Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73227.t1 | XP_013454941.1 | 98 | 255 | 5 | 0 | 1 | 255 | 1 | 255 | 6.20E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73227.t1 | Q93YV9 | 32.1 | 109 | 70 | 2 | 134 | 242 | 107 | 211 | 3.7e-12 | 73.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73227.t1 | A0A072UGV8 | 98.0 | 255 | 5 | 0 | 1 | 255 | 1 | 255 | 4.5e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene73227 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene049151 | MS.gene73227 | 0.806566 | 7.73E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene73227 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene049230 | MS.gene73227 | 0.814595 | 1.42E-51 | -1.69E-46 |
| MS.gene049260 | MS.gene73227 | 0.807709 | 4.43E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene73227 | 0.861249 | 1.17E-63 | -1.69E-46 |
| MS.gene049378 | MS.gene73227 | 0.871899 | 4.81E-67 | -1.69E-46 |
| MS.gene049382 | MS.gene73227 | 0.811144 | 8.11E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene73227 | 0.854994 | 8.49E-62 | -1.69E-46 |
| MS.gene04984 | MS.gene73227 | 0.805936 | 1.05E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene73227 | 0.836534 | 8.84E-57 | -1.69E-46 |
| MS.gene049915 | MS.gene73227 | 0.834535 | 2.83E-56 | -1.69E-46 |
| MS.gene050226 | MS.gene73227 | 0.878571 | 2.52E-69 | -1.69E-46 |
| MS.gene050227 | MS.gene73227 | 0.888815 | 4.23E-73 | -1.69E-46 |
| MS.gene050228 | MS.gene73227 | 0.880033 | 7.66E-70 | -1.69E-46 |
| MS.gene050301 | MS.gene73227 | 0.814215 | 1.73E-51 | -1.69E-46 |
| MS.gene050303 | MS.gene73227 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene050319 | MS.gene73227 | -0.826979 | 2.01E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene73227 | -0.877023 | 8.76E-69 | -1.69E-46 |
| MS.gene050438 | MS.gene73227 | 0.803261 | 3.79E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene73227 | 0.814941 | 1.19E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene73227 | 0.844817 | 5.98E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene73227 | -0.873335 | 1.59E-67 | -1.69E-46 |
| MS.gene050642 | MS.gene73227 | 0.863821 | 1.89E-64 | -1.69E-46 |
| MS.gene050719 | MS.gene73227 | 0.847877 | 8.75E-60 | -1.69E-46 |
| MS.gene050721 | MS.gene73227 | 0.849437 | 3.24E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene73227 | 0.843025 | 1.81E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene73227 | 0.805673 | 1.19E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene73227 | 0.813525 | 2.45E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene73227 | 0.815396 | 9.45E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene73227 | 0.819276 | 1.26E-52 | -1.69E-46 |
| MS.gene050824 | MS.gene73227 | 0.829508 | 4.95E-55 | -1.69E-46 |
| MS.gene050987 | MS.gene73227 | 0.815079 | 1.11E-51 | -1.69E-46 |
| MS.gene05119 | MS.gene73227 | -0.8393 | 1.72E-57 | -1.69E-46 |
| MS.gene051257 | MS.gene73227 | 0.80685 | 6.73E-50 | -1.69E-46 |
| MS.gene051349 | MS.gene73227 | 0.840835 | 6.84E-58 | -1.69E-46 |
