC+AGG | 0.332081 | 8.2:+77739346 | MS.gene36672:CDS |
| AAACATCGAAGAAATCCTTA+TGG | 0.334740 | 8.2:+77734264 | MS.gene36672:CDS |
| TGTATTACCTGATACTGAAA+TGG | 0.341274 | 8.2:-77738838 | None:intergenic |
| CAGACAGAGCAGAAAATTCT+TGG | 0.352843 | 8.2:-77734225 | None:intergenic |
| ACAGGTGAAAAGGAAGAAAA+AGG | 0.355624 | 8.2:+77734131 | MS.gene36672:CDS |
| ACTAATCGGTGCACCGTTGC+GGG | 0.357035 | 8.2:+77734020 | MS.gene36672:CDS |
| GAGTTCCATGGGTGGATGAT+AGG | 0.364667 | 8.2:+77735706 | MS.gene36672:CDS |
| GACTTATCAAAGAGCTATAA+AGG | 0.368168 | 8.2:+77740850 | MS.gene36672:CDS |
| GGGGTGAGACACATGTTAAC+CGG | 0.369167 | 8.2:+77735727 | MS.gene36672:CDS |
| GTTGCTCCTGCAATGGCTGC+TGG | 0.370497 | 8.2:+77739546 | MS.gene36672:CDS |
| TTTGGTAACACAACACTAAT+CGG | 0.386652 | 8.2:+77734006 | MS.gene36672:CDS |
| CCAGCACCAGCAGCCATTGC+AGG | 0.387387 | 8.2:-77739552 | None:intergenic |
| TCATGAGGTTGAATTCATTC+AGG | 0.390287 | 8.2:+77735449 | MS.gene36672:CDS |
| GTTGTTATATGTCAGGGCTT+TGG | 0.392307 | 8.2:+77741241 | MS.gene36672:intron |
| GGAGAAGATGATCCTTCATT+TGG | 0.396097 | 8.2:+77733988 | MS.gene36672:CDS |
| GTACTTTCAGTTACCTTGTC+AGG | 0.403064 | 8.2:-77736987 | None:intergenic |
| ACCTGAATTGACCAAATTCA+TGG | 0.407273 | 8.2:-77739347 | None:intergenic |
| CACTTGGTTGTGAGGGAGAT+TGG | 0.408537 | 8.2:+77733937 | MS.gene36672:CDS |
| GGATATTTGGTTGATGAAGA+TGG | 0.409334 | 8.2:+77739060 | MS.gene36672:CDS |
| GAGCCAGACCAAAATATTCT+TGG | 0.410444 | 8.2:-77738118 | None:intergenic |
| CAATGGCTGCTGGTGCTGGA+GGG | 0.414076 | 8.2:+77739556 | MS.gene36672:CDS |
| TAATAGTTTGCTTCATAAAG+AGG | 0.415011 | 8.2:+77734335 | MS.gene36672:CDS |
| TAACATCATGGAACGATTGT+TGG | 0.415278 | 8.2:+77735659 | MS.gene36672:CDS |
| CTTCTGCAGGGAACTTTCAC+AGG | 0.417650 | 8.2:+77738094 | MS.gene36672:intron |
| TTGAACTGCGTCAGTGGTAC+AGG | 0.425896 | 8.2:-77739499 | None:intergenic |
| TTAAGCATTACCAAATTCCT+TGG | 0.426681 | 8.2:+77735822 | MS.gene36672:CDS |
| CGACTGCCTTCATTCCCATA+AGG | 0.429268 | 8.2:-77734279 | None:intergenic |
| AGTAGCTTCGGGTCGAAGAC+TGG | 0.430133 | 8.2:-77738140 | None:intergenic |
| AAAGCTTTAATCAGATTCTA+GGG | 0.431340 | 8.2:+77739038 | MS.gene36672:intron |
| CAGTCCATAGCCAGTAGCTT+CGG | 0.431834 | 8.2:-77738152 | None:intergenic |
| GCAATGGCTGCTGGTGCTGG+AGG | 0.432301 | 8.2:+77739555 | MS.gene36672:CDS |
| AGTTCCATGGGTGGATGATA+GGG | 0.434799 | 8.2:+77735707 | MS.gene36672:CDS |
| TTAGAGAAGCTAATTGCATA+TGG | 0.436088 | 8.2:+77738807 | MS.gene36672:CDS |
| GGTACAATTTAACCAGTCAA+TGG | 0.436257 | 8.2:+77735758 | MS.gene36672:CDS |
| CCTTGCATGTAGGTTGTGGC+TGG | 0.440511 | 8.2:+77740440 | MS.gene36672:intron |
| TATGTCAGGGCTTTGGTACA+TGG | 0.442170 | 8.2:+77741248 | MS.gene36672:intron |
| GGCGTTGGTACTCGCGAGAT+GGG | 0.447541 | 8.2:+77737103 | MS.gene36672:CDS |
| CTCAGAACCAACAGGTGAAA+AGG | 0.449596 | 8.2:+77734121 | MS.gene36672:CDS |
| AACTATTATTATGTTCTTCG+AGG | 0.452851 | 8.2:-77734320 | None:intergenic |
| ATGAGTGCAGTTTGATGAAC+TGG | 0.455477 | 8.2:+77740480 | MS.gene36672:CDS |
| AACATCGAAGAAATCCTTAT+GGG | 0.456133 | 8.2:+77734265 | MS.gene36672:CDS |
| TGAATTCATTCAGGCGGTCC+AGG | 0.456482 | 8.2:+77735458 | MS.gene36672:CDS |
| TTTCAGTTATGTTAACATCA+TGG | 0.462367 | 8.2:+77735647 | MS.gene36672:intron |
| GGACCTTCCGTCAGAGGAGA+TGG | 0.462416 | 8.2:+77737081 | MS.gene36672:intron |
| AATGGCTGCTGGTGCTGGAG+GGG | 0.463671 | 8.2:+77739557 | MS.gene36672:CDS |
| TAAAAGATGGAGAGAGGAAT+GGG | 0.464772 | 8.2:+77734158 | MS.gene36672:CDS |
| CTCTACATGGACCCATTGAC+TGG | 0.465205 | 8.2:-77735770 | None:intergenic |
| TCATGTCAGCTAGCATGAGC+TGG | 0.469008 | 8.2:-77738444 | None:intergenic |
| AGATCACACCTTTCTGTCCA+TGG | 0.471438 | 8.2:-77739280 | None:intergenic |
| CAAATTCCTTGGCTTTGAGC+AGG | 0.474838 | 8.2:+77735833 | MS.gene36672:CDS |
| AGTCTTCGACCCGAAGCTAC+TGG | 0.480626 | 8.2:+77738142 | MS.gene36672:CDS |
| GGTTGTCGTATACTAATAGA+AGG | 0.482254 | 8.2:+77739367 | MS.gene36672:CDS |
| AATGGGCAGACACTTACAAA+TGG | 0.483770 | 8.2:+77734175 | MS.gene36672:CDS |
| CAAGAGCTTGAACTACCTCC+TGG | 0.486357 | 8.2:-77735476 | None:intergenic |
| AGATGTGTAGTGAGTGGTTC+TGG | 0.486916 | 8.2:+77738765 | MS.gene36672:intron |
| AGATATGTCTCAGAACCAAC+AGG | 0.493372 | 8.2:+77734113 | MS.gene36672:CDS |
| CACTAATCGGTGCACCGTTG+CGG | 0.495422 | 8.2:+77734019 | MS.gene36672:CDS |
| AGTGTTGTGTTACCAAATGA+AGG | 0.496093 | 8.2:-77734000 | None:intergenic |
| TGTTCTTGTTGCTCCTGCAA+TGG | 0.500894 | 8.2:+77739539 | MS.gene36672:CDS |
| GTATTACCTGATACTGAAAT+GGG | 0.501354 | 8.2:-77738837 | None:intergenic |
| AGAAATCCTTATGGGAATGA+AGG | 0.503780 | 8.2:+77734273 | MS.gene36672:CDS |
| AAACGAATGCCACCTCTACA+TGG | 0.505421 | 8.2:-77735783 | None:intergenic |
| AAGCTCAGCATAGAAGTTTG+CGG | 0.507170 | 8.2:+77739121 | MS.gene36672:CDS |
| GGGCGTTGGTACTCGCGAGA+TGG | 0.507748 | 8.2:+77737102 | MS.gene36672:CDS |
| GCTGCACCTCCTAATTTGTA+AGG | 0.515123 | 8.2:-77736795 | None:intergenic |
| GCTCAAGCCATGACTGATCA+AGG | 0.517213 | 8.2:+77741299 | MS.gene36672:CDS |
| GGCTTGAGCAATAGTTAGAA+AGG | 0.521355 | 8.2:-77741285 | None:intergenic |
| CAAGCTCTTGAGAGAGTCAT+CGG | 0.522020 | 8.2:+77735489 | MS.gene36672:CDS |
| TACAAATTAGGAGGTGCAGC+TGG | 0.523027 | 8.2:+77736798 | MS.gene36672:CDS |
| CCGTCAGAGGAGATGGGCGT+TGG | 0.525355 | 8.2:+77737088 | MS.gene36672:CDS |
| GTACAATTTAACCAGTCAAT+GGG | 0.525972 | 8.2:+77735759 | MS.gene36672:CDS |
| GGACAGTATAGACGTCTAGT+TGG | 0.527995 | 8.2:+77737136 | MS.gene36672:CDS |
| ACATCTCACACATGAAACTC+TGG | 0.532354 | 8.2:-77736950 | None:intergenic |
