AlfalfaGEDB | MS.gene23945

M. sativa cultivar XinJiangDaYe / MS.gene23945

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23945.t1	XP_004486667.1	74.2	62	16	0	10	71	72	133	2.60E-15	90.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23945.t1	A0A392R5Q1	70.4	71	21	0	1	71	8	78	2.6e-17	97.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene23945	0.849095	4.03E-60	-1.69E-46
MS.gene049230	MS.gene23945	0.811188	7.93E-51	-1.69E-46
MS.gene049378	MS.gene23945	0.84629	2.38E-59	-1.69E-46
MS.gene04984	MS.gene23945	0.823444	1.38E-53	-1.69E-46
MS.gene050226	MS.gene23945	0.848287	6.75E-60	-1.69E-46
MS.gene050227	MS.gene23945	0.837928	3.89E-57	-1.69E-46
MS.gene050228	MS.gene23945	0.85024	1.93E-60	-1.69E-46
MS.gene050442	MS.gene23945	0.820756	5.80E-53	-1.69E-46
MS.gene050605	MS.gene23945	0.821723	3.47E-53	-1.69E-46
MS.gene050623	MS.gene23945	-0.81518	1.06E-51	-1.69E-46
MS.gene050680	MS.gene23945	0.800573	1.35E-48	-1.69E-46
MS.gene050719	MS.gene23945	0.815284	1.00E-51	-1.69E-46
MS.gene050721	MS.gene23945	0.813402	2.61E-51	-1.69E-46
MS.gene050724	MS.gene23945	0.814242	1.70E-51	-1.69E-46
MS.gene050750	MS.gene23945	0.80173	7.84E-49	-1.69E-46
MS.gene050780	MS.gene23945	0.827033	1.96E-54	-1.69E-46
MS.gene050826	MS.gene23945	0.834934	2.25E-56	-1.69E-46
MS.gene050953	MS.gene23945	0.810782	9.71E-51	-1.69E-46
MS.gene051198	MS.gene23945	0.808249	3.40E-50	-1.69E-46
MS.gene051210	MS.gene23945	0.818478	1.92E-52	-1.69E-46
MS.gene051368	MS.gene23945	0.804586	2.01E-49	-1.69E-46
MS.gene051370	MS.gene23945	0.810454	1.14E-50	-1.69E-46
MS.gene051452	MS.gene23945	0.807261	5.51E-50	-1.69E-46
MS.gene051983	MS.gene23945	0.805824	1.11E-49	-1.69E-46
MS.gene052012	MS.gene23945	0.801173	1.02E-48	-1.69E-46
MS.gene052426	MS.gene23945	0.829177	5.96E-55	-1.69E-46
MS.gene052464	MS.gene23945	0.807289	5.44E-50	-1.69E-46
MS.gene052674	MS.gene23945	0.801267	9.76E-49	-1.69E-46
MS.gene052677	MS.gene23945	0.808565	2.91E-50	-1.69E-46
MS.gene05288	MS.gene23945	0.808933	2.43E-50	-1.69E-46
MS.gene052896	MS.gene23945	0.801082	1.06E-48	-1.69E-46
MS.gene05289	MS.gene23945	0.806385	8.44E-50	-1.69E-46
MS.gene053166	MS.gene23945	0.803663	3.13E-49	-1.69E-46
MS.gene053216	MS.gene23945	0.815173	1.06E-51	-1.69E-46
MS.gene053584	MS.gene23945	0.81075	9.87E-51	-1.69E-46
MS.gene054083	MS.gene23945	0.801105	1.05E-48	-1.69E-46
MS.gene05414	MS.gene23945	0.815373	9.56E-52	-1.69E-46
MS.gene05415	MS.gene23945	0.808953	2.40E-50	-1.69E-46
MS.gene05417	MS.gene23945	0.818933	1.51E-52	-1.69E-46
MS.gene054236	MS.gene23945	0.81671	4.81E-52	-1.69E-46
MS.gene05434	MS.gene23945	0.817216	3.70E-52	-1.69E-46
MS.gene054379	MS.gene23945	0.81687	4.42E-52	-1.69E-46
MS.gene054405	MS.gene23945	0.801296	9.63E-49	-1.69E-46
MS.gene05468	MS.gene23945	0.813598	2.36E-51	-1.69E-46
MS.gene054930	MS.gene23945	0.853119	2.95E-61	-1.69E-46
MS.gene05510	MS.gene23945	0.837246	5.82E-57	-1.69E-46
MS.gene055222	MS.gene23945	0.809377	1.95E-50	-1.69E-46
MS.gene055701	MS.gene23945	0.853614	2.13E-61	-1.69E-46
MS.gene055926	MS.gene23945	0.820434	6.87E-53	-1.69E-46
MS.gene056480	MS.gene23945	0.812364	4.40E-51	-1.69E-46
MS.gene056506	MS.gene23945	0.814507	1.49E-51	-1.69E-46
MS.gene056873	MS.gene23945	0.802918	4.47E-49	-1.69E-46
MS.gene056979	MS.gene23945	0.802328	5.91E-49	-1.69E-46
MS.gene057194	MS.gene23945	0.848215	7.06E-60	-1.69E-46
MS.gene05761	MS.gene23945	0.844037	9.69E-59	-1.69E-46
MS.gene057750	MS.gene23945	0.813632	2.32E-51	-1.69E-46
MS.gene057754	MS.gene23945	0.801021	1.10E-48	-1.69E-46
MS.gene057869	MS.gene23945	0.817886	2.61E-52	-1.69E-46
MS.gene058146	MS.gene23945	0.857785	1.29E-62	-1.69E-46
MS.gene058595	MS.gene23945	0.82721	1.77E-54	-1.69E-46
MS.gene059124	MS.gene23945	0.804602	2.00E-49	-1.69E-46
MS.gene059128	MS.gene23945	0.843082	1.74E-58	-1.69E-46
MS.gene059161	MS.gene23945	0.826829	2.19E-54	-1.69E-46
MS.gene059283	MS.gene23945	0.802302	5.98E-49	-1.69E-46
MS.gene060011	MS.gene23945	0.852081	5.83E-61	-1.69E-46
MS.gene060310	MS.gene23945	0.829673	4.51E-55	-1.69E-46
MS.gene060322	MS.gene23945	0.830714	2.51E-55	-1.69E-46
MS.gene06052	MS.gene23945	0.816081	6.64E-52	-1.69E-46
MS.gene060683	MS.gene23945	0.850056	2.17E-60	-1.69E-46
MS.gene060685	MS.gene23945	0.844819	5.97E-59	-1.69E-46
MS.gene060802	MS.gene23945	0.844185	8.84E-59	-1.69E-46
MS.gene060803	MS.gene23945	0.818847	1.58E-52	-1.69E-46
MS.gene060998	MS.gene23945	0.860483	2.00E-63	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23945.t1	MTR_2g103750	91.935	62	5	0	10	71	74	135	2.43e-36	119
MS.gene23945.t1	MTR_4g010530	61.364	44	16	1	28	70	80	123	9.47e-12	56.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 8 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAAAGCCATTCTATTTGC+AGG	0.298881	2.1:+1886204	None:intergenic
ATAGAATGGCTTTGTATAAC+GGG	0.410953	2.1:-1886197	MS.gene23945:CDS
TGCGAAGGAAGTAAGAGAAA+AGG	0.427100	2.1:-1886313	MS.gene23945:CDS
GCGAAGGAAGTAAGAGAAAA+GGG	0.441362	2.1:-1886312	MS.gene23945:CDS
AATAGAATGGCTTTGTATAA+CGG	0.457196	2.1:-1886198	MS.gene23945:CDS
TAGATTTGAAGAAAGTGCGA+AGG	0.517830	2.1:-1886328	MS.gene23945:CDS
TGGAATTCCTGCAAATAGAA+TGG	0.533064	2.1:-1886211	MS.gene23945:CDS
AGTGAAACAACGAAAACTCG+TGG	0.634965	2.1:-1886231	MS.gene23945:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATAGAATGGCTTTGTATAA+CGG	-	chr2.1:1886323-1886342	MS.gene23945:CDS	25.0%
	TAGCAAAAAAAGAGAAACAG+AGG	-	chr2.1:1886237-1886256	MS.gene23945:CDS	30.0%
!!	ATAGAATGGCTTTGTATAAC+GGG	-	chr2.1:1886324-1886343	MS.gene23945:CDS	30.0%
!!	TTTGTATAACGGGATTTTGA+GGG	-	chr2.1:1886334-1886353	MS.gene23945:CDS	30.0%
	TACAAAGCCATTCTATTTGC+AGG	+	chr2.1:1886320-1886339	None:intergenic	35.0%
	TGGAATTCCTGCAAATAGAA+TGG	-	chr2.1:1886310-1886329	MS.gene23945:CDS	35.0%
!	TAGATTTGAAGAAAGTGCGA+AGG	-	chr2.1:1886193-1886212	MS.gene23945:CDS	35.0%
!!	CTTTGTATAACGGGATTTTG+AGG	-	chr2.1:1886333-1886352	MS.gene23945:CDS	35.0%
	AGTGAAACAACGAAAACTCG+TGG	-	chr2.1:1886290-1886309	MS.gene23945:CDS	40.0%
	GCGAAGGAAGTAAGAGAAAA+GGG	-	chr2.1:1886209-1886228	MS.gene23945:CDS	40.0%
	TGCGAAGGAAGTAAGAGAAA+AGG	-	chr2.1:1886208-1886227	MS.gene23945:CDS	40.0%
!!	TTTTGAGGGATCGTGTGCAC+AGG	-	chr2.1:1886348-1886367	MS.gene23945:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	1886164	1886379	1886164	ID=MS.gene23945
chr2.1	mRNA	1886164	1886379	1886164	ID=MS.gene23945.t1;Parent=MS.gene23945
chr2.1	exon	1886164	1886379	1886164	ID=MS.gene23945.t1.exon1;Parent=MS.gene23945.t1
chr2.1	CDS	1886164	1886379	1886164	ID=cds.MS.gene23945.t1;Parent=MS.gene23945.t1

Gene Sequence	>MS.gene23945 ATGAATACAAAGAAAAATAAAAAGAAAGTTAGATTTGAAGAAAGTGCGAAGGAAGTAAGAGAAAAGGGTGAGATAGCAAAAAAAGAGAAACAGAGGAAACGAAACAGAGTACATAGCAACTGCAGAAGTGAAACAACGAAAACTCGTGGAATTCCTGCAAATAGAATGGCTTTGTATAACGGGATTTTGAGGGATCGTGTGCACAGGATTGAGTGA
Protein sequence	>MS.gene23945.t1 MNTKKNKKKVRFEESAKEVREKGEIAKKEKQRKRNRVHSNCRSETTKTRGIPANRMALYNGILRDRVHRIE