| MS.gene051535 | MS.gene73227 | 0.821536 | 3.83E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene73227 | 0.835179 | 1.95E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene73227 | 0.830213 | 3.33E-55 | -1.69E-46 |
| MS.gene051860 | MS.gene73227 | 0.834888 | 2.31E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene73227 | 0.864809 | 9.31E-65 | -1.69E-46 |
| MS.gene052077 | MS.gene73227 | 0.827286 | 1.70E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene73227 | 0.867742 | 1.09E-65 | -1.69E-46 |
| MS.gene052286 | MS.gene73227 | 0.812755 | 3.61E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene73227 | 0.854731 | 1.01E-61 | -1.69E-46 |
| MS.gene052309 | MS.gene73227 | -0.862725 | 4.13E-64 | -1.69E-46 |
| MS.gene052340 | MS.gene73227 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene73227 | 0.864377 | 1.27E-64 | -1.69E-46 |
| MS.gene052389 | MS.gene73227 | 0.812383 | 4.36E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene73227 | 0.815224 | 1.03E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene73227 | 0.816755 | 4.70E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene73227 | 0.826849 | 2.16E-54 | -1.69E-46 |
| MS.gene052858 | MS.gene73227 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene052860 | MS.gene73227 | 0.827044 | 1.94E-54 | -1.69E-46 |
| MS.gene053085 | MS.gene73227 | 0.811973 | 5.36E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene73227 | 0.820561 | 6.43E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene73227 | 0.893636 | 5.23E-75 | -1.69E-46 |
| MS.gene054083 | MS.gene73227 | 0.817223 | 3.69E-52 | -1.69E-46 |
| MS.gene054185 | MS.gene73227 | 0.801063 | 1.07E-48 | -1.69E-46 |
| MS.gene05434 | MS.gene73227 | 0.812939 | 3.29E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene73227 | 0.836217 | 1.07E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene73227 | 0.834879 | 2.32E-56 | -1.69E-46 |
| MS.gene054542 | MS.gene73227 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene054667 | MS.gene73227 | 0.825821 | 3.80E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene73227 | 0.899648 | 1.61E-77 | -1.69E-46 |
| MS.gene054942 | MS.gene73227 | 0.856321 | 3.48E-62 | -1.69E-46 |
| MS.gene054983 | MS.gene73227 | 0.856917 | 2.33E-62 | -1.69E-46 |
| MS.gene05510 | MS.gene73227 | 0.802587 | 5.23E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene73227 | 0.836562 | 8.70E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene73227 | 0.835485 | 1.63E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene73227 | 0.822495 | 2.30E-53 | -1.69E-46 |
| MS.gene055712 | MS.gene73227 | 0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene73227 | -0.836327 | 9.99E-57 | -1.69E-46 |
| MS.gene056506 | MS.gene73227 | 0.815409 | 9.38E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene73227 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene73227 | 0.841393 | 4.88E-58 | -1.69E-46 |
| MS.gene056979 | MS.gene73227 | 0.874883 | 4.77E-68 | -1.69E-46 |