| TTGTCTCCTTACAAATTAGG+AGG | 0.539458 | 8.2:+77736789 | MS.gene36672:CDS |
| CGACCCGAAGCTACTGGCTA+TGG | 0.539992 | 8.2:+77738148 | MS.gene36672:CDS |
| ATGGGCAGACACTTACAAAT+GGG | 0.541305 | 8.2:+77734176 | MS.gene36672:CDS |
| GCAAGCACAAAGGCATCACT+TGG | 0.542952 | 8.2:+77733921 | MS.gene36672:CDS |
| GGGTGAGACACATGTTAACC+GGG | 0.544984 | 8.2:+77735728 | MS.gene36672:CDS |
| ACTATTATTATGTTCTTCGA+GGG | 0.547023 | 8.2:-77734319 | None:intergenic |
| AATTTAGATTCAAAGTCCTC+CGG | 0.549512 | 8.2:-77740506 | None:intergenic |
| AAGCAAAACCATGGACAGAA+AGG | 0.550979 | 8.2:+77739272 | MS.gene36672:CDS |
| GGTTGTTAAAAGATGGAGAG+AGG | 0.553521 | 8.2:+77734152 | MS.gene36672:CDS |
| AGCCTCCAAAGATAAAATCA+TGG | 0.554528 | 8.2:+77734374 | MS.gene36672:CDS |
| TTCATCCCTCCTCCAATGGT+TGG | 0.555575 | 8.2:-77733868 | None:intergenic |
| TTGCTGCCAACCATTGGAGG+AGG | 0.555674 | 8.2:+77733862 | MS.gene36672:CDS |
| TACACAGCCTTGATCAGTCA+TGG | 0.556808 | 8.2:-77741306 | None:intergenic |
| ATTGATTTAGAAATTGGACC+TGG | 0.560041 | 8.2:+77733967 | MS.gene36672:CDS |
| ATGTTGCTGCCAACCATTGG+AGG | 0.561385 | 8.2:+77733859 | MS.gene36672:CDS |
| TTAAAAGATGGAGAGAGGAA+TGG | 0.567654 | 8.2:+77734157 | MS.gene36672:CDS |
| CAGTTTGATGAACTGGTCAC+CGG | 0.570708 | 8.2:+77740487 | MS.gene36672:CDS |
| GTAATGCTTAAATTCATCGA+CGG | 0.572109 | 8.2:-77735810 | None:intergenic |
| AAAGGCATCACTTGGTTGTG+AGG | 0.572466 | 8.2:+77733929 | MS.gene36672:CDS |
| CGCCCATCTCCTCTGACGGA+AGG | 0.572515 | 8.2:-77737084 | None:intergenic |
| CAGAACTTGAACTGCGTCAG+TGG | 0.574397 | 8.2:-77739505 | None:intergenic |
| TGAATGTTGCTGCCAACCAT+TGG | 0.574459 | 8.2:+77733856 | None:intergenic |
| GCATGGTGAGAGCAAGCAGA+TGG | 0.575621 | 8.2:+77734059 | MS.gene36672:CDS |
| AATGAAGGATCATCTTCTCC+AGG | 0.576398 | 8.2:-77733985 | None:intergenic |
| AGGAGGGATGAATTCTGCAT+TGG | 0.577230 | 8.2:+77733879 | MS.gene36672:CDS |
| AGTCCATAGCCAGTAGCTTC+GGG | 0.580884 | 8.2:-77738151 | None:intergenic |
| CATGTCAGCTAGCATGAGCT+GGG | 0.581909 | 8.2:-77738443 | None:intergenic |
| GACCTTCCGTCAGAGGAGAT+GGG | 0.585077 | 8.2:+77737082 | MS.gene36672:CDS |
| TAAATTGTACCCGAAACCCC+CGG | 0.588382 | 8.2:-77735746 | None:intergenic |
| CGAAGCTACTGGCTATGGAC+TGG | 0.589990 | 8.2:+77738153 | MS.gene36672:CDS |
| AAGCTCTTGAGAGAGTCATC+GGG | 0.590180 | 8.2:+77735490 | MS.gene36672:CDS |
| AAGGCATCACTTGGTTGTGA+GGG | 0.595050 | 8.2:+77733930 | MS.gene36672:CDS |
| GTAATACCTGCTCAAAGCCA+AGG | 0.595738 | 8.2:-77735839 | None:intergenic |
| AGAATTCATCCCTCCTCCAA+TGG | 0.597721 | 8.2:-77733872 | None:intergenic |
| GTTCCATGGGTGGATGATAG+GGG | 0.598700 | 8.2:+77735708 | MS.gene36672:CDS |
| CAGTCAATGGGTCCATGTAG+AGG | 0.599685 | 8.2:+77735771 | MS.gene36672:CDS |
