AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44913


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44913.t1 MTR_4g095410 99.324 296 2 0 1 296 121 416 0.0 619
MS.gene44913.t1 MTR_5g016070 78.041 296 62 2 1 295 131 424 6.66e-176 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44913.t1 AT4G37510 77.441 297 63 4 1 295 137 431 4.56e-171 484

Find 0 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACAAACTAATTATAAG+AGG - 32661:13005-13024 None:intergenic 15.0%
!! GTTAGTTAATAAACATAATA+AGG - 32661:14495-14514 None:intergenic 15.0%
!! TTTATGTTGGAAAATAAAAA+GGG + 32661:13223-13242 MS.gene44913:intron 15.0%
!!! CATATAGTTATGTTTTTTTA+TGG + 32661:13600-13619 MS.gene44913:intron 15.0%
!!! TTTGTGTTTTTAAATTATTG+TGG + 32661:13681-13700 MS.gene44913:intron 15.0%
!!! TTTTATGTTGGAAAATAAAA+AGG + 32661:13222-13241 MS.gene44913:intron 15.0%
!! AATGATTAAATATGGATCTA+GGG + 32661:14282-14301 MS.gene44913:intron 20.0%
!! AATTCAGTATGTGAATAATA+TGG + 32661:15403-15422 MS.gene44913:intron 20.0%
!! CATAAACAAATTATGTTGTA+GGG - 32661:15010-15029 None:intergenic 20.0%
!! CGAATTGTAATGATTAAATA+TGG + 32661:14274-14293 MS.gene44913:intron 20.0%
!! GATAGGATTAAGAATAAATA+AGG - 32661:16005-16024 None:intergenic 20.0%
!! TAATGATTAAATATGGATCT+AGG + 32661:14281-14300 MS.gene44913:intron 20.0%
!! TACTAACATGCTTAATATTT+GGG - 32661:15675-15694 None:intergenic 20.0%
!! TAGGAATTCTATTGTAATTT+GGG - 32661:14393-14412 None:intergenic 20.0%
!! TCATAAACAAATTATGTTGT+AGG - 32661:15011-15030 None:intergenic 20.0%
!! TGATCAAATTTGTAATTTGA+TGG - 32661:16288-16307 None:intergenic 20.0%
!! TTAAAAACACAAAGCAATAA+TGG - 32661:13674-13693 None:intergenic 20.0%
!!! AATCAAACAGCTTTAAATAA+AGG + 32661:13373-13392 MS.gene44913:intron 20.0%
!!! AGAGAGAATATATTTTATGT+TGG + 32661:13210-13229 MS.gene44913:intron 20.0%
!!! ATCATTTTTGTACCTATTTT+AGG + 32661:15578-15597 MS.gene44913:intron 20.0%
!!! ATGATAGATATTTTATGATG+TGG + 32661:15553-15572 MS.gene44913:intron 20.0%
!!! GATATTTACTAACTTTTTGT+AGG - 32661:14885-14904 None:intergenic 20.0%
! AACCTAACAGATATGAAAAA+AGG - 32661:15304-15323 None:intergenic 25.0%
! AACTTATCCATATCAACATT+AGG - 32661:12903-12922 None:intergenic 25.0%
! AATAAACATAATAAGGCATG+TGG - 32661:14488-14507 None:intergenic 25.0%
! AATCTGATATCACAAATTCA+GGG - 32661:14194-14213 None:intergenic 25.0%
! ACATTTCAGATAGATATCAT+GGG - 32661:14570-14589 None:intergenic 25.0%
! AGAAGAGAAATACCTAAAAT+AGG - 32661:15593-15612 None:intergenic 25.0%
! AGGAATTCTATTGTAATTTG+GGG - 32661:14392-14411 None:intergenic 25.0%
! CTACTAACATGCTTAATATT+TGG - 32661:15676-15695 None:intergenic 25.0%
! CTAGGAATTCTATTGTAATT+TGG - 32661:14394-14413 None:intergenic 25.0%
! CTATTTAAAAGTTAAAACCC+TGG + 32661:13545-13564 MS.gene44913:intron 25.0%
! GAATTGATTGATATGATCAT+AGG + 32661:13942-13961 MS.gene44913:intron 25.0%
! TAAGAATAAATAAGGTAGAG+AGG - 32661:15997-16016 None:intergenic 25.0%
! TAATGTTGATATGGATAAGT+TGG + 32661:12902-12921 MS.gene44913:CDS 25.0%
! TACATGGATATTAGAGAAAA+AGG - 32661:16162-16181 None:intergenic 25.0%
! TACATTTCAGATAGATATCA+TGG - 32661:14571-14590 None:intergenic 25.0%
! TCACAAACTATCTTAATCAA+TGG + 32661:14535-14554 MS.gene44913:intron 25.0%
! TCGTATTACTAGAGAAAATA+GGG + 32661:14361-14380 MS.gene44913:intron 25.0%
! TTCAAGCATATCGTAAATAA+TGG - 32661:13764-13783 None:intergenic 25.0%
! TTTATTTGCTTGTAAGTTTC+TGG + 32661:13981-14000 MS.gene44913:intron 25.0%
! TTTGTAATTGTATGTGCATT+TGG + 32661:14613-14632 MS.gene44913:intron 25.0%
!! ATTCTATCTGTCATTTCTAA+TGG - 32661:15203-15222 None:intergenic 25.0%
!! CTAGCATTTTTAATCCATTT+AGG - 32661:12861-12880 None:intergenic 25.0%
!! TGAAATCTACAACCTTTTAA+GGG + 32661:15803-15822 MS.gene44913:intron 25.0%
!! TGATTAAGATAGTTTGTGAT+AGG - 32661:14534-14553 None:intergenic 25.0%
!! TTGAAATCTACAACCTTTTA+AGG + 32661:15802-15821 MS.gene44913:intron 25.0%
!! TTTTCATATCTGTTAGGTTT+GGG + 32661:15305-15324 MS.gene44913:intron 25.0%
!! TTTTTCATATCTGTTAGGTT+TGG + 32661:15304-15323 MS.gene44913:intron 25.0%
!!! GGGTTTTAACTTTTAAATAG+AGG - 32661:13545-13564 None:intergenic 25.0%
!!! TACCTTTTTTCATATCTGTT+AGG + 32661:15299-15318 MS.gene44913:intron 25.0%
!!! TCTTTTTGAAGTTTTTGGAA+TGG + 32661:14705-14724 MS.gene44913:CDS 25.0%
!!! TGGAAAATAAAAAGGGTATT+TGG + 32661:13230-13249 MS.gene44913:intron 25.0%
!!! TTAAAAGCCTTTTTTTCACT+TGG + 32661:15711-15730 MS.gene44913:intron 25.0%
!!! TTAATATTTGGGTGGTTTTA+AGG - 32661:15664-15683 None:intergenic 25.0%
!!! TTGCTATTTTCTTTTCGTAT+GGG + 32661:13863-13882 MS.gene44913:intron 25.0%
!!! TTTGCTATTTTCTTTTCGTA+TGG + 32661:13862-13881 MS.gene44913:intron 25.0%
AAAAGGTAAAGAAGAATGAG+AGG - 32661:15287-15306 None:intergenic 30.0%
AGATAGAACCAAACAATACT+AGG + 32661:13106-13125 MS.gene44913:intron 30.0%
AGGTATTTCTCTTCTGTATT+TGG + 32661:15598-15617 MS.gene44913:intron 30.0%
ATATACATCCTTATTCATCG+GGG + 32661:14111-14130 MS.gene44913:intron 30.0%
ATCTTCTATTGAAGGTTACA+TGG - 32661:16178-16197 None:intergenic 30.0%
ATGTAACCTTCAATAGAAGA+TGG + 32661:16177-16196 MS.gene44913:intron 30.0%
ATTTGATACGCTGTTGTATT+TGG + 32661:12650-12669 MS.gene44913:CDS 30.0%
CAAATAATTGGAGTCAAATG+TGG + 32661:13447-13466 MS.gene44913:intron 30.0%
CAATCTGATATCACAAATTC+AGG - 32661:14195-14214 None:intergenic 30.0%
CACATACTGAATTCCAAAAT+GGG - 32661:15396-15415 None:intergenic 30.0%
CACATATGTCATAGCATTAT+TGG + 32661:14851-14870 MS.gene44913:intron 30.0%
CCAATTATTTGCAACATCAA+AGG - 32661:13438-13457 None:intergenic 30.0%
CCTTTGATGTTGCAAATAAT+TGG + 32661:13435-13454 MS.gene44913:intron 30.0%
CTCGTATTACTAGAGAAAAT+AGG + 32661:14360-14379 MS.gene44913:intron 30.0%
GACATACAAAAACTCTAGTA+GGG - 32661:15911-15930 None:intergenic 30.0%
GATATACATCCTTATTCATC+GGG + 32661:14110-14129 MS.gene44913:intron 30.0%
GGATATACATCCTTATTCAT+CGG + 32661:14109-14128 MS.gene44913:intron 30.0%
GTTCGACAGTAAATTGATTA+AGG - 32661:14327-14346 None:intergenic 30.0%
TAACAGTTCACTAACTTACT+TGG - 32661:12952-12971 None:intergenic 30.0%
TAACATGCTTAATATTTGGG+TGG - 32661:15672-15691 None:intergenic 30.0%
TAGAAGTGAAACAAGCATTA+GGG + 32661:12571-12590 MS.gene44913:CDS 30.0%
TATTCTCTCTGTATTGTAAC+AGG - 32661:13200-13219 None:intergenic 30.0%
TCACATACTGAATTCCAAAA+TGG - 32661:15397-15416 None:intergenic 30.0%
TGTTCAACAATGTAAACACA+CGG - 32661:13571-13590 None:intergenic 30.0%
TTAGAAGTGAAACAAGCATT+AGG + 32661:12570-12589 MS.gene44913:CDS 30.0%
TTGTGATAGGAATGTTAAGT+TGG - 32661:14521-14540 None:intergenic 30.0%
! AAGCTGTTTGATTTAGAAGT+TGG - 32661:13366-13385 None:intergenic 30.0%
! AATATCTATCATTGACTGTG+TGG - 32661:15545-15564 None:intergenic 30.0%
! AGATGCATTGAAGTATTCAT+AGG - 32661:15340-15359 None:intergenic 30.0%
! ATTAAAAATGCTAGCTTGCA+TGG + 32661:12867-12886 MS.gene44913:CDS 30.0%
! GAAATCTACAACCTTTTAAG+GGG + 32661:15804-15823 MS.gene44913:intron 30.0%
! GAATTTGTCCACCTATTTTA+GGG + 32661:13822-13841 MS.gene44913:intron 30.0%
! GGTTTTTCCTAATGTTGATA+TGG + 32661:12893-12912 MS.gene44913:CDS 30.0%
! TAACAAAAATCATGATGACG+TGG + 32661:13500-13519 MS.gene44913:intron 30.0%
! TGAATTTGTCCACCTATTTT+AGG + 32661:13821-13840 MS.gene44913:intron 30.0%
! TTTTCTCTAGTAATACGAGT+TGG - 32661:14359-14378 None:intergenic 30.0%
!! AATTTGTCCACCTATTTTAG+GGG + 32661:13823-13842 MS.gene44913:intron 30.0%
!! ATAAGTTGGTTAGGAAAGAA+AGG + 32661:12916-12935 MS.gene44913:CDS 30.0%
!! CAGTTTAGTTATTGATTCTG+TGG + 32661:15468-15487 MS.gene44913:intron 30.0%
!! GCTTGACTAACTTTGAAATT+TGG + 32661:14088-14107 MS.gene44913:intron 30.0%
!! TAAGTTGGTTAGGAAAGAAA+GGG + 32661:12917-12936 MS.gene44913:CDS 30.0%
!! TGATTTTGACATGTCATGTT+TGG + 32661:13629-13648 MS.gene44913:intron 30.0%
!! TTATTGATTCTGTGGAAACT+TGG + 32661:15476-15495 MS.gene44913:intron 30.0%
!! TTGATATGGATAAGTTGGTT+AGG + 32661:12907-12926 MS.gene44913:CDS 30.0%
!!! ATTCGAGGTTGTTTTTTTTG+GGG + 32661:12724-12743 MS.gene44913:CDS 30.0%
!!! CATTCGAGGTTGTTTTTTTT+GGG + 32661:12723-12742 MS.gene44913:CDS 30.0%
!!! CGTGTTCTTTTTGAAGTTTT+TGG + 32661:14700-14719 MS.gene44913:CDS 30.0%
!!! TGCTATTTTCTTTTCGTATG+GGG + 32661:13864-13883 MS.gene44913:intron 30.0%
!!! TTTATTTTGTTTGACTCCCT+TGG - 32661:13788-13807 None:intergenic 30.0%
AAAAGAACACGATACACTTC+CGG - 32661:14691-14710 None:intergenic 35.0%
AAGATTAAGTTTGACCACGA+TGG - 32661:14925-14944 None:intergenic 35.0%
AATCCCACCAAGTGAAAAAA+AGG - 32661:15721-15740 None:intergenic 35.0%
ACAAAGCAATAATGGCCATA+TGG - 32661:13666-13685 None:intergenic 35.0%
ACTTGCTCTTCAAAACAAGA+TGG - 32661:14242-14261 None:intergenic 35.0%
AGGAGTGATCATCTTATCAT+TGG - 32661:14442-14461 None:intergenic 35.0%
AGTCCAACAGTAAACAATAG+TGG - 32661:15856-15875 None:intergenic 35.0%
ATAAATAGGGAAGAGAGATC+AGG - 32661:14462-14481 None:intergenic 35.0%
ATAATGGCCATATGGATGAA+AGG - 32661:13658-13677 None:intergenic 35.0%
ATACAAAAACTCTAGTAGGG+AGG - 32661:15908-15927 None:intergenic 35.0%
ATCTGATCGAAAGTTACTCT+AGG + 32661:16207-16226 MS.gene44913:intron 35.0%
ATGAACTTCGCATGCATATT+TGG - 32661:14986-15005 None:intergenic 35.0%
CATGTATCTGCTGAATTTGA+AGG + 32661:14784-14803 MS.gene44913:CDS 35.0%
CATTGCTCAAAAGATTACCA+AGG - 32661:14015-14034 None:intergenic 35.0%
CGACATACAAAAACTCTAGT+AGG - 32661:15912-15931 None:intergenic 35.0%
CTATTGTTTACTGTTGGACT+TGG + 32661:15856-15875 MS.gene44913:intron 35.0%
CTTCCACTATTGTTTACTGT+TGG + 32661:15850-15869 MS.gene44913:intron 35.0%
CTTGCTCTTCAAAACAAGAT+GGG - 32661:14241-14260 None:intergenic 35.0%
GATCTCTCTTCCCTATTTAT+AGG + 32661:14462-14481 MS.gene44913:intron 35.0%
GGAGTGATCATCTTATCATT+GGG - 32661:14441-14460 None:intergenic 35.0%
GGTTTATACAAGCATGTCAA+TGG + 32661:16109-16128 MS.gene44913:intron 35.0%
GTTATGAGACTCGACATAAT+AGG - 32661:13344-13363 None:intergenic 35.0%
TAATTGTATGTGCATTTGGC+AGG + 32661:14617-14636 MS.gene44913:intron 35.0%
TACAAAAACTCTAGTAGGGA+GGG - 32661:15907-15926 None:intergenic 35.0%
TACGAGAGATTAGAATACCT+TGG + 32661:16321-16340 MS.gene44913:CDS 35.0%
TACGATATGCTTGAATCCAA+GGG + 32661:13769-13788 MS.gene44913:intron 35.0%
TAGAGTCTTTCGAATACTCT+AGG - 32661:14412-14431 None:intergenic 35.0%
TCACCAAGCATTTCATCAAA+GGG - 32661:12609-12628 None:intergenic 35.0%
TCGGTTTAGAGGAAATGTAT+GGG + 32661:15136-15155 MS.gene44913:CDS 35.0%
TTACGATATGCTTGAATCCA+AGG + 32661:13768-13787 MS.gene44913:intron 35.0%
TTCACCAAGCATTTCATCAA+AGG - 32661:12610-12629 None:intergenic 35.0%
TTCCAGAAATTACTGAAGCT+AGG + 32661:15222-15241 MS.gene44913:CDS 35.0%
TTCCTAGCTTCAGTAATTTC+TGG - 32661:15227-15246 None:intergenic 35.0%
TTGGTATCCTTTCATCCATA+TGG + 32661:13648-13667 MS.gene44913:intron 35.0%
TTGTATAAACCTGAACGTCA+AGG - 32661:16100-16119 None:intergenic 35.0%
! ATAGTGGAGGATAAGACATA+TGG - 32661:14166-14185 None:intergenic 35.0%
! ATCGGTTTAGAGGAAATGTA+TGG + 32661:15135-15154 MS.gene44913:CDS 35.0%
! GTAAACAATAGTGGAAGACA+TGG - 32661:15847-15866 None:intergenic 35.0%
! TATTTTCTTTTCGTATGGGG+AGG + 32661:13867-13886 MS.gene44913:intron 35.0%
! TCATTTCTAATGGATAGCCA+AGG - 32661:15193-15212 None:intergenic 35.0%
! TTTCTACTGCTTTCCCATTT+TGG + 32661:15380-15399 MS.gene44913:intron 35.0%
!! ATTTGTCCACCTATTTTAGG+GGG + 32661:13824-13843 MS.gene44913:intron 35.0%
!! CAGCTTTAAATAAAGGTTCG+TGG + 32661:13380-13399 MS.gene44913:intron 35.0%
!! CTTGGTAATCTTTTGAGCAA+TGG + 32661:14013-14032 MS.gene44913:intron 35.0%
!! GCAACTTTTTGTTTGGTCTA+TGG - 32661:13269-13288 None:intergenic 35.0%
!! GGTATCAATGGATTAATGGA+GGG - 32661:15886-15905 None:intergenic 35.0%
!! TGTTTGGTTCTATCTAGTAC+TGG - 32661:13101-13120 None:intergenic 35.0%
!!! AAAGCCTTTTTTTCACTTGG+TGG + 32661:15714-15733 MS.gene44913:intron 35.0%
!!! AAGCCTTTTTTTCACTTGGT+GGG + 32661:15715-15734 MS.gene44913:intron 35.0%
!!! GCATTCGAGGTTGTTTTTTT+TGG + 32661:12722-12741 MS.gene44913:CDS 35.0%
AACAATACTAGGCATGGCAA+TGG + 32661:13117-13136 MS.gene44913:intron 40.0%
AAGGCATGTGGCCTATAAAT+AGG - 32661:14476-14495 None:intergenic 40.0%
AAGTCTATGAGAGTAGGGTA+TGG - 32661:13176-13195 None:intergenic 40.0%
AATCTCTCGTAGCAAAATCG+AGG - 32661:16312-16331 None:intergenic 40.0%
AATTTGAAGGCAAGCTAAGC+TGG + 32661:14797-14816 MS.gene44913:CDS 40.0%
ACAACAAACCCCCCTAAAAT+AGG - 32661:13836-13855 None:intergenic 40.0%
ACAATACTAGGCATGGCAAT+GGG + 32661:13118-13137 MS.gene44913:intron 40.0%
ACAGGTAAGTCTATGAGAGT+AGG - 32661:13182-13201 None:intergenic 40.0%
ACCAAACAAAAAGTTGCCTC+AGG + 32661:13272-13291 MS.gene44913:intron 40.0%
ACTCGACATAATAGGTAGCA+AGG - 32661:13336-13355 None:intergenic 40.0%
AGCCAAGGATTTGCATAACT+CGG - 32661:15178-15197 None:intergenic 40.0%
AGCGTATCAAATTGCTTAGC+AGG - 32661:12642-12661 None:intergenic 40.0%
AGGCATGTGGCCTATAAATA+GGG - 32661:14475-14494 None:intergenic 40.0%
AGTCTATGAGAGTAGGGTAT+GGG - 32661:13175-13194 None:intergenic 40.0%
ATAAGGTAGAGAGGAAGTCA+AGG - 32661:15988-16007 None:intergenic 40.0%
ATATAAAGCTCATGCCATCG+TGG + 32661:14908-14927 MS.gene44913:intron 40.0%
ATGGGAAAGCAGTAGAAACA+TGG - 32661:15378-15397 None:intergenic 40.0%
ATGTGATTGAGCTTGCGTTA+GGG + 32661:12751-12770 MS.gene44913:CDS 40.0%
ATGTGTAGCACTTGCCTTAT+AGG - 32661:14836-14855 None:intergenic 40.0%
ATTTCATCAAAGGGTTGGAG+AGG - 32661:12600-12619 None:intergenic 40.0%
CAAATTCAGGGCACATATAG+TGG - 32661:14182-14201 None:intergenic 40.0%
CAACCCTTTGATGAAATGCT+TGG + 32661:12603-12622 MS.gene44913:CDS 40.0%
CAAGCATTTCATCAAAGGGT+TGG - 32661:12605-12624 None:intergenic 40.0%
CAGGTAAGTCTATGAGAGTA+GGG - 32661:13181-13200 None:intergenic 40.0%
CCAAACAAAAAGTTGCCTCA+GGG + 32661:13273-13292 MS.gene44913:intron 40.0%
GAACCAAACAATACTAGGCA+TGG + 32661:13111-13130 MS.gene44913:intron 40.0%
GCAAGATATGGTTGCCTATA+AGG + 32661:14819-14838 MS.gene44913:CDS 40.0%
GCGTATCAAATTGCTTAGCA+GGG - 32661:12641-12660 None:intergenic 40.0%
GGAAGACATGGAAAAGCTAT+GGG - 32661:15835-15854 None:intergenic 40.0%
TATGGGTCAAACCCCTTAAA+AGG - 32661:15818-15837 None:intergenic 40.0%
TATGTGATTGAGCTTGCGTT+AGG + 32661:12750-12769 MS.gene44913:CDS 40.0%
TGCTGACCATCTTCTATTGA+AGG - 32661:16186-16205 None:intergenic 40.0%
TGGAAGACATGGAAAAGCTA+TGG - 32661:15836-15855 None:intergenic 40.0%
TTGCCATGCCTAGTATTGTT+TGG - 32661:13117-13136 None:intergenic 40.0%
TTTCATCAAAGGGTTGGAGA+GGG - 32661:12599-12618 None:intergenic 40.0%
! AAATGCTAGCTTGCATGGTT+TGG + 32661:12872-12891 MS.gene44913:CDS 40.0%
! ATTTGGCAGGTCTGTCTTTT+GGG + 32661:14630-14649 MS.gene44913:intron 40.0%
! GGAAGCATAGATTGCCTAAA+TGG + 32661:12844-12863 MS.gene44913:CDS 40.0%
!! AGTTTCTGGTTGTTCTTCCT+TGG + 32661:13995-14014 MS.gene44913:intron 40.0%
!! CTATCTAGTACTGGTCTGTA+TGG - 32661:13092-13111 None:intergenic 40.0%
!! GGAGGGTATCAATGGATTAA+TGG - 32661:15890-15909 None:intergenic 40.0%
!! GGGTATCAATGGATTAATGG+AGG - 32661:15887-15906 None:intergenic 40.0%
!! TATGGGGAGGATTTTGACAT+GGG + 32661:13880-13899 MS.gene44913:intron 40.0%
!! TTTGTCCACCTATTTTAGGG+GGG + 32661:13825-13844 MS.gene44913:intron 40.0%
!!! AGAGGGTTTTTGGATTGGTA+GGG + 32661:12823-12842 MS.gene44913:CDS 40.0%
!!! CTATGTGTGTTTTGGTATGC+CGG + 32661:14669-14688 MS.gene44913:CDS 40.0%
AACAATGTAAACACACGGCC+AGG - 32661:13566-13585 None:intergenic 45.0%
AATCAAACGCACCTTCTGCA+TGG - 32661:13048-13067 None:intergenic 45.0%
ACAAACCCCCCTAAAATAGG+TGG - 32661:13833-13852 None:intergenic 45.0%
ACAATGTAAACACACGGCCA+GGG - 32661:13565-13584 None:intergenic 45.0%
ACGAGTAGACACGACATGAT+AGG - 32661:16022-16041 None:intergenic 45.0%
AGGAATGTAGAGCTTGGACT+TGG + 32661:15242-15261 MS.gene44913:CDS 45.0%
ATTCAGGGCACATATAGTGG+AGG - 32661:14179-14198 None:intergenic 45.0%
CAAGCTAAGCTGGCAAGATA+TGG + 32661:14807-14826 MS.gene44913:CDS 45.0%
CAATACTAGGCATGGCAATG+GGG + 32661:13119-13138 MS.gene44913:intron 45.0%
CACATAGATTGCCCCAAACA+AGG - 32661:14656-14675 None:intergenic 45.0%
CATAATAGGTAGCAAGGCAG+TGG - 32661:13330-13349 None:intergenic 45.0%
CCAAGGATTTGCATAACTCG+GGG - 32661:15176-15195 None:intergenic 45.0%
CTCTAAACCGATGCATTCCT+GGG - 32661:15127-15146 None:intergenic 45.0%
GAAGCTAGGAATGTAGAGCT+TGG + 32661:15236-15255 MS.gene44913:CDS 45.0%
GCAACATCAAAGGTTGCAAC+AGG - 32661:13428-13447 None:intergenic 45.0%
GCCAAGGATTTGCATAACTC+GGG - 32661:15177-15196 None:intergenic 45.0%
GGTAGTTGTCTCTGCTTATC+TGG + 32661:13702-13721 MS.gene44913:intron 45.0%
GTCTATGAGAGTAGGGTATG+GGG - 32661:13174-13193 None:intergenic 45.0%
TACTTCACTCCTTGACGTTC+AGG + 32661:16088-16107 MS.gene44913:intron 45.0%
TCTAAACCGATGCATTCCTG+GGG - 32661:15126-15145 None:intergenic 45.0%
TGCAGTCTCAATCTTGGTTG+TGG + 32661:13474-13493 MS.gene44913:intron 45.0%
TGTGATTGAGCTTGCGTTAG+GGG + 32661:12752-12771 MS.gene44913:CDS 45.0%
TTGTCTCTCACTAAACCCTG+AGG - 32661:13291-13310 None:intergenic 45.0%
! ATGCCCTTTTTGCACATCCA+CGG + 32661:15081-15100 MS.gene44913:CDS 45.0%
! CATTTGGCAGGTCTGTCTTT+TGG + 32661:14629-14648 MS.gene44913:intron 45.0%
! CCCTGAGGCAACTTTTTGTT+TGG - 32661:13276-13295 None:intergenic 45.0%
! GGCGTGTCTTTGTTGTAATG+AGG - 32661:15643-15662 None:intergenic 45.0%
! GGGGCAATCTATGTGTGTTT+TGG + 32661:14661-14680 MS.gene44913:CDS 45.0%
! GGTTGATGCAGTCTCAATCT+TGG + 32661:13468-13487 MS.gene44913:intron 45.0%
! TAGGGGAGTTTTTCTTGCAG+AGG + 32661:12769-12788 MS.gene44913:CDS 45.0%
! TCAAGTTGCTTCCGCAATCT+AGG - 32661:14754-14773 None:intergenic 45.0%
!! ATGGGGAGGATTTTGACATG+GGG + 32661:13881-13900 MS.gene44913:intron 45.0%
!! ATTTTGACATGGGGCCATCT+TGG + 32661:13890-13909 MS.gene44913:intron 45.0%
!! GTATGGGGAGGATTTTGACA+TGG + 32661:13879-13898 MS.gene44913:intron 45.0%
!! TCTAGTAGGGAGGGTATCAA+TGG - 32661:15898-15917 None:intergenic 45.0%
!! TTTCTTGCAGAGGTATCCGA+GGG + 32661:12779-12798 MS.gene44913:CDS 45.0%
!!! CTGTCTTTTGGGCCTTGTTT+GGG + 32661:14641-14660 MS.gene44913:CDS 45.0%
!!! GAGAGGGTTTTTGGATTGGT+AGG + 32661:12822-12841 MS.gene44913:CDS 45.0%
!!! TCTGTCTTTTGGGCCTTGTT+TGG + 32661:14640-14659 MS.gene44913:CDS 45.0%
!!! TGTCTTTTGGGCCTTGTTTG+GGG + 32661:14642-14661 MS.gene44913:CDS 45.0%
!!! TTTTCTTGCAGAGGTATCCG+AGG + 32661:12778-12797 MS.gene44913:CDS 45.0%
ACAGCCGTGGATGTGCAAAA+AGG - 32661:15088-15107 None:intergenic 50.0%
AGGAATGCCAGCCTAGATTG+CGG + 32661:14740-14759 MS.gene44913:CDS 50.0%
ATGAGAGTAGGGTATGGGGA+CGG - 32661:13170-13189 None:intergenic 50.0%
CACAGTTAGAGACAGAGAGC+AGG - 32661:14137-14156 None:intergenic 50.0%
CAGCCGTGGATGTGCAAAAA+GGG - 32661:15087-15106 None:intergenic 50.0%
CCAAAAACCCTCTCCCTCAT+CGG - 32661:12816-12835 None:intergenic 50.0%
CCCCGAGTTATGCAAATCCT+TGG + 32661:15173-15192 MS.gene44913:CDS 50.0%
CCTCTAAACCGATGCATTCC+TGG - 32661:15128-15147 None:intergenic 50.0%
CTAAACCGATGCATTCCTGG+GGG - 32661:15125-15144 None:intergenic 50.0%
GTATTCCCCCAGGAATGCAT+CGG + 32661:15117-15136 MS.gene44913:CDS 50.0%
TCAGGTGACTCCAACCAAGA+TGG - 32661:13907-13926 None:intergenic 50.0%
TGGAATGGATCCAGATGCTG+AGG + 32661:14720-14739 MS.gene44913:CDS 50.0%
TTCAGAGCTTGTATTCCCCC+AGG + 32661:15107-15126 MS.gene44913:CDS 50.0%
TTCAGTTTGTCCAGCCAGTC+AGG - 32661:13925-13944 None:intergenic 50.0%
! ACTTGGTGGGATTGTCTGCA+TGG + 32661:15728-15747 MS.gene44913:intron 50.0%
!! AGAGCTTGGACTTGGTTTGC+AGG + 32661:15250-15269 MS.gene44913:CDS 50.0%
!! ATACAAGCTCTGAACAGCCG+TGG - 32661:15101-15120 None:intergenic 50.0%
!! CCAGGAATGCATCGGTTTAG+AGG + 32661:15125-15144 MS.gene44913:CDS 50.0%
!! GAGGGAGAGGGTTTTTGGAT+TGG + 32661:12818-12837 MS.gene44913:CDS 50.0%
!! TGTGCAAAAAGGGCATCTGC+AGG - 32661:15077-15096 None:intergenic 50.0%
AGAGCAGGCCCCGATGAATA+AGG - 32661:14122-14141 None:intergenic 55.0%
CTTGGTTGGAGTCACCTGAC+TGG + 32661:13908-13927 MS.gene44913:intron 55.0%
GTTGCTTCCGCAATCTAGGC+TGG - 32661:14750-14769 None:intergenic 55.0%
TACTAGGCATGGCAATGGGG+CGG + 32661:13122-13141 MS.gene44913:intron 55.0%
TGACATGGGGCCATCTTGGT+TGG + 32661:13894-13913 MS.gene44913:intron 55.0%
TGAGAGTAGGGTATGGGGAC+GGG - 32661:13169-13188 None:intergenic 55.0%
! CCGATGAGGGAGAGGGTTTT+TGG + 32661:12813-12832 MS.gene44913:CDS 55.0%
!! GCAAAAAGGGCATCTGCAGG+AGG - 32661:15074-15093 None:intergenic 55.0%
ACGTGAGGTCTGCGCATTCG+AGG + 32661:12709-12728 MS.gene44913:CDS 60.0%
ACTAGGCATGGCAATGGGGC+GGG + 32661:13123-13142 MS.gene44913:intron 60.0%
CGTTTCAGCATCCCACGTGC+CGG + 32661:12673-12692 MS.gene44913:CDS 60.0%
GCATGCGTGTGCCATGCAGA+AGG + 32661:13034-13053 MS.gene44913:intron 60.0%
GGCATCTGCAGGAGGCTGAA+TGG - 32661:15066-15085 None:intergenic 60.0%
GGCTGGCATTCCTCAGCATC+TGG - 32661:14733-14752 None:intergenic 60.0%
GTTGGAGTCACCTGACTGGC+TGG + 32661:13912-13931 MS.gene44913:intron 60.0%
GTTTCAGCATCCCACGTGCC+GGG + 32661:12674-12693 MS.gene44913:CDS 60.0%
TTTCAGCATCCCACGTGCCG+GGG + 32661:12675-12694 MS.gene44913:CDS 60.0%
!! CTTGCAGAGGTATCCGAGGG+AGG + 32661:12782-12801 MS.gene44913:CDS 60.0%
AGGTATCCGAGGGAGGCGGT+GGG + 32661:12789-12808 MS.gene44913:CDS 65.0%
CTAGGCATGGCAATGGGGCG+GGG + 32661:13124-13143 MS.gene44913:intron 65.0%
TTCAGCATCCCACGTGCCGG+GGG + 32661:12676-12695 MS.gene44913:CDS 65.0%
!! GCAGAGGTATCCGAGGGAGG+CGG + 32661:12785-12804 MS.gene44913:CDS 65.0%
ATCCCACGTGCCGGGGGAAG+GGG + 32661:12682-12701 MS.gene44913:CDS 70.0%
CAATGGGGCGGGGTGGAGAC+AGG + 32661:13134-13153 MS.gene44913:intron 70.0%
CATCCCACGTGCCGGGGGAA+GGG + 32661:12681-12700 MS.gene44913:CDS 70.0%
GGTATCCGAGGGAGGCGGTG+GGG + 32661:12790-12809 MS.gene44913:CDS 70.0%
GGTGGGGCCGATGAGGGAGA+GGG + 32661:12806-12825 MS.gene44913:CDS 70.0%
TCACGTGCCTCCCCTTCCCC+CGG - 32661:12695-12714 None:intergenic 70.0%
! GAGGTATCCGAGGGAGGCGG+TGG + 32661:12788-12807 MS.gene44913:CDS 70.0%
ATCGGCCCCACCGCCTCCCT+CGG - 32661:12798-12817 None:intergenic 75.0%
CGGTGGGGCCGATGAGGGAG+AGG + 32661:12805-12824 MS.gene44913:CDS 75.0%
CTCCCCTTCCCCCGGCACGT+GGG - 32661:12687-12706 None:intergenic 75.0%
GCATCCCACGTGCCGGGGGA+AGG + 32661:12680-12699 MS.gene44913:CDS 75.0%
GGAGGCGGTGGGGCCGATGA+GGG + 32661:12800-12819 MS.gene44913:CDS 75.0%
GGCATGGCAATGGGGCGGGG+TGG + 32661:13127-13146 MS.gene44913:intron 75.0%
! GGGGGAAGGGGAGGCACGTG+AGG + 32661:12694-12713 MS.gene44913:CDS 75.0%
! CCACGTGCCGGGGGAAGGGG+AGG + 32661:12685-12704 MS.gene44913:CDS 80.0%
! CCTCCCCTTCCCCCGGCACG+TGG - 32661:12688-12707 None:intergenic 80.0%
! GGGAGGCGGTGGGGCCGATG+AGG + 32661:12799-12818 MS.gene44913:CDS 80.0%


Chromosome Type Strat End Strand Name
32661 gene 12555 16356 12555 ID=MS.gene44913
32661 mRNA 12555 16356 12555 ID=MS.gene44913.t1;Parent=MS.gene44913
32661 exon 12555 12952 12555 ID=MS.gene44913.t1.exon1;Parent=MS.gene44913.t1
32661 CDS 12555 12952 12555 ID=cds.MS.gene44913.t1;Parent=MS.gene44913.t1
32661 exon 14639 14840 14639 ID=MS.gene44913.t1.exon2;Parent=MS.gene44913.t1
32661 CDS 14639 14840 14639 ID=cds.MS.gene44913.t1;Parent=MS.gene44913.t1
32661 exon 15071 15271 15071 ID=MS.gene44913.t1.exon3;Parent=MS.gene44913.t1
32661 CDS 15071 15271 15071 ID=cds.MS.gene44913.t1;Parent=MS.gene44913.t1
32661 exon 16270 16356 16270 ID=MS.gene44913.t1.exon4;Parent=MS.gene44913.t1
32661 CDS 16270 16356 16270 ID=cds.MS.gene44913.t1;Parent=MS.gene44913.t1
Gene Sequence

>MS.gene44913

ATGGAAACACACTTGTTAGAAGTGAAACAAGCATTAGGGTACCCTCTCCAACCCTTTGATGAAATGCTTGGTGAAGAAGATAACCCTGCTAAGCAATTTGATACGCTGTTGTATTTGGCGTTTCAGCATCCCACGTGCCGGGGGAAGGGGAGGCACGTGAGGTCTGCGCATTCGAGGTTGTTTTTTTTGGGGCAGTATGTGATTGAGCTTGCGTTAGGGGAGTTTTTCTTGCAGAGGTATCCGAGGGAGGCGGTGGGGCCGATGAGGGAGAGGGTTTTTGGATTGGTAGGGAAGCATAGATTGCCTAAATGGATTAAAAATGCTAGCTTGCATGGTTTGGTTTTTCCTAATGTTGATATGGATAAGTTGGTTAGGAAAGAAAGGGAGCAAATTGCCAAGTAAGTTAGTGAACTGTTAATTTAATTAGTTATTTGTTAATGCAATGTGCCTCTTATAATTAGTTTGTTAATTTAATTTTTGCATGCGTGTGCCATGCAGAAGGTGCGTTTGATTCGCAAAGTAAGTAAGTAAGTACCATACAGACCAGTACTAGATAGAACCAAACAATACTAGGCATGGCAATGGGGCGGGGTGGAGACAGGTTTTACTTTCCCGTCCCCATACCCTACTCTCATAGACTTACCTGTTACAATACAGAGAGAATATATTTTATGTTGGAAAATAAAAAGGGTATTTGGTATTTTTGATAGTCCATAGACCAAACAAAAAGTTGCCTCAGGGTTTAGTGAGAGACAAGAATTCTTGTTTTTGTCCACTGCCTTGCTACCTATTATGTCGAGTCTCATAACCAACTTCTAAATCAAACAGCTTTAAATAAAGGTTCGTGGTAAAGATTGCAGTTTTTGTAGTCCTGTTGCAACCTTTGATGTTGCAAATAATTGGAGTCAAATGTGGTTGATGCAGTCTCAATCTTGGTTGTGGCAATAACAAAAATCATGATGACGTGGCTTATATTGCGCATGCAGACCTCTATTTAAAAGTTAAAACCCTGGCCGTGTGTTTACATTGTTGAACACAAACTATGCATATAGTTATGTTTTTTTATGGACTTTTTGATTTTGACATGTCATGTTTGGTATCCTTTCATCCATATGGCCATTATTGCTTTGTGTTTTTAAATTATTGTGGTAGTTGTCTCTGCTTATCTGGAAGAAAGCTTTTCATGTTTTAAATTGTAGTAGAATGCCATTATTTACGATATGCTTGAATCCAAGGGAGTCAAACAAAATAAAGAAATAGATGATATGAATTTGTCCACCTATTTTAGGGGGGTTTGTTGTCGCGTATTTGCTATTTTCTTTTCGTATGGGGAGGATTTTGACATGGGGCCATCTTGGTTGGAGTCACCTGACTGGCTGGACAAACTGAATTGATTGATATGATCATAGGATTAATGCTTTCTGTTTTTATTTGCTTGTAAGTTTCTGGTTGTTCTTCCTTGGTAATCTTTTGAGCAATGGAGACTTTAGATTTGAGAATTATGTTGATGTTATTCTGCTTCAAACAGAATAAGCTTGACTAACTTTGAAATTTGGATATACATCCTTATTCATCGGGGCCTGCTCTCTGTCTCTAACTGTGTTTTTTCCATATGTCTTATCCTCCACTATATGTGCCCTGAATTTGTGATATCAGATTGTGAGTAATTCTGAGATCAATGATCCCATCTTGTTTTGAAGAGCAAGTTGTTATGATTCACGAATTGTAATGATTAAATATGGATCTAGGGAAGATAAAAATATTGATGACCTTAATCAATTTACTGTCGAACTGATAGAAACCAACTCGTATTACTAGAGAAAATAGGGATAATCCCCAAATTACAATAGAATTCCTAGAGTATTCGAAAGACTCTAGACTCTCCCAATGATAAGATGATCACTCCTGATCTCTCTTCCCTATTTATAGGCCACATGCCTTATTATGTTTATTAACTAACTAACCAACTTAACATTCCTATCACAAACTATCTTAATCAATGGAGTCAGTCTCCCATGATATCTATCTGAAATGTAATTTTCACATACTATCTAAATATTTGTAATTGTATGTGCATTTGGCAGGTCTGTCTTTTGGGCCTTGTTTGGGGCAATCTATGTGTGTTTTGGTATGCCGGAAGTGTATCGTGTTCTTTTTGAAGTTTTTGGAATGGATCCAGATGCTGAGGAATGCCAGCCTAGATTGCGGAAGCAACTTGAAGACATAGATCATGTATCTGCTGAATTTGAAGGCAAGCTAAGCTGGCAAGATATGGTTGCCTATAAGGCAAGTGCTACACATATGTCATAGCATTATTGGTTTTTTCTCCTACAAAAAGTTAGTAAATATCTAAATATAAAGCTCATGCCATCGTGGTCAAACTTAATCTTGCTTCATTATACATTCGATTTTGTTTTTCTCTCTTTTACCAAATATGCATGCGAAGTTCATTCCCTACAACATAATTTGTTTATGATATTGTTAGAAAAGCAATGTACTTACTGTTCTCCATTCAGCCTCCTGCAGATGCCCTTTTTGCACATCCACGGCTGTTCAGAGCTTGTATTCCCCCAGGAATGCATCGGTTTAGAGGAAATGTATGGGATTATGATAGCAGACCCCGAGTTATGCAAATCCTTGGCTATCCATTAGAAATGACAGATAGAATTCCAGAAATTACTGAAGCTAGGAATGTAGAGCTTGGACTTGGTTTGCAGGTAGCTATGATGCCTCTCATTCTTCTTTACCTTTTTTCATATCTGTTAGGTTTGGGTATACGATACCTATGAATACTTCAATGCATCTCTGAGCAAGAAATGACCATGTTTCTACTGCTTTCCCATTTTGGAATTCAGTATGTGAATAATATGGCATTGAAGCTGTTTGTCAGAAGCACAGATTTTATTAAAGATGCAGTTTAGTTATTGATTCTGTGGAAACTTGGAAAGCTAAATCTAAAATAGTAGAAAATACTCAAGTTATCAGTACCACACAGTCAATGATAGATATTTTATGATGTGGATATCATTTTTGTACCTATTTTAGGTATTTCTCTTCTGTATTTGGTTTATCTAAGCACATTTCACCTCATTACAACAAAGACACGCCTTAAAACCACCCAAATATTAAGCATGTTAGTAGTTTTCAACAATCAAATTAAAAGCCTTTTTTTCACTTGGTGGGATTGTCTGCATGGATCAAACGATAACTTAATATCTTATCGATAATCATGTCTAGAGAAAAACAATTGAAATCTACAACCTTTTAAGGGGTTTGACCCATAGCTTTTCCATGTCTTCCACTATTGTTTACTGTTGGACTTGGACTACCCTCCATTAATCCATTGATACCCTCCCTACTAGAGTTTTTGTATGTCGTCTTCTCACACGTAAGACAGAAAATTTCATTAACTTCTTCACAATAGTTGCTACCTTGACTTCCTCTCTACCTTATTTATTCTTAATCCTATCATGTCGTGTCTACTCGTCATTTTTGTTTTTTTTTACATTAAGCTTATTTTCTTGTTTGCTCTTTACTTCACTCCTTGACGTTCAGGTTTATACAAGCATGTCAATGGTTTAATTTGTATTCATTATATTTTATACCTTTTTCTCTAATATCCATGTAACCTTCAATAGAAGATGGTCAGCAGATCTGATCGAAAGTTACTCTAGGTTCTGTTCTGAATTCTGATAATCAATTTCTTGTTTTGCAGCTATGTTTCTTGCATCCATCAAATTACAAATTTGATCATCCTCGATTTTGCTACGAGAGATTAGAATACCTTGGTCAAAAGATAGCG

Protein sequence

>MS.gene44913.t1

METHLLEVKQALGYPLQPFDEMLGEEDNPAKQFDTLLYLAFQHPTCRGKGRHVRSAHSRLFFLGQYVIELALGEFFLQRYPREAVGPMRERVFGLVGKHRLPKWIKNASLHGLVFPNVDMDKLVRKEREQIAKSVFWALFGAIYVCFGMPEVYRVLFEVFGMDPDAEECQPRLRKQLEDIDHVSAEFEGKLSWQDMVAYKPPADALFAHPRLFRACIPPGMHRFRGNVWDYDSRPRVMQILGYPLEMTDRIPEITEARNVELGLGLQLCFLHPSNYKFDHPRFCYERLEYLGQKIA