AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055693.t1 MTR_0508s0010 97.692 260 6 0 1 260 1 260 0.0 520
MS.gene055693.t1 MTR_3g088865 91.923 260 21 0 1 260 1 260 1.03e-174 481
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055693.t1 AT5G06360 86.923 260 34 0 1 260 1 260 4.69e-172 475

Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCAATCTTGAAATTAT+TGG 0.186081 1.2:-45213923 MS.gene055693:CDS
AGCTGTTCCTGCTTATCTTT+TGG 0.213713 1.2:-45214906 MS.gene055693:CDS
GACCGTCACATAAAAGAAAA+TGG 0.314189 1.2:-45215467 MS.gene055693:CDS
AGCCTCTCTCTTGCGCTTGC+GGG 0.318070 1.2:+45215424 None:intergenic
TTTCTGGGTTGTTGGTAACC+TGG 0.337046 1.2:+45213197 None:intergenic
GAAACAGACTATTGGTCTTA+AGG 0.346482 1.2:-45215255 MS.gene055693:intron
CAGGTGAATGTTAGCGAACT+TGG 0.350084 1.2:-45213351 MS.gene055693:CDS
GAAGGAGAAGGCTGGGAAAT+GGG 0.354471 1.2:-45214733 MS.gene055693:CDS
GAGGTGTACATGGGGCCATT+AGG 0.355093 1.2:+45213887 None:intergenic
TTGAATGTGCATTTAAGTTC+AGG 0.355975 1.2:+45213938 None:intergenic
GGAAGGAGAAGGCTGGGAAA+TGG 0.369119 1.2:-45214734 MS.gene055693:CDS
CCTCTCTTGGTGTCATTACC+AGG 0.375954 1.2:-45213868 MS.gene055693:CDS
GGTTCACAACCACTCTAAAA+AGG 0.386198 1.2:-45215396 MS.gene055693:CDS
AGGTGTACATGGGGCCATTA+GGG 0.387835 1.2:+45213888 None:intergenic
AAACAGACTATTGGTCTTAA+GGG 0.408363 1.2:-45215254 MS.gene055693:intron
ATTCGAGTGAAACAGACTAT+TGG 0.411760 1.2:-45215263 MS.gene055693:intron
CGAATGAATCGCTCATACTT+TGG 0.413112 1.2:+45214001 None:intergenic
CAAGGCTGATGATAATGTTC+AGG 0.418037 1.2:-45214933 MS.gene055693:CDS
TTCTGGGTTGTTGGTAACCT+GGG 0.421246 1.2:+45213198 None:intergenic
GAATGTTAGCGAACTTGGTC+TGG 0.429135 1.2:-45213346 MS.gene055693:CDS
GGAAAAGGGTTAAACCTTCT+GGG 0.431363 1.2:+45215373 None:intergenic
GTTACAAAAGCAACATTTGT+TGG 0.433060 1.2:-45214046 MS.gene055693:CDS
TTACAAAAGCAACATTTGTT+GGG 0.454651 1.2:-45214045 MS.gene055693:CDS
CTTGGTCTGGTTACACCTGC+AGG 0.457528 1.2:-45213333 MS.gene055693:CDS
GGCCCCATGTACACCTCTCT+TGG 0.465138 1.2:-45213881 MS.gene055693:CDS
GAGCCTCTCTCTTGCGCTTG+CGG 0.475580 1.2:+45215423 None:intergenic
CCGAAAAGGCACAGATGAAA+AGG 0.477452 1.2:-45215205 MS.gene055693:CDS
CGACTGACATACCTTTGCTC+TGG 0.490585 1.2:+45214868 None:intergenic
AAAGCAACATTTGTTGGGCC+TGG 0.494371 1.2:-45214040 MS.gene055693:CDS
AACATTTCATCTTCAGCCAC+AGG 0.498226 1.2:+45214536 None:intergenic
GAGCGATTCATTCGTCCCAC+TGG 0.500866 1.2:-45213992 MS.gene055693:CDS
ATGAATCGCTCATACTTTGG+TGG 0.502666 1.2:+45214004 None:intergenic
CCCCACACAACTTTCCCTGC+AGG 0.510551 1.2:+45213318 None:intergenic
TCACGATCCAAAAGATAAGC+AGG 0.510830 1.2:+45214899 None:intergenic
TACCTCAATTATAGATCCCC+TGG 0.514336 1.2:+45213850 None:intergenic
ACCTGCAGGGAAAGTTGTGT+GGG 0.521487 1.2:-45213319 MS.gene055693:CDS
GACACCAAGAGAGGTGTACA+TGG 0.523657 1.2:+45213877 None:intergenic
TGCGGGTTTCGTGATCGAAA+CGG 0.524765 1.2:+45215441 None:intergenic
CTATTGGTCTTAAGGGAAAG+AGG 0.536215 1.2:-45215247 MS.gene055693:CDS
CACCTGCAGGGAAAGTTGTG+TGG 0.542031 1.2:-45213320 MS.gene055693:CDS
TGCAATCTCACCTTAGGTAG+AGG 0.542351 1.2:+45214705 None:intergenic
AACCCGCAAGCGCAAGAGAG+AGG 0.557787 1.2:-45215426 MS.gene055693:CDS
ATGGGATGTTCCTCTACCTA+AGG 0.559228 1.2:-45214715 MS.gene055693:intron
ATTTCCTCAGGTACGTCCTG+TGG 0.566309 1.2:-45214552 MS.gene055693:intron
GCGCAAGAGAGAGGCTCGTG+AGG 0.578621 1.2:-45215417 MS.gene055693:CDS
ATGTTCAAAGTGGTCCGCAC+CGG 0.580559 1.2:-45214518 MS.gene055693:CDS
TACCAGGGGATCTATAATTG+AGG 0.588901 1.2:-45213852 MS.gene055693:intron
AGCTAAGCAATGGAAGAGAA+TGG 0.593298 1.2:-45214068 MS.gene055693:CDS
GAATGCAGGTAAATATGCCC+AGG 0.594561 1.2:-45213215 MS.gene055693:intron
ACCAACAACCCAGAAAATGA+TGG 0.595399 1.2:-45213190 MS.gene055693:CDS
CTCTCTTGGTGTCATTACCA+GGG 0.600053 1.2:-45213867 MS.gene055693:CDS
TCTCTTGGTGTCATTACCAG+GGG 0.619690 1.2:-45213866 MS.gene055693:CDS
TGCATGAAGAGTCAACATCT+AGG 0.620336 1.2:-45214958 MS.gene055693:CDS
TGAAAACACAACCAGAGCAA+AGG 0.620353 1.2:-45214879 MS.gene055693:intron
ACACCAAGAGAGGTGTACAT+GGG 0.632419 1.2:+45213878 None:intergenic
TTTAGTGAAACGCAATCCAG+TGG 0.635182 1.2:+45213976 None:intergenic
TTGGTCTGGTTACACCTGCA+GGG 0.635722 1.2:-45213332 MS.gene055693:CDS
AGAGTCAACATCTAGGCGCA+AGG 0.652247 1.2:-45214951 MS.gene055693:CDS
GCTGATGATAATGTTCAGGA+AGG 0.654350 1.2:-45214929 MS.gene055693:CDS
CCTGGTAATGACACCAAGAG+AGG 0.664047 1.2:+45213868 None:intergenic
TTAGTGAAACGCAATCCAGT+GGG 0.670436 1.2:+45213977 None:intergenic
CGGTCTATATGATCTCCTTG+AGG 0.680493 1.2:+45215485 None:intergenic
CACCAAGAGAGGTGTACATG+GGG 0.684428 1.2:+45213879 None:intergenic
GGGTTTCGTGATCGAAACGG+CGG 0.704227 1.2:+45215444 None:intergenic
TGAAGATGAAATGTTCAAAG+TGG 0.707953 1.2:-45214528 MS.gene055693:CDS
CCTGCAGGGAAAGTTGTGTG+GGG 0.734788 1.2:-45213318 MS.gene055693:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTATTTCTTAATTAT+AGG - chr1.2:45214479-45214498 MS.gene055693:intron 10.0%
!! TATTCTATAAGCAATTATTA+AGG - chr1.2:45215300-45215319 MS.gene055693:intron 15.0%
!!! TAAGAAATAAACATATTTTC+TGG + chr1.2:45214474-45214493 None:intergenic 15.0%
!! AAAACAACTTAGAACTTATA+TGG - chr1.2:45215206-45215225 MS.gene055693:CDS 20.0%
!! ACATTCAATCTTGAAATTAT+TGG - chr1.2:45214862-45214881 MS.gene055693:intron 20.0%
!! ACGTTATTATAACTCAAAAA+AGG + chr1.2:45214197-45214216 None:intergenic 20.0%
!! ATATTGTCATAAATCTAACT+GGG - chr1.2:45213489-45213508 MS.gene055693:intron 20.0%
!! GCATAAAATGTTAAAGTAAT+TGG + chr1.2:45213463-45213482 None:intergenic 20.0%
!! TATATTGTCATAAATCTAAC+TGG - chr1.2:45213488-45213507 MS.gene055693:intron 20.0%
!! TATTGTTAGTATCAAATTCA+TGG - chr1.2:45214370-45214389 MS.gene055693:intron 20.0%
!! TGTTATATTTCATGTGTTTA+TGG - chr1.2:45213644-45213663 MS.gene055693:intron 20.0%
! AAGAAAAAACAAATACAGAG+TGG + chr1.2:45214135-45214154 None:intergenic 25.0%
! AAGAGTAAGTATTACATCTA+TGG - chr1.2:45214297-45214316 MS.gene055693:intron 25.0%
! AATACATTGTAAGCACATTA+CGG - chr1.2:45214625-45214644 MS.gene055693:intron 25.0%
! ACAGTAACAAAAAATTCTTG+AGG + chr1.2:45213219-45213238 None:intergenic 25.0%
! ACGAAACCAAAATCAAAATA+GGG + chr1.2:45213256-45213275 None:intergenic 25.0%
! AGAAAAAACAAATACAGAGT+GGG + chr1.2:45214134-45214153 None:intergenic 25.0%
! ATTATTTGGCACTTATATCT+TGG - chr1.2:45215494-45215513 MS.gene055693:intron 25.0%
! GAATCATTATCAAAATGTGT+TGG - chr1.2:45215387-45215406 MS.gene055693:intron 25.0%
! GTTGATGTTAGATAATAAGT+AGG - chr1.2:45213730-45213749 MS.gene055693:intron 25.0%
! TTACAAAAGCAACATTTGTT+GGG - chr1.2:45214740-45214759 MS.gene055693:CDS 25.0%
! TTTAACTGATATTGATGCAT+TGG - chr1.2:45215537-45215556 MS.gene055693:intron 25.0%
!! ATACTTACTCTTTCTTTTAC+CGG + chr1.2:45214289-45214308 None:intergenic 25.0%
!! TTGGATTTTTATATGAATGC+AGG - chr1.2:45215556-45215575 MS.gene055693:intron 25.0%
!! TTTTGATGTTATCATATGAC+GGG - chr1.2:45214561-45214580 MS.gene055693:intron 25.0%
!!! AAATATAGCTTTAGTCTGTT+TGG - chr1.2:45215074-45215093 MS.gene055693:intron 25.0%
!!! GTTTTGATGTTATCATATGA+CGG - chr1.2:45214560-45214579 MS.gene055693:intron 25.0%
!!! TAAGTAGGTTTTGATAGATA+TGG - chr1.2:45213745-45213764 MS.gene055693:intron 25.0%
!!! TTACATCCCTATTTTGATTT+TGG - chr1.2:45213247-45213266 MS.gene055693:intron 25.0%
AAAACACAATGACTTAGAGT+TGG + chr1.2:45214545-45214564 None:intergenic 30.0%
AAGTACGTGAGTAAATGAAA+AGG + chr1.2:45215345-45215364 None:intergenic 30.0%
ACATAAGCATCATCAAATGA+AGG + chr1.2:45213186-45213205 None:intergenic 30.0%
AGTACGTGAGTAAATGAAAA+GGG + chr1.2:45215344-45215363 None:intergenic 30.0%
ATAAGCATCATCAAATGAAG+GGG + chr1.2:45213184-45213203 None:intergenic 30.0%
ATACATTGTAAGCACATTAC+GGG - chr1.2:45214626-45214645 MS.gene055693:intron 30.0%
ATATCTTGGTTTCATCATCA+TGG - chr1.2:45215508-45215527 MS.gene055693:intron 30.0%
ATCAATATGCATGCAATCTA+AGG + chr1.2:45214653-45214672 None:intergenic 30.0%
ATGTGATGACATGATTGAAA+TGG - chr1.2:45214345-45214364 MS.gene055693:intron 30.0%
ATTTCAATCATGTCATCACA+TGG + chr1.2:45214346-45214365 None:intergenic 30.0%
ATTTCATGCACTTCTAATTG+AGG - chr1.2:45214963-45214982 MS.gene055693:CDS 30.0%
CAAGAAAAATTATGCCGAAA+AGG - chr1.2:45213566-45213585 MS.gene055693:intron 30.0%
CATAAGCATCATCAAATGAA+GGG + chr1.2:45213185-45213204 None:intergenic 30.0%
CTACATCCATAAACAAAAAG+GGG + chr1.2:45214451-45214470 None:intergenic 30.0%
CTATAGAAACAAAGACATCA+TGG + chr1.2:45214599-45214618 None:intergenic 30.0%
GACGAAACCAAAATCAAAAT+AGG + chr1.2:45213257-45213276 None:intergenic 30.0%
GCTACATCCATAAACAAAAA+GGG + chr1.2:45214452-45214471 None:intergenic 30.0%
GTTACAAAAGCAACATTTGT+TGG - chr1.2:45214739-45214758 MS.gene055693:CDS 30.0%
