Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97896.t1 | RHN51901.1 | 96.9 | 483 | 15 | 0 | 1 | 483 | 146 | 628 | 5.80E-268 | 932.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97896.t1 | Q21657 | 26.7 | 206 | 133 | 5 | 22 | 219 | 41 | 236 | 1.0e-10 | 69.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97896.t1 | A0A396HH98 | 96.9 | 483 | 15 | 0 | 1 | 483 | 146 | 628 | 4.2e-268 | 932.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene97896 | 0.815338 | 9.73E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene97896 | 0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene97896 | -0.812957 | 3.26E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene97896 | 0.832276 | 1.04E-55 | -1.69E-46 |
| MS.gene050629 | MS.gene97896 | -0.807022 | 6.19E-50 | -1.69E-46 |
| MS.gene051184 | MS.gene97896 | 0.804043 | 2.61E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene97896 | 0.832861 | 7.42E-56 | -1.69E-46 |
| MS.gene052746 | MS.gene97896 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene97896 | 0.824714 | 6.95E-54 | -1.69E-46 |
| MS.gene055442 | MS.gene97896 | 0.813232 | 2.84E-51 | -1.69E-46 |
| MS.gene056638 | MS.gene97896 | 0.806664 | 7.37E-50 | -1.69E-46 |
| MS.gene056830 | MS.gene97896 | -0.83161 | 1.51E-55 | -1.69E-46 |
| MS.gene056849 | MS.gene97896 | 0.822184 | 2.71E-53 | -1.69E-46 |
| MS.gene056975 | MS.gene97896 | 0.844435 | 7.58E-59 | -1.69E-46 |
| MS.gene05761 | MS.gene97896 | 0.831743 | 1.40E-55 | -1.69E-46 |
| MS.gene058429 | MS.gene97896 | 0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene97896 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene059050 | MS.gene97896 | 0.80004 | 1.74E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene97896 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene97896 | 0.804431 | 2.17E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene97896 | 0.819807 | 9.57E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene97896 | 0.812861 | 3.43E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene97896 | 0.815079 | 1.11E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97896.t1 | MTR_6g464840 | 96.687 | 483 | 16 | 0 | 1 | 483 | 146 | 628 | 0.0 | 966 |
| MS.gene97896.t1 | MTR_6g089580 | 96.480 | 483 | 17 | 0 | 1 | 483 | 146 | 628 | 0.0 | 965 |
| MS.gene97896.t1 | MTR_1g101790 | 70.000 | 510 | 112 | 9 | 1 | 483 | 148 | 643 | 0.0 | 696 |
| MS.gene97896.t1 | MTR_1g101790 | 69.539 | 499 | 111 | 9 | 1 | 472 | 148 | 632 | 0.0 | 674 |
| MS.gene97896.t1 | MTR_4g102620 | 50.501 | 499 | 203 | 11 | 3 | 483 | 143 | 615 | 9.42e-166 | 482 |
| MS.gene97896.t1 | MTR_8g079040 | 51.528 | 229 | 105 | 3 | 4 | 226 | 172 | 400 | 2.00e-70 | 241 |
| MS.gene97896.t1 | MTR_8g079040 | 45.614 | 171 | 79 | 4 | 310 | 466 | 751 | 921 | 4.28e-36 | 142 |
| MS.gene97896.t1 | MTR_8g079020 | 51.092 | 229 | 106 | 3 | 4 | 226 | 172 | 400 | 9.71e-70 | 239 |
| MS.gene97896.t1 | MTR_8g079020 | 43.860 | 171 | 82 | 3 | 310 | 466 | 755 | 925 | 4.23e-34 | 137 |
| MS.gene97896.t1 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 27 | 218 | 134 | 320 | 7.84e-17 | 81.6 |
| MS.gene97896.t1 | MTR_3g099200 | 29.146 | 199 | 122 | 7 | 27 | 218 | 181 | 367 | 1.03e-16 | 82.0 |
| MS.gene97896.t1 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 27 | 208 | 158 | 327 | 9.41e-15 | 75.9 |
| MS.gene97896.t1 | MTR_4g104060 | 28.022 | 182 | 119 | 6 | 27 | 208 | 172 | 341 | 1.04e-14 | 75.9 |
| MS.gene97896.t1 | MTR_4g030930 | 26.761 | 213 | 118 | 8 | 31 | 213 | 34 | 238 | 2.53e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97896.t1 | AT5G51920 | 52.110 | 474 | 165 | 6 | 2 | 472 | 142 | 556 | 1.08e-165 | 480 |
| MS.gene97896.t1 | AT4G22980 | 42.710 | 487 | 214 | 10 | 3 | 478 | 125 | 557 | 6.69e-123 | 370 |
| MS.gene97896.t1 | AT5G66950 | 51.965 | 229 | 104 | 3 | 4 | 226 | 171 | 399 | 1.11e-70 | 241 |
| MS.gene97896.t1 | AT5G66950 | 45.143 | 175 | 91 | 2 | 299 | 468 | 681 | 855 | 2.13e-38 | 149 |
| MS.gene97896.t1 | AT4G37100 | 42.244 | 303 | 163 | 4 | 4 | 300 | 177 | 473 | 1.52e-69 | 238 |
| MS.gene97896.t1 | AT4G37100 | 43.333 | 180 | 92 | 4 | 296 | 465 | 696 | 875 | 1.42e-35 | 141 |
| MS.gene97896.t1 | AT2G23520 | 48.908 | 229 | 111 | 3 | 4 | 226 | 173 | 401 | 5.79e-68 | 234 |
| MS.gene97896.t1 | AT2G23520 | 37.349 | 249 | 116 | 8 | 236 | 465 | 649 | 876 | 1.91e-33 | 135 |
Find 66 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGTGCTACGTCGATTT+TGG | 0.163564 | 6.1:+52699684 | MS.gene97896:CDS |
| TTAAAAGCTTTCTACTCTTT+TGG | 0.183875 | 6.1:-52699267 | None:intergenic |
| GAGCAAGATATCCTTATATT+TGG | 0.191107 | 6.1:+52699491 | MS.gene97896:CDS |
| CTTCCACCGCTTCGCTTTCA+TGG | 0.238873 | 6.1:-52699300 | None:intergenic |
| ATGGATTGTTGCATCATATA+TGG | 0.266349 | 6.1:+52700271 | MS.gene97896:CDS |
| CCTCTATCAAATTTAACTTT+TGG | 0.267902 | 6.1:-52700150 | None:intergenic |
| GCTATACTTATCCAAATATA+AGG | 0.271173 | 6.1:-52699502 | None:intergenic |
| TTGAAGATATCTATAATCTT+TGG | 0.287935 | 6.1:+52700409 | MS.gene97896:CDS |
| GGAGAAAACCCTTCTGGATT+TGG | 0.290344 | 6.1:+52699646 | MS.gene97896:CDS |
| CCTCTTCATTCAAGAGTAAC+AGG | 0.291445 | 6.1:+52699469 | MS.gene97896:CDS |
| CCAAAAGACATGGATTGTTT+TGG | 0.301962 | 6.1:+52699571 | MS.gene97896:CDS |
| CCAAAACAATCCATGTCTTT+TGG | 0.304344 | 6.1:-52699571 | None:intergenic |
| GTATCTCTAGTGAAGATTTA+TGG | 0.311118 | 6.1:+52700126 | MS.gene97896:CDS |
| GTGCGAGGTACTTGATTAAC+TGG | 0.317575 | 6.1:+52700058 | MS.gene97896:CDS |
| TTGAAGACTTTGCTTCTTCA+TGG | 0.320259 | 6.1:+52699106 | MS.gene97896:CDS |
| ACTGTTGTTACTGCTGCATT+AGG | 0.320994 | 6.1:+52700372 | MS.gene97896:CDS |
| GACAAAGATGTCATATAAAA+TGG | 0.322067 | 6.1:-52699796 | None:intergenic |
| TTGGTTGATGCATGTGCATT+AGG | 0.335994 | 6.1:+52699547 | MS.gene97896:CDS |
| AGAGATACCCCTTCGGAGTT+AGG | 0.363465 | 6.1:-52700111 | None:intergenic |
| AGAGAATGGTTGGAATGTTT+TGG | 0.364542 | 6.1:+52699528 | MS.gene97896:CDS |
| TTTAGTATATCCTGCAAAAC+AGG | 0.365144 | 6.1:+52699079 | MS.gene97896:CDS |
| TTGCATTCAATATATTTGAT+TGG | 0.365335 | 6.1:+52700181 | MS.gene97896:CDS |
| AGAAAACTGTTGAAGTTTAA+CGG | 0.366475 | 6.1:+52700502 | MS.gene97896:CDS |
| TCTCCTTCTACGAAATTTGC+AGG | 0.369064 | 6.1:-52699841 | None:intergenic |
| TTAGATCAAGTGGATTCATT+AGG | 0.372557 | 6.1:+52700015 | MS.gene97896:CDS |
| GCAAGTTCAAATCGATGAAA+AGG | 0.379374 | 6.1:+52699942 | MS.gene97896:CDS |
| ATCGGAAAACGATTACTTCA+TGG | 0.389650 | 6.1:+52699189 | MS.gene97896:CDS |
| CAAGAACAAATAAGAAAATC+TGG | 0.394646 | 6.1:-52699610 | None:intergenic |
| AATATATTGAATGCAATTGC+AGG | 0.415602 | 6.1:-52700174 | None:intergenic |
| AGCAATATTTCTATTAGCTA+TGG | 0.416931 | 6.1:+52700252 | MS.gene97896:CDS |
| CCAAAAGTTAAATTTGATAG+AGG | 0.423139 | 6.1:+52700150 | MS.gene97896:CDS |
| CAACCTGCAAATTTCGTAGA+AGG | 0.429244 | 6.1:+52699838 | MS.gene97896:CDS |
| TTCTTCTTCATCTAAATGTA+AGG | 0.434934 | 6.1:-52699773 | None:intergenic |
| AGATAAGTATGCCGATGAAA+AGG | 0.438948 | 6.1:+52700299 | MS.gene97896:CDS |
| CATGAATTACCTTAACATAT+CGG | 0.439358 | 6.1:+52699171 | MS.gene97896:CDS |
| ATCTGAAATTTGTGAAATTG+AGG | 0.449128 | 6.1:+52699909 | MS.gene97896:CDS |
| GGAAGCGATGATTAGTTCTT+CGG | 0.461033 | 6.1:+52699318 | MS.gene97896:CDS |
| TTGGAAACAAATTCTTCTGT+AGG | 0.464329 | 6.1:+52699703 | MS.gene97896:CDS |
| TTCAATATATTTGATTGGAA+AGG | 0.488166 | 6.1:+52700186 | MS.gene97896:CDS |
| GTATAGCGAAAGAGAATGGT+TGG | 0.497937 | 6.1:+52699518 | MS.gene97896:CDS |
| GATAAGTATGCCGATGAAAA+GGG | 0.499232 | 6.1:+52700300 | MS.gene97896:CDS |
| CAAGTTCAAATCGATGAAAA+GGG | 0.520584 | 6.1:+52699943 | MS.gene97896:CDS |
| GAATTCAGTCAACAAAATTG+AGG | 0.533657 | 6.1:+52699392 | MS.gene97896:CDS |
| TCAATTTCACAAATTTCAGA+TGG | 0.534494 | 6.1:-52699907 | None:intergenic |
| GTTGACTGAATTCTCAACCT+TGG | 0.534849 | 6.1:-52699382 | None:intergenic |
| AAAACTTTGATATTGAATGT+AGG | 0.544123 | 6.1:+52699989 | MS.gene97896:CDS |
| ATGTAGGTGCTTAGATCAAG+TGG | 0.549169 | 6.1:+52700005 | MS.gene97896:CDS |
| ATAAGTATAGCGAAAGAGAA+TGG | 0.550020 | 6.1:+52699514 | MS.gene97896:CDS |
| AATTTGTGAAATTGAGGAGG+TGG | 0.569049 | 6.1:+52699915 | MS.gene97896:CDS |
| CCTGTTACTCTTGAATGAAG+AGG | 0.573904 | 6.1:-52699469 | None:intergenic |
| AAGACTTTGCTTCTTCATGG+TGG | 0.585075 | 6.1:+52699109 | MS.gene97896:CDS |
| TTAAGCATCCTAACTCCGAA+GGG | 0.587179 | 6.1:+52700103 | MS.gene97896:CDS |
| CTTAAGCATCCTAACTCCGA+AGG | 0.590433 | 6.1:+52700102 | MS.gene97896:CDS |
| TGACCATGAAAGCGAAGCGG+TGG | 0.596891 | 6.1:+52699297 | MS.gene97896:CDS |
| AAAAGGCAACCAAATCCAGA+AGG | 0.598988 | 6.1:-52699655 | None:intergenic |
| CTTCACTAGAGATACCCCTT+CGG | 0.603042 | 6.1:-52700118 | None:intergenic |
| GAGGTACTTGATTAACTGGT+TGG | 0.612614 | 6.1:+52700062 | MS.gene97896:CDS |
| GTCTGAGATGAAAATTGTAG+AGG | 0.625413 | 6.1:+52699867 | MS.gene97896:CDS |
| TGCATTAGGACCAAAAGACA+TGG | 0.636735 | 6.1:+52699561 | MS.gene97896:CDS |
| TGAAATTTGTGAAATTGAGG+AGG | 0.643306 | 6.1:+52699912 | MS.gene97896:CDS |
| TTTCACAGCGAATAGAACAT+CGG | 0.643774 | 6.1:+52699213 | MS.gene97896:CDS |
| AAAGGCAACCAAATCCAGAA+GGG | 0.648687 | 6.1:-52699654 | None:intergenic |
| TACTGATCAATGATCGTGCG+AGG | 0.670329 | 6.1:+52700043 | MS.gene97896:CDS |
| AAGGTAAGTATTGAAACTTG+CGG | 0.699855 | 6.1:-52699754 | None:intergenic |
| TAAGCATCCTAACTCCGAAG+GGG | 0.700579 | 6.1:+52700104 | MS.gene97896:CDS |
| TTATGACCATGAAAGCGAAG+CGG | 0.729811 | 6.1:+52699294 | MS.gene97896:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTGATATTGAATGT+AGG | + | chr6.1:52699989-52700008 | MS.gene97896:CDS | 20.0% |
| !! | AAGAAAGATAAAGAAAAAGT+TGG | + | chr6.1:52700345-52700364 | MS.gene97896:CDS | 20.0% |
| !! | AGAAAGAAGAAGAAAAATAA+GGG | + | chr6.1:52699433-52699452 | MS.gene97896:CDS | 20.0% |
| !! | TTCAATATATTTGATTGGAA+AGG | + | chr6.1:52700186-52700205 | MS.gene97896:CDS | 20.0% |
| !! | TTGAAGATATCTATAATCTT+TGG | + | chr6.1:52700409-52700428 | MS.gene97896:CDS | 20.0% |
| !! | TTGCATTCAATATATTTGAT+TGG | + | chr6.1:52700181-52700200 | MS.gene97896:CDS | 20.0% |
| !!! | TGTTCTTGTTATAAAGTTTT+CGG | + | chr6.1:52699625-52699644 | MS.gene97896:CDS | 20.0% |
| ! | AATATATTGAATGCAATTGC+AGG | - | chr6.1:52700177-52700196 | None:intergenic | 25.0% |
| ! | CAAGAACAAATAAGAAAATC+TGG | - | chr6.1:52699613-52699632 | None:intergenic | 25.0% |
| ! | CATGAATTACCTTAACATAT+CGG | + | chr6.1:52699171-52699190 | MS.gene97896:CDS | 25.0% |
| ! | CCAAAAGTTAAATTTGATAG+AGG | + | chr6.1:52700150-52700169 | MS.gene97896:CDS | 25.0% |
| ! | GACAAAGATGTCATATAAAA+TGG | - | chr6.1:52699799-52699818 | None:intergenic | 25.0% |
| ! | GAGAAAGAAGAAGAAAAATA+AGG | + | chr6.1:52699432-52699451 | MS.gene97896:CDS | 25.0% |
| ! | GCTATACTTATCCAAATATA+AGG | - | chr6.1:52699505-52699524 | None:intergenic | 25.0% |
| ! | TCAATTTCACAAATTTCAGA+TGG | - | chr6.1:52699910-52699929 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATCTAAATGTA+AGG | - | chr6.1:52699776-52699795 | None:intergenic | 25.0% |
| ! | TTGCAGGATATACTAAAAAA+CGG | - | chr6.1:52699076-52699095 | None:intergenic | 25.0% |
| !! | AGCAATATTTCTATTAGCTA+TGG | + | chr6.1:52700252-52700271 | MS.gene97896:CDS | 25.0% |
| !! | ATCTGAAATTTGTGAAATTG+AGG | + | chr6.1:52699909-52699928 | MS.gene97896:CDS | 25.0% |
| !! | TAGCACTTTTCTTGATAAAA+AGG | - | chr6.1:52699675-52699694 | None:intergenic | 25.0% |
| !! | TTAAAAGCTTTCTACTCTTT+TGG | - | chr6.1:52699270-52699289 | None:intergenic | 25.0% |
| !!! | CCTCTATCAAATTTAACTTT+TGG | - | chr6.1:52700153-52700172 | None:intergenic | 25.0% |
| ATAAGTATAGCGAAAGAGAA+TGG | + | chr6.1:52699514-52699533 | MS.gene97896:CDS | 30.0% | |
| CAAGTTCAAATCGATGAAAA+GGG | + | chr6.1:52699943-52699962 | MS.gene97896:CDS | 30.0% | |
| GAATTCAGTCAACAAAATTG+AGG | + | chr6.1:52699392-52699411 | MS.gene97896:CDS | 30.0% | |
| GAGCAAGATATCCTTATATT+TGG | + | chr6.1:52699491-52699510 | MS.gene97896:CDS | 30.0% | |
| GTATCTCTAGTGAAGATTTA+TGG | + | chr6.1:52700126-52700145 | MS.gene97896:CDS | 30.0% | |
| TGAAATTTGTGAAATTGAGG+AGG | + | chr6.1:52699912-52699931 | MS.gene97896:CDS | 30.0% | |
| TTGGAAACAAATTCTTCTGT+AGG | + | chr6.1:52699703-52699722 | MS.gene97896:CDS | 30.0% | |
| TTTAGTATATCCTGCAAAAC+AGG | + | chr6.1:52699079-52699098 | MS.gene97896:CDS | 30.0% | |
| ! | AATCGTTTTCCGATATGTTA+AGG | - | chr6.1:52699183-52699202 | None:intergenic | 30.0% |
| ! | ATGGATTGTTGCATCATATA+TGG | + | chr6.1:52700271-52700290 | MS.gene97896:CDS | 30.0% |
| ! | TTAGATCAAGTGGATTCATT+AGG | + | chr6.1:52700015-52700034 | MS.gene97896:CDS | 30.0% |
| !! | AAGGTAAGTATTGAAACTTG+CGG | - | chr6.1:52699757-52699776 | None:intergenic | 30.0% |
| AATTTGTGAAATTGAGGAGG+TGG | + | chr6.1:52699915-52699934 | MS.gene97896:CDS | 35.0% | |
| AGATAAGTATGCCGATGAAA+AGG | + | chr6.1:52700299-52700318 | MS.gene97896:CDS | 35.0% | |
| ATCGGAAAACGATTACTTCA+TGG | + | chr6.1:52699189-52699208 | MS.gene97896:CDS | 35.0% | |
| GATAAGTATGCCGATGAAAA+GGG | + | chr6.1:52700300-52700319 | MS.gene97896:CDS | 35.0% | |
| GCAAGTTCAAATCGATGAAA+AGG | + | chr6.1:52699942-52699961 | MS.gene97896:CDS | 35.0% | |
| TTGAAGACTTTGCTTCTTCA+TGG | + | chr6.1:52699106-52699125 | MS.gene97896:CDS | 35.0% | |
| TTTCACAGCGAATAGAACAT+CGG | + | chr6.1:52699213-52699232 | MS.gene97896:CDS | 35.0% | |
| ! | AGAGAATGGTTGGAATGTTT+TGG | + | chr6.1:52699528-52699547 | MS.gene97896:CDS | 35.0% |
| ! | ATTAGTTCTTCGGAAAAACG+AGG | + | chr6.1:52699328-52699347 | MS.gene97896:CDS | 35.0% |
| ! | CCAAAACAATCCATGTCTTT+TGG | - | chr6.1:52699574-52699593 | None:intergenic | 35.0% |
| ! | CTTCAAATTTCCTGTTTTGC+AGG | - | chr6.1:52699092-52699111 | None:intergenic | 35.0% |
| ! | GTCTGAGATGAAAATTGTAG+AGG | + | chr6.1:52699867-52699886 | MS.gene97896:CDS | 35.0% |
| ! | TAGTACTCTTCCCTTTTCAT+CGG | - | chr6.1:52700313-52700332 | None:intergenic | 35.0% |
| !! | CCAAAAGACATGGATTGTTT+TGG | + | chr6.1:52699571-52699590 | MS.gene97896:CDS | 35.0% |
| !!! | TACTGCTGCATTAGGTTTTT+TGG | + | chr6.1:52700380-52700399 | MS.gene97896:CDS | 35.0% |
| AAAAGGCAACCAAATCCAGA+AGG | - | chr6.1:52699658-52699677 | None:intergenic | 40.0% | |
| AAAGGCAACCAAATCCAGAA+GGG | - | chr6.1:52699657-52699676 | None:intergenic | 40.0% | |
| AAGACTTTGCTTCTTCATGG+TGG | + | chr6.1:52699109-52699128 | MS.gene97896:CDS | 40.0% | |
| ACTGTTGTTACTGCTGCATT+AGG | + | chr6.1:52700372-52700391 | MS.gene97896:CDS | 40.0% | |
| ATGTAGGTGCTTAGATCAAG+TGG | + | chr6.1:52700005-52700024 | MS.gene97896:CDS | 40.0% | |
| CAACCTGCAAATTTCGTAGA+AGG | + | chr6.1:52699838-52699857 | MS.gene97896:CDS | 40.0% | |
| CCTCTTCATTCAAGAGTAAC+AGG | + | chr6.1:52699469-52699488 | MS.gene97896:CDS | 40.0% | |
| CCTGTTACTCTTGAATGAAG+AGG | - | chr6.1:52699472-52699491 | None:intergenic | 40.0% | |
| GTATAGCGAAAGAGAATGGT+TGG | + | chr6.1:52699518-52699537 | MS.gene97896:CDS | 40.0% | |
| GTTGACTGAATTCTCAACCT+TGG | - | chr6.1:52699385-52699404 | None:intergenic | 40.0% | |
| TCTCCTTCTACGAAATTTGC+AGG | - | chr6.1:52699844-52699863 | None:intergenic | 40.0% | |
| TGCATTAGGACCAAAAGACA+TGG | + | chr6.1:52699561-52699580 | MS.gene97896:CDS | 40.0% | |
| TTAAGCATCCTAACTCCGAA+GGG | + | chr6.1:52700103-52700122 | MS.gene97896:CDS | 40.0% | |
| TTATGACCATGAAAGCGAAG+CGG | + | chr6.1:52699294-52699313 | MS.gene97896:CDS | 40.0% | |
| ! | CTATGTCAGCAGAGTTTTCA+TGG | + | chr6.1:52699359-52699378 | MS.gene97896:CDS | 40.0% |
| ! | GAGGTACTTGATTAACTGGT+TGG | + | chr6.1:52700062-52700081 | MS.gene97896:CDS | 40.0% |
| ! | GGAAGCGATGATTAGTTCTT+CGG | + | chr6.1:52699318-52699337 | MS.gene97896:CDS | 40.0% |
| ! | TTGGTTGATGCATGTGCATT+AGG | + | chr6.1:52699547-52699566 | MS.gene97896:CDS | 40.0% |
| !!! | ATCTTTGGTGTTTTGTTGCG+AGG | + | chr6.1:52700424-52700443 | MS.gene97896:CDS | 40.0% |
| !!! | GAAAAGTGCTACGTCGATTT+TGG | + | chr6.1:52699684-52699703 | MS.gene97896:CDS | 40.0% |
| !!! | TCAGATGGTTTTGACACACT+TGG | - | chr6.1:52699895-52699914 | None:intergenic | 40.0% |
| !!! | TGATGCTGATTTTGTCGAGA+AGG | + | chr6.1:52700452-52700471 | MS.gene97896:CDS | 40.0% |
| CTTAAGCATCCTAACTCCGA+AGG | + | chr6.1:52700102-52700121 | MS.gene97896:CDS | 45.0% | |
| CTTCACTAGAGATACCCCTT+CGG | - | chr6.1:52700121-52700140 | None:intergenic | 45.0% | |
| GGAGAAAACCCTTCTGGATT+TGG | + | chr6.1:52699646-52699665 | MS.gene97896:CDS | 45.0% | |
| TAAGCATCCTAACTCCGAAG+GGG | + | chr6.1:52700104-52700123 | MS.gene97896:CDS | 45.0% | |
| TACTGATCAATGATCGTGCG+AGG | + | chr6.1:52700043-52700062 | MS.gene97896:CDS | 45.0% | |
| ! | ATTTTGTCGAGAAGGAGAGG+TGG | + | chr6.1:52700460-52700479 | MS.gene97896:CDS | 45.0% |
| ! | CTGATTTTGTCGAGAAGGAG+AGG | + | chr6.1:52700457-52700476 | MS.gene97896:CDS | 45.0% |
| ! | GTGCGAGGTACTTGATTAAC+TGG | + | chr6.1:52700058-52700077 | MS.gene97896:CDS | 45.0% |
| ! | GTTTTCGGAGAAAACCCTTC+TGG | + | chr6.1:52699640-52699659 | MS.gene97896:CDS | 45.0% |
| !!! | GCGGCTTTTTTTCTTGCACA+AGG | - | chr6.1:52699738-52699757 | None:intergenic | 45.0% |
| AGAGATACCCCTTCGGAGTT+AGG | - | chr6.1:52700114-52700133 | None:intergenic | 50.0% | |
| ! | CAGCAGAGTTTTCATGGCCA+AGG | + | chr6.1:52699365-52699384 | MS.gene97896:CDS | 50.0% |
| ! | GCGAGTTTTTGCACGAGAAC+AGG | - | chr6.1:52700225-52700244 | None:intergenic | 50.0% |
| CTTCCACCGCTTCGCTTTCA+TGG | - | chr6.1:52699303-52699322 | None:intergenic | 55.0% | |
| TGACCATGAAAGCGAAGCGG+TGG | + | chr6.1:52699297-52699316 | MS.gene97896:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 52699070 | 52700521 | 52699070 | ID=MS.gene97896 |
| chr6.1 | mRNA | 52699070 | 52700521 | 52699070 | ID=MS.gene97896.t1;Parent=MS.gene97896 |
| chr6.1 | exon | 52699070 | 52700521 | 52699070 | ID=MS.gene97896.t1.exon1;Parent=MS.gene97896.t1 |
| chr6.1 | CDS | 52699070 | 52700521 | 52699070 | ID=cds.MS.gene97896.t1;Parent=MS.gene97896.t1 |
| Gene Sequence |
| Protein sequence |
