Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43040.t1 | XP_003596817.1 | 94.7 | 374 | 18 | 2 | 1 | 373 | 17 | 389 | 1.80E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43040.t1 | Q9SQQ9 | 52.5 | 396 | 146 | 12 | 1 | 373 | 18 | 394 | 3.2e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43040.t1 | G7ITS9 | 94.7 | 374 | 18 | 2 | 1 | 373 | 17 | 389 | 1.3e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43040.t1 | TF | GARP-G2-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene43040 | 0.822229 | 2.65E-53 | -1.69E-46 |
| MS.gene049378 | MS.gene43040 | 0.843933 | 1.03E-58 | -1.69E-46 |
| MS.gene049404 | MS.gene43040 | 0.812249 | 4.66E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene43040 | 0.817949 | 2.53E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene43040 | 0.824594 | 7.42E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene43040 | 0.817575 | 3.07E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene43040 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene43040 | 0.838771 | 2.36E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene43040 | 0.832526 | 8.99E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene43040 | 0.844199 | 8.76E-59 | -1.69E-46 |
| MS.gene050442 | MS.gene43040 | 0.864339 | 1.31E-64 | -1.69E-46 |
| MS.gene050680 | MS.gene43040 | 0.830192 | 3.37E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene43040 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene050721 | MS.gene43040 | 0.800175 | 1.63E-48 | -1.69E-46 |
| MS.gene050724 | MS.gene43040 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene43040 | 0.821937 | 3.10E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene43040 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene43040 | 0.810438 | 1.15E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene43040 | 0.821224 | 4.52E-53 | -1.69E-46 |
| MS.gene050953 | MS.gene43040 | 0.814386 | 1.58E-51 | -1.69E-46 |
| MS.gene051210 | MS.gene43040 | 0.812234 | 4.70E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene43040 | 0.81912 | 1.37E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene43040 | 0.804704 | 1.90E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene43040 | 0.822043 | 2.92E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene43040 | 0.80433 | 2.28E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene43040 | 0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene43040 | 0.822827 | 1.92E-53 | -1.69E-46 |
| MS.gene05289 | MS.gene43040 | 0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene43040 | 0.835713 | 1.43E-56 | -1.69E-46 |
| MS.gene053184 | MS.gene43040 | 0.834533 | 2.84E-56 | -1.69E-46 |
| MS.gene053201 | MS.gene43040 | 0.816154 | 6.40E-52 | -1.69E-46 |
| MS.gene053584 | MS.gene43040 | 0.810261 | 1.26E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene43040 | 0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene43040 | 0.809931 | 1.48E-50 | -1.69E-46 |
| MS.gene05434 | MS.gene43040 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene054405 | MS.gene43040 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene43040 | 0.846626 | 1.93E-59 | -1.69E-46 |
| MS.gene054468 | MS.gene43040 | 0.832684 | 8.21E-56 | -1.69E-46 |
| MS.gene054472 | MS.gene43040 | 0.81552 | 8.87E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene43040 | 0.801744 | 7.79E-49 | -1.69E-46 |
| MS.gene054542 | MS.gene43040 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene43040 | 0.811432 | 7.02E-51 | -1.69E-46 |
| MS.gene054610 | MS.gene43040 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene43040 | 0.840132 | 1.05E-57 | -1.69E-46 |
| MS.gene05510 | MS.gene43040 | 0.83524 | 1.88E-56 | -1.69E-46 |
| MS.gene055356 | MS.gene43040 | 0.837323 | 5.56E-57 | -1.69E-46 |
| MS.gene055357 | MS.gene43040 | 0.830006 | 3.74E-55 | -1.69E-46 |
| MS.gene055358 | MS.gene43040 | 0.847396 | 1.19E-59 | -1.69E-46 |
| MS.gene055367 | MS.gene43040 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene43040 | 0.856771 | 2.57E-62 | -1.69E-46 |
| MS.gene055818 | MS.gene43040 | 0.819659 | 1.03E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene43040 | 0.814577 | 1.44E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene43040 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene43040 | 0.82152 | 3.87E-53 | -1.69E-46 |
| MS.gene057026 | MS.gene43040 | 0.820014 | 8.58E-53 | -1.69E-46 |
| MS.gene057194 | MS.gene43040 | 0.818762 | 1.65E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene43040 | 0.809988 | 1.44E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene43040 | 0.830713 | 2.51E-55 | -1.69E-46 |
| MS.gene057750 | MS.gene43040 | 0.831559 | 1.56E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene43040 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene058139 | MS.gene43040 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene058146 | MS.gene43040 | 0.833514 | 5.11E-56 | -1.69E-46 |
| MS.gene059124 | MS.gene43040 | 0.809487 | 1.85E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene43040 | 0.843479 | 1.37E-58 | -1.69E-46 |
| MS.gene059382 | MS.gene43040 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene43040 | 0.812831 | 3.48E-51 | -1.69E-46 |
| MS.gene059789 | MS.gene43040 | 0.813059 | 3.10E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene43040 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene43040 | -0.817413 | 3.34E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene43040 | 0.822238 | 2.64E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene43040 | 0.840396 | 8.92E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene43040 | 0.832087 | 1.15E-55 | -1.69E-46 |
| MS.gene060572 | MS.gene43040 | 0.801541 | 8.58E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene43040 | 0.871123 | 8.68E-67 | -1.69E-46 |
| MS.gene060685 | MS.gene43040 | 0.868946 | 4.47E-66 | -1.69E-46 |
| MS.gene060802 | MS.gene43040 | 0.816699 | 4.83E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene43040 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene060918 | MS.gene43040 | 0.800868 | 1.18E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene43040 | 0.851305 | 9.68E-61 | -1.69E-46 |
| MS.gene061040 | MS.gene43040 | -0.801026 | 1.09E-48 | -1.69E-46 |
| MS.gene061114 | MS.gene43040 | -0.814817 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43040.t1 | MTR_2g086450 | 98.663 | 374 | 3 | 2 | 1 | 373 | 17 | 389 | 0.0 | 750 |
| MS.gene43040.t1 | MTR_6g032990 | 49.502 | 402 | 113 | 12 | 22 | 373 | 35 | 396 | 6.76e-105 | 314 |
| MS.gene43040.t1 | MTR_5g041350 | 52.941 | 204 | 87 | 1 | 22 | 225 | 8 | 202 | 3.53e-67 | 216 |
| MS.gene43040.t1 | MTR_4g081710 | 53.623 | 207 | 82 | 4 | 22 | 225 | 10 | 205 | 2.23e-63 | 206 |
| MS.gene43040.t1 | MTR_6g444980 | 56.395 | 172 | 55 | 5 | 19 | 189 | 25 | 177 | 2.76e-53 | 181 |
| MS.gene43040.t1 | MTR_5g027440 | 50.802 | 187 | 81 | 4 | 22 | 208 | 18 | 193 | 7.80e-52 | 174 |
| MS.gene43040.t1 | MTR_6g444980 | 57.051 | 156 | 47 | 5 | 19 | 173 | 25 | 161 | 2.27e-47 | 164 |
| MS.gene43040.t1 | MTR_7g088070 | 43.655 | 197 | 84 | 3 | 28 | 221 | 49 | 221 | 2.76e-43 | 152 |
| MS.gene43040.t1 | MTR_7g088070 | 44.000 | 200 | 83 | 5 | 28 | 221 | 49 | 225 | 8.44e-43 | 150 |
| MS.gene43040.t1 | MTR_2g027800 | 40.079 | 252 | 123 | 9 | 11 | 245 | 19 | 259 | 6.58e-41 | 146 |
| MS.gene43040.t1 | MTR_2g027860 | 46.023 | 176 | 72 | 3 | 11 | 184 | 31 | 185 | 1.47e-40 | 146 |
| MS.gene43040.t1 | MTR_7g098250 | 45.251 | 179 | 72 | 4 | 5 | 178 | 233 | 390 | 1.88e-39 | 146 |
| MS.gene43040.t1 | MTR_2g027800 | 38.889 | 252 | 112 | 8 | 11 | 245 | 19 | 245 | 6.33e-39 | 141 |
| MS.gene43040.t1 | MTR_1g053835 | 43.850 | 187 | 73 | 5 | 11 | 188 | 236 | 399 | 7.89e-38 | 141 |
| MS.gene43040.t1 | MTR_1g090670 | 41.026 | 195 | 102 | 4 | 11 | 205 | 26 | 207 | 2.25e-37 | 137 |
| MS.gene43040.t1 | MTR_1g080330 | 43.293 | 164 | 72 | 2 | 15 | 178 | 161 | 303 | 1.17e-36 | 137 |
| MS.gene43040.t1 | MTR_7g093030 | 43.871 | 155 | 65 | 3 | 28 | 182 | 211 | 343 | 1.01e-34 | 132 |
| MS.gene43040.t1 | MTR_7g115530 | 43.590 | 156 | 66 | 3 | 29 | 184 | 218 | 351 | 4.25e-34 | 131 |
| MS.gene43040.t1 | MTR_1g080330 | 41.958 | 143 | 62 | 2 | 15 | 157 | 161 | 282 | 1.60e-28 | 112 |
| MS.gene43040.t1 | MTR_7g068600 | 43.506 | 154 | 63 | 5 | 25 | 175 | 9 | 141 | 9.34e-28 | 109 |
| MS.gene43040.t1 | MTR_7g115530 | 42.636 | 129 | 53 | 2 | 29 | 157 | 218 | 325 | 5.95e-26 | 106 |
| MS.gene43040.t1 | MTR_1g053800 | 38.372 | 172 | 84 | 6 | 17 | 188 | 165 | 314 | 3.33e-25 | 104 |
| MS.gene43040.t1 | MTR_5g041350 | 53.846 | 91 | 42 | 0 | 135 | 225 | 1 | 91 | 1.57e-24 | 100 |
| MS.gene43040.t1 | MTR_5g041350 | 51.546 | 97 | 47 | 0 | 129 | 225 | 17 | 113 | 2.59e-24 | 100 |
| MS.gene43040.t1 | MTR_7g115530 | 64.912 | 57 | 20 | 0 | 29 | 85 | 218 | 274 | 1.83e-21 | 94.0 |
| MS.gene43040.t1 | MTR_7g115530 | 64.912 | 57 | 20 | 0 | 29 | 85 | 218 | 274 | 7.92e-21 | 92.8 |
| MS.gene43040.t1 | MTR_7g093030 | 60.345 | 58 | 23 | 0 | 28 | 85 | 211 | 268 | 3.79e-20 | 90.1 |
| MS.gene43040.t1 | MTR_1g053830 | 52.381 | 63 | 30 | 0 | 25 | 87 | 14 | 76 | 7.25e-20 | 84.0 |