TGAAGATGAAATGTTCAAAG+TGG - chr1.2:45214257-45214276 MS.gene055693:intron 30.0%
TGTGATGACATGATTGAAAT+GGG - chr1.2:45214346-45214365 MS.gene055693:intron 30.0%
TTAGTGTATTCAAGAGTTGT+TGG - chr1.2:45213708-45213727 MS.gene055693:intron 30.0%
! CTTTTCGGCATAATTTTTCT+TGG + chr1.2:45213568-45213587 None:intergenic 30.0%
! GGCTTCTAGTATTATGATTT+TGG - chr1.2:45214318-45214337 MS.gene055693:intron 30.0%
! GTATGTATTTTCATTTCCTC+AGG - chr1.2:45214221-45214240 MS.gene055693:intron 30.0%
! TTATGCAACCATCATTTTCT+GGG + chr1.2:45215606-45215625 None:intergenic 30.0%
! TTGAATGTGCATTTAAGTTC+AGG + chr1.2:45214850-45214869 None:intergenic 30.0%
! TTTATGCAACCATCATTTTC+TGG + chr1.2:45215607-45215626 None:intergenic 30.0%
! TTTTCCGTTCTCACAATTTA+AGG - chr1.2:45214993-45215012 MS.gene055693:intron 30.0%
!! AAACAGACTATTGGTCTTAA+GGG - chr1.2:45213531-45213550 MS.gene055693:intron 30.0%
!! GTTGTTTTCATAATCTATCC+TGG + chr1.2:45215194-45215213 None:intergenic 30.0%
!! TTTGTATCATTTTAGCCTCA+AGG - chr1.2:45213285-45213304 MS.gene055693:intron 30.0%
AACAAATACAGAGTGGGAAT+TGG + chr1.2:45214128-45214147 None:intergenic 35.0%
AGTGATTGAAAAGGTCATGT+GGG + chr1.2:45215032-45215051 None:intergenic 35.0%
ATCCATAAACAAAAAGGGGA+GGG + chr1.2:45214447-45214466 None:intergenic 35.0%
ATTCGAGTGAAACAGACTAT+TGG - chr1.2:45213522-45213541 MS.gene055693:intron 35.0%
CACCATTAAGCAAAAAAGGA+AGG - chr1.2:45214034-45214053 MS.gene055693:CDS 35.0%
CTTTAGCAAAGAAAGAAGCA+GGG - chr1.2:45214152-45214171 MS.gene055693:intron 35.0%
GAAGCAGATCTGATTGTATA+TGG - chr1.2:45214681-45214700 MS.gene055693:intron 35.0%
GACCGTCACATAAAAGAAAA+TGG - chr1.2:45213318-45213337 MS.gene055693:intron 35.0%
GATGCCTTAAATTGTGAGAA+CGG + chr1.2:45215000-45215019 None:intergenic 35.0%
GCAACACCATTAAGCAAAAA+AGG - chr1.2:45214030-45214049 MS.gene055693:CDS 35.0%
GGCTACATCCATAAACAAAA+AGG + chr1.2:45214453-45214472 None:intergenic 35.0%
GTACATGTCAGTGATTGAAA+AGG + chr1.2:45215041-45215060 None:intergenic 35.0%
TAAATGAAAAGGGTTCTGTG+TGG + chr1.2:45215334-45215353 None:intergenic 35.0%
TAAGCAAAAAAGGAAGGAGA+AGG - chr1.2:45214040-45214059 MS.gene055693:CDS 35.0%
TACATTGTAAGCACATTACG+GGG - chr1.2:45214627-45214646 MS.gene055693:intron 35.0%
TCGATAGAAGAAGAGGAAAA+GGG + chr1.2:45213429-45213448 None:intergenic 35.0%
TCTTTAGCAAAGAAAGAAGC+AGG - chr1.2:45214151-45214170 MS.gene055693:intron 35.0%
TTCGATAGAAGAAGAGGAAA+AGG + chr1.2:45213430-45213449 None:intergenic 35.0%
TTCTTGCTTACTGTGATTTC+AGG - chr1.2:45215415-45215434 MS.gene055693:CDS 35.0%
TTGTGTGGGGTAAGATTATT+TGG - chr1.2:45215480-45215499 MS.gene055693:CDS 35.0%
! AAAGTGTTCGATAGAAGAAG+AGG + chr1.2:45213436-45213455 None:intergenic 35.0%
! ATCATTTTGCAGCTAAGCAA+TGG - chr1.2:45214707-45214726 MS.gene055693:intron 35.0%
!! GAAACAGACTATTGGTCTTA+AGG - chr1.2:45213530-45213549 MS.gene055693:intron 35.0%