| MS.gene05702 | MS.gene73227 | 0.805869 | 1.08E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene73227 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene057245 | MS.gene73227 | 0.828302 | 9.69E-55 | -1.69E-46 |
| MS.gene057260 | MS.gene73227 | 0.813812 | 2.12E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene73227 | 0.813263 | 2.80E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene73227 | 0.820617 | 6.24E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene73227 | 0.832619 | 8.53E-56 | -1.69E-46 |
| MS.gene057754 | MS.gene73227 | 0.838766 | 2.37E-57 | -1.69E-46 |
| MS.gene05795 | MS.gene73227 | 0.813263 | 2.80E-51 | -1.69E-46 |
| MS.gene057967 | MS.gene73227 | 0.820255 | 7.56E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene73227 | 0.823865 | 1.10E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene73227 | 0.81198 | 5.34E-51 | -1.69E-46 |
| MS.gene058139 | MS.gene73227 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene73227 | 0.849711 | 2.71E-60 | -1.69E-46 |
| MS.gene058182 | MS.gene73227 | 0.850089 | 2.13E-60 | -1.69E-46 |
| MS.gene058399 | MS.gene73227 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene058435 | MS.gene73227 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene058661 | MS.gene73227 | -0.817335 | 3.48E-52 | -1.69E-46 |
| MS.gene058710 | MS.gene73227 | 0.815476 | 9.06E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene73227 | 0.85923 | 4.77E-63 | -1.69E-46 |
| MS.gene058833 | MS.gene73227 | 0.821388 | 4.15E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene73227 | 0.818946 | 1.50E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene73227 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene73227 | 0.804592 | 2.01E-49 | -1.69E-46 |
| MS.gene059124 | MS.gene73227 | 0.806169 | 9.37E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene73227 | 0.845118 | 4.96E-59 | -1.69E-46 |
| MS.gene059247 | MS.gene73227 | 0.810738 | 9.93E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene73227 | 0.838773 | 2.36E-57 | -1.69E-46 |
| MS.gene059518 | MS.gene73227 | 0.811017 | 8.64E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene73227 | 0.84873 | 5.09E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene73227 | 0.846449 | 2.16E-59 | -1.69E-46 |
| MS.gene059899 | MS.gene73227 | 0.839675 | 1.37E-57 | -1.69E-46 |
| MS.gene060084 | MS.gene73227 | 0.811274 | 7.60E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene73227 | 0.836109 | 1.13E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene73227 | 0.807003 | 6.25E-50 | -1.69E-46 |
| MS.gene060404 | MS.gene73227 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene060476 | MS.gene73227 | 0.822364 | 2.47E-53 | -1.69E-46 |
| MS.gene060480 | MS.gene73227 | 0.83515 | 1.98E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene73227 | 0.819781 | 9.70E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene73227 | 0.815164 | 1.06E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene73227 | 0.815626 | 8.39E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene73227 | 0.821361 | 4.21E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene73227 | 0.824069 | 9.86E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene73227 | -0.831569 | 1.55E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene73227 | 0.843064 | 1.76E-58 | -1.69E-46 |
| MS.gene061113 | MS.gene73227 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene73227 | -0.812469 | 4.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73227.t1 | MTR_4g019910 | 98.039 | 255 | 5 | 0 | 1 | 255 | 1 | 255 | 0.0 | 527 |
| MS.gene73227.t1 | MTR_8g099610 | 25.610 | 246 | 152 | 6 | 5 | 250 | 57 | 271 | 3.31e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73227.t1 | AT3G09250 | 61.140 | 193 | 69 | 3 | 67 | 254 | 39 | 230 | 8.39e-85 | 253 |
| MS.gene73227.t1 | AT3G09250 | 61.140 | 193 | 69 | 3 | 67 | 254 | 53 | 244 | 1.36e-84 | 253 |
| MS.gene73227.t1 | AT3G09250 | 59.341 | 182 | 68 | 3 | 67 | 243 | 39 | 219 | 2.76e-75 | 229 |
| MS.gene73227.t1 | AT4G10925 | 26.596 | 188 | 115 | 5 | 63 | 250 | 55 | 219 | 3.82e-17 | 78.2 |
| MS.gene73227.t1 | AT4G10925 | 26.596 | 188 | 115 | 5 | 63 | 250 | 55 | 219 | 3.82e-17 | 78.2 |
| MS.gene73227.t1 | AT4G10925 | 26.596 | 188 | 115 | 5 | 63 | 250 | 55 | 219 | 3.82e-17 | 78.2 |
| MS.gene73227.t1 | AT4G10925 | 26.596 | 188 | 115 | 5 | 63 | 250 | 55 | 219 | 3.82e-17 | 78.2 |
| MS.gene73227.t1 | AT4G10925 | 26.596 | 188 | 115 | 5 | 63 | 250 | 55 | 219 | 3.82e-17 | 78.2 |
| MS.gene73227.t1 | AT4G23960 | 29.839 | 124 | 76 | 3 | 135 | 255 | 73 | 188 | 5.98e-12 | 63.2 |
Find 44 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTAACTTATTTGGATTAA+AGG | 0.134555 | 4.1:-78319979 | None:intergenic |
| TTGCCAAAAGCTAACTTATT+TGG | 0.143563 | 4.1:-78319987 | None:intergenic |
| ATGCTAAAGCAGCAGAAATA+AGG | 0.234285 | 4.1:+78320610 | MS.gene73227:CDS |
| GATAGCAACACAGCAGTATT+TGG | 0.251611 | 4.1:+78320657 | MS.gene73227:CDS |
| AATCCAAATAAGTTAGCTTT+TGG | 0.283724 | 4.1:+78319984 | MS.gene73227:CDS |
| CAAGGAGTTCAGTTTCTTGC+CGG | 0.285437 | 4.1:+78319908 | MS.gene73227:CDS |
| ATTAGATGAAAACACTTTAG+AGG | 0.343894 | 4.1:+78320554 | MS.gene73227:CDS |
| TCTTCTAGTTTGATTTGTAA+TGG | 0.367473 | 4.1:-78320849 | None:intergenic |
| TTGAGAGCTGGGATTTCGTA+TGG | 0.419032 | 4.1:+78320811 | MS.gene73227:CDS |
| TGCTAAAGCAGCAGAAATAA+GGG | 0.421596 | 4.1:+78320611 | MS.gene73227:CDS |
| TGCAACTTGAGGCATTGATT+AGG | 0.431017 | 4.1:-78320044 | None:intergenic |
| CCGGATATTCCTTTCATACC+AGG | 0.479450 | 4.1:-78320774 | None:intergenic |
| ATCTTCTCATTTGCAACTTG+AGG | 0.480992 | 4.1:-78320055 | None:intergenic |
| ATGTATCAATTCATATCTAC+TGG | 0.481405 | 4.1:-78321020 | None:intergenic |
| CCTGGTATGAAAGGAATATC+CGG | 0.485068 | 4.1:+78320774 | MS.gene73227:CDS |
| CTCAATAACATCATCATAGC+CGG | 0.487596 | 4.1:-78320793 | None:intergenic |
| GGCGACCTTGCAGCCATGCA+AGG | 0.495354 | 4.1:+78320714 | MS.gene73227:CDS |
| ATGATGATGTTATTGAGAGC+TGG | 0.502409 | 4.1:+78320799 | MS.gene73227:CDS |
| AAGGAGTTCAGTTTCTTGCC+GGG | 0.510954 | 4.1:+78319909 | MS.gene73227:CDS |
