Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05434.t1 | RDX58521.1 | 45.9 | 290 | 106 | 5 | 20 | 270 | 1 | 278 | 1.70E-56 | 229.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05434.t1 | A0A371E1C2 | 45.9 | 290 | 106 | 5 | 20 | 270 | 1 | 278 | 1.2e-56 | 229.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05434 | MS.gene060918 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene05434 | MS.gene23945 | 0.817216 | 3.70E-52 | -1.69E-46 |
| MS.gene05434 | MS.gene43040 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene05434 | MS.gene52059 | 0.803295 | 3.73E-49 | -1.69E-46 |
| MS.gene05434 | MS.gene56057 | 0.803396 | 3.56E-49 | -1.69E-46 |
| MS.gene05434 | MS.gene67105 | 0.810854 | 9.37E-51 | -1.69E-46 |
| MS.gene05434 | MS.gene69794 | 0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene05434 | MS.gene73227 | 0.812939 | 3.29E-51 | -1.69E-46 |
| MS.gene05434 | MS.gene80853 | 0.8151 | 1.10E-51 | -1.69E-46 |
| MS.gene05434 | MS.gene86422 | 0.809258 | 2.07E-50 | -1.69E-46 |
| MS.gene05434 | MS.gene97782 | 0.802588 | 5.23E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05434.t1 | MTR_3g436320 | 52.284 | 197 | 40 | 3 | 40 | 232 | 1 | 147 | 1.62e-56 | 181 |
| MS.gene05434.t1 | MTR_6g022470 | 45.455 | 187 | 77 | 7 | 138 | 304 | 56 | 237 | 5.21e-33 | 124 |
| MS.gene05434.t1 | MTR_8g464800 | 48.315 | 89 | 46 | 0 | 24 | 112 | 1 | 89 | 3.84e-21 | 93.6 |
| MS.gene05434.t1 | MTR_2g048835 | 25.106 | 235 | 119 | 4 | 35 | 212 | 190 | 424 | 5.83e-15 | 75.9 |
| MS.gene05434.t1 | MTR_5g081480 | 29.474 | 190 | 110 | 5 | 139 | 318 | 700 | 875 | 8.17e-14 | 72.8 |
| MS.gene05434.t1 | MTR_2g461790 | 34.416 | 154 | 91 | 3 | 135 | 286 | 20 | 165 | 1.29e-13 | 68.9 |
| MS.gene05434.t1 | MTR_6g462630 | 44.000 | 75 | 42 | 0 | 139 | 213 | 78 | 152 | 7.77e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAATGCGTACATAATT+TGG | 0.164504 | 6.1:-73414777 | None:intergenic |
| CACTCAAACATTGTTATTAC+TGG | 0.218904 | 6.1:-73413783 | None:intergenic |
| CTTATCTCTTTGCAACAATA+TGG | 0.283255 | 6.1:-73413760 | None:intergenic |
| AATATCAGGATAGTTAGTTT+TGG | 0.296316 | 6.1:-73414187 | None:intergenic |
| ACCTCATAGCATTCTCTCTA+AGG | 0.301936 | 6.1:-73413839 | None:intergenic |
| ACTTGGTCCCTTTGGTTTGC+CGG | 0.313311 | 6.1:-73414619 | None:intergenic |
| TTCCTAAGAATGACAGAAAC+AGG | 0.316898 | 6.1:+73413492 | None:intergenic |
| TCTTTGGTTGATTAACAATC+TGG | 0.322395 | 6.1:-73414479 | None:intergenic |
| ACATCACATCTTGAATAAAA+AGG | 0.322483 | 6.1:-73413702 | None:intergenic |
| TTTGTAGATGTGGTTTCATC+TGG | 0.346888 | 6.1:-73414267 | None:intergenic |
| TAAGCAGGTGGCAGAATATC+AGG | 0.353783 | 6.1:-73414201 | None:intergenic |
| CTTATGTTCATAGGTACTAT+AGG | 0.355669 | 6.1:+73414102 | MS.gene05434:CDS |
| ATGAAACCACATCTACAAAT+AGG | 0.365104 | 6.1:+73414271 | MS.gene05434:CDS |
| GAATAATTAGGGGAGATCTA+AGG | 0.368116 | 6.1:+73414581 | MS.gene05434:intron |
| TATTCTGCCACCTGCTTACA+AGG | 0.398253 | 6.1:+73414206 | MS.gene05434:CDS |
| TGCTTACACCAACACTTTGT+AGG | 0.404809 | 6.1:-73413672 | None:intergenic |
| CTAGGACAAGAACTACAAAT+AGG | 0.413048 | 6.1:+73414298 | MS.gene05434:CDS |
| CCTGCTTACAAGGGTGGTCC+TGG | 0.439160 | 6.1:+73414216 | MS.gene05434:CDS |
| CTATTCTGATTGTGAGGTGC+AGG | 0.442103 | 6.1:-73414420 | None:intergenic |
| ACCCACAAACTTATGTTCAT+AGG | 0.456194 | 6.1:+73414093 | MS.gene05434:CDS |
| TGGAATATGGTCACAATGCT+AGG | 0.457169 | 6.1:+73414334 | MS.gene05434:CDS |
| TGTAATGTGTGCTTGGAATA+TGG | 0.458970 | 6.1:+73414321 | MS.gene05434:CDS |
| AGTCCACCTATTTGTAGATG+TGG | 0.463001 | 6.1:-73414277 | None:intergenic |
| CACATGTTCTGCCCATTGAT+AGG | 0.463749 | 6.1:-73414162 | None:intergenic |
| GGTTTGCCGGCCTTCATAGC+AGG | 0.463957 | 6.1:-73414606 | None:intergenic |
| GAAGGCATTACACCTATCAA+TGG | 0.491396 | 6.1:+73414150 | MS.gene05434:CDS |
| ATCTAAGGGTCCTGCTATGA+AGG | 0.494453 | 6.1:+73414596 | MS.gene05434:CDS |
| GCTTACACCAACACTTTGTA+GGG | 0.494936 | 6.1:-73413671 | None:intergenic |
| GAAGAAAGTTCCTGGTAGGA+TGG | 0.498355 | 6.1:+73414887 | MS.gene05434:CDS |
| GCACCTCACAATCAGAATAG+TGG | 0.501810 | 6.1:+73414423 | MS.gene05434:CDS |
| GGGTAGCAAACCTAGACATC+AGG | 0.503875 | 6.1:-73413818 | None:intergenic |
| AATAATTAGGGGAGATCTAA+GGG | 0.504165 | 6.1:+73414582 | MS.gene05434:intron |
| TACCTATGAACATAAGTTTG+TGG | 0.505178 | 6.1:-73414095 | None:intergenic |
| TAAGATGAATGAGATGAAAG+AGG | 0.508491 | 6.1:+73413614 | MS.gene05434:CDS |
| GTTTCAGCATCAACTTCAGC+AGG | 0.510756 | 6.1:-73414699 | None:intergenic |
| GATATGTCGGTTCACAAATG+AGG | 0.512046 | 6.1:+73413541 | MS.gene05434:CDS |
| ACCTATGAACATAAGTTTGT+GGG | 0.512160 | 6.1:-73414094 | None:intergenic |
| AAGAAAGTTCCTGGTAGGAT+GGG | 0.512739 | 6.1:+73414888 | MS.gene05434:CDS |
| CATCTACAAATAGGTGGACT+AGG | 0.514726 | 6.1:+73414280 | MS.gene05434:CDS |
| TAAGAACATACCTGATGTCT+AGG | 0.522085 | 6.1:+73413808 | MS.gene05434:CDS |
| CTTACAAGGGTGGTCCTGGT+AGG | 0.524629 | 6.1:+73414220 | MS.gene05434:CDS |
| TGCAAAGGCCACATATTATG+AGG | 0.525140 | 6.1:+73413581 | MS.gene05434:CDS |
| AGGCCACATATTATGAGGCA+TGG | 0.536166 | 6.1:+73413586 | MS.gene05434:CDS |
| TTAAGCTTGAGGCTTATGAA+TGG | 0.536578 | 6.1:+73413637 | MS.gene05434:CDS |
| AAATAGGTGTAATGTGTGCT+TGG | 0.539054 | 6.1:+73414314 | MS.gene05434:CDS |
| CCAGGACCACCCTTGTAAGC+AGG | 0.541206 | 6.1:-73414216 | None:intergenic |
| CAATGCTAGGACATGTAAGA+AGG | 0.543980 | 6.1:+73414347 | MS.gene05434:CDS |
| TATCATGATTGCTGCTGCAA+AGG | 0.548433 | 6.1:+73413566 | MS.gene05434:CDS |
| ATGAAGGCCGGCAAACCAAA+GGG | 0.549341 | 6.1:+73414612 | MS.gene05434:CDS |
| AAGGCATTACACCTATCAAT+GGG | 0.552118 | 6.1:+73414151 | MS.gene05434:CDS |
| TGAAGAAGAAAGTTCCTGGT+AGG | 0.552225 | 6.1:+73414883 | MS.gene05434:CDS |
| CTCCCATGCCTCATAATATG+TGG | 0.555662 | 6.1:-73413589 | None:intergenic |
| TAGCTATCCCTACAAAGTGT+TGG | 0.557591 | 6.1:+73413664 | MS.gene05434:CDS |
| GGCCACATATTATGAGGCAT+GGG | 0.559005 | 6.1:+73413587 | MS.gene05434:CDS |
| TAATTGATCCCCATCCTACC+AGG | 0.559440 | 6.1:-73414897 | None:intergenic |
| CCCTTAGAGAGAATGCTATG+AGG | 0.562383 | 6.1:+73413838 | MS.gene05434:CDS |
| CCTCATAGCATTCTCTCTAA+GGG | 0.566501 | 6.1:-73413838 | None:intergenic |
| TATGAAGGCCGGCAAACCAA+AGG | 0.567169 | 6.1:+73414611 | MS.gene05434:CDS |
| CTGCCACCTGCTTACAAGGG+TGG | 0.567908 | 6.1:+73414210 | MS.gene05434:CDS |
| AAGGGTCCTGCTATGAAGGC+CGG | 0.570953 | 6.1:+73414600 | MS.gene05434:CDS |
| AGAAAGTTCCTGGTAGGATG+GGG | 0.573754 | 6.1:+73414889 | MS.gene05434:CDS |
| TGGACAAGCTGCTGCAGTGT+TGG | 0.577032 | 6.1:+73414443 | MS.gene05434:CDS |
| GCTGCAGTGTTGGCAACACA+AGG | 0.577898 | 6.1:+73414453 | MS.gene05434:CDS |
| AATATAGAGTGTTACACTGA+AGG | 0.588127 | 6.1:+73414132 | MS.gene05434:CDS |
| CTATCAATGGGCAGAACATG+TGG | 0.588399 | 6.1:+73414163 | MS.gene05434:CDS |
| AAGAAAGGGACACAAGGTGA+TGG | 0.590418 | 6.1:+73414654 | MS.gene05434:CDS |
| TGACTACGTGCTGCAACAGT+AGG | 0.592301 | 6.1:-73414735 | None:intergenic |
| ATATGTCGGTTCACAAATGA+GGG | 0.594873 | 6.1:+73413542 | MS.gene05434:CDS |
| GATGAAAGAGGTTAAGCTTG+AGG | 0.601252 | 6.1:+73413626 | MS.gene05434:CDS |
| GCAAGTTTAAGAAGATATGT+CGG | 0.603277 | 6.1:+73413528 | MS.gene05434:CDS |
| TGTCCACTATTCTGATTGTG+AGG | 0.612949 | 6.1:-73414426 | None:intergenic |
| GGTGCAGGCTCAGTTTGAAG+TGG | 0.620952 | 6.1:-73414405 | None:intergenic |
| AAACCACATCTACAAATAGG+TGG | 0.629469 | 6.1:+73414274 | MS.gene05434:CDS |
| CAGTAATAACAATGTTTGAG+TGG | 0.650291 | 6.1:+73413784 | MS.gene05434:CDS |
| AAAATTAAGAAAGGGACACA+AGG | 0.653523 | 6.1:+73414648 | MS.gene05434:CDS |
| CTGCAGTGTTGGCAACACAA+GGG | 0.667451 | 6.1:+73414454 | MS.gene05434:CDS |
| GGACCACCCTTGTAAGCAGG+TGG | 0.672442 | 6.1:-73414213 | None:intergenic |
| ATTCTGCCACCTGCTTACAA+GGG | 0.686161 | 6.1:+73414207 | MS.gene05434:CDS |
| TCCTAAGAATGACAGAAACA+GGG | 0.700312 | 6.1:+73413493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCATAAAAAAATTAAGAA+AGG | + | chr6.1:73414639-73414658 | MS.gene05434:CDS | 15.0% |
| !! | GTCATAAAAAAATTAAGAAA+GGG | + | chr6.1:73414640-73414659 | MS.gene05434:CDS | 15.0% |
| !! | TTTATCATGTAAAATTCATT+TGG | - | chr6.1:73414550-73414569 | None:intergenic | 15.0% |
| !!! | AAAATTTTTACTTGTTTCTT+TGG | - | chr6.1:73414498-73414517 | None:intergenic | 15.0% |
| !!! | TTCTTAATTTTTTTATGACT+TGG | - | chr6.1:73414639-73414658 | None:intergenic | 15.0% |
| !! | ACTTGTTTGTATGAATAATT+AGG | + | chr6.1:73414569-73414588 | MS.gene05434:intron | 20.0% |
| !! | CTTGTTTGTATGAATAATTA+GGG | + | chr6.1:73414570-73414589 | MS.gene05434:intron | 20.0% |
| !! | GTGAAATACATTTATTTGAA+GGG | - | chr6.1:73414524-73414543 | None:intergenic | 20.0% |
| !! | TGTGAAATACATTTATTTGA+AGG | - | chr6.1:73414525-73414544 | None:intergenic | 20.0% |
| !! | TTGTTTGTATGAATAATTAG+GGG | + | chr6.1:73414571-73414590 | MS.gene05434:intron | 20.0% |
| ! | AATCAAATGCGTACATAATT+TGG | - | chr6.1:73414780-73414799 | None:intergenic | 25.0% |
| ! | ACATCACATCTTGAATAAAA+AGG | - | chr6.1:73413705-73413724 | None:intergenic | 25.0% |
| !! | TTTATTTCTTTGCAGTACAT+AGG | + | chr6.1:73414798-73414817 | MS.gene05434:intron | 25.0% |
| !!! | AATATCAGGATAGTTAGTTT+TGG | - | chr6.1:73414190-73414209 | None:intergenic | 25.0% |
| !!! | ATATCAGGATAGTTAGTTTT+GGG | - | chr6.1:73414189-73414208 | None:intergenic | 25.0% |
| AAAATTAAGAAAGGGACACA+AGG | + | chr6.1:73414648-73414667 | MS.gene05434:CDS | 30.0% | |
| AATAATTAGGGGAGATCTAA+GGG | + | chr6.1:73414582-73414601 | MS.gene05434:intron | 30.0% | |
| ACCTATGAACATAAGTTTGT+GGG | - | chr6.1:73414097-73414116 | None:intergenic | 30.0% | |
| ATGAAACCACATCTACAAAT+AGG | + | chr6.1:73414271-73414290 | MS.gene05434:CDS | 30.0% | |
| CAATAATGCCAAAACCATTA+AGG | + | chr6.1:73413871-73413890 | MS.gene05434:intron | 30.0% | |
| CAGTAATAACAATGTTTGAG+TGG | + | chr6.1:73413784-73413803 | MS.gene05434:CDS | 30.0% | |
| CTTATCTCTTTGCAACAATA+TGG | - | chr6.1:73413763-73413782 | None:intergenic | 30.0% | |
| CTTATGTTCATAGGTACTAT+AGG | + | chr6.1:73414102-73414121 | MS.gene05434:CDS | 30.0% | |
| GATTGCTGCTATACATTTAA+AGG | + | chr6.1:73414064-73414083 | MS.gene05434:intron | 30.0% | |
| GCAAGTTTAAGAAGATATGT+CGG | + | chr6.1:73413528-73413547 | MS.gene05434:CDS | 30.0% | |
| TAAGATGAATGAGATGAAAG+AGG | + | chr6.1:73413614-73413633 | MS.gene05434:CDS | 30.0% | |
| TACCTATGAACATAAGTTTG+TGG | - | chr6.1:73414098-73414117 | None:intergenic | 30.0% | |
| TCTTTGGTTGATTAACAATC+TGG | - | chr6.1:73414482-73414501 | None:intergenic | 30.0% | |
| ! | AATATAGAGTGTTACACTGA+AGG | + | chr6.1:73414132-73414151 | MS.gene05434:CDS | 30.0% |
| ! | CACTCAAACATTGTTATTAC+TGG | - | chr6.1:73413786-73413805 | None:intergenic | 30.0% |
| AAACCACATCTACAAATAGG+TGG | + | chr6.1:73414274-73414293 | MS.gene05434:CDS | 35.0% | |
| AAATAGGTGTAATGTGTGCT+TGG | + | chr6.1:73414314-73414333 | MS.gene05434:CDS | 35.0% | |
| AATAGACTTGTCTGTCAAGT+AGG | - | chr6.1:73413976-73413995 | None:intergenic | 35.0% | |
| ACCCACAAACTTATGTTCAT+AGG | + | chr6.1:73414093-73414112 | MS.gene05434:CDS | 35.0% | |
| ATAGATGCACTTGCAATTTC+TGG | + | chr6.1:73414012-73414031 | MS.gene05434:intron | 35.0% | |
| CTAGGACAAGAACTACAAAT+AGG | + | chr6.1:73414298-73414317 | MS.gene05434:CDS | 35.0% | |
| GAATAATTAGGGGAGATCTA+AGG | + | chr6.1:73414581-73414600 | MS.gene05434:intron | 35.0% | |
| GGAAAAAAAAGAAGTTGCTG+TGG | + | chr6.1:73414368-73414387 | MS.gene05434:CDS | 35.0% | |
| TAAGAACATACCTGATGTCT+AGG | + | chr6.1:73413808-73413827 | MS.gene05434:CDS | 35.0% | |
| TAGATGCACTTGCAATTTCT+GGG | + | chr6.1:73414013-73414032 | MS.gene05434:intron | 35.0% | |
| TCTCTATCTAGTCTCCTTAA+TGG | - | chr6.1:73413888-73413907 | None:intergenic | 35.0% | |
| TGCTGCTATACATTTAAAGG+AGG | + | chr6.1:73414067-73414086 | MS.gene05434:intron | 35.0% | |
| TGTAATGTGTGCTTGGAATA+TGG | + | chr6.1:73414321-73414340 | MS.gene05434:CDS | 35.0% | |
| TTAAGCTTGAGGCTTATGAA+TGG | + | chr6.1:73413637-73413656 | MS.gene05434:CDS | 35.0% | |
| TTTGTAGATGTGGTTTCATC+TGG | - | chr6.1:73414270-73414289 | None:intergenic | 35.0% | |
| ! | AAGGCATTACACCTATCAAT+GGG | + | chr6.1:73414151-73414170 | MS.gene05434:CDS | 35.0% |
| ! | TCTAGTCTCCTTAATGGTTT+TGG | - | chr6.1:73413882-73413901 | None:intergenic | 35.0% |
| !! | ATATGTCGGTTCACAAATGA+GGG | + | chr6.1:73413542-73413561 | MS.gene05434:CDS | 35.0% |
| !!! | GTTTTGAAGAAGAAAGTTCC+TGG | + | chr6.1:73414879-73414898 | MS.gene05434:CDS | 35.0% |
| !!! | TCTCTCCTCCTCAATTTTTT+TGG | - | chr6.1:73414246-73414265 | None:intergenic | 35.0% |
| !!! | TGTTTTGACTGTGTTTTGCA+GGG | + | chr6.1:73414852-73414871 | MS.gene05434:intron | 35.0% |
| !!! | TTTTTATGACTTGGTCCCTT+TGG | - | chr6.1:73414630-73414649 | None:intergenic | 35.0% |
| AACTCGTAGGAATACCATGT+AGG | + | chr6.1:73414036-73414055 | MS.gene05434:intron | 40.0% | |
| AAGAAAGTTCCTGGTAGGAT+GGG | + | chr6.1:73414888-73414907 | MS.gene05434:CDS | 40.0% | |
| ACCTCATAGCATTCTCTCTA+AGG | - | chr6.1:73413842-73413861 | None:intergenic | 40.0% | |
| AGATTGAGAAGAGTGGAAAC+TGG | + | chr6.1:73413907-73413926 | MS.gene05434:intron | 40.0% | |
| AGTCCACCTATTTGTAGATG+TGG | - | chr6.1:73414280-73414299 | None:intergenic | 40.0% | |
| CAACATATGCAGGCAACTTA+AGG | + | chr6.1:73413934-73413953 | MS.gene05434:intron | 40.0% | |
| CAATGCTAGGACATGTAAGA+AGG | + | chr6.1:73414347-73414366 | MS.gene05434:CDS | 40.0% | |
| CCTCATAGCATTCTCTCTAA+GGG | - | chr6.1:73413841-73413860 | None:intergenic | 40.0% | |
| CTGGTAGGCCAAAAAAATTG+AGG | + | chr6.1:73414235-73414254 | MS.gene05434:CDS | 40.0% | |
| GATAGAGAGATTGAGAAGAG+TGG | + | chr6.1:73413900-73413919 | MS.gene05434:intron | 40.0% | |
| GATGAAAGAGGTTAAGCTTG+AGG | + | chr6.1:73413626-73413645 | MS.gene05434:CDS | 40.0% | |
| GCTTACACCAACACTTTGTA+GGG | - | chr6.1:73413674-73413693 | None:intergenic | 40.0% | |
| GTAGGCCAAAAAAATTGAGG+AGG | + | chr6.1:73414238-73414257 | MS.gene05434:CDS | 40.0% | |
| TAGCTATCCCTACAAAGTGT+TGG | + | chr6.1:73413664-73413683 | MS.gene05434:CDS | 40.0% | |
| TATCATGATTGCTGCTGCAA+AGG | + | chr6.1:73413566-73413585 | MS.gene05434:CDS | 40.0% | |
| TGAAGAAGAAAGTTCCTGGT+AGG | + | chr6.1:73414883-73414902 | MS.gene05434:CDS | 40.0% | |
| TGCAAAGGCCACATATTATG+AGG | + | chr6.1:73413581-73413600 | MS.gene05434:CDS | 40.0% | |
| TGCTTACACCAACACTTTGT+AGG | - | chr6.1:73413675-73413694 | None:intergenic | 40.0% | |
| TGGAATATGGTCACAATGCT+AGG | + | chr6.1:73414334-73414353 | MS.gene05434:CDS | 40.0% | |
| TGTCCACTATTCTGATTGTG+AGG | - | chr6.1:73414429-73414448 | None:intergenic | 40.0% | |
| ! | CATCTACAAATAGGTGGACT+AGG | + | chr6.1:73414280-73414299 | MS.gene05434:CDS | 40.0% |
| !! | GAAGGCATTACACCTATCAA+TGG | + | chr6.1:73414150-73414169 | MS.gene05434:CDS | 40.0% |
| !! | GATATGTCGGTTCACAAATG+AGG | + | chr6.1:73413541-73413560 | MS.gene05434:CDS | 40.0% |
| !!! | CTCAATTTTTTTGGCCTACC+AGG | - | chr6.1:73414237-73414256 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACTGTGTTTTGC+AGG | + | chr6.1:73414851-73414870 | MS.gene05434:intron | 40.0% |
| AACTGGTGTGCAACATATGC+AGG | + | chr6.1:73413924-73413943 | MS.gene05434:intron | 45.0% | |
| AAGAAAGGGACACAAGGTGA+TGG | + | chr6.1:73414654-73414673 | MS.gene05434:CDS | 45.0% | |
| AGAAAGTTCCTGGTAGGATG+GGG | + | chr6.1:73414889-73414908 | MS.gene05434:CDS | 45.0% | |
| AGGCCACATATTATGAGGCA+TGG | + | chr6.1:73413586-73413605 | MS.gene05434:CDS | 45.0% | |
| ATCTAAGGGTCCTGCTATGA+AGG | + | chr6.1:73414596-73414615 | MS.gene05434:CDS | 45.0% | |
| ATTCTGCCACCTGCTTACAA+GGG | + | chr6.1:73414207-73414226 | MS.gene05434:CDS | 45.0% | |
| CACATGTTCTGCCCATTGAT+AGG | - | chr6.1:73414165-73414184 | None:intergenic | 45.0% | |
| CCCTTAGAGAGAATGCTATG+AGG | + | chr6.1:73413838-73413857 | MS.gene05434:CDS | 45.0% | |
| CTATCAATGGGCAGAACATG+TGG | + | chr6.1:73414163-73414182 | MS.gene05434:CDS | 45.0% | |
| CTATTCTGATTGTGAGGTGC+AGG | - | chr6.1:73414423-73414442 | None:intergenic | 45.0% | |
| CTCCCATGCCTCATAATATG+TGG | - | chr6.1:73413592-73413611 | None:intergenic | 45.0% | |
| GAAGAAAGTTCCTGGTAGGA+TGG | + | chr6.1:73414887-73414906 | MS.gene05434:CDS | 45.0% | |
| GCACCTCACAATCAGAATAG+TGG | + | chr6.1:73414423-73414442 | MS.gene05434:CDS | 45.0% | |
| GGCCACATATTATGAGGCAT+GGG | + | chr6.1:73413587-73413606 | MS.gene05434:CDS | 45.0% | |
| GTTTCAGCATCAACTTCAGC+AGG | - | chr6.1:73414702-73414721 | None:intergenic | 45.0% | |
| TAAGCAGGTGGCAGAATATC+AGG | - | chr6.1:73414204-73414223 | None:intergenic | 45.0% | |
| TAATTGATCCCCATCCTACC+AGG | - | chr6.1:73414900-73414919 | None:intergenic | 45.0% | |
| TATTCTGCCACCTGCTTACA+AGG | + | chr6.1:73414206-73414225 | MS.gene05434:CDS | 45.0% | |
| ! | TGCAATTTCTGGGAACTCGT+AGG | + | chr6.1:73414023-73414042 | MS.gene05434:intron | 45.0% |
| ATGAAGGCCGGCAAACCAAA+GGG | + | chr6.1:73414612-73414631 | MS.gene05434:CDS | 50.0% | |
| GGGTAGCAAACCTAGACATC+AGG | - | chr6.1:73413821-73413840 | None:intergenic | 50.0% | |
| TATGAAGGCCGGCAAACCAA+AGG | + | chr6.1:73414611-73414630 | MS.gene05434:CDS | 50.0% | |
| TGACTACGTGCTGCAACAGT+AGG | - | chr6.1:73414738-73414757 | None:intergenic | 50.0% | |
| !! | ACTTGGTCCCTTTGGTTTGC+CGG | - | chr6.1:73414622-73414641 | None:intergenic | 50.0% |
| !! | CTGCAGTGTTGGCAACACAA+GGG | + | chr6.1:73414454-73414473 | MS.gene05434:CDS | 50.0% |
| AAGGGTCCTGCTATGAAGGC+CGG | + | chr6.1:73414600-73414619 | MS.gene05434:CDS | 55.0% | |
| CTTACAAGGGTGGTCCTGGT+AGG | + | chr6.1:73414220-73414239 | MS.gene05434:CDS | 55.0% | |
| GCAGCAATCGCATGCCTACA+TGG | - | chr6.1:73414053-73414072 | None:intergenic | 55.0% | |
| GGTGCAGGCTCAGTTTGAAG+TGG | - | chr6.1:73414408-73414427 | None:intergenic | 55.0% | |
| TGGACAAGCTGCTGCAGTGT+TGG | + | chr6.1:73414443-73414462 | MS.gene05434:CDS | 55.0% | |
| !! | GCTGCAGTGTTGGCAACACA+AGG | + | chr6.1:73414453-73414472 | MS.gene05434:CDS | 55.0% |
| CCAGGACCACCCTTGTAAGC+AGG | - | chr6.1:73414219-73414238 | None:intergenic | 60.0% | |
| CCTGCTTACAAGGGTGGTCC+TGG | + | chr6.1:73414216-73414235 | MS.gene05434:CDS | 60.0% | |
| CTGCCACCTGCTTACAAGGG+TGG | + | chr6.1:73414210-73414229 | MS.gene05434:CDS | 60.0% | |
| GGACCACCCTTGTAAGCAGG+TGG | - | chr6.1:73414216-73414235 | None:intergenic | 60.0% | |
| GGTTTGCCGGCCTTCATAGC+AGG | - | chr6.1:73414609-73414628 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 73413501 | 73414920 | 73413501 | ID=MS.gene05434 |
| chr6.1 | mRNA | 73413501 | 73414920 | 73413501 | ID=MS.gene05434.t1;Parent=MS.gene05434 |
| chr6.1 | exon | 73413501 | 73413859 | 73413501 | ID=MS.gene05434.t1.exon1;Parent=MS.gene05434.t1 |
| chr6.1 | CDS | 73413501 | 73413859 | 73413501 | ID=cds.MS.gene05434.t1;Parent=MS.gene05434.t1 |
| chr6.1 | exon | 73414086 | 73414506 | 73414086 | ID=MS.gene05434.t1.exon2;Parent=MS.gene05434.t1 |
| chr6.1 | CDS | 73414086 | 73414506 | 73414086 | ID=cds.MS.gene05434.t1;Parent=MS.gene05434.t1 |
| chr6.1 | exon | 73414591 | 73414785 | 73414591 | ID=MS.gene05434.t1.exon3;Parent=MS.gene05434.t1 |
| chr6.1 | CDS | 73414591 | 73414785 | 73414591 | ID=cds.MS.gene05434.t1;Parent=MS.gene05434.t1 |
| chr6.1 | exon | 73414873 | 73414920 | 73414873 | ID=MS.gene05434.t1.exon4;Parent=MS.gene05434.t1 |
| chr6.1 | CDS | 73414873 | 73414920 | 73414873 | ID=cds.MS.gene05434.t1;Parent=MS.gene05434.t1 |
| Gene Sequence |
| Protein sequence |