!! GGCCATTTTCTTTTATGTGA+CGG + chr1.2:45213323-45213342 None:intergenic 35.0%
!!! CTCCTTCCTTTTTTGCTTAA+TGG + chr1.2:45214039-45214058 None:intergenic 35.0%
AAAAAAGGAAGGAGAAGGCT+GGG - chr1.2:45214045-45214064 MS.gene055693:CDS 40.0%
AACATTTCATCTTCAGCCAC+AGG + chr1.2:45214252-45214271 None:intergenic 40.0%
AACTGTCTTCCAAAACAGCA+TGG + chr1.2:45213945-45213964 None:intergenic 40.0%
AAGCAGGGAAAGACATGAAA+CGG - chr1.2:45214167-45214186 MS.gene055693:intron 40.0%
ACCAACAACCCAGAAAATGA+TGG - chr1.2:45215595-45215614 MS.gene055693:intron 40.0%
AGCTAAGCAATGGAAGAGAA+TGG - chr1.2:45214717-45214736 MS.gene055693:CDS 40.0%
AGGAAAAGGGTTAAACCTTC+TGG + chr1.2:45213416-45213435 None:intergenic 40.0%
ATGAATCGCTCATACTTTGG+TGG + chr1.2:45214784-45214803 None:intergenic 40.0%
CAGTGATTGAAAAGGTCATG+TGG + chr1.2:45215033-45215052 None:intergenic 40.0%
CATCCATAAACAAAAAGGGG+AGG + chr1.2:45214448-45214467 None:intergenic 40.0%
CGAATGAATCGCTCATACTT+TGG + chr1.2:45214787-45214806 None:intergenic 40.0%
GGAAAAGGGTTAAACCTTCT+GGG + chr1.2:45213415-45213434 None:intergenic 40.0%
GGAGTGAAGAAAAACCCTAA+TGG - chr1.2:45214883-45214902 MS.gene055693:CDS 40.0%
TACCAGGGGATCTATAATTG+AGG - chr1.2:45214933-45214952 MS.gene055693:CDS 40.0%
TACCTCAATTATAGATCCCC+TGG + chr1.2:45214938-45214957 None:intergenic 40.0%
TCACGATCCAAAAGATAAGC+AGG + chr1.2:45213889-45213908 None:intergenic 40.0%
TCCATAAACAAAAAGGGGAG+GGG + chr1.2:45214446-45214465 None:intergenic 40.0%
TGAAAACACAACCAGAGCAA+AGG - chr1.2:45213906-45213925 MS.gene055693:CDS 40.0%
TGAATGTGCAATCTCACCTT+AGG + chr1.2:45214089-45214108 None:intergenic 40.0%
TGCATGAAGAGTCAACATCT+AGG - chr1.2:45213827-45213846 MS.gene055693:intron 40.0%
TTAGTGAAACGCAATCCAGT+GGG + chr1.2:45214811-45214830 None:intergenic 40.0%
TTGATTCTCTTGCACACTCT+AGG - chr1.2:45213972-45213991 MS.gene055693:CDS 40.0%
TTTAGTGAAACGCAATCCAG+TGG + chr1.2:45214812-45214831 None:intergenic 40.0%
! ACCATCATTTTCTGGGTTGT+TGG + chr1.2:45215599-45215618 None:intergenic 40.0%
! AGCTGTTCCTGCTTATCTTT+TGG - chr1.2:45213879-45213898 MS.gene055693:CDS 40.0%
! CAAGGCTGATGATAATGTTC+AGG - chr1.2:45213852-45213871 MS.gene055693:intron 40.0%
! CCTTTTCATCTGTGCCTTTT+CGG + chr1.2:45213583-45213602 None:intergenic 40.0%
! GATGCTGCAATTTTTGTGTG+CGG - chr1.2:45214506-45214525 MS.gene055693:intron 40.0%
! GCTGATGATAATGTTCAGGA+AGG - chr1.2:45213856-45213875 MS.gene055693:CDS 40.0%
! GGTTCACAACCACTCTAAAA+AGG - chr1.2:45213389-45213408 MS.gene055693:intron 40.0%
! TACTCTTTCTTTTACCGGTG+CGG + chr1.2:45214284-45214303 None:intergenic 40.0%
!! CTATTGGTCTTAAGGGAAAG+AGG - chr1.2:45213538-45213557 MS.gene055693:intron 40.0%
!! CTCATACTTTGGTGGTTTTC+TGG + chr1.2:45214776-45214795 None:intergenic 40.0%
ACAATGTTCATACGCTCTCC+AGG - chr1.2:45215173-45215192 MS.gene055693:intron 45.0%