| ACATGCCTTGCATGGCTGCA+AGG | 0.515179 | 4.1:-78320719 | None:intergenic |
| GTTTCTGTCAGGGACACGAC+AGG | 0.525904 | 4.1:+78320482 | MS.gene73227:intron |
| AGTTCATGCTAGAGGGGACA+TGG | 0.526900 | 4.1:+78320878 | MS.gene73227:CDS |
| GACATTAAAGTTCATGCTAG+AGG | 0.527041 | 4.1:+78320870 | MS.gene73227:CDS |
| GGGACTTTCTTCTACTCTCA+AGG | 0.531322 | 4.1:+78319890 | MS.gene73227:intron |
| TTGCAGCCATGCAAGGCATG+TGG | 0.533455 | 4.1:+78320721 | MS.gene73227:CDS |
| TGATGATGTTATTGAGAGCT+GGG | 0.533980 | 4.1:+78320800 | MS.gene73227:CDS |
| AATGTGTTTGAGAGGATCAA+TGG | 0.541541 | 4.1:+78320966 | MS.gene73227:CDS |
| TTGTAACGAATGTGTTTGAG+AGG | 0.556422 | 4.1:+78320958 | MS.gene73227:CDS |
| ACATTAAAGTTCATGCTAGA+GGG | 0.562565 | 4.1:+78320871 | MS.gene73227:CDS |
| TGCAGCCATGCAAGGCATGT+GGG | 0.568080 | 4.1:+78320722 | MS.gene73227:CDS |
| TGAGAGCTGGGATTTCGTAT+GGG | 0.571314 | 4.1:+78320812 | MS.gene73227:CDS |
| GAGGTATGTTGTGTTCATCC+TGG | 0.582448 | 4.1:+78320756 | MS.gene73227:CDS |
| CATGGGGTATGTTACATGCA+TGG | 0.595261 | 4.1:+78320896 | MS.gene73227:CDS |
| GTTCATGCTAGAGGGGACAT+GGG | 0.595900 | 4.1:+78320879 | MS.gene73227:CDS |
| AAGCTATTGATGACTGAACC+CGG | 0.607031 | 4.1:-78319927 | None:intergenic |
| TTTCTGTCAGGGACACGACA+GGG | 0.615152 | 4.1:+78320483 | MS.gene73227:intron |
| CATTAAAGTTCATGCTAGAG+GGG | 0.624713 | 4.1:+78320872 | MS.gene73227:CDS |
| TGTGTTCATCCTGGTATGAA+AGG | 0.628945 | 4.1:+78320765 | MS.gene73227:CDS |
| ACGAAAGGAGGAAGATGGGG+AGG | 0.630749 | 4.1:+78320930 | MS.gene73227:CDS |
| TTGAGAGGATCAATGGCGAG+TGG | 0.635056 | 4.1:+78320973 | MS.gene73227:CDS |
| AAAACGAAAGGAGGAAGATG+GGG | 0.635971 | 4.1:+78320927 | MS.gene73227:CDS |
| TTCATGCTAGAGGGGACATG+GGG | 0.652035 | 4.1:+78320880 | MS.gene73227:CDS |
| GCTACAGCATGCAATTGCTG+AGG | 0.668140 | 4.1:+78320581 | MS.gene73227:CDS |
| GGAGAGCATGTTGAGCAGTG+AGG | 0.712787 | 4.1:+78320524 | MS.gene73227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTCTTTTAAGTTTTAA+GGG | + | chr4.1:78319526-78319545 | MS.gene73227:intron | 15.0% |
| !! | TAACTTTATAAAATTGCCAT+TGG | + | chr4.1:78320460-78320479 | MS.gene73227:intron | 20.0% |
| !! | TACATAGAATTTCAATTGAA+TGG | + | chr4.1:78319699-78319718 | MS.gene73227:intron | 20.0% |
| !!! | AATTTTGTGTTTTTTCATGA+AGG | + | chr4.1:78319869-78319888 | MS.gene73227:intron | 20.0% |
| !!! | ATAAGTTTAATTCTGAAACA+AGG | - | chr4.1:78319486-78319505 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTTTTTTCATGAA+GGG | + | chr4.1:78319870-78319889 | MS.gene73227:intron | 20.0% |
| !!! | GAATTCTCTTTTAAGTTTTA+AGG | + | chr4.1:78319525-78319544 | MS.gene73227:intron | 20.0% |
| !!! | TAAGTTTAATTCTGAAACAA+GGG | - | chr4.1:78319485-78319504 | None:intergenic | 20.0% |
| !!! | TTTGATTTAACTACTTGAAA+TGG | + | chr4.1:78319630-78319649 | MS.gene73227:intron | 20.0% |
| ! | AAACTACATAATCCTTGAAA+AGG | - | chr4.1:78319812-78319831 | None:intergenic | 25.0% |
| ! | AACTACTTGAAATGGAAATT+TGG | + | chr4.1:78319638-78319657 | MS.gene73227:intron | 25.0% |
| ! | AGCTAACTTATTTGGATTAA+AGG | - | chr4.1:78319982-78320001 | None:intergenic | 25.0% |
| ! | AGTACCAATAAGAATCAAAA+GGG | - | chr4.1:78320104-78320123 | None:intergenic | 25.0% |
| ! | ATAGTTAGTACAGAAAACTT+AGG | - | chr4.1:78320240-78320259 | None:intergenic | 25.0% |
| ! | ATCAAGACTATAGAAAGAAA+TGG | - | chr4.1:78320183-78320202 | None:intergenic | 25.0% |
| ! | ATGGAATTTGTAAAAACGAA+AGG | + | chr4.1:78320915-78320934 | MS.gene73227:CDS | 25.0% |
| ! | ATTAGATGAAAACACTTTAG+AGG | + | chr4.1:78320554-78320573 | MS.gene73227:CDS | 25.0% |
| ! | CTTCAGTGAAATTCATAAAA+AGG | - | chr4.1:78319740-78319759 | None:intergenic | 25.0% |
| ! | CTTTGTACTAAATAGTGTAT+CGG | - | chr4.1:78320353-78320372 | None:intergenic | 25.0% |
| ! | TAAAAAAAAAATCCAACTCC+CGG | - | chr4.1:78319681-78319700 | None:intergenic | 25.0% |
| ! | TAGAATTTCAATTGAATGGT+TGG | + | chr4.1:78319703-78319722 | MS.gene73227:intron | 25.0% |
| ! | TAGTACCAATAAGAATCAAA+AGG | - | chr4.1:78320105-78320124 | None:intergenic | 25.0% |
| ! | TTTGTACTAAATAGTGTATC+GGG | - | chr4.1:78320352-78320371 | None:intergenic | 25.0% |
| !! | AATTTAAAAATTTGCTCACG+TGG | + | chr4.1:78319834-78319853 | MS.gene73227:intron | 25.0% |
| !! | TTTTATGATTCATTCAGGAA+TGG | + | chr4.1:78320693-78320712 | MS.gene73227:CDS | 25.0% |
| !!! | AATCCAAATAAGTTAGCTTT+TGG | + | chr4.1:78319984-78320003 | MS.gene73227:CDS | 25.0% |
| !!! | TACAAAGTACTGTCAAATAA+CGG | + | chr4.1:78320366-78320385 | MS.gene73227:intron | 25.0% |
| !!! | TCTTCTAGTTTGATTTGTAA+TGG | - | chr4.1:78320852-78320871 | None:intergenic | 25.0% |
| !!! | TTCTTATTGGTACTACTTTT+TGG | + | chr4.1:78320110-78320129 | MS.gene73227:intron | 25.0% |
| ACATTAAAGTTCATGCTAGA+GGG | + | chr4.1:78320871-78320890 | MS.gene73227:CDS | 30.0% | |
| AGCCTAGATGCAAATATAAT+AGG | - | chr4.1:78320217-78320236 | None:intergenic | 30.0% | |
| ATCTATCGAATTCCGAATTT+CGG | + | chr4.1:78319594-78319613 | MS.gene73227:intron | 30.0% | |
| CTATGTTAAATCCCGAAATT+CGG | - | chr4.1:78319609-78319628 | None:intergenic | 30.0% | |
| CTTGAAATGGAAATTTGGAA+TGG | + | chr4.1:78319643-78319662 | MS.gene73227:intron | 30.0% | |
| GAATTTGTAAAAACGAAAGG+AGG | + | chr4.1:78320918-78320937 | MS.gene73227:CDS | 30.0% | |
| GTCCTATTATATTTGCATCT+AGG | + | chr4.1:78320212-78320231 | MS.gene73227:intron | 30.0% | |
| TTGCCAAAAGCTAACTTATT+TGG | - | chr4.1:78319990-78320009 | None:intergenic | 30.0% | |
| TTGTTAATTGCGAAGAATAG+AGG | - | chr4.1:78320437-78320456 | None:intergenic | 30.0% | |
| TTTCTGCAAAATTATCGCTT+AGG | + | chr4.1:78319549-78319568 | MS.gene73227:intron | 30.0% | |
| ! | CGATATGTTTTTCCTTTTCA+AGG | + | chr4.1:78319797-78319816 | MS.gene73227:intron | 30.0% |
| ! | TTATAAGTGTCGTCAAATAG+CGG | + | chr4.1:78320283-78320302 | MS.gene73227:intron | 30.0% |
| !! | GCAAGTTTTATGATTCATTC+AGG | + | chr4.1:78320688-78320707 | MS.gene73227:CDS | 30.0% |
| !!! | TTTGGCAAAAGTTTTGAAAG+AGG | + | chr4.1:78320002-78320021 | MS.gene73227:CDS | 30.0% |
| AAAAACGAAAGGAGGAAGAT+GGG | + | chr4.1:78320926-78320945 | MS.gene73227:CDS | 35.0% | |
| AAGAAGTCTCACTTCATGAA+TGG | + | chr4.1:78319757-78319776 | MS.gene73227:intron | 35.0% | |
| AATGTGTTTGAGAGGATCAA+TGG | + | chr4.1:78320966-78320985 | MS.gene73227:CDS | 35.0% | |
| ATAGTGTATCGGGATAATAG+TGG | - | chr4.1:78320342-78320361 | None:intergenic | 35.0% | |
| ATCTTCTCATTTGCAACTTG+AGG | - | chr4.1:78320058-78320077 | None:intergenic | 35.0% | |
| ATGCTAAAGCAGCAGAAATA+AGG | + | chr4.1:78320610-78320629 | MS.gene73227:CDS | 35.0% | |
| CATTAAAGTTCATGCTAGAG+GGG | + | chr4.1:78320872-78320891 | MS.gene73227:CDS | 35.0% | |
| CTCAATAACATCATCATAGC+CGG | - | chr4.1:78320796-78320815 | None:intergenic | 35.0% | |
| GACATTAAAGTTCATGCTAG+AGG | + | chr4.1:78320870-78320889 | MS.gene73227:CDS | 35.0% | |
| TAAAAACGAAAGGAGGAAGA+TGG | + | chr4.1:78320925-78320944 | MS.gene73227:CDS | 35.0% | |
| TCATGAATGGTTGAGGAATA+AGG | + | chr4.1:78319770-78319789 | MS.gene73227:intron | 35.0% | |
| TCTATCGAATTCCGAATTTC+GGG | + | chr4.1:78319595-78319614 | MS.gene73227:intron | 35.0% | |
| TGCTAAAGCAGCAGAAATAA+GGG | + | chr4.1:78320611-78320630 | MS.gene73227:CDS | 35.0% | |
| TTGTAACGAATGTGTTTGAG+AGG | + | chr4.1:78320958-78320977 | MS.gene73227:CDS | 35.0% | |
| ! | ATGATGATGTTATTGAGAGC+TGG | + | chr4.1:78320799-78320818 | MS.gene73227:CDS | 35.0% |
| ! | TGATGATGTTATTGAGAGCT+GGG | + | chr4.1:78320800-78320819 | MS.gene73227:CDS | 35.0% |
| !! | CGAACCCTTTTGATTCTTAT+TGG | + | chr4.1:78320097-78320116 | MS.gene73227:intron | 35.0% |
| !! | CTGTGTTGCTATCTTTTTGT+AGG | - | chr4.1:78320650-78320669 | None:intergenic | 35.0% |
| AAAAAAAATCCAACTCCCGG+AGG | - | chr4.1:78319678-78319697 | None:intergenic | 40.0% | |
| AAAACGAAAGGAGGAAGATG+GGG | + | chr4.1:78320927-78320946 | MS.gene73227:CDS | 40.0% | |
| AATCAAAAGGGTTCGAGCAA+AGG | - | chr4.1:78320092-78320111 | None:intergenic | 40.0% | |
| CCTGGTATGAAAGGAATATC+CGG | + | chr4.1:78320774-78320793 | MS.gene73227:CDS | 40.0% | |
| GAATGGTTTATAACTCCTCC+GGG | + | chr4.1:78319660-78319679 | MS.gene73227:intron | 40.0% | |
| GATAGCAACACAGCAGTATT+TGG | + | chr4.1:78320657-78320676 | MS.gene73227:CDS | 40.0% | |
| GGAATGGTTTATAACTCCTC+CGG | + | chr4.1:78319659-78319678 | MS.gene73227:intron | 40.0% | |
| GGGTGTAAAAAATGAAGACG+CGG | + | chr4.1:78320503-78320522 | MS.gene73227:CDS | 40.0% | |
| TCTCACTTCATGAATGGTTG+AGG | + | chr4.1:78319763-78319782 | MS.gene73227:intron | 40.0% | |
| TGTGTTCATCCTGGTATGAA+AGG | + | chr4.1:78320765-78320784 | MS.gene73227:CDS | 40.0% | |
| ! | AAATTTGCTCACGTGGTTCA+TGG | + | chr4.1:78319841-78319860 | MS.gene73227:intron | 40.0% |
| ! | AAGCTATTGATGACTGAACC+CGG | - | chr4.1:78319930-78319949 | None:intergenic | 40.0% |
| !! | AATTGCCATTGGTTTCTGTC+AGG | + | chr4.1:78320471-78320490 | MS.gene73227:intron | 40.0% |
| !! | ATTGCCATTGGTTTCTGTCA+GGG | + | chr4.1:78320472-78320491 | MS.gene73227:intron | 40.0% |
| !! | TGCAACTTGAGGCATTGATT+AGG | - | chr4.1:78320047-78320066 | None:intergenic | 40.0% |
| AAGGAGTTCAGTTTCTTGCC+GGG | + | chr4.1:78319909-78319928 | MS.gene73227:CDS | 45.0% | |
| ATTTCGCTATGCTACAGTGC+TGG | - | chr4.1:78320405-78320424 | None:intergenic | 45.0% | |
| CAAGGAGTTCAGTTTCTTGC+CGG | + | chr4.1:78319908-78319927 | MS.gene73227:CDS | 45.0% | |
| CATGGGGTATGTTACATGCA+TGG | + | chr4.1:78320896-78320915 | MS.gene73227:CDS | 45.0% | |
| CCGGATATTCCTTTCATACC+AGG | - | chr4.1:78320777-78320796 | None:intergenic | 45.0% | |
| GAGGTATGTTGTGTTCATCC+TGG | + | chr4.1:78320756-78320775 | MS.gene73227:CDS | 45.0% | |
| GGGACTTTCTTCTACTCTCA+AGG | + | chr4.1:78319890-78319909 | MS.gene73227:intron | 45.0% | |
| TGAGAGCTGGGATTTCGTAT+GGG | + | chr4.1:78320812-78320831 | MS.gene73227:CDS | 45.0% | |
| TTGAGAGCTGGGATTTCGTA+TGG | + | chr4.1:78320811-78320830 | MS.gene73227:CDS | 45.0% | |
| TTTATAACTCCTCCGGGAGT+TGG | + | chr4.1:78319666-78319685 | MS.gene73227:intron | 45.0% | |
| AGTTCATGCTAGAGGGGACA+TGG | + | chr4.1:78320878-78320897 | MS.gene73227:CDS | 50.0% | |
| GCAAGGCATGTGGGCAAAAA+CGG | + | chr4.1:78320731-78320750 | MS.gene73227:CDS | 50.0% | |
| GCTACAGCATGCAATTGCTG+AGG | + | chr4.1:78320581-78320600 | MS.gene73227:CDS | 50.0% | |
| GTGTCCCTGACAGAAACCAA+TGG | - | chr4.1:78320479-78320498 | None:intergenic | 50.0% | |
| GTTCATGCTAGAGGGGACAT+GGG | + | chr4.1:78320879-78320898 | MS.gene73227:CDS | 50.0% | |
| TTCATGCTAGAGGGGACATG+GGG | + | chr4.1:78320880-78320899 | MS.gene73227:CDS | 50.0% | |
| TTGAGAGGATCAATGGCGAG+TGG | + | chr4.1:78320973-78320992 | MS.gene73227:CDS | 50.0% | |
| TTTCTGTCAGGGACACGACA+GGG | + | chr4.1:78320483-78320502 | MS.gene73227:intron | 50.0% | |
| ! | TTTTGCCCACATGCCTTGCA+TGG | - | chr4.1:78320730-78320749 | None:intergenic | 50.0% |
| ACATGCCTTGCATGGCTGCA+AGG | - | chr4.1:78320722-78320741 | None:intergenic | 55.0% | |
| ACGAAAGGAGGAAGATGGGG+AGG | + | chr4.1:78320930-78320949 | MS.gene73227:CDS | 55.0% | |
| CATGTGGGCAAAAACGGACG+AGG | + | chr4.1:78320737-78320756 | MS.gene73227:CDS | 55.0% | |
| GTTTCTGTCAGGGACACGAC+AGG | + | chr4.1:78320482-78320501 | MS.gene73227:intron | 55.0% | |
| TGCAGCCATGCAAGGCATGT+GGG | + | chr4.1:78320722-78320741 | MS.gene73227:CDS | 55.0% | |
| TTGCAGCCATGCAAGGCATG+TGG | + | chr4.1:78320721-78320740 | MS.gene73227:CDS | 55.0% | |
| ! | GGAGAGCATGTTGAGCAGTG+AGG | + | chr4.1:78320524-78320543 | MS.gene73227:CDS | 55.0% |
| GGCGACCTTGCAGCCATGCA+AGG | + | chr4.1:78320714-78320733 | MS.gene73227:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 78319441 | 78321037 | 78319441 | ID=MS.gene73227 |
| chr4.1 | mRNA | 78319441 | 78321037 | 78319441 | ID=MS.gene73227.t1;Parent=MS.gene73227 |
| chr4.1 | exon | 78319441 | 78319473 | 78319441 | ID=MS.gene73227.t1.exon1;Parent=MS.gene73227.t1 |
| chr4.1 | CDS | 78319441 | 78319473 | 78319441 | ID=cds.MS.gene73227.t1;Parent=MS.gene73227.t1 |
| chr4.1 | exon | 78319891 | 78320080 | 78319891 | ID=MS.gene73227.t1.exon2;Parent=MS.gene73227.t1 |
| chr4.1 | CDS | 78319891 | 78320080 | 78319891 | ID=cds.MS.gene73227.t1;Parent=MS.gene73227.t1 |
| chr4.1 | exon | 78320493 | 78321037 | 78320493 | ID=MS.gene73227.t1.exon3;Parent=MS.gene73227.t1 |
| chr4.1 | CDS | 78320493 | 78321037 | 78320493 | ID=cds.MS.gene73227.t1;Parent=MS.gene73227.t1 |
| Gene Sequence |
| Protein sequence |
