Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20392.t1 | RHN51901.1 | 96.5 | 483 | 16 | 1 | 1 | 482 | 146 | 628 | 3.80E-267 | 930.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20392.t1 | Q21657 | 22.0 | 414 | 253 | 12 | 22 | 428 | 41 | 391 | 4.5e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20392.t1 | A0A396HH98 | 96.5 | 483 | 16 | 1 | 1 | 482 | 146 | 628 | 2.7e-267 | 930.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene20392 | 0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene20392 | 0.818486 | 1.91E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene20392 | -0.803102 | 4.09E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene20392 | 0.826439 | 2.71E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene20392 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene052746 | MS.gene20392 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene20392 | 0.817304 | 3.53E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene20392 | 0.810901 | 9.15E-51 | -1.69E-46 |
| MS.gene056638 | MS.gene20392 | 0.813609 | 2.35E-51 | -1.69E-46 |
| MS.gene056830 | MS.gene20392 | -0.830878 | 2.29E-55 | -1.69E-46 |
| MS.gene056975 | MS.gene20392 | 0.8404 | 8.90E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene20392 | 0.825919 | 3.60E-54 | -1.69E-46 |
| MS.gene058429 | MS.gene20392 | 0.81032 | 1.22E-50 | -1.69E-46 |
| MS.gene058635 | MS.gene20392 | 0.80089 | 1.17E-48 | -1.69E-46 |
| MS.gene058758 | MS.gene20392 | 0.806303 | 8.78E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene20392 | 0.806739 | 7.11E-50 | -1.69E-46 |
| MS.gene060012 | MS.gene20392 | 0.800944 | 1.14E-48 | -1.69E-46 |
| MS.gene060840 | MS.gene20392 | 0.816578 | 5.14E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene20392 | 0.824205 | 9.16E-54 | -1.69E-46 |
| MS.gene060870 | MS.gene20392 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene20392 | 0.80697 | 6.35E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene20392 | 0.812371 | 4.39E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20392.t1 | MTR_6g464840 | 96.273 | 483 | 17 | 1 | 1 | 482 | 146 | 628 | 0.0 | 961 |
| MS.gene20392.t1 | MTR_6g089580 | 96.066 | 483 | 18 | 1 | 1 | 482 | 146 | 628 | 0.0 | 961 |
| MS.gene20392.t1 | MTR_1g101790 | 68.431 | 510 | 119 | 7 | 1 | 482 | 148 | 643 | 0.0 | 694 |
| MS.gene20392.t1 | MTR_1g101790 | 67.936 | 499 | 118 | 7 | 1 | 471 | 148 | 632 | 0.0 | 672 |