| MS.gene43040.t1 | MTR_7g115530 | 67.308 | 52 | 17 | 0 | 29 | 80 | 218 | 269 | 3.32e-19 | 87.0 |
| MS.gene43040.t1 | MTR_7g069660 | 62.500 | 56 | 21 | 0 | 30 | 85 | 72 | 127 | 1.78e-18 | 85.9 |
| MS.gene43040.t1 | MTR_7g115530 | 66.667 | 51 | 17 | 0 | 29 | 79 | 218 | 268 | 2.29e-18 | 84.7 |
| MS.gene43040.t1 | MTR_2g023580 | 64.151 | 53 | 19 | 0 | 30 | 82 | 56 | 108 | 7.79e-18 | 82.4 |
| MS.gene43040.t1 | MTR_2g084230 | 52.778 | 72 | 32 | 1 | 14 | 85 | 84 | 153 | 8.73e-17 | 81.3 |
| MS.gene43040.t1 | MTR_2g084230 | 52.778 | 72 | 32 | 1 | 14 | 85 | 84 | 153 | 9.82e-17 | 80.5 |
| MS.gene43040.t1 | MTR_8g086410 | 58.929 | 56 | 23 | 0 | 30 | 85 | 112 | 167 | 1.98e-16 | 80.5 |
| MS.gene43040.t1 | MTR_8g086410 | 58.929 | 56 | 23 | 0 | 30 | 85 | 110 | 165 | 1.98e-16 | 80.5 |
| MS.gene43040.t1 | MTR_1g112370 | 62.264 | 53 | 20 | 0 | 30 | 82 | 23 | 75 | 3.15e-16 | 79.3 |
| MS.gene43040.t1 | MTR_3g450310 | 50.794 | 63 | 28 | 1 | 29 | 91 | 19 | 78 | 3.31e-16 | 77.0 |
| MS.gene43040.t1 | MTR_0223s0040 | 60.377 | 53 | 21 | 0 | 30 | 82 | 19 | 71 | 5.08e-16 | 77.8 |
| MS.gene43040.t1 | MTR_6g071625 | 53.125 | 64 | 30 | 0 | 30 | 93 | 203 | 266 | 1.12e-15 | 77.8 |
| MS.gene43040.t1 | MTR_4g021790 | 52.174 | 69 | 31 | 2 | 16 | 83 | 154 | 221 | 1.36e-15 | 76.6 |
| MS.gene43040.t1 | MTR_2g016220 | 57.143 | 56 | 24 | 0 | 30 | 85 | 90 | 145 | 2.59e-15 | 77.0 |
| MS.gene43040.t1 | MTR_2g016220 | 57.143 | 56 | 24 | 0 | 30 | 85 | 90 | 145 | 2.64e-15 | 77.0 |
| MS.gene43040.t1 | MTR_5g029470 | 58.929 | 56 | 23 | 0 | 30 | 85 | 220 | 275 | 4.24e-15 | 76.6 |
| MS.gene43040.t1 | MTR_3g064840 | 58.929 | 56 | 23 | 0 | 30 | 85 | 275 | 330 | 6.10e-15 | 76.3 |
| MS.gene43040.t1 | MTR_8g086410 | 56.604 | 53 | 23 | 0 | 30 | 82 | 112 | 164 | 7.25e-15 | 75.9 |
| MS.gene43040.t1 | MTR_1g021520 | 44.318 | 88 | 42 | 2 | 30 | 110 | 127 | 214 | 1.45e-14 | 73.9 |
| MS.gene43040.t1 | MTR_8g066310 | 57.143 | 56 | 24 | 0 | 30 | 85 | 174 | 229 | 3.88e-14 | 73.2 |
| MS.gene43040.t1 | MTR_1g090670 | 34.483 | 145 | 82 | 4 | 61 | 205 | 1 | 132 | 4.56e-14 | 71.2 |
| MS.gene43040.t1 | MTR_2g034960 | 55.932 | 59 | 25 | 1 | 25 | 83 | 207 | 264 | 4.93e-14 | 73.9 |
| MS.gene43040.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 25 | 83 | 107 | 164 | 6.36e-14 | 73.6 |
| MS.gene43040.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 25 | 83 | 211 | 268 | 7.23e-14 | 73.6 |
| MS.gene43040.t1 | MTR_4g121020 | 55.932 | 59 | 25 | 1 | 25 | 83 | 211 | 268 | 7.37e-14 | 73.6 |
| MS.gene43040.t1 | MTR_4g021855 | 56.364 | 55 | 23 | 1 | 29 | 83 | 168 | 221 | 9.97e-14 | 71.6 |
| MS.gene43040.t1 | MTR_2g450070 | 54.237 | 59 | 26 | 1 | 25 | 83 | 209 | 266 | 1.04e-13 | 72.8 |
| MS.gene43040.t1 | MTR_2g450070 | 54.237 | 59 | 26 | 1 | 25 | 83 | 209 | 266 | 1.08e-13 | 72.8 |
| MS.gene43040.t1 | MTR_2g016220 | 58.000 | 50 | 21 | 0 | 30 | 79 | 90 | 139 | 1.23e-13 | 72.0 |
| MS.gene43040.t1 | MTR_7g093010 | 33.333 | 147 | 76 | 3 | 28 | 173 | 212 | 337 | 1.98e-13 | 71.2 |
| MS.gene43040.t1 | MTR_1g032570 | 52.542 | 59 | 27 | 1 | 25 | 83 | 127 | 184 | 2.74e-13 | 71.6 |
| MS.gene43040.t1 | MTR_1g032570 | 52.542 | 59 | 27 | 1 | 25 | 83 | 196 | 253 | 3.10e-13 | 71.2 |
| MS.gene43040.t1 | MTR_4g021760 | 55.556 | 54 | 23 | 1 | 29 | 82 | 169 | 221 | 4.34e-13 | 69.7 |
| MS.gene43040.t1 | MTR_4g064730 | 43.333 | 90 | 49 | 2 | 26 | 114 | 128 | 216 | 6.78e-13 | 69.3 |
| MS.gene43040.t1 | MTR_7g089010 | 58.182 | 55 | 22 | 1 | 29 | 83 | 91 | 144 | 9.40e-13 | 68.6 |
| MS.gene43040.t1 | MTR_4g113140 | 55.172 | 58 | 26 | 0 | 26 | 83 | 232 | 289 | 1.27e-12 | 68.9 |
| MS.gene43040.t1 | MTR_1g093080 | 56.364 | 55 | 24 | 0 | 29 | 83 | 211 | 265 | 1.40e-12 | 68.6 |
| MS.gene43040.t1 | MTR_4g021845 | 56.863 | 51 | 21 | 1 | 29 | 79 | 168 | 217 | 2.38e-12 | 66.2 |
| MS.gene43040.t1 | MTR_4g086835 | 53.448 | 58 | 27 | 0 | 26 | 83 | 271 | 328 | 5.01e-12 | 67.4 |
| MS.gene43040.t1 | MTR_1g013170 | 56.364 | 55 | 23 | 1 | 29 | 83 | 191 | 244 | 5.33e-12 | 67.4 |
| MS.gene43040.t1 | MTR_5g017980 | 44.737 | 76 | 42 | 0 | 29 | 104 | 193 | 268 | 7.92e-12 | 66.2 |
| MS.gene43040.t1 | MTR_4g078810 | 53.704 | 54 | 24 | 1 | 29 | 82 | 158 | 210 | 1.03e-11 | 66.2 |
| MS.gene43040.t1 | MTR_4g131600 | 50.847 | 59 | 28 | 1 | 25 | 83 | 197 | 254 | 1.05e-11 | 66.6 |
| MS.gene43040.t1 | MTR_8g079940 | 46.667 | 75 | 33 | 2 | 29 | 97 | 209 | 282 | 1.47e-11 | 66.2 |
| MS.gene43040.t1 | MTR_4g131570 | 53.333 | 60 | 27 | 1 | 25 | 84 | 199 | 257 | 1.55e-11 | 66.2 |
| MS.gene43040.t1 | MTR_2g090675 | 53.846 | 52 | 23 | 1 | 31 | 82 | 163 | 213 | 1.84e-11 | 65.5 |
| MS.gene43040.t1 | MTR_5g054300 | 38.947 | 95 | 49 | 2 | 12 | 106 | 186 | 271 | 2.81e-11 | 64.7 |
| MS.gene43040.t1 | MTR_7g026400 | 52.727 | 55 | 25 | 1 | 29 | 83 | 157 | 210 | 3.16e-11 | 65.1 |
| MS.gene43040.t1 | MTR_4g131580 | 53.333 | 60 | 27 | 1 | 25 | 84 | 196 | 254 | 4.34e-11 | 64.7 |
| MS.gene43040.t1 | MTR_3g106220 | 49.153 | 59 | 29 | 1 | 25 | 83 | 194 | 251 | 4.91e-11 | 64.7 |
| MS.gene43040.t1 | MTR_3g086100 | 49.153 | 59 | 29 | 1 | 25 | 83 | 124 | 181 | 4.99e-11 | 64.3 |
| MS.gene43040.t1 | MTR_3g086100 | 49.153 | 59 | 29 | 1 | 25 | 83 | 195 | 252 | 5.98e-11 | 64.3 |
| MS.gene43040.t1 | MTR_4g086835 | 53.448 | 58 | 26 | 1 | 26 | 83 | 271 | 327 | 7.54e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43040.t1 | AT3G04030 | 54.040 | 396 | 140 | 12 | 1 | 373 | 18 | 394 | 2.15e-122 | 359 |
| MS.gene43040.t1 | AT3G04030 | 53.535 | 396 | 141 | 13 | 1 | 373 | 18 | 393 | 5.61e-119 | 350 |
| MS.gene43040.t1 | AT5G18240 | 52.346 | 405 | 141 | 14 | 1 | 373 | 18 | 402 | 1.09e-118 | 350 |
| MS.gene43040.t1 | AT5G18240 | 52.346 | 405 | 141 | 14 | 1 | 373 | 18 | 402 | 1.09e-118 | 350 |
| MS.gene43040.t1 | AT5G18240 | 51.852 | 405 | 141 | 15 | 1 | 373 | 18 | 400 | 2.86e-115 | 341 |
| MS.gene43040.t1 | AT3G04030 | 52.525 | 396 | 140 | 13 | 1 | 373 | 18 | 388 | 4.89e-115 | 340 |
| MS.gene43040.t1 | AT5G18240 | 50.864 | 405 | 141 | 15 | 1 | 373 | 18 | 396 | 3.22e-111 | 330 |
| MS.gene43040.t1 | AT5G18240 | 50.864 | 405 | 141 | 15 | 1 | 373 | 18 | 396 | 3.22e-111 | 330 |
| MS.gene43040.t1 | AT3G04030 | 49.107 | 336 | 130 | 11 | 61 | 373 | 1 | 318 | 1.95e-83 | 257 |
| MS.gene43040.t1 | AT3G04030 | 47.321 | 336 | 130 | 12 | 61 | 373 | 1 | 312 | 3.42e-76 | 238 |
| MS.gene43040.t1 | AT5G18240 | 46.377 | 345 | 128 | 15 | 61 | 373 | 1 | 320 | 3.13e-72 | 228 |
| MS.gene43040.t1 | AT1G69580 | 53.333 | 210 | 91 | 2 | 15 | 222 | 20 | 224 | 3.76e-65 | 210 |
| MS.gene43040.t1 | AT1G69580 | 53.110 | 209 | 92 | 2 | 15 | 222 | 20 | 223 | 1.46e-64 | 209 |
| MS.gene43040.t1 | AT4G13640 | 47.244 | 254 | 111 | 6 | 19 | 258 | 27 | 271 | 1.83e-61 | 199 |
| MS.gene43040.t1 | AT3G24120 | 49.528 | 212 | 86 | 2 | 3 | 208 | 15 | 211 | 3.40e-60 | 196 |
| MS.gene43040.t1 | AT4G13640 | 46.693 | 257 | 111 | 7 | 19 | 258 | 27 | 274 | 2.15e-59 | 194 |
| MS.gene43040.t1 | AT3G24120 | 48.837 | 215 | 86 | 3 | 3 | 208 | 15 | 214 | 3.99e-58 | 191 |
| MS.gene43040.t1 | AT1G79430 | 54.706 | 170 | 59 | 3 | 19 | 188 | 24 | 175 | 1.08e-52 | 179 |
| MS.gene43040.t1 | AT5G45580 | 44.949 | 198 | 86 | 3 | 14 | 203 | 8 | 190 | 1.54e-47 | 163 |
| MS.gene43040.t1 | AT3G12730 | 50.595 | 168 | 64 | 4 | 18 | 182 | 12 | 163 | 3.51e-46 | 158 |
| MS.gene43040.t1 | AT5G45580 | 45.503 | 189 | 80 | 3 | 23 | 203 | 1 | 174 | 1.07e-45 | 157 |
| MS.gene43040.t1 | AT2G01060 | 47.024 | 168 | 66 | 4 | 28 | 192 | 14 | 161 | 2.60e-41 | 147 |
| MS.gene43040.t1 | AT5G29000 | 44.805 | 154 | 67 | 2 | 28 | 181 | 187 | 322 | 6.64e-37 | 137 |
| MS.gene43040.t1 | AT5G29000 | 44.805 | 154 | 67 | 2 | 28 | 181 | 187 | 322 | 6.64e-37 | 137 |
| MS.gene43040.t1 | AT5G29000 | 44.805 | 154 | 67 | 2 | 28 | 181 | 230 | 365 | 1.32e-36 | 137 |
| MS.gene43040.t1 | AT3G04450 | 44.586 | 157 | 69 | 2 | 25 | 181 | 194 | 332 | 4.01e-36 | 136 |
| MS.gene43040.t1 | AT3G04450 | 44.586 | 157 | 69 | 2 | 25 | 181 | 194 | 332 | 4.01e-36 | 136 |
| MS.gene43040.t1 | AT3G04450 | 44.586 | 157 | 69 | 2 | 25 | 181 | 234 | 372 | 6.44e-36 | 136 |
| MS.gene43040.t1 | AT4G28610 | 38.462 | 208 | 105 | 5 | 28 | 235 | 224 | 408 | 7.38e-36 | 135 |
| MS.gene43040.t1 | AT5G06800 | 45.455 | 154 | 65 | 2 | 29 | 181 | 192 | 327 | 8.65e-35 | 132 |
| MS.gene43040.t1 | AT3G13040 | 44.654 | 159 | 67 | 3 | 29 | 185 | 241 | 380 | 5.96e-34 | 130 |
| MS.gene43040.t1 | AT3G13040 | 44.654 | 159 | 67 | 3 | 29 | 185 | 241 | 380 | 5.96e-34 | 130 |
| MS.gene43040.t1 | AT3G13040 | 44.654 | 159 | 67 | 3 | 29 | 185 | 241 | 380 | 5.96e-34 | 130 |
| MS.gene43040.t1 | AT5G06800 | 44.444 | 153 | 63 | 2 | 29 | 181 | 192 | 322 | 2.69e-33 | 127 |
| MS.gene43040.t1 | AT2G20400 | 40.854 | 164 | 69 | 3 | 31 | 194 | 233 | 368 | 6.08e-31 | 122 |
| MS.gene43040.t1 | AT2G20400 | 40.854 | 164 | 70 | 4 | 31 | 194 | 233 | 369 | 8.60e-31 | 121 |
| MS.gene43040.t1 | AT1G79430 | 48.438 | 128 | 48 | 3 | 61 | 188 | 1 | 110 | 1.66e-26 | 107 |
| MS.gene43040.t1 | AT2G01060 | 43.939 | 132 | 51 | 4 | 64 | 192 | 1 | 112 | 1.23e-23 | 98.6 |
| MS.gene43040.t1 | AT3G12730 | 44.800 | 125 | 50 | 4 | 61 | 182 | 1 | 109 | 8.91e-22 | 92.0 |
| MS.gene43040.t1 | AT3G04450 | 60.656 | 61 | 24 | 0 | 25 | 85 | 234 | 294 | 3.88e-21 | 93.2 |
| MS.gene43040.t1 | AT5G29000 | 57.746 | 71 | 28 | 1 | 28 | 98 | 230 | 298 | 4.70e-21 | 92.8 |
| MS.gene43040.t1 | AT5G06800 | 61.017 | 59 | 23 | 0 | 29 | 87 | 192 | 250 | 8.05e-20 | 89.0 |
| MS.gene43040.t1 | AT2G06020 | 48.193 | 83 | 39 | 2 | 11 | 89 | 65 | 147 | 2.09e-18 | 85.1 |
| MS.gene43040.t1 | AT2G38300 | 55.072 | 69 | 30 | 1 | 30 | 98 | 55 | 122 | 5.36e-18 | 84.7 |
| MS.gene43040.t1 | AT2G42660 | 58.065 | 62 | 25 | 1 | 30 | 91 | 51 | 111 | 1.23e-17 | 82.0 |
| MS.gene43040.t1 | AT1G14600 | 60.714 | 56 | 22 | 0 | 30 | 85 | 24 | 79 | 4.59e-17 | 80.5 |
| MS.gene43040.t1 | AT4G04605 | 60.377 | 53 | 21 | 0 | 30 | 82 | 15 | 67 | 9.44e-17 | 79.0 |
| MS.gene43040.t1 | AT2G40260 | 58.929 | 56 | 23 | 0 | 30 | 85 | 83 | 138 | 1.19e-16 | 81.3 |
| MS.gene43040.t1 | AT2G02060 | 62.264 | 53 | 20 | 0 | 30 | 82 | 30 | 82 | 1.68e-16 | 79.0 |
| MS.gene43040.t1 | AT2G02060 | 62.264 | 53 | 20 | 0 | 30 | 82 | 30 | 82 | 1.68e-16 | 79.0 |
| MS.gene43040.t1 | AT5G42630 | 55.072 | 69 | 30 | 1 | 17 | 85 | 94 | 161 | 8.20e-16 | 76.3 |
| MS.gene43040.t1 | AT5G16560 | 58.929 | 56 | 23 | 0 | 30 | 85 | 220 | 275 | 1.40e-15 | 78.2 |
| MS.gene43040.t1 | AT4G04580 | 54.717 | 53 | 24 | 0 | 30 | 82 | 15 | 67 | 1.64e-15 | 73.9 |
| MS.gene43040.t1 | AT5G42630 | 55.072 | 69 | 30 | 1 | 17 | 85 | 94 | 161 | 2.03e-15 | 76.3 |
| MS.gene43040.t1 | AT1G32240 | 58.929 | 56 | 23 | 0 | 30 | 85 | 214 | 269 | 2.16e-15 | 77.0 |
| MS.gene43040.t1 | AT1G32240 | 58.929 | 56 | 23 | 0 | 30 | 85 | 214 | 269 | 2.31e-15 | 77.4 |
| MS.gene43040.t1 | AT4G17695 | 51.562 | 64 | 31 | 0 | 30 | 93 | 165 | 228 | 6.30e-15 | 75.5 |
| MS.gene43040.t1 | AT5G05090 | 58.182 | 55 | 22 | 1 | 29 | 83 | 81 | 134 | 2.69e-13 | 69.7 |
| MS.gene43040.t1 | AT5G59570 | 55.172 | 58 | 25 | 1 | 26 | 83 | 138 | 194 | 3.01e-13 | 70.1 |
| MS.gene43040.t1 | AT5G59570 | 55.172 | 58 | 25 | 1 | 26 | 83 | 138 | 194 | 3.01e-13 | 70.1 |
| MS.gene43040.t1 | AT2G40970 | 56.897 | 58 | 24 | 1 | 26 | 83 | 102 | 158 | 3.71e-13 | 68.9 |
| MS.gene43040.t1 | AT5G45580 | 34.074 | 135 | 66 | 3 | 77 | 203 | 16 | 135 | 4.23e-13 | 68.6 |
| MS.gene43040.t1 | AT3G10760 | 50.000 | 70 | 34 | 1 | 14 | 83 | 90 | 158 | 4.79e-13 | 69.7 |
| MS.gene43040.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 29 | 83 | 167 | 220 | 5.95e-13 | 70.5 |
| MS.gene43040.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 29 | 83 | 237 | 290 | 6.25e-13 | 70.5 |
| MS.gene43040.t1 | AT3G16857 | 54.545 | 55 | 24 | 1 | 29 | 83 | 237 | 290 | 6.43e-13 | 70.5 |
| MS.gene43040.t1 | AT3G46640 | 56.364 | 55 | 23 | 1 | 29 | 83 | 144 | 197 | 8.70e-13 | 68.9 |
| MS.gene43040.t1 | AT3G46640 | 56.364 | 55 | 23 | 1 | 29 | 83 | 144 | 197 | 1.00e-12 | 68.9 |
| MS.gene43040.t1 | AT3G46640 | 56.364 | 55 | 23 | 1 | 29 | 83 | 144 | 197 | 1.00e-12 | 68.9 |
| MS.gene43040.t1 | AT2G03500 | 56.364 | 55 | 24 | 0 | 29 | 83 | 233 | 287 | 1.28e-12 | 69.3 |
| MS.gene43040.t1 | AT2G01760 | 49.231 | 65 | 31 | 2 | 29 | 92 | 135 | 198 | 3.25e-12 | 67.4 |
| MS.gene43040.t1 | AT1G25550 | 56.364 | 55 | 24 | 0 | 29 | 83 | 209 | 263 | 3.34e-12 | 67.4 |
| MS.gene43040.t1 | AT5G58080 | 51.471 | 68 | 32 | 1 | 16 | 83 | 181 | 247 | 4.14e-12 | 68.2 |
| MS.gene43040.t1 | AT2G01760 | 49.231 | 65 | 31 | 2 | 29 | 92 | 200 | 263 | 4.87e-12 | 67.0 |
| MS.gene43040.t1 | AT2G01760 | 49.231 | 65 | 31 | 2 | 29 | 92 | 228 | 291 | 6.62e-12 | 67.0 |
| MS.gene43040.t1 | AT2G20570 | 55.769 | 52 | 22 | 1 | 31 | 82 | 155 | 205 | 2.03e-11 | 65.5 |
| MS.gene43040.t1 | AT2G20570 | 55.769 | 52 | 22 | 1 | 31 | 82 | 171 | 221 | 2.16e-11 | 65.5 |
| MS.gene43040.t1 | AT1G49560 | 44.048 | 84 | 44 | 1 | 29 | 109 | 192 | 275 | 2.88e-11 | 64.7 |
| MS.gene43040.t1 | AT5G44190 | 50.000 | 54 | 26 | 1 | 29 | 82 | 147 | 199 | 3.23e-11 | 64.7 |
| MS.gene43040.t1 | AT3G25790 | 38.202 | 89 | 55 | 0 | 34 | 122 | 201 | 289 | 3.23e-11 | 64.7 |
| MS.gene43040.t1 | AT5G44190 | 50.000 | 54 | 26 | 1 | 29 | 82 | 147 | 199 | 4.22e-11 | 64.3 |
| MS.gene43040.t1 | AT3G62670 | 48.438 | 64 | 29 | 1 | 25 | 84 | 207 | 270 | 4.68e-11 | 64.3 |
| MS.gene43040.t1 | AT1G68670 | 53.448 | 58 | 27 | 0 | 26 | 83 | 212 | 269 | 5.29e-11 | 63.9 |
Find 59 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTCAAAATGGAGGGTT+TGG | 0.270343 | 2.4:+13788321 | MS.gene43040:CDS |
| ACACTTGGTAGACAGAATTT+AGG | 0.292229 | 2.4:+13788114 | MS.gene43040:CDS |
| ATGCAAAACCTAGATTAAAA+TGG | 0.295286 | 2.4:+13787027 | MS.gene43040:CDS |
| AAAACAATGAAGTACTAAAA+TGG | 0.316678 | 2.4:+13788436 | MS.gene43040:CDS |
| GGAAATGGTTCTAGTGATTC+AGG | 0.325156 | 2.4:+13786987 | MS.gene43040:CDS |
| GTTGAGAATCATTCAGATAT+TGG | 0.332253 | 2.4:+13788558 | MS.gene43040:CDS |
| CAATAACAACCATGTGTTCA+TGG | 0.338392 | 2.4:+13788362 | MS.gene43040:CDS |
| GAACAAGAAATCATTCAAAA+TGG | 0.339387 | 2.4:+13788312 | MS.gene43040:CDS |
| ATGACTCTTTAAATGATATA+AGG | 0.363326 | 2.4:-13787271 | None:intergenic |
| TAGAACCATTTCCTGTTTGA+AGG | 0.369263 | 2.4:-13786977 | None:intergenic |
| GTAAACAACTTGATTTGAAT+AGG | 0.370306 | 2.4:+13788655 | MS.gene43040:CDS |
| ATGAAACTCATGGGAATTCC+AGG | 0.370323 | 2.4:+13787243 | MS.gene43040:CDS |
| ACAAAGGAACACTGCAAGAT+TGG | 0.379529 | 2.4:+13788590 | MS.gene43040:CDS |
| AGACAGAATTTAGGAATAGT+AGG | 0.380211 | 2.4:+13788123 | MS.gene43040:CDS |
| TCATTTAAAGAGTCATCTTC+AGG | 0.380557 | 2.4:+13787278 | MS.gene43040:CDS |
| ATGTTCCTTCAAACAGGAAA+TGG | 0.408546 | 2.4:+13786972 | MS.gene43040:CDS |
| TTTATTCATGTGAGTTCCAT+TGG | 0.431480 | 2.4:-13787602 | None:intergenic |
| CTTTCTCAAGCACTGATTGA+AGG | 0.431720 | 2.4:-13788083 | None:intergenic |
| TTGATTTGAATAGGTTCAGT+TGG | 0.449179 | 2.4:+13788664 | MS.gene43040:CDS |
| ATAAACCTTGCATGAAGATC+AGG | 0.452639 | 2.4:-13787053 | None:intergenic |
| CTGTCCATCGAGCCGTCGTT+TGG | 0.455742 | 2.4:-13788255 | None:intergenic |
| CTTTCCTTTCCATGAACACA+TGG | 0.455778 | 2.4:-13788371 | None:intergenic |
| CACATGAATAAATTAACGCT+TGG | 0.461850 | 2.4:+13787613 | MS.gene43040:CDS |
| ATCGAGCCGTCGTTTGGTTG+AGG | 0.465457 | 2.4:-13788249 | None:intergenic |
| AGGCACATGTTCCTTCAAAC+AGG | 0.475299 | 2.4:+13786966 | MS.gene43040:CDS |
| AATGAATTAGAAAGAAATCA+TGG | 0.479388 | 2.4:+13788513 | MS.gene43040:CDS |
| TACAAAGACACTTGCAGCTA+AGG | 0.482388 | 2.4:+13788040 | MS.gene43040:CDS |
| GGAAATTTGTCTATGAACAT+TGG | 0.485289 | 2.4:+13788534 | MS.gene43040:CDS |
| ATAGAAGCAGTTAATCAGTT+AGG | 0.490373 | 2.4:+13787074 | MS.gene43040:CDS |
| ATCGTCTGACCGATCACAAA+AGG | 0.496813 | 2.4:+13788290 | MS.gene43040:CDS |
| GACAGAATTTAGGAATAGTA+GGG | 0.543038 | 2.4:+13788124 | MS.gene43040:CDS |
| CAAGAAATCATTCAAAATGG+AGG | 0.547960 | 2.4:+13788315 | MS.gene43040:CDS |
| AAATGATATAAGGTAAGCCC+TGG | 0.549274 | 2.4:-13787261 | None:intergenic |
| AAGAAATCATTCAAAATGGA+GGG | 0.551325 | 2.4:+13788316 | MS.gene43040:CDS |
| TCAGAGATGAAGGAGTTACA+AGG | 0.555449 | 2.4:+13788219 | MS.gene43040:CDS |
| CAACAAGCAACTGAATTAGC+AGG | 0.559201 | 2.4:+13788396 | MS.gene43040:CDS |
| GGCGCTGCAAATGCAGATTG+AGG | 0.562019 | 2.4:+13787785 | MS.gene43040:CDS |
| TCAACCAAACGACGGCTCGA+TGG | 0.568429 | 2.4:+13788251 | MS.gene43040:CDS |
| AATTCATTATTATTTCCTAA+CGG | 0.568566 | 2.4:-13788498 | None:intergenic |
| ACAACCATGTGTTCATGGAA+AGG | 0.581829 | 2.4:+13788367 | MS.gene43040:CDS |
| GAGAGACTTTCTGAAACCAA+TGG | 0.583065 | 2.4:+13787586 | MS.gene43040:CDS |
| TTGTTGTTGTTATTAGTCTG+TGG | 0.584414 | 2.4:-13787637 | None:intergenic |
| AAAACAGTAATGAAACTCAT+GGG | 0.594613 | 2.4:+13787234 | MS.gene43040:CDS |
| AGGAACATGTGCCTCTCAGA+TGG | 0.596232 | 2.4:-13786957 | None:intergenic |
| AAGACTCAATGAACAACTTG+AGG | 0.597565 | 2.4:+13787815 | MS.gene43040:CDS |
| GAGAAAGCTCAAGAAACACT+TGG | 0.604326 | 2.4:+13788099 | MS.gene43040:CDS |
| CAGCTAAGGATAGAAGCTCA+AGG | 0.609742 | 2.4:+13788054 | MS.gene43040:CDS |
| AGATTAAGTAAGAATCTGCA+TGG | 0.609923 | 2.4:+13787413 | MS.gene43040:CDS |
| AGTCGTGGAGATAACAATGA+AGG | 0.610907 | 2.4:+13788621 | MS.gene43040:CDS |
| GGACACCTGATCTTCATGCA+AGG | 0.639163 | 2.4:+13787048 | MS.gene43040:CDS |
| GAAGCAGTTAATCAGTTAGG+CGG | 0.649355 | 2.4:+13787077 | MS.gene43040:CDS |
| AGATTGGATCTAAACAGTCG+TGG | 0.649789 | 2.4:+13788606 | MS.gene43040:CDS |
| TGAAACTCATGGGAATTCCA+GGG | 0.657200 | 2.4:+13787244 | MS.gene43040:CDS |
| TGTTGAATTCAGACACTGTG+AGG | 0.662262 | 2.4:-13788193 | None:intergenic |
| TAGAGATTTACACATAAGCG+AGG | 0.678252 | 2.4:+13787764 | MS.gene43040:intron |
| AGTTAATCAGTTAGGCGGAG+CGG | 0.682383 | 2.4:+13787082 | MS.gene43040:CDS |
| AGTACTAAAATGGTGTGTTG+AGG | 0.684708 | 2.4:+13788446 | MS.gene43040:CDS |
| GAATGTCAATACCATCTGAG+AGG | 0.692919 | 2.4:+13786946 | None:intergenic |
| ATATTGGTGAGTTTCAACAA+AGG | 0.741956 | 2.4:+13788574 | MS.gene43040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATTATTATTTCCTAA+CGG | - | chr2.4:13788501-13788520 | None:intergenic | 15.0% |
| !! | AATGAATTAGAAAGAAATCA+TGG | + | chr2.4:13788513-13788532 | MS.gene43040:CDS | 20.0% |
| !! | ATGACTCTTTAAATGATATA+AGG | - | chr2.4:13787274-13787293 | None:intergenic | 20.0% |
| !!! | AAAACAATGAAGTACTAAAA+TGG | + | chr2.4:13788436-13788455 | MS.gene43040:CDS | 20.0% |
| !!! | TTAGTACTTCATTGTTTTTA+AGG | - | chr2.4:13788434-13788453 | None:intergenic | 20.0% |
| !!! | TTCATGTAATCTTGTTTTAT+AGG | + | chr2.4:13787692-13787711 | MS.gene43040:intron | 20.0% |
| ! | AAAAACAGTAATGAAACTCA+TGG | + | chr2.4:13787233-13787252 | MS.gene43040:CDS | 25.0% |
| ! | AAAACAGTAATGAAACTCAT+GGG | + | chr2.4:13787234-13787253 | MS.gene43040:CDS | 25.0% |
| ! | AAGAAATCATTCAAAATGGA+GGG | + | chr2.4:13788316-13788335 | MS.gene43040:CDS | 25.0% |
| ! | ATGCAAAACCTAGATTAAAA+TGG | + | chr2.4:13787027-13787046 | MS.gene43040:CDS | 25.0% |
| ! | ATGTTAGATCTTAGTATCAT+TGG | + | chr2.4:13787912-13787931 | MS.gene43040:intron | 25.0% |
| ! | GAACAAGAAATCATTCAAAA+TGG | + | chr2.4:13788312-13788331 | MS.gene43040:CDS | 25.0% |
| !! | ACATGAAGAGTGTAATTAAA+AGG | - | chr2.4:13787679-13787698 | None:intergenic | 25.0% |
| !! | ATGAGTTTCATTACTGTTTT+TGG | - | chr2.4:13787234-13787253 | None:intergenic | 25.0% |
| !! | CATGAAGAGTGTAATTAAAA+GGG | - | chr2.4:13787678-13787697 | None:intergenic | 25.0% |
| !! | GTAAACAACTTGATTTGAAT+AGG | + | chr2.4:13788655-13788674 | MS.gene43040:CDS | 25.0% |
| !!! | TGTTTTTACCTTACTTTGTA+TGG | + | chr2.4:13787348-13787367 | MS.gene43040:intron | 25.0% |
| AAACCAATATTCAAAACCTG+TGG | + | chr2.4:13788013-13788032 | MS.gene43040:intron | 30.0% | |
| AGAAACAAAATTAACGCGTT+TGG | - | chr2.4:13787982-13788001 | None:intergenic | 30.0% | |
| AGACAGAATTTAGGAATAGT+AGG | + | chr2.4:13788123-13788142 | MS.gene43040:CDS | 30.0% | |
| AGATTAAGTAAGAATCTGCA+TGG | + | chr2.4:13787413-13787432 | MS.gene43040:CDS | 30.0% | |
| ATAGAAGCAGTTAATCAGTT+AGG | + | chr2.4:13787074-13787093 | MS.gene43040:CDS | 30.0% | |
| ATATTGGTGAGTTTCAACAA+AGG | + | chr2.4:13788574-13788593 | MS.gene43040:CDS | 30.0% | |
| ATGTGTAAATCTCTACCAAA+AGG | - | chr2.4:13787759-13787778 | None:intergenic | 30.0% | |
| CAAGAAATCATTCAAAATGG+AGG | + | chr2.4:13788315-13788334 | MS.gene43040:CDS | 30.0% | |
| CACATGAATAAATTAACGCT+TGG | + | chr2.4:13787613-13787632 | MS.gene43040:CDS | 30.0% | |
| GACAGAATTTAGGAATAGTA+GGG | + | chr2.4:13788124-13788143 | MS.gene43040:CDS | 30.0% | |
| GGAAATTTGTCTATGAACAT+TGG | + | chr2.4:13788534-13788553 | MS.gene43040:CDS | 30.0% | |
| GTCAGCATAAAATCTTAAAG+TGG | - | chr2.4:13787727-13787746 | None:intergenic | 30.0% | |
| GTTGAGAATCATTCAGATAT+TGG | + | chr2.4:13788558-13788577 | MS.gene43040:CDS | 30.0% | |
| TAATTGCACCATACAAAGTA+AGG | - | chr2.4:13787359-13787378 | None:intergenic | 30.0% | |
| TCATTTAAAGAGTCATCTTC+AGG | + | chr2.4:13787278-13787297 | MS.gene43040:CDS | 30.0% | |
| TCTTACTTAATCTGTACTTC+TGG | - | chr2.4:13787406-13787425 | None:intergenic | 30.0% | |
| TGTGTAAATCTCTACCAAAA+GGG | - | chr2.4:13787758-13787777 | None:intergenic | 30.0% | |
| TTTATTCATGTGAGTTCCAT+TGG | - | chr2.4:13787605-13787624 | None:intergenic | 30.0% | |
| ! | ATTACACGTTCATTCTCTTT+TGG | + | chr2.4:13787124-13787143 | MS.gene43040:intron | 30.0% |
| ! | TTCAACATTTTCAGAGATGA+AGG | + | chr2.4:13788209-13788228 | MS.gene43040:CDS | 30.0% |
| ! | TTGATTTGAATAGGTTCAGT+TGG | + | chr2.4:13788664-13788683 | MS.gene43040:CDS | 30.0% |
| ! | TTGTTGTTGTTATTAGTCTG+TGG | - | chr2.4:13787640-13787659 | None:intergenic | 30.0% |
| ! | TTTCTTGTTCCTTTTGTGAT+CGG | - | chr2.4:13788302-13788321 | None:intergenic | 30.0% |
| AAATGATATAAGGTAAGCCC+TGG | - | chr2.4:13787264-13787283 | None:intergenic | 35.0% | |
| AAGACTCAATGAACAACTTG+AGG | + | chr2.4:13787815-13787834 | MS.gene43040:CDS | 35.0% | |
| ACACTTGGTAGACAGAATTT+AGG | + | chr2.4:13788114-13788133 | MS.gene43040:CDS | 35.0% | |
| AGTACTAAAATGGTGTGTTG+AGG | + | chr2.4:13788446-13788465 | MS.gene43040:CDS | 35.0% | |
| ATAAACCTTGCATGAAGATC+AGG | - | chr2.4:13787056-13787075 | None:intergenic | 35.0% | |
| ATCATTCAAAATGGAGGGTT+TGG | + | chr2.4:13788321-13788340 | MS.gene43040:CDS | 35.0% | |
| ATGTTCCTTCAAACAGGAAA+TGG | + | chr2.4:13786972-13786991 | MS.gene43040:CDS | 35.0% | |
| CAATAACAACCATGTGTTCA+TGG | + | chr2.4:13788362-13788381 | MS.gene43040:CDS | 35.0% | |
| TAGAACCATTTCCTGTTTGA+AGG | - | chr2.4:13786980-13786999 | None:intergenic | 35.0% | |
| TAGAGATTTACACATAAGCG+AGG | + | chr2.4:13787764-13787783 | MS.gene43040:intron | 35.0% | |
| TTACCATCTTTCTATTGCAG+AGG | + | chr2.4:13787203-13787222 | MS.gene43040:intron | 35.0% | |
| ! | AGTAATTTTCTCACTCCGTT+AGG | + | chr2.4:13788483-13788502 | MS.gene43040:CDS | 35.0% |
| !! | ACGTTCATTCTCTTTTGGTT+TGG | + | chr2.4:13787129-13787148 | MS.gene43040:intron | 35.0% |
| !! | TCAGGTGTCCATTTTAATCT+AGG | - | chr2.4:13787038-13787057 | None:intergenic | 35.0% |
| ACAAAGGAACACTGCAAGAT+TGG | + | chr2.4:13788590-13788609 | MS.gene43040:CDS | 40.0% | |
| ACAACCATGTGTTCATGGAA+AGG | + | chr2.4:13788367-13788386 | MS.gene43040:CDS | 40.0% | |
| AGATTGGATCTAAACAGTCG+TGG | + | chr2.4:13788606-13788625 | MS.gene43040:CDS | 40.0% | |
| AGTCGTGGAGATAACAATGA+AGG | + | chr2.4:13788621-13788640 | MS.gene43040:CDS | 40.0% | |
| ATGAAACTCATGGGAATTCC+AGG | + | chr2.4:13787243-13787262 | MS.gene43040:CDS | 40.0% | |
| CAACAAGCAACTGAATTAGC+AGG | + | chr2.4:13788396-13788415 | MS.gene43040:CDS | 40.0% | |
| CAATATTCAAAACCTGTGGC+AGG | + | chr2.4:13788017-13788036 | MS.gene43040:intron | 40.0% | |
| CTTTCCTTTCCATGAACACA+TGG | - | chr2.4:13788374-13788393 | None:intergenic | 40.0% | |
| GAAGCAGTTAATCAGTTAGG+CGG | + | chr2.4:13787077-13787096 | MS.gene43040:CDS | 40.0% | |
| GAGAAAGCTCAAGAAACACT+TGG | + | chr2.4:13788099-13788118 | MS.gene43040:CDS | 40.0% | |
| TACAAAGACACTTGCAGCTA+AGG | + | chr2.4:13788040-13788059 | MS.gene43040:CDS | 40.0% | |
| TCAGAGATGAAGGAGTTACA+AGG | + | chr2.4:13788219-13788238 | MS.gene43040:CDS | 40.0% | |
| TCATCGAATCTCGAGTAACA+TGG | + | chr2.4:13787153-13787172 | MS.gene43040:intron | 40.0% | |
| TGAAACTCATGGGAATTCCA+GGG | + | chr2.4:13787244-13787263 | MS.gene43040:CDS | 40.0% | |
| TGTTGAATTCAGACACTGTG+AGG | - | chr2.4:13788196-13788215 | None:intergenic | 40.0% | |
| TTGCCTCTGCAATAGAAAGA+TGG | - | chr2.4:13787209-13787228 | None:intergenic | 40.0% | |
| ! | GAACAACTTGAGGTGAGTTT+TGG | + | chr2.4:13787825-13787844 | MS.gene43040:intron | 40.0% |
| ! | TTTTGTCCTCAACCAAACGA+CGG | + | chr2.4:13788243-13788262 | MS.gene43040:CDS | 40.0% |
| !! | CTTTCTCAAGCACTGATTGA+AGG | - | chr2.4:13788086-13788105 | None:intergenic | 40.0% |
| !! | GAGAGACTTTCTGAAACCAA+TGG | + | chr2.4:13787586-13787605 | MS.gene43040:CDS | 40.0% |
| !! | GCTGACTTTGATATCCCTTT+TGG | + | chr2.4:13787741-13787760 | MS.gene43040:intron | 40.0% |
| !! | GGAAATGGTTCTAGTGATTC+AGG | + | chr2.4:13786987-13787006 | MS.gene43040:CDS | 40.0% |
| !!! | CTGCCACAGGTTTTGAATAT+TGG | - | chr2.4:13788019-13788038 | None:intergenic | 40.0% |
| AGGCACATGTTCCTTCAAAC+AGG | + | chr2.4:13786966-13786985 | MS.gene43040:CDS | 45.0% | |
| AGTTAATCAGTTAGGCGGAG+CGG | + | chr2.4:13787082-13787101 | MS.gene43040:CDS | 45.0% | |
| ATCGTCTGACCGATCACAAA+AGG | + | chr2.4:13788290-13788309 | MS.gene43040:CDS | 45.0% | |
| CAGCTAAGGATAGAAGCTCA+AGG | + | chr2.4:13788054-13788073 | MS.gene43040:CDS | 45.0% | |
| AGGAACATGTGCCTCTCAGA+TGG | - | chr2.4:13786960-13786979 | None:intergenic | 50.0% | |
| AGTGTCTTTGTACCTGCCAC+AGG | - | chr2.4:13788032-13788051 | None:intergenic | 50.0% | |
| CGCGTTTGGATTCTCTGCAA+CGG | - | chr2.4:13787968-13787987 | None:intergenic | 50.0% | |
| GGACACCTGATCTTCATGCA+AGG | + | chr2.4:13787048-13787067 | MS.gene43040:CDS | 50.0% | |
| ATCGAGCCGTCGTTTGGTTG+AGG | - | chr2.4:13788252-13788271 | None:intergenic | 55.0% | |
| GGCGCTGCAAATGCAGATTG+AGG | + | chr2.4:13787785-13787804 | MS.gene43040:CDS | 55.0% | |
| TCAACCAAACGACGGCTCGA+TGG | + | chr2.4:13788251-13788270 | MS.gene43040:CDS | 55.0% | |
| TCTCTGCAACGGCTGCAGAA+CGG | - | chr2.4:13787957-13787976 | None:intergenic | 55.0% | |
| CTGTCCATCGAGCCGTCGTT+TGG | - | chr2.4:13788258-13788277 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 13786948 | 13788692 | 13786948 | ID=MS.gene43040 |
| chr2.4 | mRNA | 13786948 | 13788692 | 13786948 | ID=MS.gene43040.t1;Parent=MS.gene43040 |
| chr2.4 | exon | 13786948 | 13787107 | 13786948 | ID=MS.gene43040.t1.exon1;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13786948 | 13787107 | 13786948 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| chr2.4 | exon | 13787223 | 13787299 | 13787223 | ID=MS.gene43040.t1.exon2;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13787223 | 13787299 | 13787223 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| chr2.4 | exon | 13787407 | 13787467 | 13787407 | ID=MS.gene43040.t1.exon3;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13787407 | 13787467 | 13787407 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| chr2.4 | exon | 13787560 | 13787659 | 13787560 | ID=MS.gene43040.t1.exon4;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13787560 | 13787659 | 13787560 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| chr2.4 | exon | 13787767 | 13787836 | 13787767 | ID=MS.gene43040.t1.exon5;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13787767 | 13787836 | 13787767 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| chr2.4 | exon | 13788039 | 13788692 | 13788039 | ID=MS.gene43040.t1.exon6;Parent=MS.gene43040.t1 |
| chr2.4 | CDS | 13788039 | 13788692 | 13788039 | ID=cds.MS.gene43040.t1;Parent=MS.gene43040.t1 |
| Gene Sequence |
| Protein sequence |