| GAATCTTCTGCAGAAGAGCA+TGG | 0.611081 | 8.2:+77734042 | MS.gene36672:CDS |
| CAGTTACCTTGTCAGGACCA+AGG | 0.617519 | 8.2:-77736980 | None:intergenic |
| ATAATATTTGGACCGAGCGT+AGG | 0.620110 | 8.2:-77739245 | None:intergenic |
| TCTGCAGAAGATTCCCGCAA+CGG | 0.624839 | 8.2:-77734033 | None:intergenic |
| TGAATGAATTCAACCTCATG+AGG | 0.627402 | 8.2:-77735447 | None:intergenic |
| ATATTAGGACCTTCCGTCAG+AGG | 0.628155 | 8.2:+77737075 | MS.gene36672:intron |
| CCAACGCCCATCTCCTCTGA+CGG | 0.628777 | 8.2:-77737088 | None:intergenic |
| TCATTACCTTGGTCCTGACA+AGG | 0.631247 | 8.2:+77736974 | MS.gene36672:CDS |
| TGAGAGCAAGCAGATGGCGA+CGG | 0.631636 | 8.2:+77734065 | MS.gene36672:CDS |
| CTTATGTTGATGTGAAAGAC+GGG | 0.633856 | 8.2:+77734199 | MS.gene36672:CDS |
| ATTATGATGAAGCAAAACCA+TGG | 0.633955 | 8.2:+77739263 | MS.gene36672:CDS |
| TGTGAGATGTATCATTACCT+TGG | 0.636503 | 8.2:+77736963 | MS.gene36672:CDS |
| AAATTAGGAGGTGCAGCTGG+TGG | 0.637075 | 8.2:+77736801 | MS.gene36672:CDS |
| TGAACTGCGTCAGTGGTACA+GGG | 0.638519 | 8.2:-77739498 | None:intergenic |
| CTGACGCAGTTCAAGTTCTG+AGG | 0.640777 | 8.2:+77739508 | MS.gene36672:CDS |
| TCAATGGGTCCATGTAGAGG+TGG | 0.644762 | 8.2:+77735774 | MS.gene36672:CDS |
| AAGCTTTAATCAGATTCTAG+GGG | 0.648960 | 8.2:+77739039 | MS.gene36672:intron |
| TCACCCCTATCATCCACCCA+TGG | 0.658377 | 8.2:-77735711 | None:intergenic |
| TGAGGTTGAATTCATTCAGG+CGG | 0.659201 | 8.2:+77735452 | MS.gene36672:CDS |
| TGCTGCCAACCATTGGAGGA+GGG | 0.661328 | 8.2:+77733863 | MS.gene36672:CDS |
| ACTATTCAAAGACCTACGCT+CGG | 0.665115 | 8.2:+77739233 | MS.gene36672:CDS |
| GCGTTGGTACTCGCGAGATG+GGG | 0.667931 | 8.2:+77737104 | MS.gene36672:CDS |
| TTTGATGAACTGGTCACCGG+AGG | 0.674578 | 8.2:+77740490 | MS.gene36672:CDS |
| GACATGAATAAAGAACTCAA+AGG | 0.675264 | 8.2:+77738460 | MS.gene36672:CDS |
| GCTTATGTTGATGTGAAAGA+CGG | 0.678174 | 8.2:+77734198 | MS.gene36672:CDS |
| TCCTGCAGATGTGTAGTGAG+TGG | 0.690117 | 8.2:+77738759 | MS.gene36672:intron |
| ATTCATTCAGGCGGTCCAGG+AGG | 0.690825 | 8.2:+77735461 | MS.gene36672:CDS |
| ATTTGATTCAGCAAGCACAA+AGG | 0.692477 | 8.2:+77733911 | MS.gene36672:CDS |
| GGTGAGACACATGTTAACCG+GGG | 0.713266 | 8.2:+77735729 | MS.gene36672:CDS |
| GTGAGACACATGTTAACCGG+GGG | 0.714421 | 8.2:+77735730 | MS.gene36672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 77733859 | 77741331 | 77733859 | ID=MS.gene36672 |
| chr8.2 | mRNA | 77733859 | 77741331 | 77733859 | ID=MS.gene36672.t1;Parent=MS.gene36672 |
| chr8.2 | exon | 77733859 | 77734420 | 77733859 | ID=MS.gene36672.t1.exon1;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77733859 | 77734420 | 77733859 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77735394 | 77735523 | 77735394 | ID=MS.gene36672.t1.exon2;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77735394 | 77735523 | 77735394 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77735653 | 77735854 | 77735653 | ID=MS.gene36672.t1.exon3;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77735653 | 77735854 | 77735653 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77736774 | 77736860 | 77736774 | ID=MS.gene36672.t1.exon4;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77736774 | 77736860 | 77736774 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77736936 | 77736995 | 77736936 | ID=MS.gene36672.t1.exon5;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77736936 | 77736995 | 77736936 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77737082 | 77737168 | 77737082 | ID=MS.gene36672.t1.exon6;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77737082 | 77737168 | 77737082 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77738103 | 77738174 | 77738103 | ID=MS.gene36672.t1.exon7;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77738103 | 77738174 | 77738103 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77738433 | 77738488 | 77738433 | ID=MS.gene36672.t1.exon8;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77738433 | 77738488 | 77738433 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77738767 | 77738852 | 77738767 | ID=MS.gene36672.t1.exon9;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77738767 | 77738852 | 77738767 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77739052 | 77739142 | 77739052 | ID=MS.gene36672.t1.exon10;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77739052 | 77739142 | 77739052 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77739231 | 77739388 | 77739231 | ID=MS.gene36672.t1.exon11;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77739231 | 77739388 | 77739231 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77739487 | 77739578 | 77739487 | ID=MS.gene36672.t1.exon12;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77739487 | 77739578 | 77739487 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77740452 | 77740532 | 77740452 | ID=MS.gene36672.t1.exon13;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77740452 | 77740532 | 77740452 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77740836 | 77740909 | 77740836 | ID=MS.gene36672.t1.exon14;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77740836 | 77740909 | 77740836 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| chr8.2 | exon | 77741256 | 77741331 | 77741256 | ID=MS.gene36672.t1.exon15;Parent=MS.gene36672.t1 |
| chr8.2 | CDS | 77741256 | 77741331 | 77741256 | ID=cds.MS.gene36672.t1;Parent=MS.gene36672.t1 |
| Gene Sequence |
| Protein sequence |