AGCAGGGAAAGACATGAAAC+GGG - chr1.2:45214168-45214187 MS.gene055693:intron 45.0%
ATGGGATGTTCCTCTACCTA+AGG - chr1.2:45214070-45214089 MS.gene055693:intron 45.0%
CAAAAAAGGAAGGAGAAGGC+TGG - chr1.2:45214044-45214063 MS.gene055693:CDS 45.0%
CAGGTGAATGTTAGCGAACT+TGG - chr1.2:45215434-45215453 MS.gene055693:CDS 45.0%
CGGTCTATATGATCTCCTTG+AGG + chr1.2:45213303-45213322 None:intergenic 45.0%
GAATGCAGGTAAATATGCCC+AGG - chr1.2:45215570-45215589 MS.gene055693:intron 45.0%
GAATGTTAGCGAACTTGGTC+TGG - chr1.2:45215439-45215458 MS.gene055693:CDS 45.0%
GCTCTTGTCTGTCAACAGTT+TGG - chr1.2:45213801-45213820 MS.gene055693:intron 45.0%
GGAGGGGACAAAGAATGATA+AGG + chr1.2:45214430-45214449 None:intergenic 45.0%
TGCAATCTCACCTTAGGTAG+AGG + chr1.2:45214083-45214102 None:intergenic 45.0%
! AAAGCAACATTTGTTGGGCC+TGG - chr1.2:45214745-45214764 MS.gene055693:CDS 45.0%
! ACACCAAGAGAGGTGTACAT+GGG + chr1.2:45214910-45214929 None:intergenic 45.0%
! CCGAAAAGGCACAGATGAAA+AGG - chr1.2:45213580-45213599 MS.gene055693:intron 45.0%
!! CTCTCTTGGTGTCATTACCA+GGG - chr1.2:45214918-45214937 MS.gene055693:CDS 45.0%
!! GGTGGTTTTCTGGTAAAACC+AGG + chr1.2:45214766-45214785 None:intergenic 45.0%
!! TCCCCTCCCCTTTTTGTTTA+TGG - chr1.2:45214442-45214461 MS.gene055693:intron 45.0%
!! TCTCTTGGTGTCATTACCAG+GGG - chr1.2:45214919-45214938 MS.gene055693:CDS 45.0%
!! TTCTGGGTTGTTGGTAACCT+GGG + chr1.2:45215590-45215609 None:intergenic 45.0%
!! TTTCTGGGTTGTTGGTAACC+TGG + chr1.2:45215591-45215610 None:intergenic 45.0%
ACCTGCAGGGAAAGTTGTGT+GGG - chr1.2:45215466-45215485 MS.gene055693:CDS 50.0%
AGAGTCAACATCTAGGCGCA+AGG - chr1.2:45213834-45213853 MS.gene055693:intron 50.0%
AGGTGTACATGGGGCCATTA+GGG + chr1.2:45214900-45214919 None:intergenic 50.0%
ATGTTCAAAGTGGTCCGCAC+CGG - chr1.2:45214267-45214286 MS.gene055693:intron 50.0%
ATTTCCTCAGGTACGTCCTG+TGG - chr1.2:45214233-45214252 MS.gene055693:intron 50.0%
CGACTGACATACCTTTGCTC+TGG + chr1.2:45213920-45213939 None:intergenic 50.0%
GAAGGAGAAGGCTGGGAAAT+GGG - chr1.2:45214052-45214071 MS.gene055693:CDS 50.0%
GCAGGGAAAGACATGAAACG+GGG - chr1.2:45214169-45214188 MS.gene055693:intron 50.0%
TGCGGGTTTCGTGATCGAAA+CGG + chr1.2:45213347-45213366 None:intergenic 50.0%
TTGGTCTGGTTACACCTGCA+GGG - chr1.2:45215453-45215472 MS.gene055693:CDS 50.0%
! CACCAAGAGAGGTGTACATG+GGG + chr1.2:45214909-45214928 None:intergenic 50.0%
! CCACTCTAAAAAGGCCCAGA+AGG - chr1.2:45213398-45213417 MS.gene055693:intron 50.0%
! CCTGGTAATGACACCAAGAG+AGG + chr1.2:45214920-45214939 None:intergenic 50.0%
! GACACCAAGAGAGGTGTACA+TGG + chr1.2:45214911-45214930 None:intergenic 50.0%
!! CCTCTCTTGGTGTCATTACC+AGG - chr1.2:45214917-45214936 MS.gene055693:CDS 50.0%
!! CCTTCTGGGCCTTTTTAGAG+TGG + chr1.2:45213401-45213420 None:intergenic 50.0%
!! TCAGTCGTGCCATGCTGTTT+TGG - chr1.2:45213933-45213952 MS.gene055693:CDS 50.0%
CACCTGCAGGGAAAGTTGTG+TGG - chr1.2:45215465-45215484 MS.gene055693:CDS 55.0%
CCTGCAGGGAAAGTTGTGTG+GGG - chr1.2:45215467-45215486 MS.gene055693:CDS 55.0%
CTTGGTCTGGTTACACCTGC+AGG - chr1.2:45215452-45215471 MS.gene055693:CDS 55.0%
GAGCGATTCATTCGTCCCAC+TGG - chr1.2:45214793-45214812 MS.gene055693:intron 55.0%
GAGGTGTACATGGGGCCATT+AGG + chr1.2:45214901-45214920 None:intergenic 55.0%
GGAAGGAGAAGGCTGGGAAA+TGG - chr1.2:45214051-45214070 MS.gene055693:CDS 55.0%
GGGTTTCGTGATCGAAACGG+CGG + chr1.2:45213344-45213363 None:intergenic 55.0%
AACCCGCAAGCGCAAGAGAG+AGG - chr1.2:45213359-45213378 MS.gene055693:intron 60.0%
AGCCTCTCTCTTGCGCTTGC+GGG + chr1.2:45213364-45213383 None:intergenic 60.0%
CCCCACACAACTTTCCCTGC+AGG + chr1.2:45215470-45215489 None:intergenic 60.0%
GAGCCTCTCTCTTGCGCTTG+CGG + chr1.2:45213365-45213384 None:intergenic 60.0%
GGCCCCATGTACACCTCTCT+TGG - chr1.2:45214904-45214923 MS.gene055693:CDS 60.0%
TCAGCCACAGGACGTACCTG+AGG + chr1.2:45214240-45214259 None:intergenic 60.0%
GCGCAAGAGAGAGGCTCGTG+AGG - chr1.2:45213368-45213387 MS.gene055693:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 45213162 45215645 45213162 ID=MS.gene055693
chr1.2 mRNA 45213162 45215645 45213162 ID=MS.gene055693.t1;Parent=MS.gene055693
chr1.2 exon 45215643 45215645 45215643 ID=MS.gene055693.t1.exon1;Parent=MS.gene055693.t1
chr1.2 CDS 45215643 45215645 45215643 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45215388 45215507 45215388 ID=MS.gene055693.t1.exon2;Parent=MS.gene055693.t1
chr1.2 CDS 45215388 45215507 45215388 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45215203 45215270 45215203 ID=MS.gene055693.t1.exon3;Parent=MS.gene055693.t1
chr1.2 CDS 45215203 45215270 45215203 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45214880 45214988 45214880 ID=MS.gene055693.t1.exon4;Parent=MS.gene055693.t1
chr1.2 CDS 45214880 45214988 45214880 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45214716 45214784 45214716 ID=MS.gene055693.t1.exon5;Parent=MS.gene055693.t1
chr1.2 CDS 45214716 45214784 45214716 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45214507 45214564 45214507 ID=MS.gene055693.t1.exon6;Parent=MS.gene055693.t1
chr1.2 CDS 45214507 45214564 45214507 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45213853 45214088 45213853 ID=MS.gene055693.t1.exon7;Parent=MS.gene055693.t1
chr1.2 CDS 45213853 45214088 45213853 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45213319 45213370 45213319 ID=MS.gene055693.t1.exon8;Parent=MS.gene055693.t1
chr1.2 CDS 45213319 45213370 45213319 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
chr1.2 exon 45213162 45213229 45213162 ID=MS.gene055693.t1.exon9;Parent=MS.gene055693.t1
chr1.2 CDS 45213162 45213229 45213162 ID=cds.MS.gene055693.t1;Parent=MS.gene055693.t1
Gene Sequence

>MS.gene055693

ATGGTTAGTTTGATTCACTCCCCTTCATTTGATGATGCTTATGTTTTTTTTATTCCTCAAGAATTTTTTGTTACTGTTTTCTTTTTTACATCCCTATTTTGATTTTGGTTTCGTCTACTTGTGTTTGTATCATTTTAGCCTCAAGGAGATCATATAGACCGTCACATAAAAGAAAATGGCCGCCGTTTCGATCACGAAACCCGCAAGCGCAAGAGAGAGGCTCGTGAGGTTCACAACCACTCTAAAAAGGCCCAGAAGGTTTAACCCTTTTCCTCTTCTTCTATCGAACACTTTGATTCCAATTACTTTAACATTTTATGCATTTGTATATTGTCATAAATCTAACTGGGTATCTGTTTAATTCGAGTGAAACAGACTATTGGTCTTAAGGGAAAGAGGAATGCCAAGAAAAATTATGCCGAAAAGGCACAGATGAAAAGGACGTGAGTTTTTCTTATGTCTCAAATTTTTAATTTTGTTGTTGTTATATTTCATGTGTTTATGGCAATAATATTTGTGCTTGATTTCTTAAATCTAGATTAATGTTTAGTGTATTCAAGAGTTGTTGGTTGATGTTAGATAATAAGTAGGTTTTGATAGATATGGATTTGTCTGTCAAATGTAAGAGAGAATGATTTCGCTCTTGTCTGTCAACAGTTTGGCGATGCATGAAGAGTCAACATCTAGGCGCAAGGCTGATGATAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTTTGGATCGTGAAAACACAACCAGAGCAAAGGTATGTCAGTCGTGCCATGCTGTTTTGGAAGACAGTTTTGACTCTTGATTCTCTTGCACACTCTAGGAAGTAATGTGCTTGTTTTCTATTTCTAGATTCTCAGCAACACCATTAAGCAAAAAAGGAAGGAGAAGGCTGGGAAATGGGATGTTCCTCTACCTAAGGTGAGATTGCACATTCAATACTTTAATTTGCTTCCAATTCCCACTCTGTATTTGTTTTTTCTTTAGCAAAGAAAGAAGCAGGGAAAGACATGAAACGGGGTTCCTTTTTTGAGTTATAATAACGTTTACGTATGTATTTTCATTTCCTCAGGTACGTCCTGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGCACCGGTAAAAGAAAGAGTAAGTATTACATCTATGGCTTCTAGTATTATGATTTTGGTACCATGTGATGACATGATTGAAATGGGTTATTGTTAGTATCAAATTCATGGTTTTCGTTTCTATATTGTTCTGCATATCATATCTCCTTATCATTCTTTGTCCCCTCCCCTTTTTGTTTATGGATGTAGCCAGAAAATATGTTTATTTCTTAATTATAGGTTGAGATGCTGCAATTTTTGTGTGCGGTTAATTCAGAATACCAACTCTAAGTCATTGTGTTTTGATGTTATCATATGACGGGTTTGCAAAGTTGCCATGATGTCTTTGTTTCTATAGTCTCTTAATACATTGTAAGCACATTACGGGGCCTTAGATTGCATGCATATTGATCATTTATTGAAGCAGATCTGATTGTATATGGCTCATCATTTTGCAGCTAAGCAATGGAAGAGAATGGTTACAAAAGCAACATTTGTTGGGCCTGGTTTTACCAGAAAACCACCAAAGTATGAGCGATTCATTCGTCCCACTGGATTGCGTTTCACTAAAGCTCATGTCACTCATCCTGAACTTAAATGCACATTCAATCTTGAAATTATTGGAGTGAAGAAAAACCCTAATGGCCCCATGTACACCTCTCTTGGTGTCATTACCAGGGGATCTATAATTGAGGTATTTATATTTCATGCACTTCTAATTGAGGTTTTTCTTTTTCCGTTCTCACAATTTAAGGCATCTACGTTGATCCCACATGACCTTTTCAATCACTGACATGTACTTTGTTATACTGTAAATATAGCTTTAGTCTGTTTGGATTGACTAATTTGAGCTTATCTACTAGTATAAGTACTTATGAGACTGTTTGAGAGAGTTTATGAAAACAGTTTACGACAATGTTCATACGCTCTCCAGGATAGATTATGAAAACAACTTAGAACTTATATGGAAACTGTTTGACTTCATTTTATCTTTTGTTATAAAAATAACTTATACATAAGCACTTATACGATAAGCATTTATTCTATAAGCAATTATTAAGGTTGTGTATCCACACAGAACCCTTTTCATTTACTCACGTACTTTGTTACAATGTATTCGTAATATGAATCATTATCAAAATGTGTTGGTCATTTTCTTGCTTACTGTGATTTCAGGTGAATGTTAGCGAACTTGGTCTGGTTACACCTGCAGGGAAAGTTGTGTGGGGTAAGATTATTTGGCACTTATATCTTGGTTTCATCATCATGGTTGAAATTTAACTGATATTGATGCATTGGATTTTTATATGAATGCAGGTAAATATGCCCAGGTTACCAACAACCCAGAAAATGATGGTTGCATAAATGCTGTTTTACTTGTTTAA
Protein sequence

>MS.gene055693.t1

MPQGDHIDRHIKENGRRFDHETRKRKREAREVHNHSKKAQKTIGLKGKRNAKKNYAEKAQMKRTLAMHEESTSRRKADDNVQEGAVPAYLLDRENTTRAKILSNTIKQKRKEKAGKWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVITRGSIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV