AlfalfaGEDB | MS.gene82958

M. sativa cultivar XinJiangDaYe / MS.gene82958

KEGG: -
GO: -
PFAM: PF00534.23 PF13439.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82958.t1	XP_003628986.2	96.9	482	15	0	2	483	11	492	1.90E-274	954.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82958.t1	P26470	26.0	204	125	7	257	444	150	343	9.1e-12	73.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82958.t1	G7L745	96.9	482	15	0	2	483	1	482	1.3e-274	954.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene82958	-0.861114	1.29E-63	-1.69E-46
MS.gene049181	MS.gene82958	0.809513	1.82E-50	-1.69E-46
MS.gene049217	MS.gene82958	-0.85682	2.48E-62	-1.69E-46
MS.gene049222	MS.gene82958	-0.859384	4.29E-63	-1.69E-46
MS.gene049232	MS.gene82958	-0.804202	2.42E-49	-1.69E-46
MS.gene049281	MS.gene82958	0.858779	6.52E-63	-1.69E-46
MS.gene049285	MS.gene82958	-0.866442	2.84E-65	-1.69E-46
MS.gene049312	MS.gene82958	0.809667	1.69E-50	-1.69E-46
MS.gene049320	MS.gene82958	-0.870622	1.27E-66	-1.69E-46
MS.gene049483	MS.gene82958	0.834167	3.51E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82958.t1	MTR_8g071900	96.888	482	15	0	2	483	1	482	0.0	980
MS.gene82958.t1	MTR_5g026360	75.153	491	108	5	2	483	1	486	0.0	749
MS.gene82958.t1	MTR_8g068840	46.327	490	229	13	15	482	7	484	3.17e-136	402

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82958.t1	AT4G19460	64.444	495	161	6	2	483	24	516	0.0	648
MS.gene82958.t1	AT1G73160	49.433	441	205	8	50	483	52	481	1.08e-153	446
MS.gene82958.t1	AT5G59070	47.589	477	198	12	43	480	38	501	6.93e-138	407

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Find 110 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTACCTTTAATGCT+TGG	0.433398	8.1:+33511377	None:intergenic
AAAGTAAGATCAAGCCCTTG+AGG	0.685959	8.1:+33511446	None:intergenic
AAGATCACCTGACCAAGTTT+TGG	0.306569	8.1:+33512429	None:intergenic
AAGCATTAAAGGTACTCTTT+TGG	0.369662	8.1:-33511375	MS.gene82958:CDS
AATCCAACACTTAGGCCTCA+AGG	0.556259	8.1:-33511461	MS.gene82958:CDS
AATCTTGTAGTATCTTGGCA+TGG	0.608621	8.1:-33512025	MS.gene82958:CDS
AATGTTTATTTGATTGTTGC+TGG	0.320566	8.1:-33511596	MS.gene82958:CDS
ACATTGAGGCAGCATACTCA+CGG	0.632335	8.1:+33511240	None:intergenic
ACTTCAATCAAAACTCAACA+AGG	0.658763	8.1:-33512202	MS.gene82958:CDS
AGAGTGCATGTGATTGTTAA+TGG	0.352628	8.1:-33511791	MS.gene82958:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCAATCAAAACTCAACA+AGG	-	chr8.1:33511547-33511566	MS.gene82958:CDS	30.0%
CCTTCATGAAAATGGATAAA+AGG	+	chr8.1:33511577-33511596	None:intergenic	30.0%
CTTATCTCATTCAAAACCTT+AGG	+	chr8.1:33511853-33511872	None:intergenic	30.0%
TAAAAATTTGAAGGGGAGTT+TGG	+	chr8.1:33511193-33511212	None:intergenic	30.0%
TAAAATGCTTTCAACATGGA+AGG	+	chr8.1:33512246-33512265	None:intergenic	30.0%
TTACTTTAGCTGAATTTGCA+TGG	-	chr8.1:33511341-33511360	MS.gene82958:CDS	30.0%
TTTATTGTATCTCCACTTGT+CGG	+	chr8.1:33511605-33511624	None:intergenic	30.0%
AATCTTGTAGTATCTTGGCA+TGG	-	chr8.1:33511724-33511743	MS.gene82958:CDS	35.0%
AGAGTGCATGTGATTGTTAA+TGG	-	chr8.1:33511958-33511977	MS.gene82958:CDS	35.0%
AGATTCCTAGCTACATAATG+AGG	+	chr8.1:33511700-33511719	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	33511160	33512611	33511160	ID=MS.gene82958
chr8.1	mRNA	33511160	33512611	33511160	ID=MS.gene82958.t1;Parent=MS.gene82958
chr8.1	exon	33511160	33512611	33511160	ID=MS.gene82958.t1.exon1;Parent=MS.gene82958.t1
chr8.1	CDS	33511160	33512611	33511160	ID=cds.MS.gene82958.t1;Parent=MS.gene82958.t1

Gene Sequence

>MS.gene82958

ATGATGGCCTTAAACAACAAATCCAAGAAACCAAACTCCCCTTCAAATTTTTATTTCTTCACAACCCTTTTATTCATTGTTCTCTTCACAATACCAGCTCTTTTTCTTCTCCACACCCCCACCACAACTTCTATTTGCACCACCTTTGCTTCCCAACAATCCAAAACTTGGTCAGGTGATCTTACTTTAGCTGAATTTGCATGGAACAAGCTCTCATTTTCTCAACGCAAAAAACCACTTTCACCTCTCAAAATTGCTGTTTTCTCTAGAAAATGGCCTATTGGTACCACCCCAGGTGGCATGGAACGCCATGCTTACACCCTCCACACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCACAAGATGAAAAAACTTCAATCAAAACTCAACAAGGTTATCCTTTTATCCATTTTCATGAAGGTGAATCCGACAAGTGGAGATACAATAAAGCATTGGAACAATATCAGGAAGAGAACAAGAAAGAACCATTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTTCAAATCTTGTAGTATCTTGGCATGGAATAGCACTTGAGAGTTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGACCTGATGAACCTATTTCACCTGGTTTCAACAATAGCTTACAAGGTGTTATTCCTAAGGTTTTGAATGAGATAAGATTCTTTAAGAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGTGATATGCTAAGAGATTTCTATCAAATTCCTACAAGAAGAGTGCATGTGATTGTTAATGGGGTTGATGAGGATGAGTTTGGAGAAGATGCTGATTTAGGAAGGAAATTTAGAACCAAAATTGGGATTCCAAGGAATGCAAGTTTGGTACTTGGTGTAGCAGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTCATGAAGCATATTCAAGGCTAATAACAAAACACCCTAATGTTTATTTGATTGTTGCTGGTTCTGGACCATGGGGGAACAGGTACAAGGATTTAGGAAACCAAGTTCTTGTTCTAGGATCAATGAGTCCTTCCATGTTGAAAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTTTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTACATGTTCTCTCCTAATGTAGAGTCCCTATTGGAGGCACTTGAAGCAGTGGTAAAAGATGGACCACAGAGGCTAGCAAGGAGAGGAAAGGCTTGCCGTGAGTATGCTGCCTCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA

Protein sequence

>MS.gene82958.t1

MMALNNKSKKPNSPSNFYFFTTLLFIVLFTIPALFLLHTPTTTSICTTFASQQSKTWSGDLTLAEFAWNKLSFSQRKKPLSPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKTQQGYPFIHFHEGESDKWRYNKALEQYQEENKKEPFDVIHSESVALPHYVARNLSNLVVSWHGIALESLQSSIFQDLARRPDEPISPGFNNSLQGVIPKVLNEIRFFKSYAHHVAISDSCGDMLRDFYQIPTRRVHVIVNGVDEDEFGEDADLGRKFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAYSRLITKHPNVYLIVAGSGPWGNRYKDLGNQVLVLGSMSPSMLKAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGYMFSPNVESLLEALEAVVKDGPQRLARRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP