Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65495.t1 | XP_003590036.1 | 94.8 | 600 | 31 | 0 | 3 | 602 | 1 | 600 | 0.00E+00 | 1179.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65495.t1 | Q96524 | 61.5 | 600 | 204 | 6 | 5 | 598 | 6 | 584 | 1.8e-211 | 736.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65495.t1 | G7I4R1 | 94.8 | 600 | 31 | 0 | 3 | 602 | 1 | 600 | 0.0e+00 | 1179.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene65495 | -0.828471 | 8.83E-55 | -1.69E-46 |
| MS.gene051678 | MS.gene65495 | 0.811038 | 8.55E-51 | -1.69E-46 |
| MS.gene052224 | MS.gene65495 | -0.894415 | 2.52E-75 | -1.69E-46 |
| MS.gene053217 | MS.gene65495 | 0.808889 | 2.48E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene65495 | 0.829453 | 5.10E-55 | -1.69E-46 |
| MS.gene053401 | MS.gene65495 | 0.974092 | 1.50E-137 | -1.69E-46 |
| MS.gene053509 | MS.gene65495 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene05548 | MS.gene65495 | 0.823313 | 1.48E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene65495 | 0.823379 | 1.43E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene65495 | 0.81304 | 3.13E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65495.t1 | MTR_1g043190 | 94.833 | 600 | 31 | 0 | 3 | 602 | 1 | 600 | 0.0 | 1167 |
| MS.gene65495.t1 | MTR_1g076190 | 76.033 | 605 | 138 | 6 | 1 | 602 | 1 | 601 | 0.0 | 938 |
| MS.gene65495.t1 | MTR_1g076190 | 76.033 | 605 | 138 | 6 | 1 | 602 | 1 | 601 | 0.0 | 937 |
| MS.gene65495.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 657 |
| MS.gene65495.t1 | MTR_5g063920 | 52.836 | 617 | 261 | 6 | 2 | 601 | 5 | 608 | 0.0 | 657 |
| MS.gene65495.t1 | MTR_5g063920 | 50.780 | 449 | 190 | 6 | 170 | 601 | 10 | 444 | 8.56e-152 | 447 |
| MS.gene65495.t1 | MTR_4g011370 | 28.376 | 511 | 324 | 15 | 6 | 493 | 15 | 506 | 2.76e-49 | 180 |
| MS.gene65495.t1 | MTR_4g011370 | 28.306 | 484 | 308 | 14 | 6 | 466 | 15 | 482 | 1.53e-46 | 171 |
| MS.gene65495.t1 | MTR_4g011370 | 27.059 | 510 | 308 | 16 | 6 | 493 | 15 | 482 | 6.50e-42 | 159 |
| MS.gene65495.t1 | MTR_3g108700 | 27.347 | 490 | 282 | 17 | 2 | 446 | 94 | 554 | 1.35e-29 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65495.t1 | AT1G04400 | 66.041 | 533 | 172 | 3 | 5 | 534 | 6 | 532 | 0.0 | 733 |
| MS.gene65495.t1 | AT1G04400 | 66.041 | 533 | 172 | 3 | 5 | 534 | 6 | 532 | 0.0 | 733 |
| MS.gene65495.t1 | AT4G08920 | 52.277 | 593 | 271 | 5 | 7 | 596 | 15 | 598 | 0.0 | 630 |
| MS.gene65495.t1 | AT3G15620 | 29.356 | 528 | 325 | 19 | 6 | 505 | 26 | 533 | 9.85e-54 | 192 |
| MS.gene65495.t1 | AT3G15620 | 28.910 | 422 | 256 | 18 | 6 | 399 | 26 | 431 | 5.64e-35 | 137 |
| MS.gene65495.t1 | AT5G24850 | 28.541 | 466 | 289 | 17 | 2 | 444 | 82 | 526 | 8.58e-33 | 133 |
Find 116 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGATCCTTCAATGTTTA+AGG | 0.114298 | 1.3:+25852741 | MS.gene65495:CDS |
| CTATCTCCGTATATTCATTT+TGG | 0.143302 | 1.3:+25852514 | MS.gene65495:CDS |
| GTTGTGTTTAATCATCTTTA+TGG | 0.220247 | 1.3:+25851398 | MS.gene65495:CDS |
| TAAAACTGTCCTTCCTCTTT+AGG | 0.235821 | 1.3:-25851224 | None:intergenic |
| GAAGCAGTCTCTTTCTCATT+TGG | 0.269217 | 1.3:+25851274 | MS.gene65495:CDS |
| TTGTCCTTCAAGAAAACTTT+TGG | 0.273008 | 1.3:-25853441 | None:intergenic |
| TAGTACTCTTAAAGCACTTT+TGG | 0.293721 | 1.3:+25851346 | MS.gene65495:CDS |
| GTTGGAATTCTCGCCAATTC+AGG | 0.307627 | 1.3:-25853198 | None:intergenic |
| CTCTTTGGATTCTGAAGTAT+TGG | 0.315237 | 1.3:-25853507 | None:intergenic |
| TGCAAGCATCTATTCCAAAA+AGG | 0.318620 | 1.3:-25852122 | None:intergenic |
| TTAGGAGGATCATCACTCTT+TGG | 0.321111 | 1.3:-25853522 | None:intergenic |
| TCTATGTCGATGATTGGTTT+TGG | 0.322368 | 1.3:-25853297 | None:intergenic |
| CAGGATTGTCCTCAATTCTT+AGG | 0.325372 | 1.3:-25851148 | None:intergenic |
| ATAGGACCATAGTTTGGTTT+AGG | 0.327813 | 1.3:+25851120 | MS.gene65495:CDS |
| TGTTGCTTATACCTTGGAAA+TGG | 0.329641 | 1.3:+25852881 | MS.gene65495:CDS |
| CTCATTCCTGCATCAACTAA+TGG | 0.329714 | 1.3:-25852790 | None:intergenic |
| CAAAATGAATATACGGAGAT+AGG | 0.361934 | 1.3:-25852513 | None:intergenic |
| GTTGCTTATACCTTGGAAAT+GGG | 0.366312 | 1.3:+25852882 | MS.gene65495:CDS |
| AATTCTCCAAAATGAATATA+CGG | 0.366624 | 1.3:-25852520 | None:intergenic |
| ATTAATTGACAAGGAGGAAT+AGG | 0.377359 | 1.3:-25852167 | None:intergenic |
| ACCAATCATCGACATAGATT+TGG | 0.378217 | 1.3:+25853302 | MS.gene65495:CDS |
| TCGTCAATGGCTACCTGAAT+TGG | 0.379883 | 1.3:+25853185 | MS.gene65495:CDS |
| TGATCTTGAAAGTGATATCT+TGG | 0.390550 | 1.3:+25852939 | MS.gene65495:CDS |
| ATCCTTCAATGTTTAAGGCT+TGG | 0.397995 | 1.3:+25852746 | MS.gene65495:CDS |
| ATCAGAAAATGGGTATGAAT+AGG | 0.398859 | 1.3:+25851102 | None:intergenic |
| TGCAGGAATGAGAGAGCTTT+GGG | 0.404630 | 1.3:+25852801 | MS.gene65495:CDS |
| ATGCAGGAATGAGAGAGCTT+TGG | 0.404880 | 1.3:+25852800 | MS.gene65495:CDS |
| CGCTCAAGCTCGTGACCATC+AGG | 0.409441 | 1.3:-25852988 | None:intergenic |
| GCCAAATCTATGTCGATGAT+TGG | 0.412225 | 1.3:-25853303 | None:intergenic |
| GATCAGTCACTGAAATCTCT+TGG | 0.432839 | 1.3:+25851296 | MS.gene65495:CDS |
| CTCCAAGCCTTAAACATTGA+AGG | 0.434912 | 1.3:-25852748 | None:intergenic |
| CTTCAATGTTTAAGGCTTGG+AGG | 0.448036 | 1.3:+25852749 | MS.gene65495:CDS |
| AGAGCATCAGGTGTAGAGTT+AGG | 0.453032 | 1.3:+25853264 | MS.gene65495:CDS |
| GTATGAATAGGACCATAGTT+TGG | 0.457722 | 1.3:+25851114 | MS.gene65495:CDS |
| TTGGGTTGGCAGTATATCTC+CGG | 0.458839 | 1.3:+25852958 | MS.gene65495:CDS |
| ATGAGAGAGCTTTGGGCGAC+CGG | 0.460862 | 1.3:+25852808 | MS.gene65495:CDS |
| CTTAGCAAGCGGACTGATAC+CGG | 0.467453 | 1.3:+25853603 | MS.gene65495:CDS |
| ATGTTTAAGGCTTGGAGGCT+AGG | 0.469697 | 1.3:+25852754 | MS.gene65495:CDS |
| CGATAAAGAGGATCGAGAAC+AGG | 0.478530 | 1.3:+25853566 | MS.gene65495:CDS |
| GTCCCTCCTAAACCAAACTA+TGG | 0.481040 | 1.3:-25851126 | None:intergenic |
| TTTCTGTGCAAAGCTACAAT+GGG | 0.484165 | 1.3:+25852036 | MS.gene65495:CDS |
| CCTACTGTGCTAAGAGCATC+AGG | 0.485757 | 1.3:+25853252 | MS.gene65495:CDS |
| ACTGCTTGAACTCTGTCTCT+TGG | 0.489451 | 1.3:-25853673 | None:intergenic |
| TTAGCTAGAGCATGGTCTCC+AGG | 0.494738 | 1.3:+25852391 | MS.gene65495:CDS |
| CTTCTTCGTCAAATGATCAA+AGG | 0.495047 | 1.3:+25853481 | MS.gene65495:CDS |
| CTGCATTAGCTGCTGCTGCA+AGG | 0.495862 | 1.3:+25851168 | MS.gene65495:CDS |
| AAGGCGAATACGTTCGTCAA+TGG | 0.498860 | 1.3:+25853172 | MS.gene65495:CDS |
| TGCATTAGCTGCTGCTGCAA+GGG | 0.499127 | 1.3:+25851169 | MS.gene65495:CDS |
| GGACCATAGTTTGGTTTAGG+AGG | 0.499764 | 1.3:+25851123 | MS.gene65495:CDS |
| GATCTTGAAAGTGATATCTT+GGG | 0.500193 | 1.3:+25852940 | MS.gene65495:CDS |
| CTTTATTTGGTGTCCTAAAG+AGG | 0.502443 | 1.3:+25851211 | MS.gene65495:CDS |
| TTAGCTGCTGCTGCAAGGGA+TGG | 0.503348 | 1.3:+25851173 | MS.gene65495:CDS |
| CGGGTAGAGTGTCGAGGTGG+TGG | 0.504560 | 1.3:+25851249 | MS.gene65495:CDS |
| TTCTTCGTCAAATGATCAAA+GGG | 0.505200 | 1.3:+25853482 | MS.gene65495:CDS |
| GCTTGGAGGCTAGGTAGGAC+TGG | 0.519332 | 1.3:+25852763 | MS.gene65495:CDS |
| CACCACCTCGACACTCTACC+CGG | 0.521428 | 1.3:-25851248 | None:intergenic |
| TCACTGAAATCTCTTGGAGC+TGG | 0.521850 | 1.3:+25851302 | MS.gene65495:CDS |
| CTCAAGCTATATTCAAGATG+TGG | 0.523430 | 1.3:+25853340 | MS.gene65495:CDS |
| TTAAGGCTTGGAGGCTAGGT+AGG | 0.523693 | 1.3:+25852758 | MS.gene65495:CDS |
| CGGTATCAGTCCGCTTGCTA+AGG | 0.524783 | 1.3:-25853602 | None:intergenic |
| CTTGCAGCAGCAGCTAATGC+AGG | 0.525751 | 1.3:-25851167 | None:intergenic |
| GGATATCCATTAGTTGATGC+AGG | 0.527111 | 1.3:+25852784 | MS.gene65495:CDS |
| ATTTCTGTGCAAAGCTACAA+TGG | 0.528775 | 1.3:+25852035 | MS.gene65495:CDS |
| GACCATAGTTTGGTTTAGGA+GGG | 0.533212 | 1.3:+25851124 | MS.gene65495:CDS |
| TATTTCATTCCCCATTTCCA+AGG | 0.533939 | 1.3:-25852892 | None:intergenic |
| ACCGTCGAGAGGCCATTGCT+AGG | 0.534149 | 1.3:+25852694 | MS.gene65495:CDS |
| AGGTTGGAGCAAAAGTGAAA+AGG | 0.535875 | 1.3:+25852411 | MS.gene65495:CDS |
| TAGGAGGGACCTAAGAATTG+AGG | 0.537254 | 1.3:+25851139 | MS.gene65495:CDS |
| ATTTGGTGTCCTAAAGAGGA+AGG | 0.543297 | 1.3:+25851215 | MS.gene65495:CDS |
| CCGTCGAGAGGCCATTGCTA+GGG | 0.543369 | 1.3:+25852695 | MS.gene65495:CDS |
| AATGGCCTCTCGACGGTGAA+CGG | 0.543863 | 1.3:-25852688 | None:intergenic |
| CTAGAGCATGGTCTCCAGGT+TGG | 0.544636 | 1.3:+25852395 | MS.gene65495:CDS |
| CTGAGTGGATCCATCATCCA+TGG | 0.545436 | 1.3:+25853220 | MS.gene65495:CDS |
| TGATCACGAACAAGTGAGAC+TGG | 0.549488 | 1.3:-25851981 | None:intergenic |
| GAGAGCTTTGGGCGACCGGA+TGG | 0.551139 | 1.3:+25852812 | MS.gene65495:CDS |
| GGATGATGGATCCACTCAGT+TGG | 0.557800 | 1.3:-25853216 | None:intergenic |
| ATTCAAGATGTGGGAAGATG+AGG | 0.561877 | 1.3:+25853350 | MS.gene65495:CDS |
| ACAGTAGGTGGTGCATTCCA+TGG | 0.562035 | 1.3:-25853237 | None:intergenic |
| TTGCTTATACCTTGGAAATG+GGG | 0.565679 | 1.3:+25852883 | MS.gene65495:CDS |
| AATTTCAAGTTCCCTAGCAA+TGG | 0.567410 | 1.3:-25852706 | None:intergenic |
| TTGATCAATGCATGACACTC+CGG | 0.568405 | 1.3:-25853622 | None:intergenic |
| GTGGTGCATTCCATGGATGA+TGG | 0.569550 | 1.3:-25853230 | None:intergenic |
| TGGTCACGAGCTTGAGCGGT+TGG | 0.573358 | 1.3:+25852993 | MS.gene65495:CDS |
| CCTGATGCTCTTAGCACAGT+AGG | 0.576112 | 1.3:-25853252 | None:intergenic |
| TTAGGACACCAAATAAAGAC+AGG | 0.576690 | 1.3:-25851206 | None:intergenic |
| TGGGTTGGCAGTATATCTCC+GGG | 0.580136 | 1.3:+25852959 | MS.gene65495:CDS |
| CTGATGGTCACGAGCTTGAG+CGG | 0.582318 | 1.3:+25852989 | MS.gene65495:CDS |
| TCAAGCTATATTCAAGATGT+GGG | 0.585612 | 1.3:+25853341 | MS.gene65495:CDS |
| TTGAAAGTGATATCTTGGGT+TGG | 0.587182 | 1.3:+25852944 | MS.gene65495:CDS |
| ATTTAAGTAACCTTAGCAAG+CGG | 0.591683 | 1.3:+25853592 | MS.gene65495:CDS |
| TGTGAGGAAAGTATTTCAGT+TGG | 0.593409 | 1.3:+25852546 | MS.gene65495:CDS |
| TGGCATATATATGACGAAAG+TGG | 0.593822 | 1.3:+25852077 | MS.gene65495:CDS |
| ATGGATACACAACAAAATGC+GGG | 0.597128 | 1.3:+25852831 | MS.gene65495:CDS |
| CCCTAGCAATGGCCTCTCGA+CGG | 0.600478 | 1.3:-25852695 | None:intergenic |
| GTGACCATCAGGTAAGCTCC+CGG | 0.601745 | 1.3:-25852977 | None:intergenic |
| ATTGAAGGATCAGTATTCCA+AGG | 0.605723 | 1.3:-25852733 | None:intergenic |
| AAACATTCAATTGAGCAACT+AGG | 0.612068 | 1.3:+25852331 | MS.gene65495:CDS |
| CTTTCGTCATATATATGCCA+CGG | 0.614882 | 1.3:-25852074 | None:intergenic |
| ATGCATTATTAGCTAGAGCA+TGG | 0.623271 | 1.3:+25852383 | MS.gene65495:CDS |
| TGAGTACTCTCGAAATCCAA+TGG | 0.628966 | 1.3:-25852644 | None:intergenic |
| GATGGATACACAACAAAATG+CGG | 0.629254 | 1.3:+25852830 | MS.gene65495:CDS |
| GGGACAAAATACGATTCAGA+AGG | 0.630951 | 1.3:+25853153 | MS.gene65495:CDS |
| TTTATCCGGGTAGAGTGTCG+AGG | 0.638088 | 1.3:+25851243 | MS.gene65495:CDS |
| GCTAGAATTAATTGACAAGG+AGG | 0.644384 | 1.3:-25852173 | None:intergenic |
| TGAGCGGTTGGACGATCCAG+AGG | 0.648762 | 1.3:+25853005 | MS.gene65495:CDS |
| TGGCGAGAATTCCAACTGAG+TGG | 0.655146 | 1.3:+25853205 | MS.gene65495:CDS |
| ATCTCCGGGAGCTTACCTGA+TGG | 0.656477 | 1.3:+25852973 | MS.gene65495:CDS |
| GACGAAGAAGTAGCGCCGCG+TGG | 0.670480 | 1.3:-25853468 | None:intergenic |
| AATATACGGAGATAGGAGTG+AGG | 0.680107 | 1.3:-25852506 | None:intergenic |
| TGTCAATTAATTCTAGCACA+AGG | 0.682737 | 1.3:+25852179 | MS.gene65495:CDS |
| TGTGCTAGAATTAATTGACA+AGG | 0.684750 | 1.3:-25852176 | None:intergenic |
| GATGCTCTTAGCACAGTAGG+TGG | 0.688179 | 1.3:-25853249 | None:intergenic |
| ATCCGGGTAGAGTGTCGAGG+TGG | 0.688806 | 1.3:+25851246 | MS.gene65495:CDS |
| TTGAAGGACAAGGCTCCACG+CGG | 0.705632 | 1.3:+25853453 | MS.gene65495:CDS |
| GGGACTTGTTACATGAACCG+TGG | 0.709661 | 1.3:+25852057 | MS.gene65495:CDS |
| TTCTGTGCAAAGCTACAATG+GGG | 0.718476 | 1.3:+25852037 | MS.gene65495:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTCCAAAATGAATATA+CGG | - | chr1.3:25852523-25852542 | None:intergenic | 20.0% |
| !! | ACAAAAAGTAGATTAAATCT+TGG | + | chr1.3:25852472-25852491 | MS.gene65495:CDS | 20.0% |
| !!! | AAACTTGTTTACAATTGATA+TGG | + | chr1.3:25851544-25851563 | MS.gene65495:intron | 20.0% |
| !!! | TAGTTTTGTTACATCTTTTT+CGG | - | chr1.3:25851637-25851656 | None:intergenic | 20.0% |
| ! | AAAGAAAAATTAGTGGAACT+TGG | + | chr1.3:25852011-25852030 | MS.gene65495:CDS | 25.0% |
| ! | AGATATCATACAAGTATTTG+TGG | + | chr1.3:25851731-25851750 | MS.gene65495:intron | 25.0% |
| ! | CAACATCAAAGAAAAATTAG+TGG | + | chr1.3:25852004-25852023 | MS.gene65495:CDS | 25.0% |
| ! | GTTGTGTTTAATCATCTTTA+TGG | + | chr1.3:25851398-25851417 | MS.gene65495:CDS | 25.0% |
| ! | TCAAAAAAAACTAGTGTAGT+TGG | + | chr1.3:25851677-25851696 | MS.gene65495:intron | 25.0% |
| ! | TGTAACAAAACTAGTATAGT+TGG | + | chr1.3:25851644-25851663 | MS.gene65495:intron | 25.0% |
| !! | AAAGAAATCCATCTTTTCAA+TGG | - | chr1.3:25851433-25851452 | None:intergenic | 25.0% |
| !! | AATGGGGAATGAAATATTTT+TGG | + | chr1.3:25852899-25852918 | MS.gene65495:CDS | 25.0% |
| !! | ACAAAAATGTATCGATAAAG+AGG | + | chr1.3:25853554-25853573 | MS.gene65495:CDS | 25.0% |
| !! | ATGGGGAATGAAATATTTTT+GGG | + | chr1.3:25852900-25852919 | MS.gene65495:CDS | 25.0% |
| !! | TAAAAATGTTGCTTATACCT+TGG | + | chr1.3:25852875-25852894 | MS.gene65495:CDS | 25.0% |
| !!! | AACTTCATGTTTATTTTCTG+AGG | - | chr1.3:25853394-25853413 | None:intergenic | 25.0% |
| !!! | ACTACACTAGTTTTTTTTGA+AGG | - | chr1.3:25851677-25851696 | None:intergenic | 25.0% |
| !!! | CATTTTTGTTTCTTCGTATT+AGG | - | chr1.3:25853543-25853562 | None:intergenic | 25.0% |
| !!! | GTTTGTTTCTTTTGTTGTTT+TGG | + | chr1.3:25852291-25852310 | MS.gene65495:intron | 25.0% |
| !!! | TACTTTTTGTGTAGTGAATT+AGG | - | chr1.3:25852462-25852481 | None:intergenic | 25.0% |
| AAACATTCAATTGAGCAACT+AGG | + | chr1.3:25852331-25852350 | MS.gene65495:CDS | 30.0% | |
| AAGTGATTCCATTGAAAAGA+TGG | + | chr1.3:25851422-25851441 | MS.gene65495:intron | 30.0% | |
| ATTAATTGACAAGGAGGAAT+AGG | - | chr1.3:25852170-25852189 | None:intergenic | 30.0% | |
| ATTTAAGTAACCTTAGCAAG+CGG | + | chr1.3:25853592-25853611 | MS.gene65495:CDS | 30.0% | |
| CAAAATGAATATACGGAGAT+AGG | - | chr1.3:25852516-25852535 | None:intergenic | 30.0% | |
| CAGATAACCAAATAGAAAGA+CGG | - | chr1.3:25851835-25851854 | None:intergenic | 30.0% | |
| CTATTTGGTTATCTGATATG+CGG | + | chr1.3:25851840-25851859 | MS.gene65495:intron | 30.0% | |
| GAATGAGTGTGATAAATTCA+TGG | - | chr1.3:25851794-25851813 | None:intergenic | 30.0% | |
| GATATGAAACAGATTAGTGA+AGG | - | chr1.3:25851916-25851935 | None:intergenic | 30.0% | |
| GATCTTGAAAGTGATATCTT+GGG | + | chr1.3:25852940-25852959 | MS.gene65495:CDS | 30.0% | |
| TACCTCGAGAGTTAATAAAT+CGG | + | chr1.3:25851511-25851530 | MS.gene65495:intron | 30.0% | |
| TACTGATCCTTCAATGTTTA+AGG | + | chr1.3:25852741-25852760 | MS.gene65495:CDS | 30.0% | |
| TCAAGCTATATTCAAGATGT+GGG | + | chr1.3:25853341-25853360 | MS.gene65495:CDS | 30.0% | |
| TCTATTCCAAAAAGGATCAA+AGG | - | chr1.3:25852117-25852136 | None:intergenic | 30.0% | |
| TGAATTTATCACACTCATTC+CGG | + | chr1.3:25851794-25851813 | MS.gene65495:intron | 30.0% | |
| TGATCTTGAAAGTGATATCT+TGG | + | chr1.3:25852939-25852958 | MS.gene65495:CDS | 30.0% | |
| TGTCAATTAATTCTAGCACA+AGG | + | chr1.3:25852179-25852198 | MS.gene65495:CDS | 30.0% | |
| TGTGCTAGAATTAATTGACA+AGG | - | chr1.3:25852179-25852198 | None:intergenic | 30.0% | |
| TTCTTCGTCAAATGATCAAA+GGG | + | chr1.3:25853482-25853501 | MS.gene65495:CDS | 30.0% | |
| ! | AAAAGTTTTCTTGAAGGACA+AGG | + | chr1.3:25853443-25853462 | MS.gene65495:CDS | 30.0% |
| ! | AACTTTTGTGAACAGATTCA+AGG | + | chr1.3:25853132-25853151 | MS.gene65495:intron | 30.0% |
| ! | ACTTTTGTGAACAGATTCAA+GGG | + | chr1.3:25853133-25853152 | MS.gene65495:intron | 30.0% |
| ! | CAGATTTTATGGAAAAACGA+AGG | + | chr1.3:25852580-25852599 | MS.gene65495:CDS | 30.0% |
| ! | CTATCTCCGTATATTCATTT+TGG | + | chr1.3:25852514-25852533 | MS.gene65495:CDS | 30.0% |
| ! | GATTCCAAAAGTTTTCTTGA+AGG | + | chr1.3:25853437-25853456 | MS.gene65495:CDS | 30.0% |
| ! | TTACAACCTTTGATCCTTTT+TGG | + | chr1.3:25852108-25852127 | MS.gene65495:CDS | 30.0% |
| ! | TTGTCCTTCAAGAAAACTTT+TGG | - | chr1.3:25853444-25853463 | None:intergenic | 30.0% |
| ! | TTGTGTTTTCTTGTATTGCA+CGG | + | chr1.3:25853032-25853051 | MS.gene65495:intron | 30.0% |
| !! | CTGTTTTTCCTGTCTTTATT+TGG | + | chr1.3:25851198-25851217 | MS.gene65495:CDS | 30.0% |
| !! | TAGGTTGTTTTCGACAAATT+CGG | - | chr1.3:25852443-25852462 | None:intergenic | 30.0% |
| !! | TAGTACTCTTAAAGCACTTT+TGG | + | chr1.3:25851346-25851365 | MS.gene65495:CDS | 30.0% |
| !! | TTCATGTTTATTTTCTGAGG+TGG | - | chr1.3:25853391-25853410 | None:intergenic | 30.0% |
| !! | TTTTGTTTCTTCGTATTAGG+AGG | - | chr1.3:25853540-25853559 | None:intergenic | 30.0% |
| !!! | GGAACTTGAAATTTTTTCCT+TGG | + | chr1.3:25852716-25852735 | MS.gene65495:CDS | 30.0% |
| AAAAACGAAGGAAACATCGT+CGG | + | chr1.3:25852592-25852611 | MS.gene65495:CDS | 35.0% | |
| AAGAAAACACAACTTACCTC+TGG | - | chr1.3:25853024-25853043 | None:intergenic | 35.0% | |
| ACCAATCATCGACATAGATT+TGG | + | chr1.3:25853302-25853321 | MS.gene65495:CDS | 35.0% | |
| ACTGGATCTGTTAAAAGAAG+TGG | - | chr1.3:25851966-25851985 | None:intergenic | 35.0% | |
| ATGCATTATTAGCTAGAGCA+TGG | + | chr1.3:25852383-25852402 | MS.gene65495:CDS | 35.0% | |
| ATGGATACACAACAAAATGC+GGG | + | chr1.3:25852831-25852850 | MS.gene65495:CDS | 35.0% | |
| ATTGAAGGATCAGTATTCCA+AGG | - | chr1.3:25852736-25852755 | None:intergenic | 35.0% | |
| ATTTCTGTGCAAAGCTACAA+TGG | + | chr1.3:25852035-25852054 | MS.gene65495:CDS | 35.0% | |
| CTCAAGCTATATTCAAGATG+TGG | + | chr1.3:25853340-25853359 | MS.gene65495:CDS | 35.0% | |
| CTTCTTCGTCAAATGATCAA+AGG | + | chr1.3:25853481-25853500 | MS.gene65495:CDS | 35.0% | |
| CTTTCGTCATATATATGCCA+CGG | - | chr1.3:25852077-25852096 | None:intergenic | 35.0% | |
| GATGGATACACAACAAAATG+CGG | + | chr1.3:25852830-25852849 | MS.gene65495:CDS | 35.0% | |
| GCTAGAATTAATTGACAAGG+AGG | - | chr1.3:25852176-25852195 | None:intergenic | 35.0% | |
| GTATGAATAGGACCATAGTT+TGG | + | chr1.3:25851114-25851133 | MS.gene65495:CDS | 35.0% | |
| GTTGCTTATACCTTGGAAAT+GGG | + | chr1.3:25852882-25852901 | MS.gene65495:CDS | 35.0% | |
| TAAAACTGTCCTTCCTCTTT+AGG | - | chr1.3:25851227-25851246 | None:intergenic | 35.0% | |
| TAAAAGAAGTGGAGATCATC+AGG | - | chr1.3:25851955-25851974 | None:intergenic | 35.0% | |
| TATTTCATTCCCCATTTCCA+AGG | - | chr1.3:25852895-25852914 | None:intergenic | 35.0% | |
| TGCAAGCATCTATTCCAAAA+AGG | - | chr1.3:25852125-25852144 | None:intergenic | 35.0% | |
| TGGCATATATATGACGAAAG+TGG | + | chr1.3:25852077-25852096 | MS.gene65495:CDS | 35.0% | |
| TGTTTCACCGTCTTTCTATT+TGG | + | chr1.3:25851825-25851844 | MS.gene65495:intron | 35.0% | |
| TTAGGACACCAAATAAAGAC+AGG | - | chr1.3:25851209-25851228 | None:intergenic | 35.0% | |
| TTATTAACTCTCGAGGTAAC+AGG | - | chr1.3:25851509-25851528 | None:intergenic | 35.0% | |
| TTGAAAGTGATATCTTGGGT+TGG | + | chr1.3:25852944-25852963 | MS.gene65495:CDS | 35.0% | |
| TTGCTTATACCTTGGAAATG+GGG | + | chr1.3:25852883-25852902 | MS.gene65495:CDS | 35.0% | |
| TTTCTGTGCAAAGCTACAAT+GGG | + | chr1.3:25852036-25852055 | MS.gene65495:CDS | 35.0% | |
| ! | ACATAAACTGATTCTCACTC+TGG | - | chr1.3:25851588-25851607 | None:intergenic | 35.0% |
| ! | ATAGGACCATAGTTTGGTTT+AGG | + | chr1.3:25851120-25851139 | MS.gene65495:CDS | 35.0% |
| ! | ATCCTTCAATGTTTAAGGCT+TGG | + | chr1.3:25852746-25852765 | MS.gene65495:CDS | 35.0% |
| ! | CACGAACGAAACAGATTTTA+TGG | + | chr1.3:25852569-25852588 | MS.gene65495:CDS | 35.0% |
| ! | TGTTGCTTATACCTTGGAAA+TGG | + | chr1.3:25852881-25852900 | MS.gene65495:CDS | 35.0% |
| !! | AATTTCAAGTTCCCTAGCAA+TGG | - | chr1.3:25852709-25852728 | None:intergenic | 35.0% |
| !! | ATTTTGGAGAATTGAGTGTG+AGG | + | chr1.3:25852530-25852549 | MS.gene65495:CDS | 35.0% |
| !! | CATTTTGTTGTGTATCCATC+CGG | - | chr1.3:25852830-25852849 | None:intergenic | 35.0% |
| !! | CTCTTTGGATTCTGAAGTAT+TGG | - | chr1.3:25853510-25853529 | None:intergenic | 35.0% |
| !! | CTTTATTTGGTGTCCTAAAG+AGG | + | chr1.3:25851211-25851230 | MS.gene65495:CDS | 35.0% |
| !! | TACCGATTTATTAACTCTCG+AGG | - | chr1.3:25851516-25851535 | None:intergenic | 35.0% |
| !! | TGTGAGGAAAGTATTTCAGT+TGG | + | chr1.3:25852546-25852565 | MS.gene65495:CDS | 35.0% |
| !!! | ACGTTTTTTCTCAAAGCCAT+TGG | + | chr1.3:25852628-25852647 | MS.gene65495:CDS | 35.0% |
| !!! | TCTATGTCGATGATTGGTTT+TGG | - | chr1.3:25853300-25853319 | None:intergenic | 35.0% |
| !!! | TCTTTTGTTGTTTTGGTGAC+AGG | + | chr1.3:25852298-25852317 | MS.gene65495:intron | 35.0% |
| AATATACGGAGATAGGAGTG+AGG | - | chr1.3:25852509-25852528 | None:intergenic | 40.0% | |
| AGGTTGGAGCAAAAGTGAAA+AGG | + | chr1.3:25852411-25852430 | MS.gene65495:CDS | 40.0% | |
| ATTCAAGATGTGGGAAGATG+AGG | + | chr1.3:25853350-25853369 | MS.gene65495:CDS | 40.0% | |
| CAGGATTGTCCTCAATTCTT+AGG | - | chr1.3:25851151-25851170 | None:intergenic | 40.0% | |
| CTCATTCCTGCATCAACTAA+TGG | - | chr1.3:25852793-25852812 | None:intergenic | 40.0% | |
| CTCCAAGCCTTAAACATTGA+AGG | - | chr1.3:25852751-25852770 | None:intergenic | 40.0% | |
| GAAGCAGTCTCTTTCTCATT+TGG | + | chr1.3:25851274-25851293 | MS.gene65495:CDS | 40.0% | |
| GATCAGTCACTGAAATCTCT+TGG | + | chr1.3:25851296-25851315 | MS.gene65495:CDS | 40.0% | |
| GCCAAATCTATGTCGATGAT+TGG | - | chr1.3:25853306-25853325 | None:intergenic | 40.0% | |
| GGGACAAAATACGATTCAGA+AGG | + | chr1.3:25853153-25853172 | MS.gene65495:CDS | 40.0% | |
| TGAGTACTCTCGAAATCCAA+TGG | - | chr1.3:25852647-25852666 | None:intergenic | 40.0% | |
| TTAGGAGGATCATCACTCTT+TGG | - | chr1.3:25853525-25853544 | None:intergenic | 40.0% | |
| TTCTGTGCAAAGCTACAATG+GGG | + | chr1.3:25852037-25852056 | MS.gene65495:CDS | 40.0% | |
| TTGATCAATGCATGACACTC+CGG | - | chr1.3:25853625-25853644 | None:intergenic | 40.0% | |
| ! | CTTCAATGTTTAAGGCTTGG+AGG | + | chr1.3:25852749-25852768 | MS.gene65495:CDS | 40.0% |
| ! | GACCATAGTTTGGTTTAGGA+GGG | + | chr1.3:25851124-25851143 | MS.gene65495:CDS | 40.0% |
| ! | GGATATCCATTAGTTGATGC+AGG | + | chr1.3:25852784-25852803 | MS.gene65495:CDS | 40.0% |
| !! | AGAGGAAGGACAGTTTTATC+CGG | + | chr1.3:25851229-25851248 | MS.gene65495:CDS | 40.0% |
| !! | ATTTGGTGTCCTAAAGAGGA+AGG | + | chr1.3:25851215-25851234 | MS.gene65495:CDS | 40.0% |
| !! | TTTTCACTTTTGCTCCAACC+TGG | - | chr1.3:25852412-25852431 | None:intergenic | 40.0% |
| AAGGCGAATACGTTCGTCAA+TGG | + | chr1.3:25853172-25853191 | MS.gene65495:CDS | 45.0% | |
| ACGGTGAAACATTCAGACAC+CGG | - | chr1.3:25851816-25851835 | None:intergenic | 45.0% | |
| ACTGCTTGAACTCTGTCTCT+TGG | - | chr1.3:25853676-25853695 | None:intergenic | 45.0% | |
| ATGCAGGAATGAGAGAGCTT+TGG | + | chr1.3:25852800-25852819 | MS.gene65495:CDS | 45.0% | |
| CGATAAAGAGGATCGAGAAC+AGG | + | chr1.3:25853566-25853585 | MS.gene65495:CDS | 45.0% | |
| GTCCCTCCTAAACCAAACTA+TGG | - | chr1.3:25851129-25851148 | None:intergenic | 45.0% | |
| GTTGGAATTCTCGCCAATTC+AGG | - | chr1.3:25853201-25853220 | None:intergenic | 45.0% | |
| TAGGAGGGACCTAAGAATTG+AGG | + | chr1.3:25851139-25851158 | MS.gene65495:CDS | 45.0% | |
| TCACTGAAATCTCTTGGAGC+TGG | + | chr1.3:25851302-25851321 | MS.gene65495:CDS | 45.0% | |
| TCGTCAATGGCTACCTGAAT+TGG | + | chr1.3:25853185-25853204 | MS.gene65495:CDS | 45.0% | |
| TGATCACGAACAAGTGAGAC+TGG | - | chr1.3:25851984-25852003 | None:intergenic | 45.0% | |
| TGCAGGAATGAGAGAGCTTT+GGG | + | chr1.3:25852801-25852820 | MS.gene65495:CDS | 45.0% | |
| ! | AGAGCATCAGGTGTAGAGTT+AGG | + | chr1.3:25853264-25853283 | MS.gene65495:CDS | 45.0% |
| ! | ATGTTTAAGGCTTGGAGGCT+AGG | + | chr1.3:25852754-25852773 | MS.gene65495:CDS | 45.0% |
| ! | GGACCATAGTTTGGTTTAGG+AGG | + | chr1.3:25851123-25851142 | MS.gene65495:CDS | 45.0% |
| !! | GAGGAAGGACAGTTTTATCC+GGG | + | chr1.3:25851230-25851249 | MS.gene65495:CDS | 45.0% |
| !! | TTGGGTTGGCAGTATATCTC+CGG | + | chr1.3:25852958-25852977 | MS.gene65495:CDS | 45.0% |
| ACAGTAGGTGGTGCATTCCA+TGG | - | chr1.3:25853240-25853259 | None:intergenic | 50.0% | |
| CCTGATGCTCTTAGCACAGT+AGG | - | chr1.3:25853255-25853274 | None:intergenic | 50.0% | |
| CTGAGTGGATCCATCATCCA+TGG | + | chr1.3:25853220-25853239 | MS.gene65495:CDS | 50.0% | |
| GATGCTCTTAGCACAGTAGG+TGG | - | chr1.3:25853252-25853271 | None:intergenic | 50.0% | |
| GTGGTGCATTCCATGGATGA+TGG | - | chr1.3:25853233-25853252 | None:intergenic | 50.0% | |
| TGCATTAGCTGCTGCTGCAA+GGG | + | chr1.3:25851169-25851188 | MS.gene65495:CDS | 50.0% | |
| TGGCGAGAATTCCAACTGAG+TGG | + | chr1.3:25853205-25853224 | MS.gene65495:CDS | 50.0% | |
| TTAAGGCTTGGAGGCTAGGT+AGG | + | chr1.3:25852758-25852777 | MS.gene65495:CDS | 50.0% | |
| TTAGCTAGAGCATGGTCTCC+AGG | + | chr1.3:25852391-25852410 | MS.gene65495:CDS | 50.0% | |
| !! | CCTACTGTGCTAAGAGCATC+AGG | + | chr1.3:25853252-25853271 | MS.gene65495:CDS | 50.0% |
| !! | CTTAGCAAGCGGACTGATAC+CGG | + | chr1.3:25853603-25853622 | MS.gene65495:CDS | 50.0% |
| !! | GGATGATGGATCCACTCAGT+TGG | - | chr1.3:25853219-25853238 | None:intergenic | 50.0% |
| !! | GGGACTTGTTACATGAACCG+TGG | + | chr1.3:25852057-25852076 | MS.gene65495:CDS | 50.0% |
| !! | TGGGTTGGCAGTATATCTCC+GGG | + | chr1.3:25852959-25852978 | MS.gene65495:CDS | 50.0% |
| !! | TTTATCCGGGTAGAGTGTCG+AGG | + | chr1.3:25851243-25851262 | MS.gene65495:CDS | 50.0% |
| AATGGCCTCTCGACGGTGAA+CGG | - | chr1.3:25852691-25852710 | None:intergenic | 55.0% | |
| ATCTCCGGGAGCTTACCTGA+TGG | + | chr1.3:25852973-25852992 | MS.gene65495:CDS | 55.0% | |
| CTAGAGCATGGTCTCCAGGT+TGG | + | chr1.3:25852395-25852414 | MS.gene65495:CDS | 55.0% | |
| CTGATGGTCACGAGCTTGAG+CGG | + | chr1.3:25852989-25853008 | MS.gene65495:CDS | 55.0% | |
| CTGCATTAGCTGCTGCTGCA+AGG | + | chr1.3:25851168-25851187 | MS.gene65495:CDS | 55.0% | |
| CTTGCAGCAGCAGCTAATGC+AGG | - | chr1.3:25851170-25851189 | None:intergenic | 55.0% | |
| GTGACCATCAGGTAAGCTCC+CGG | - | chr1.3:25852980-25852999 | None:intergenic | 55.0% | |
| TTAGCTGCTGCTGCAAGGGA+TGG | + | chr1.3:25851173-25851192 | MS.gene65495:CDS | 55.0% | |
| TTGAAGGACAAGGCTCCACG+CGG | + | chr1.3:25853453-25853472 | MS.gene65495:CDS | 55.0% | |
| ! | CGGTATCAGTCCGCTTGCTA+AGG | - | chr1.3:25853605-25853624 | None:intergenic | 55.0% |
| ! | GTTTTCCGTTCACCGTCGAG+AGG | + | chr1.3:25852683-25852702 | MS.gene65495:CDS | 55.0% |
| !! | ATGAGAGAGCTTTGGGCGAC+CGG | + | chr1.3:25852808-25852827 | MS.gene65495:CDS | 55.0% |
| ACCGTCGAGAGGCCATTGCT+AGG | + | chr1.3:25852694-25852713 | MS.gene65495:CDS | 60.0% | |
| CACCACCTCGACACTCTACC+CGG | - | chr1.3:25851251-25851270 | None:intergenic | 60.0% | |
| CCCTAGCAATGGCCTCTCGA+CGG | - | chr1.3:25852698-25852717 | None:intergenic | 60.0% | |
| CCGTCGAGAGGCCATTGCTA+GGG | + | chr1.3:25852695-25852714 | MS.gene65495:CDS | 60.0% | |
| CGCTCAAGCTCGTGACCATC+AGG | - | chr1.3:25852991-25853010 | None:intergenic | 60.0% | |
| GCTTGGAGGCTAGGTAGGAC+TGG | + | chr1.3:25852763-25852782 | MS.gene65495:CDS | 60.0% | |
| TGAGCGGTTGGACGATCCAG+AGG | + | chr1.3:25853005-25853024 | MS.gene65495:CDS | 60.0% | |
| TGGTCACGAGCTTGAGCGGT+TGG | + | chr1.3:25852993-25853012 | MS.gene65495:CDS | 60.0% | |
| !! | ATCCGGGTAGAGTGTCGAGG+TGG | + | chr1.3:25851246-25851265 | MS.gene65495:CDS | 60.0% |
| GACGAAGAAGTAGCGCCGCG+TGG | - | chr1.3:25853471-25853490 | None:intergenic | 65.0% | |
| !! | CGGGTAGAGTGTCGAGGTGG+TGG | + | chr1.3:25851249-25851268 | MS.gene65495:CDS | 65.0% |
| !! | GAGAGCTTTGGGCGACCGGA+TGG | + | chr1.3:25852812-25852831 | MS.gene65495:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25851110 | 25853716 | 25851110 | ID=MS.gene65495 |
| chr1.3 | mRNA | 25851110 | 25853716 | 25851110 | ID=MS.gene65495.t1;Parent=MS.gene65495 |
| chr1.3 | exon | 25851110 | 25851419 | 25851110 | ID=MS.gene65495.t1.exon1;Parent=MS.gene65495.t1 |
| chr1.3 | CDS | 25851110 | 25851419 | 25851110 | ID=cds.MS.gene65495.t1;Parent=MS.gene65495.t1 |
| chr1.3 | exon | 25851979 | 25852200 | 25851979 | ID=MS.gene65495.t1.exon2;Parent=MS.gene65495.t1 |
| chr1.3 | CDS | 25851979 | 25852200 | 25851979 | ID=cds.MS.gene65495.t1;Parent=MS.gene65495.t1 |
| chr1.3 | exon | 25852320 | 25853026 | 25852320 | ID=MS.gene65495.t1.exon3;Parent=MS.gene65495.t1 |
| chr1.3 | CDS | 25852320 | 25853026 | 25852320 | ID=cds.MS.gene65495.t1;Parent=MS.gene65495.t1 |
| chr1.3 | exon | 25853147 | 25853716 | 25853147 | ID=MS.gene65495.t1.exon4;Parent=MS.gene65495.t1 |
| chr1.3 | CDS | 25853147 | 25853716 | 25853147 | ID=cds.MS.gene65495.t1;Parent=MS.gene65495.t1 |
| Gene Sequence |
| Protein sequence |