| MS.gene20392.t1 | MTR_4g102620 | 50.402 | 498 | 204 | 10 | 3 | 482 | 143 | 615 | 8.06e-167 | 484 |
| MS.gene20392.t1 | MTR_8g079040 | 51.092 | 229 | 105 | 3 | 4 | 225 | 172 | 400 | 3.97e-69 | 238 |
| MS.gene20392.t1 | MTR_8g079040 | 45.614 | 171 | 79 | 4 | 309 | 465 | 751 | 921 | 5.02e-36 | 142 |
| MS.gene20392.t1 | MTR_8g079020 | 50.655 | 229 | 106 | 3 | 4 | 225 | 172 | 400 | 1.63e-68 | 236 |
| MS.gene20392.t1 | MTR_8g079020 | 43.860 | 171 | 82 | 3 | 309 | 465 | 755 | 925 | 4.78e-34 | 136 |
| MS.gene20392.t1 | MTR_3g099200 | 28.788 | 198 | 123 | 6 | 27 | 217 | 134 | 320 | 2.88e-17 | 83.2 |
| MS.gene20392.t1 | MTR_3g099200 | 28.788 | 198 | 123 | 6 | 27 | 217 | 181 | 367 | 4.15e-17 | 83.2 |
| MS.gene20392.t1 | MTR_4g102890 | 29.121 | 182 | 118 | 6 | 27 | 207 | 91 | 262 | 1.61e-15 | 77.0 |
| MS.gene20392.t1 | MTR_4g102890 | 29.121 | 182 | 118 | 6 | 27 | 207 | 126 | 297 | 1.74e-15 | 77.4 |
| MS.gene20392.t1 | MTR_4g102890 | 29.121 | 182 | 118 | 6 | 27 | 207 | 174 | 345 | 2.21e-15 | 77.8 |
| MS.gene20392.t1 | MTR_4g104060 | 27.624 | 181 | 120 | 6 | 27 | 207 | 158 | 327 | 5.83e-14 | 73.6 |
| MS.gene20392.t1 | MTR_4g104060 | 27.624 | 181 | 120 | 6 | 27 | 207 | 172 | 341 | 6.13e-14 | 73.6 |
| MS.gene20392.t1 | MTR_4g030930 | 26.291 | 213 | 118 | 7 | 31 | 212 | 34 | 238 | 5.93e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20392.t1 | AT5G51920 | 51.899 | 474 | 165 | 6 | 2 | 471 | 142 | 556 | 1.34e-164 | 477 |
| MS.gene20392.t1 | AT4G22980 | 41.127 | 479 | 232 | 6 | 3 | 477 | 125 | 557 | 3.72e-122 | 368 |
| MS.gene20392.t1 | AT5G66950 | 51.528 | 229 | 104 | 3 | 4 | 225 | 171 | 399 | 1.86e-69 | 238 |
| MS.gene20392.t1 | AT5G66950 | 45.143 | 175 | 91 | 2 | 298 | 467 | 681 | 855 | 2.75e-38 | 149 |
| MS.gene20392.t1 | AT4G37100 | 49.782 | 229 | 108 | 3 | 4 | 225 | 177 | 405 | 3.24e-68 | 234 |
| MS.gene20392.t1 | AT4G37100 | 42.935 | 184 | 90 | 4 | 296 | 464 | 692 | 875 | 1.50e-35 | 141 |
| MS.gene20392.t1 | AT2G23520 | 48.472 | 229 | 111 | 3 | 4 | 225 | 173 | 401 | 1.07e-66 | 230 |
| MS.gene20392.t1 | AT2G23520 | 37.349 | 249 | 116 | 8 | 235 | 464 | 649 | 876 | 2.67e-33 | 134 |
| MS.gene20392.t1 | AT1G16540 | 27.679 | 224 | 119 | 9 | 24 | 212 | 78 | 293 | 1.56e-13 | 73.6 |
| MS.gene20392.t1 | AT1G16540 | 27.679 | 224 | 119 | 9 | 24 | 212 | 78 | 293 | 1.66e-13 | 73.6 |
| MS.gene20392.t1 | AT1G16540 | 27.679 | 224 | 119 | 9 | 24 | 212 | 78 | 293 | 1.69e-13 | 73.6 |
Find 70 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGTGCTACGTCGATTT+TGG | 0.163564 | 6.2:+61104642 | MS.gene20392:CDS |
| GTTTCTCTGGTGAAGATTTA+TGG | 0.210563 | 6.2:+61105084 | MS.gene20392:CDS |
| CTTCCACCGCTTCGCTTTCA+TGG | 0.238873 | 6.2:-61104261 | None:intergenic |
| ATGGATTGTTGCATCATATA+TGG | 0.266349 | 6.2:+61105229 | MS.gene20392:CDS |
| CCTCTATCAAATTTAACTTT+TGG | 0.267902 | 6.2:-61105108 | None:intergenic |
| GGAGAAAACCCTTCTGGATT+TGG | 0.277617 | 6.2:+61104604 | MS.gene20392:CDS |
| TTGAAGATATCTATAATCTT+TGG | 0.287935 | 6.2:+61105367 | MS.gene20392:CDS |
| CCTCTTCATTCAAGAGTAAC+AGG | 0.291445 | 6.2:+61104427 | MS.gene20392:CDS |
| TTGAAGACTTTGCTTCTTCA+TGG | 0.320259 | 6.2:+61104067 | MS.gene20392:CDS |
| ACTGTTGTTACTGCTGCATT+AGG | 0.320994 | 6.2:+61105330 | MS.gene20392:CDS |
| GAGCAAGATATCCTTATATA+TGG | 0.332050 | 6.2:+61104449 | MS.gene20392:CDS |
| GGGCGAGGTACTTGATTAAC+TGG | 0.333030 | 6.2:+61105016 | MS.gene20392:CDS |
| TTGGTTGATGCATGTGCATT+AGG | 0.335994 | 6.2:+61104505 | MS.gene20392:CDS |
| CCGAAACAATCCATGTCTTT+TGG | 0.337312 | 6.2:-61104529 | None:intergenic |
| GACAAAGACGTCATATAAAA+TGG | 0.346040 | 6.2:-61104754 | None:intergenic |
| GCTATACTAATCCATATATA+AGG | 0.349125 | 6.2:-61104460 | None:intergenic |
| TCTCATTGCTGACTCGAATT+CGG | 0.360721 | 6.2:-61104101 | None:intergenic |
| AGAGAATGGTTGGAATGTTT+TGG | 0.364542 | 6.2:+61104486 | MS.gene20392:CDS |
| TTTAGTATATCCTGCAAAAC+AGG | 0.365144 | 6.2:+61104040 | MS.gene20392:CDS |
| TTGCATTCAATATATTTGAT+TGG | 0.365335 | 6.2:+61105139 | MS.gene20392:CDS |
| AGAAAACTGTTGAAGTTTAA+CGG | 0.366475 | 6.2:+61105460 | MS.gene20392:CDS |
| CAAGAACATATAAGAAAATC+TGG | 0.368304 | 6.2:-61104568 | None:intergenic |
| TTAGATCAAGTGGATTCATT+AGG | 0.372557 | 6.2:+61104973 | MS.gene20392:CDS |
| AGAGAAACCCCTTCTGAGTT+AGG | 0.373849 | 6.2:-61105069 | None:intergenic |
| ATCGGAAAACGATTACTTCA+TGG | 0.389650 | 6.2:+61104150 | MS.gene20392:CDS |
| AATATATTGAATGCAATTGC+AGG | 0.415602 | 6.2:-61105132 | None:intergenic |
| GCCGGTTCAAATCCATGAAA+AGG | 0.416321 | 6.2:+61104900 | MS.gene20392:CDS |
| AGCAATATTTCTATTAGCTA+TGG | 0.416931 | 6.2:+61105210 | MS.gene20392:CDS |
| CCAAAAGTTAAATTTGATAG+AGG | 0.423139 | 6.2:+61105108 | MS.gene20392:CDS |
| TTCTTCTTCATCTAAATGTA+AGG | 0.434934 | 6.2:-61104731 | None:intergenic |
| ATCTCAAATTTGTGAAATTG+AGG | 0.436757 | 6.2:+61104867 | MS.gene20392:CDS |
| AGATAAGTATGCCGATGAAA+AGG | 0.438948 | 6.2:+61105257 | MS.gene20392:CDS |
| CATGAATTACCTTAACATAT+CGG | 0.439358 | 6.2:+61104132 | MS.gene20392:CDS |
| CCAAAAGACATGGATTGTTT+CGG | 0.440180 | 6.2:+61104529 | MS.gene20392:CDS |
| TAACTCAGAAGGGGTTTCTC+TGG | 0.452736 | 6.2:+61105071 | MS.gene20392:CDS |
| GGAAGCGATGATTAGTTCTT+CGG | 0.461033 | 6.2:+61104279 | MS.gene20392:CDS |
| TTGGAAACAAATTCTTCTGT+AGG | 0.464329 | 6.2:+61104661 | MS.gene20392:CDS |
| TTCAATATATTTGATTGGAA+AGG | 0.488166 | 6.2:+61105144 | MS.gene20392:CDS |
| ATCGCAACCTGCAAAATTCG+TGG | 0.491700 | 6.2:+61104792 | MS.gene20392:CDS |
| GATAAGTATGCCGATGAAAA+GGG | 0.499232 | 6.2:+61105258 | MS.gene20392:CDS |
| GTATAGCGAAAGAGAATGGT+TGG | 0.511482 | 6.2:+61104476 | MS.gene20392:CDS |
| AATTTGTGAAATTGAGGAGG+TGG | 0.517271 | 6.2:+61104873 | MS.gene20392:CDS |
| CATGAAAAGGGTGTTAAAGA+AGG | 0.518046 | 6.2:+61104913 | MS.gene20392:CDS |
| ATTGTTACTGATCAATGATC+GGG | 0.521956 | 6.2:+61104996 | MS.gene20392:CDS |
| GATTGTTACTGATCAATGAT+CGG | 0.529538 | 6.2:+61104995 | MS.gene20392:CDS |
| GAATTCAGTCAACAAAATTG+AGG | 0.533657 | 6.2:+61104353 | MS.gene20392:CDS |
| TCAATTTCACAAATTTGAGA+TGG | 0.534494 | 6.2:-61104865 | None:intergenic |
| GTTGACTGAATTCTCAACCT+TGG | 0.534849 | 6.2:-61104343 | None:intergenic |
| CCGGTTCAAATCCATGAAAA+GGG | 0.536557 | 6.2:+61104901 | MS.gene20392:CDS |
| AAAACTTTGATATTGAATGT+AGG | 0.544123 | 6.2:+61104947 | MS.gene20392:CDS |
| ATTAGTATAGCGAAAGAGAA+TGG | 0.548295 | 6.2:+61104472 | MS.gene20392:CDS |
| ATGTAGGTGCTTAGATCAAG+TGG | 0.549169 | 6.2:+61104963 | MS.gene20392:CDS |
| CTTAAGCATCCTAACTCAGA+AGG | 0.556505 | 6.2:+61105060 | MS.gene20392:CDS |
| AATTGAGGAGGTGGAAAAGC+CGG | 0.561983 | 6.2:+61104882 | MS.gene20392:CDS |
| GAGGTACTTGATTAACTGGT+TGG | 0.564740 | 6.2:+61105020 | MS.gene20392:CDS |
| TTAAGCATCCTAACTCAGAA+GGG | 0.571526 | 6.2:+61105061 | MS.gene20392:CDS |
| CCTGTTACTCTTGAATGAAG+AGG | 0.573904 | 6.2:-61104427 | None:intergenic |
| AAGACTTTGCTTCTTCATGG+TGG | 0.585075 | 6.2:+61104070 | MS.gene20392:CDS |
| TCAAATTTGTGAAATTGAGG+AGG | 0.588535 | 6.2:+61104870 | MS.gene20392:CDS |
| TACTGATCAATGATCGGGCG+AGG | 0.592705 | 6.2:+61105001 | MS.gene20392:CDS |
| TGACCATGAAAGCGAAGCGG+TGG | 0.596891 | 6.2:+61104258 | MS.gene20392:CDS |
| AAAAGGCAACCAAATCCAGA+AGG | 0.598988 | 6.2:-61104613 | None:intergenic |
| CAACCTGCAAAATTCGTGGA+AGG | 0.606520 | 6.2:+61104796 | MS.gene20392:CDS |
| TAAGCATCCTAACTCAGAAG+GGG | 0.626495 | 6.2:+61105062 | MS.gene20392:CDS |
| TTTCACAGCTAATAGAACAT+CGG | 0.630885 | 6.2:+61104174 | MS.gene20392:CDS |
| TGCATTAGGACCAAAAGACA+TGG | 0.636735 | 6.2:+61104519 | MS.gene20392:CDS |
| AAAGGCAACCAAATCCAGAA+GGG | 0.648687 | 6.2:-61104612 | None:intergenic |
| TTCTGAGAGGAAGATCGTAG+AGG | 0.702313 | 6.2:+61104825 | MS.gene20392:CDS |
| TGGAAGGAGAATCTTCTGAG+AGG | 0.702786 | 6.2:+61104812 | MS.gene20392:CDS |
| TTATGACCATGAAAGCGAAG+CGG | 0.729811 | 6.2:+61104255 | MS.gene20392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTTGATATTGAATGT+AGG | + | chr6.2:61104947-61104966 | MS.gene20392:CDS | 20.0% |
| !! | AAGAAAGATAAAGAAAAAGT+TGG | + | chr6.2:61105303-61105322 | MS.gene20392:CDS | 20.0% |
| !! | AAGAGAAAGAAGAAAAATAA+GGG | + | chr6.2:61104391-61104410 | MS.gene20392:CDS | 20.0% |
| !! | TAAGAGAAAGAAGAAAAATA+AGG | + | chr6.2:61104390-61104409 | MS.gene20392:CDS | 20.0% |
| !! | TTCAATATATTTGATTGGAA+AGG | + | chr6.2:61105144-61105163 | MS.gene20392:CDS | 20.0% |
| !! | TTGAAGATATCTATAATCTT+TGG | + | chr6.2:61105367-61105386 | MS.gene20392:CDS | 20.0% |
| !! | TTGCATTCAATATATTTGAT+TGG | + | chr6.2:61105139-61105158 | MS.gene20392:CDS | 20.0% |
| !!! | TGTTCTTGTTATAAAGTTTT+TGG | + | chr6.2:61104583-61104602 | MS.gene20392:CDS | 20.0% |
| ! | AATATATTGAATGCAATTGC+AGG | - | chr6.2:61105135-61105154 | None:intergenic | 25.0% |
| ! | ATCTCAAATTTGTGAAATTG+AGG | + | chr6.2:61104867-61104886 | MS.gene20392:CDS | 25.0% |
| ! | CAAGAACATATAAGAAAATC+TGG | - | chr6.2:61104571-61104590 | None:intergenic | 25.0% |
| ! | CATGAATTACCTTAACATAT+CGG | + | chr6.2:61104132-61104151 | MS.gene20392:CDS | 25.0% |
| ! | CCAAAAGTTAAATTTGATAG+AGG | + | chr6.2:61105108-61105127 | MS.gene20392:CDS | 25.0% |
| ! | GCTATACTAATCCATATATA+AGG | - | chr6.2:61104463-61104482 | None:intergenic | 25.0% |
| ! | TCAATTTCACAAATTTGAGA+TGG | - | chr6.2:61104868-61104887 | None:intergenic | 25.0% |
| ! | TTCTTCTTCATCTAAATGTA+AGG | - | chr6.2:61104734-61104753 | None:intergenic | 25.0% |
| ! | TTGCAGGATATACTAAAAAA+CGG | - | chr6.2:61104037-61104056 | None:intergenic | 25.0% |
| !! | AGCAATATTTCTATTAGCTA+TGG | + | chr6.2:61105210-61105229 | MS.gene20392:CDS | 25.0% |
| !! | TAGCACTTTTCTTGATAAAA+AGG | - | chr6.2:61104633-61104652 | None:intergenic | 25.0% |
| !!! | CCTCTATCAAATTTAACTTT+TGG | - | chr6.2:61105111-61105130 | None:intergenic | 25.0% |
| ATTAGTATAGCGAAAGAGAA+TGG | + | chr6.2:61104472-61104491 | MS.gene20392:CDS | 30.0% | |
| ATTGTTACTGATCAATGATC+GGG | + | chr6.2:61104996-61105015 | MS.gene20392:CDS | 30.0% | |
| GAATTCAGTCAACAAAATTG+AGG | + | chr6.2:61104353-61104372 | MS.gene20392:CDS | 30.0% | |
| GACAAAGACGTCATATAAAA+TGG | - | chr6.2:61104757-61104776 | None:intergenic | 30.0% | |
| GAGCAAGATATCCTTATATA+TGG | + | chr6.2:61104449-61104468 | MS.gene20392:CDS | 30.0% | |
| GATTGTTACTGATCAATGAT+CGG | + | chr6.2:61104995-61105014 | MS.gene20392:CDS | 30.0% | |
| TCAAATTTGTGAAATTGAGG+AGG | + | chr6.2:61104870-61104889 | MS.gene20392:CDS | 30.0% | |
| TTGGAAACAAATTCTTCTGT+AGG | + | chr6.2:61104661-61104680 | MS.gene20392:CDS | 30.0% | |
| TTTAGTATATCCTGCAAAAC+AGG | + | chr6.2:61104040-61104059 | MS.gene20392:CDS | 30.0% | |
| TTTCACAGCTAATAGAACAT+CGG | + | chr6.2:61104174-61104193 | MS.gene20392:CDS | 30.0% | |
| ! | AATCGTTTTCCGATATGTTA+AGG | - | chr6.2:61104144-61104163 | None:intergenic | 30.0% |
| ! | ATGGATTGTTGCATCATATA+TGG | + | chr6.2:61105229-61105248 | MS.gene20392:CDS | 30.0% |
| ! | TTAGATCAAGTGGATTCATT+AGG | + | chr6.2:61104973-61104992 | MS.gene20392:CDS | 30.0% |
| AATTTGTGAAATTGAGGAGG+TGG | + | chr6.2:61104873-61104892 | MS.gene20392:CDS | 35.0% | |
| AGATAAGTATGCCGATGAAA+AGG | + | chr6.2:61105257-61105276 | MS.gene20392:CDS | 35.0% | |
| ATCGGAAAACGATTACTTCA+TGG | + | chr6.2:61104150-61104169 | MS.gene20392:CDS | 35.0% | |
| GAACCTCATGCAAGAAAAAA+AGG | + | chr6.2:61104690-61104709 | MS.gene20392:CDS | 35.0% | |
| GATAAGTATGCCGATGAAAA+GGG | + | chr6.2:61105258-61105277 | MS.gene20392:CDS | 35.0% | |
| GTTTCTCTGGTGAAGATTTA+TGG | + | chr6.2:61105084-61105103 | MS.gene20392:CDS | 35.0% | |
| TTAAGCATCCTAACTCAGAA+GGG | + | chr6.2:61105061-61105080 | MS.gene20392:CDS | 35.0% | |
| TTGAAGACTTTGCTTCTTCA+TGG | + | chr6.2:61104067-61104086 | MS.gene20392:CDS | 35.0% | |
| ! | AGAGAATGGTTGGAATGTTT+TGG | + | chr6.2:61104486-61104505 | MS.gene20392:CDS | 35.0% |
| ! | ATTAGTTCTTCGGAAAAACG+AGG | + | chr6.2:61104289-61104308 | MS.gene20392:CDS | 35.0% |
| ! | CCAAAAGACATGGATTGTTT+CGG | + | chr6.2:61104529-61104548 | MS.gene20392:CDS | 35.0% |
| ! | CTTCAAATTTCCTGTTTTGC+AGG | - | chr6.2:61104053-61104072 | None:intergenic | 35.0% |
| ! | CTTCTTTAACACCCTTTTCA+TGG | - | chr6.2:61104915-61104934 | None:intergenic | 35.0% |
| ! | TAGTACTCTTCCCTTTTCAT+CGG | - | chr6.2:61105271-61105290 | None:intergenic | 35.0% |
| !! | CATGAAAAGGGTGTTAAAGA+AGG | + | chr6.2:61104913-61104932 | MS.gene20392:CDS | 35.0% |
| !!! | TACTGCTGCATTAGGTTTTT+TGG | + | chr6.2:61105338-61105357 | MS.gene20392:CDS | 35.0% |
| AAAAGGCAACCAAATCCAGA+AGG | - | chr6.2:61104616-61104635 | None:intergenic | 40.0% | |
| AAAGGCAACCAAATCCAGAA+GGG | - | chr6.2:61104615-61104634 | None:intergenic | 40.0% | |
| AAGACTTTGCTTCTTCATGG+TGG | + | chr6.2:61104070-61104089 | MS.gene20392:CDS | 40.0% | |
| ACTGTTGTTACTGCTGCATT+AGG | + | chr6.2:61105330-61105349 | MS.gene20392:CDS | 40.0% | |
| ATGTAGGTGCTTAGATCAAG+TGG | + | chr6.2:61104963-61104982 | MS.gene20392:CDS | 40.0% | |
| CCGGTTCAAATCCATGAAAA+GGG | + | chr6.2:61104901-61104920 | MS.gene20392:CDS | 40.0% | |
| CCTCTTCATTCAAGAGTAAC+AGG | + | chr6.2:61104427-61104446 | MS.gene20392:CDS | 40.0% | |
| CCTGTTACTCTTGAATGAAG+AGG | - | chr6.2:61104430-61104449 | None:intergenic | 40.0% | |
| CTTAAGCATCCTAACTCAGA+AGG | + | chr6.2:61105060-61105079 | MS.gene20392:CDS | 40.0% | |
| GTATAGCGAAAGAGAATGGT+TGG | + | chr6.2:61104476-61104495 | MS.gene20392:CDS | 40.0% | |
| GTTGACTGAATTCTCAACCT+TGG | - | chr6.2:61104346-61104365 | None:intergenic | 40.0% | |
| TAAGCATCCTAACTCAGAAG+GGG | + | chr6.2:61105062-61105081 | MS.gene20392:CDS | 40.0% | |
| TGCATTAGGACCAAAAGACA+TGG | + | chr6.2:61104519-61104538 | MS.gene20392:CDS | 40.0% | |
| TTATGACCATGAAAGCGAAG+CGG | + | chr6.2:61104255-61104274 | MS.gene20392:CDS | 40.0% | |
| ! | CCCTTTTCATGGATTTGAAC+CGG | - | chr6.2:61104904-61104923 | None:intergenic | 40.0% |
| ! | CCGAAACAATCCATGTCTTT+TGG | - | chr6.2:61104532-61104551 | None:intergenic | 40.0% |
| ! | CTATGTCAGCAGAGTTTTCA+TGG | + | chr6.2:61104320-61104339 | MS.gene20392:CDS | 40.0% |
| ! | GAGGTACTTGATTAACTGGT+TGG | + | chr6.2:61105020-61105039 | MS.gene20392:CDS | 40.0% |
| ! | GGAAGCGATGATTAGTTCTT+CGG | + | chr6.2:61104279-61104298 | MS.gene20392:CDS | 40.0% |
| ! | TTGGTTGATGCATGTGCATT+AGG | + | chr6.2:61104505-61104524 | MS.gene20392:CDS | 40.0% |
| !! | GTTTTTGGAGAAAACCCTTC+TGG | + | chr6.2:61104598-61104617 | MS.gene20392:CDS | 40.0% |
| !! | TCTCATTGCTGACTCGAATT+CGG | - | chr6.2:61104104-61104123 | None:intergenic | 40.0% |
| !!! | ATCTTTGGTGTTTTGTTGCG+AGG | + | chr6.2:61105382-61105401 | MS.gene20392:CDS | 40.0% |
| !!! | GAAAAGTGCTACGTCGATTT+TGG | + | chr6.2:61104642-61104661 | MS.gene20392:CDS | 40.0% |
| !!! | TGAGATGGTTTTGACACACT+TGG | - | chr6.2:61104853-61104872 | None:intergenic | 40.0% |
| !!! | TGATGCTGATTTTGTCGAGA+AGG | + | chr6.2:61105410-61105429 | MS.gene20392:CDS | 40.0% |
| AATTGAGGAGGTGGAAAAGC+CGG | + | chr6.2:61104882-61104901 | MS.gene20392:CDS | 45.0% | |
| AGAGAAACCCCTTCTGAGTT+AGG | - | chr6.2:61105072-61105091 | None:intergenic | 45.0% | |
| ATCGCAACCTGCAAAATTCG+TGG | + | chr6.2:61104792-61104811 | MS.gene20392:CDS | 45.0% | |
| CAACCTGCAAAATTCGTGGA+AGG | + | chr6.2:61104796-61104815 | MS.gene20392:CDS | 45.0% | |
| GGAGAAAACCCTTCTGGATT+TGG | + | chr6.2:61104604-61104623 | MS.gene20392:CDS | 45.0% | |
| TAACTCAGAAGGGGTTTCTC+TGG | + | chr6.2:61105071-61105090 | MS.gene20392:CDS | 45.0% | |
| TGGAAGGAGAATCTTCTGAG+AGG | + | chr6.2:61104812-61104831 | MS.gene20392:CDS | 45.0% | |
| ! | ATTTTGTCGAGAAGGAGAGG+TGG | + | chr6.2:61105418-61105437 | MS.gene20392:CDS | 45.0% |
| ! | CTGATTTTGTCGAGAAGGAG+AGG | + | chr6.2:61105415-61105434 | MS.gene20392:CDS | 45.0% |
| ! | GCCGGTTCAAATCCATGAAA+AGG | + | chr6.2:61104900-61104919 | MS.gene20392:CDS | 45.0% |
| ! | TCTCCTTCCACGAATTTTGC+AGG | - | chr6.2:61104802-61104821 | None:intergenic | 45.0% |
| ! | TTCTGAGAGGAAGATCGTAG+AGG | + | chr6.2:61104825-61104844 | MS.gene20392:CDS | 45.0% |
| !!! | GCGCCTTTTTTTCTTGCATG+AGG | - | chr6.2:61104696-61104715 | None:intergenic | 45.0% |
| TACTGATCAATGATCGGGCG+AGG | + | chr6.2:61105001-61105020 | MS.gene20392:CDS | 50.0% | |
| ! | CAGCAGAGTTTTCATGGCCA+AGG | + | chr6.2:61104326-61104345 | MS.gene20392:CDS | 50.0% |
| ! | GCGAGTTTTTGCACGAGAAC+AGG | - | chr6.2:61105183-61105202 | None:intergenic | 50.0% |
| ! | GGGCGAGGTACTTGATTAAC+TGG | + | chr6.2:61105016-61105035 | MS.gene20392:CDS | 50.0% |
| CTTCCACCGCTTCGCTTTCA+TGG | - | chr6.2:61104264-61104283 | None:intergenic | 55.0% | |
| TGACCATGAAAGCGAAGCGG+TGG | + | chr6.2:61104258-61104277 | MS.gene20392:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 61104031 | 61105479 | 61104031 | ID=MS.gene20392 |
| chr6.2 | mRNA | 61104031 | 61105479 | 61104031 | ID=MS.gene20392.t1;Parent=MS.gene20392 |
| chr6.2 | exon | 61104031 | 61105479 | 61104031 | ID=MS.gene20392.t1.exon1;Parent=MS.gene20392.t1 |
| chr6.2 | CDS | 61104031 | 61105479 | 61104031 | ID=cds.MS.gene20392.t1;Parent=MS.gene20392.t1 |
| Gene Sequence |
| Protein sequence |
