AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30530.t1 MTR_4g065017 96.418 335 8 3 1 334 1 332 0.0 660
MS.gene30530.t1 MTR_2g097910 57.714 350 95 13 1 329 1 318 5.16e-112 328
MS.gene30530.t1 MTR_3g028740 84.000 125 16 1 1 121 3 127 1.41e-72 228
MS.gene30530.t1 MTR_1g085040 80.374 107 21 0 15 121 11 117 4.83e-59 194
MS.gene30530.t1 MTR_2g099740 76.415 106 25 0 15 120 11 116 3.76e-57 190
MS.gene30530.t1 MTR_7g110830 77.570 107 24 0 15 121 11 117 8.60e-57 188
MS.gene30530.t1 MTR_3g077110 79.245 106 22 0 15 120 11 116 9.01e-57 187
MS.gene30530.t1 MTR_4g105130 78.302 106 23 0 15 120 11 116 1.24e-56 187
MS.gene30530.t1 MTR_1g112760 77.358 106 24 0 15 120 12 117 2.93e-56 182
MS.gene30530.t1 MTR_1g085640 75.701 107 26 0 15 121 11 117 8.70e-56 186
MS.gene30530.t1 MTR_7g111290 82.828 99 17 0 15 113 11 109 4.06e-55 184
MS.gene30530.t1 MTR_8g017440 72.642 106 29 0 15 120 11 116 8.96e-54 180
MS.gene30530.t1 MTR_8g017540 72.642 106 29 0 15 120 57 162 2.17e-53 180
MS.gene30530.t1 MTR_8g017500 70.755 106 31 0 15 120 11 116 1.30e-52 177
MS.gene30530.t1 MTR_8g098860 69.159 107 33 0 15 121 11 117 1.46e-52 176
MS.gene30530.t1 MTR_1g100667 71.171 111 32 0 10 120 7 117 7.79e-52 172
MS.gene30530.t1 MTR_5g010020 57.047 149 56 3 15 163 11 151 1.85e-51 174
MS.gene30530.t1 MTR_2g064160 49.189 185 83 5 12 189 7 187 1.37e-50 171
MS.gene30530.t1 MTR_8g017340 72.897 107 28 1 15 120 11 117 3.95e-50 174
MS.gene30530.t1 MTR_4g082230 54.483 145 59 1 15 159 11 148 4.19e-50 172
MS.gene30530.t1 MTR_4g082290 55.556 144 57 1 16 159 12 148 6.46e-50 171
MS.gene30530.t1 MTR_2g011660 67.568 111 36 0 13 123 10 120 7.03e-50 170
MS.gene30530.t1 MTR_8g017390 71.028 107 30 1 15 120 11 117 1.01e-49 172
MS.gene30530.t1 MTR_4g091490 66.667 111 37 0 13 123 10 120 3.75e-49 168
MS.gene30530.t1 MTR_8g017350 71.963 107 29 1 15 120 11 117 7.78e-49 173
MS.gene30530.t1 MTR_3g097450 69.903 103 31 0 18 120 14 116 1.21e-48 165
MS.gene30530.t1 MTR_4g073420 48.824 170 73 3 18 185 14 171 1.51e-48 164
MS.gene30530.t1 MTR_6g055910 60.000 130 49 1 10 136 8 137 1.56e-48 164
MS.gene30530.t1 MTR_5g079670 59.350 123 45 2 1 123 1 118 3.33e-48 161
MS.gene30530.t1 MTR_8g095390 66.990 103 34 0 18 120 14 116 1.14e-47 163
MS.gene30530.t1 MTR_2g089620 60.156 128 44 1 16 143 12 132 1.18e-47 163
MS.gene30530.t1 MTR_5g078140 57.895 133 49 1 16 141 12 144 2.76e-47 162
MS.gene30530.t1 MTR_3g074520 63.889 108 39 0 16 123 12 119 3.17e-47 163
MS.gene30530.t1 MTR_2g089450 64.035 114 41 0 14 127 10 123 3.17e-47 160
MS.gene30530.t1 MTR_7g011170 64.815 108 38 0 16 123 12 119 7.15e-47 161
MS.gene30530.t1 MTR_3g065440 66.667 108 36 0 16 123 12 119 7.45e-47 161
MS.gene30530.t1 MTR_6g012690 65.741 108 37 0 16 123 12 119 7.51e-47 162
MS.gene30530.t1 MTR_7g076740 56.489 131 54 2 16 143 12 142 1.30e-46 160
MS.gene30530.t1 MTR_7g115650 42.857 203 95 5 16 218 12 193 2.46e-46 156
MS.gene30530.t1 MTR_1g100653 57.895 114 48 0 16 129 12 125 3.24e-46 159
MS.gene30530.t1 MTR_5g029840 55.814 129 50 1 16 144 12 133 5.69e-46 159
MS.gene30530.t1 MTR_4g485530 48.235 170 76 3 1 162 1 166 1.03e-45 154
MS.gene30530.t1 MTR_4g102380 63.889 108 39 0 16 123 12 119 1.07e-45 157
MS.gene30530.t1 MTR_7g035075 45.226 199 92 5 1 191 1 190 2.00e-45 154
MS.gene30530.t1 MTR_4g125520 45.732 164 89 0 16 179 12 175 2.17e-45 157
MS.gene30530.t1 MTR_4g478180 55.469 128 50 1 16 143 13 133 6.69e-45 157
MS.gene30530.t1 MTR_1g076150 60.345 116 46 0 16 131 12 127 9.93e-45 154
MS.gene30530.t1 MTR_5g007370 52.448 143 56 2 1 143 2 132 1.03e-44 155
MS.gene30530.t1 MTR_8g031360 62.385 109 40 1 16 123 13 121 1.10e-44 155
MS.gene30530.t1 MTR_6g009430 59.259 108 44 0 16 123 12 119 3.57e-44 154
MS.gene30530.t1 MTR_2g089420 43.350 203 108 3 13 208 8 210 1.59e-43 155
MS.gene30530.t1 MTR_4g121460 57.627 118 46 1 16 129 12 129 2.75e-43 152
MS.gene30530.t1 MTR_1g043050 62.162 111 42 0 16 126 12 122 3.32e-43 150
MS.gene30530.t1 MTR_3g461490 61.111 108 42 0 16 123 12 119 3.85e-43 151
MS.gene30530.t1 MTR_2g034790 49.068 161 74 3 16 174 12 166 4.89e-43 151
MS.gene30530.t1 MTR_7g117730 59.813 107 43 0 16 122 12 118 8.21e-43 149
MS.gene30530.t1 MTR_8g020490 58.333 120 46 1 6 125 2 117 1.66e-42 148
MS.gene30530.t1 MTR_3g083540 59.813 107 43 0 16 122 41 147 2.32e-42 149
MS.gene30530.t1 MTR_1g043080 62.857 105 39 0 16 120 12 116 2.41e-42 147
MS.gene30530.t1 MTR_0251s0050 58.879 107 44 0 16 122 13 119 2.66e-42 148
MS.gene30530.t1 MTR_6g006030 57.798 109 46 0 15 123 13 121 4.79e-42 145
MS.gene30530.t1 MTR_7g096930 61.905 105 40 0 16 120 12 116 8.15e-42 147
MS.gene30530.t1 MTR_0008s0390 58.036 112 46 1 16 126 13 124 1.99e-41 145
MS.gene30530.t1 MTR_1g045610 56.780 118 51 0 5 122 10 127 2.64e-41 145
MS.gene30530.t1 MTR_1g110460 55.455 110 49 0 14 123 24 133 3.09e-41 146
MS.gene30530.t1 MTR_5g042030 61.111 108 42 0 16 123 7 114 5.90e-41 145
MS.gene30530.t1 MTR_8g027345 59.434 106 43 0 16 121 12 117 7.33e-41 145
MS.gene30530.t1 MTR_4g100720 60.185 108 43 0 12 119 9 116 1.42e-40 140
MS.gene30530.t1 MTR_0008s0470 56.250 112 48 1 16 126 13 124 4.02e-40 142
MS.gene30530.t1 MTR_7g087130 54.701 117 53 0 16 132 12 128 4.64e-40 144
MS.gene30530.t1 MTR_0140s0030 52.756 127 59 1 16 141 13 139 4.82e-40 144
MS.gene30530.t1 MTR_0489s0020 52.756 127 59 1 16 141 13 139 4.82e-40 144
MS.gene30530.t1 MTR_7g010210 59.434 106 43 0 16 121 12 117 7.24e-40 143
MS.gene30530.t1 MTR_3g039990 52.893 121 57 0 16 136 13 133 7.99e-40 142
MS.gene30530.t1 MTR_7g010210 59.434 106 43 0 16 121 12 117 9.85e-40 141
MS.gene30530.t1 MTR_2g067420 62.000 100 38 0 15 114 13 112 1.16e-39 142
MS.gene30530.t1 MTR_1g017140 42.197 173 89 3 16 177 12 184 1.96e-39 142
MS.gene30530.t1 MTR_5g014990 41.989 181 95 3 16 186 12 192 3.69e-39 140
MS.gene30530.t1 MTR_3g052430 57.547 106 45 0 16 121 41 146 4.19e-39 145
MS.gene30530.t1 MTR_1g073170 58.716 109 45 0 14 122 18 126 4.25e-39 139
MS.gene30530.t1 MTR_1g017000 53.271 107 49 1 15 120 11 117 4.42e-39 139
MS.gene30530.t1 MTR_3g052450 57.547 106 45 0 16 121 40 145 5.11e-39 145
MS.gene30530.t1 MTR_8g042410 57.692 104 44 0 16 119 37 140 1.72e-38 144
MS.gene30530.t1 MTR_6g012180 61.616 99 38 0 16 114 12 110 1.85e-38 139
MS.gene30530.t1 MTR_1g086530 53.571 112 52 0 16 127 33 144 2.07e-38 138
MS.gene30530.t1 MTR_1g086510 52.066 121 58 0 7 127 12 132 2.26e-38 137
MS.gene30530.t1 MTR_1g021230 58.654 104 43 0 16 119 57 160 3.30e-38 141
MS.gene30530.t1 MTR_1g062940 55.660 106 47 0 16 121 6 111 5.70e-38 135
MS.gene30530.t1 MTR_3g011610 55.660 106 47 0 16 121 37 142 8.26e-38 141
MS.gene30530.t1 MTR_4g057635 54.867 113 50 1 16 127 12 124 2.33e-37 136
MS.gene30530.t1 MTR_4g063100 52.212 113 54 0 17 129 8 120 3.56e-37 134
MS.gene30530.t1 MTR_0063s0090 55.769 104 46 0 14 117 10 113 6.07e-37 132
MS.gene30530.t1 MTR_0008s0280 56.190 105 46 0 14 118 10 114 8.21e-37 132
MS.gene30530.t1 MTR_2g096380 45.000 140 64 1 12 138 2 141 2.55e-36 131
MS.gene30530.t1 MTR_3g103570 54.717 106 47 1 16 120 12 117 3.65e-36 134
MS.gene30530.t1 MTR_2g033170 56.481 108 47 0 16 123 24 131 4.57e-36 133
MS.gene30530.t1 MTR_5g078910 55.238 105 47 0 16 120 7 111 6.91e-36 132
MS.gene30530.t1 MTR_7g111290 87.879 66 8 0 48 113 2 67 8.34e-36 132
MS.gene30530.t1 MTR_7g109320 56.522 115 50 0 16 130 12 126 1.14e-35 132
MS.gene30530.t1 MTR_7g102110 52.294 109 51 1 16 123 12 120 1.22e-35 130
MS.gene30530.t1 MTR_2g088170 57.547 106 45 0 16 121 29 134 1.91e-35 134
MS.gene30530.t1 MTR_2g095520 58.000 100 41 1 16 114 12 111 3.62e-35 130
MS.gene30530.t1 MTR_0197s0010 51.786 112 54 0 21 132 6 117 4.48e-35 127
MS.gene30530.t1 MTR_6g090405 52.174 115 54 1 15 128 11 125 9.80e-35 127
MS.gene30530.t1 MTR_5g079220 50.862 116 57 0 5 120 10 125 1.36e-34 128
MS.gene30530.t1 MTR_5g079290 52.381 105 50 0 16 120 17 121 2.68e-34 127
MS.gene30530.t1 MTR_5g078800 54.286 105 48 0 16 120 7 111 2.98e-34 126
MS.gene30530.t1 MTR_1g083630 54.206 107 49 0 15 121 11 117 4.32e-34 132
MS.gene30530.t1 MTR_5g062790 36.842 190 109 4 17 201 10 193 8.00e-34 126
MS.gene30530.t1 MTR_4g097570 57.576 99 41 1 16 113 12 110 9.55e-34 126
MS.gene30530.t1 MTR_5g079120 52.381 105 50 0 16 120 61 165 1.16e-33 126
MS.gene30530.t1 MTR_0247s0040 53.922 102 47 0 16 117 7 108 2.83e-33 121
MS.gene30530.t1 MTR_4g123040 53.704 108 50 0 16 123 24 131 3.00e-33 125
MS.gene30530.t1 MTR_4g128670 55.000 100 44 1 16 114 12 111 1.31e-32 124
MS.gene30530.t1 MTR_8g060940 54.455 101 46 0 16 116 7 107 1.56e-32 121
MS.gene30530.t1 MTR_0193s0090 52.427 103 49 0 16 118 7 109 2.60e-32 120
MS.gene30530.t1 MTR_5g088080 41.667 144 77 3 17 159 13 150 2.76e-32 121
MS.gene30530.t1 MTR_5g088150 41.667 144 77 3 17 159 13 150 2.76e-32 121
MS.gene30530.t1 MTR_5g488210 41.667 144 77 3 17 159 13 150 2.76e-32 121
MS.gene30530.t1 MTR_5g078860 51.429 105 51 0 16 120 7 111 2.97e-32 122
MS.gene30530.t1 MTR_7g017260 52.336 107 49 1 16 120 25 131 3.09e-32 121
MS.gene30530.t1 MTR_5g088640 41.667 144 77 3 17 159 13 150 3.15e-32 121
MS.gene30530.t1 MTR_4g097570 57.000 100 41 2 16 113 12 111 3.39e-32 122
MS.gene30530.t1 MTR_6g055910 61.538 91 32 1 49 136 18 108 7.23e-32 120
MS.gene30530.t1 MTR_5g488170 41.667 144 77 3 17 159 13 150 7.48e-32 119
MS.gene30530.t1 MTR_5g078930 53.465 101 47 0 17 117 10 110 7.70e-32 119
MS.gene30530.t1 MTR_0001s0360 51.429 105 51 0 16 120 7 111 8.88e-32 120
MS.gene30530.t1 MTR_5g078950 50.980 102 50 0 16 117 7 108 1.43e-31 119
MS.gene30530.t1 MTR_8g006470 49.138 116 57 2 9 123 3 117 3.11e-31 119
MS.gene30530.t1 MTR_4g128190 49.167 120 47 2 6 124 1 107 3.56e-31 117
MS.gene30530.t1 MTR_4g063100 58.537 82 34 0 48 129 10 91 3.58e-30 114
MS.gene30530.t1 MTR_5g007300 58.065 93 37 1 2 92 48 140 2.47e-29 110
MS.gene30530.t1 MTR_4g029540 45.833 120 64 1 16 134 10 129 3.83e-29 114
MS.gene30530.t1 MTR_5g088610 50.000 106 52 1 17 121 10 115 5.25e-29 114
MS.gene30530.t1 MTR_4g094982 39.773 176 87 5 18 181 5 173 5.98e-29 112
MS.gene30530.t1 MTR_2g096380 50.000 104 39 1 48 138 19 122 7.33e-29 111
MS.gene30530.t1 MTR_3g463400 45.763 118 62 2 16 133 131 246 4.31e-28 114
MS.gene30530.t1 MTR_1g085880 52.174 115 53 2 6 118 1 115 4.87e-28 108
MS.gene30530.t1 MTR_5g070020 41.353 133 74 2 8 137 112 243 6.11e-28 112
MS.gene30530.t1 MTR_5g016510 48.113 106 54 1 18 123 5 109 1.42e-27 110
MS.gene30530.t1 MTR_1g085770 52.174 115 53 2 6 118 1 115 2.47e-27 109
MS.gene30530.t1 MTR_4g019370 50.980 102 49 1 18 119 38 138 6.47e-27 108
MS.gene30530.t1 MTR_5g049190 44.248 113 62 1 6 118 7 118 1.18e-26 105
MS.gene30530.t1 MTR_3g101290 47.863 117 60 1 18 134 37 152 6.16e-26 103
MS.gene30530.t1 MTR_6g015455 50.000 102 50 1 18 119 5 105 6.31e-26 109
MS.gene30530.t1 MTR_3g045430 42.342 111 64 0 13 123 10 120 1.08e-25 104
MS.gene30530.t1 MTR_3g110028 45.946 111 59 1 10 120 77 186 1.70e-25 107
MS.gene30530.t1 MTR_7g061330 45.946 111 59 1 10 120 105 214 1.71e-25 107
MS.gene30530.t1 MTR_7g461410 45.946 111 59 1 10 120 105 214 1.71e-25 107
MS.gene30530.t1 MTR_7g061330 45.946 111 59 1 10 120 69 178 2.62e-25 106
MS.gene30530.t1 MTR_6g027360 40.496 121 69 2 9 128 69 187 2.06e-24 101
MS.gene30530.t1 MTR_3g077650 43.220 118 63 2 2 119 168 281 2.72e-24 103
MS.gene30530.t1 MTR_1g057980 47.000 100 52 1 16 115 78 176 4.26e-24 100
MS.gene30530.t1 MTR_6g027340 40.171 117 67 2 13 128 11 125 7.40e-24 97.4
MS.gene30530.t1 MTR_5g082910 46.364 110 58 1 7 116 8 116 1.47e-23 98.6
MS.gene30530.t1 MTR_6g074860 45.545 101 54 1 18 118 4 103 1.61e-23 97.4
MS.gene30530.t1 MTR_7g035350 44.444 108 57 2 18 125 225 329 3.72e-23 99.8
MS.gene30530.t1 MTR_6g027370 42.342 111 63 1 18 128 99 208 3.75e-23 98.6
MS.gene30530.t1 MTR_1g026870 43.243 111 62 1 10 120 77 186 4.52e-23 100
MS.gene30530.t1 MTR_4g105660 44.118 102 56 1 18 119 180 280 4.83e-23 99.4
MS.gene30530.t1 MTR_5g041570 40.164 122 68 2 7 124 119 239 5.39e-23 99.4
MS.gene30530.t1 MTR_4g082040 40.000 120 71 1 18 137 105 223 7.23e-23 99.0
MS.gene30530.t1 MTR_7g451170 42.157 102 58 1 18 119 191 291 2.18e-22 97.4
MS.gene30530.t1 MTR_7g037260 42.202 109 61 2 18 126 145 251 3.06e-22 96.3
MS.gene30530.t1 MTR_4g088015 41.584 101 58 1 18 118 221 320 9.42e-22 95.9
MS.gene30530.t1 MTR_7g450950 38.261 115 70 1 18 132 157 270 9.13e-21 91.7
MS.gene30530.t1 MTR_5g010650 44.231 104 57 1 10 113 102 204 1.34e-20 92.8
MS.gene30530.t1 MTR_3g089045 42.593 108 59 2 18 124 16 121 6.45e-20 88.6
MS.gene30530.t1 MTR_7g037130 39.450 109 64 2 18 126 145 251 6.55e-19 86.7
MS.gene30530.t1 MTR_7g086960 42.157 102 58 1 18 119 89 189 1.35e-18 85.9
MS.gene30530.t1 MTR_0023s0210 49.351 77 39 0 16 92 7 83 2.68e-17 76.3
MS.gene30530.t1 MTR_7g061550 39.362 94 55 1 21 112 10 103 8.76e-16 77.8
MS.gene30530.t1 MTR_5g038910 36.634 101 63 1 21 121 29 128 9.16e-16 77.8
MS.gene30530.t1 MTR_5g038910 36.634 101 63 1 21 121 29 128 1.08e-15 78.2
MS.gene30530.t1 MTR_8g468380 36.283 113 70 2 21 132 25 136 1.54e-15 77.4
MS.gene30530.t1 MTR_6g055910 51.515 66 29 1 74 136 2 67 2.02e-14 71.6
MS.gene30530.t1 MTR_8g017480 66.667 42 14 0 15 56 11 52 2.17e-14 67.0
MS.gene30530.t1 MTR_4g063100 50.000 56 28 0 74 129 1 56 1.05e-13 68.9
MS.gene30530.t1 MTR_2g096380 42.308 78 32 1 74 138 1 78 2.97e-13 67.4
MS.gene30530.t1 MTR_1g008970 36.145 83 53 0 38 120 110 192 6.71e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30530.t1 AT3G08500 45.628 366 137 14 1 332 3 340 5.82e-75 234
MS.gene30530.t1 AT5G12870 83.333 126 19 1 1 124 1 126 2.70e-72 226
MS.gene30530.t1 AT1G09540 79.439 107 22 0 15 121 11 117 6.12e-59 194
MS.gene30530.t1 AT5G26660 79.439 107 22 0 15 121 11 117 6.69e-58 191
MS.gene30530.t1 AT1G57560 78.302 106 23 0 15 120 11 116 1.08e-57 189
MS.gene30530.t1 AT1G57560 78.302 106 23 0 15 120 11 116 1.11e-57 188
MS.gene30530.t1 AT4G01680 76.852 108 25 0 14 121 10 117 2.44e-57 186
MS.gene30530.t1 AT3G13890 76.415 106 25 0 15 120 11 116 4.47e-57 189
MS.gene30530.t1 AT4G01680 77.570 107 24 0 15 121 11 117 1.64e-56 187
MS.gene30530.t1 AT3G13890 70.435 115 25 1 15 120 11 125 5.05e-54 181
MS.gene30530.t1 AT4G01680 69.748 119 24 1 15 121 11 129 6.18e-53 178
MS.gene30530.t1 AT1G63910 69.159 107 33 0 15 121 11 117 1.94e-52 177
MS.gene30530.t1 AT3G12720 61.667 120 46 0 1 120 7 126 1.55e-50 170
MS.gene30530.t1 AT4G05100 68.182 110 35 0 14 123 11 120 3.47e-50 170
MS.gene30530.t1 AT4G21440 68.182 110 35 0 14 123 10 119 1.07e-49 169
MS.gene30530.t1 AT2G16720 51.829 164 66 2 18 179 14 166 5.29e-49 165
MS.gene30530.t1 AT5G54230 67.593 108 35 0 16 123 12 119 1.19e-48 166
MS.gene30530.t1 AT1G22640 64.035 114 39 1 18 131 14 125 3.21e-48 163
MS.gene30530.t1 AT5G14750 58.333 120 50 0 1 120 1 120 4.57e-48 160
MS.gene30530.t1 AT3G02940 57.031 128 48 1 16 143 12 132 8.33e-48 163
MS.gene30530.t1 AT4G12350 63.717 113 41 0 16 128 12 124 1.09e-47 162
MS.gene30530.t1 AT4G09460 66.990 103 34 0 18 120 14 116 1.13e-47 160
MS.gene30530.t1 AT4G34990 67.961 103 33 0 18 120 14 116 1.40e-47 162
MS.gene30530.t1 AT3G02940 57.031 128 48 1 16 143 12 132 1.87e-47 163
MS.gene30530.t1 AT3G02940 57.031 128 48 1 16 143 12 132 1.87e-47 163
MS.gene30530.t1 AT3G01140 65.741 108 37 0 16 123 12 119 2.21e-47 163
MS.gene30530.t1 AT5G10280 64.815 108 38 0 16 123 12 119 2.23e-47 163
MS.gene30530.t1 AT4G28110 66.355 107 36 0 14 120 10 116 2.27e-47 161
MS.gene30530.t1 AT4G38620 55.000 140 49 2 18 157 14 139 3.06e-47 161
MS.gene30530.t1 AT5G65230 64.815 108 38 0 16 123 12 119 4.92e-47 161
MS.gene30530.t1 AT3G01140 65.741 108 37 0 16 123 55 162 5.89e-47 163
MS.gene30530.t1 AT5G15310 64.815 108 38 0 16 123 12 119 7.36e-47 159
MS.gene30530.t1 AT5G15310 64.815 108 38 0 16 123 12 119 8.99e-47 161
MS.gene30530.t1 AT5G15310 64.815 108 38 0 16 123 12 119 1.00e-46 160
MS.gene30530.t1 AT5G61420 46.988 166 87 1 16 181 12 176 1.18e-46 162
MS.gene30530.t1 AT5G60890 53.125 128 56 1 16 139 12 139 2.08e-46 159
MS.gene30530.t1 AT2G31180 53.147 143 64 2 16 157 12 152 2.92e-46 157
MS.gene30530.t1 AT5G14340 56.923 130 53 1 16 142 24 153 5.33e-46 157
MS.gene30530.t1 AT1G34670 62.727 110 41 0 14 123 10 119 7.11e-46 160
MS.gene30530.t1 AT1G66230 65.741 108 37 0 16 123 12 119 8.20e-46 157
MS.gene30530.t1 AT3G48920 64.486 107 38 0 12 118 14 120 9.84e-46 156
MS.gene30530.t1 AT5G52260 64.912 114 40 0 6 119 2 115 1.06e-45 157
MS.gene30530.t1 AT5G16770 54.615 130 52 1 14 143 10 132 1.72e-45 158
MS.gene30530.t1 AT5G16770 54.615 130 52 1 14 143 10 132 1.72e-45 158
MS.gene30530.t1 AT3G61250 62.037 108 41 0 16 123 12 119 2.13e-45 157
MS.gene30530.t1 AT5G16770 54.615 130 52 1 14 143 10 132 2.72e-45 157
MS.gene30530.t1 AT5G16770 54.615 130 52 1 14 143 10 132 2.72e-45 157
MS.gene30530.t1 AT5G16600 63.889 108 39 0 16 123 12 119 2.94e-45 157
MS.gene30530.t1 AT3G01530 55.645 124 55 0 3 126 12 135 4.26e-45 153
MS.gene30530.t1 AT1G35515 62.857 105 39 0 18 122 14 118 5.53e-45 153
MS.gene30530.t1 AT3G23250 60.748 107 42 0 16 122 12 118 5.65e-45 155
MS.gene30530.t1 AT4G25560 66.972 109 35 1 17 124 11 119 6.56e-45 155
MS.gene30530.t1 AT1G74430 64.762 105 37 0 16 120 12 116 7.01e-45 154
MS.gene30530.t1 AT1G18570 64.762 105 37 0 16 120 13 117 7.30e-45 157
MS.gene30530.t1 AT4G22680 62.963 108 40 0 16 123 12 119 1.11e-44 154
MS.gene30530.t1 AT5G52600 44.910 167 82 2 16 174 12 176 1.51e-44 151
MS.gene30530.t1 AT1G06180 66.667 105 35 0 16 120 12 116 1.93e-44 152
MS.gene30530.t1 AT3G27810 45.882 170 76 3 15 180 19 176 1.96e-44 152
MS.gene30530.t1 AT3G27920 47.945 146 70 1 13 158 11 150 2.93e-44 152
MS.gene30530.t1 AT5G40330 48.252 143 69 1 17 159 13 150 7.98e-44 150
MS.gene30530.t1 AT1G56160 54.478 134 61 0 14 147 12 145 1.46e-43 152
MS.gene30530.t1 AT2G47460 61.111 108 42 0 16 123 12 119 2.33e-43 153
MS.gene30530.t1 AT5G56110 60.550 109 43 0 16 124 12 120 3.43e-43 152
MS.gene30530.t1 AT5G07690 54.331 127 56 1 16 142 12 136 4.80e-43 152
MS.gene30530.t1 AT5G07700 60.952 105 41 0 16 120 12 116 5.53e-43 151
MS.gene30530.t1 AT5G07700 60.952 105 41 0 16 120 12 116 5.53e-43 151
MS.gene30530.t1 AT5G40350 58.491 106 44 0 15 120 16 121 9.97e-43 147
MS.gene30530.t1 AT4G17785 60.185 108 43 0 16 123 13 120 1.04e-42 151
MS.gene30530.t1 AT4G17785 60.185 108 43 0 16 123 13 120 1.25e-42 151
MS.gene30530.t1 AT1G79180 57.377 122 52 0 15 136 13 134 1.84e-42 149
MS.gene30530.t1 AT3G62610 56.198 121 48 1 16 131 12 132 4.53e-42 149
MS.gene30530.t1 AT1G16490 46.429 168 75 2 15 170 13 177 6.85e-42 147
MS.gene30530.t1 AT5G62320 57.759 116 42 1 16 124 13 128 1.88e-41 145
MS.gene30530.t1 AT1G68320 55.856 111 49 0 13 123 16 126 2.19e-41 146
MS.gene30530.t1 AT5G49330 61.905 105 40 0 16 120 12 116 2.78e-41 147
MS.gene30530.t1 AT3G13540 55.963 109 48 0 12 120 19 127 3.37e-41 144
MS.gene30530.t1 AT5G35550 63.208 106 39 0 15 120 13 118 4.15e-41 144
MS.gene30530.t1 AT1G74080 60.952 105 41 0 16 120 12 116 8.11e-41 145
MS.gene30530.t1 AT3G30210 62.037 108 41 0 17 124 28 135 1.73e-40 143
MS.gene30530.t1 AT1G18710 58.095 105 44 0 16 120 12 116 2.41e-40 142
MS.gene30530.t1 AT3G12820 58.879 107 44 0 14 120 12 118 2.53e-40 142
MS.gene30530.t1 AT3G47600 57.407 108 46 0 16 123 12 119 2.66e-40 144
MS.gene30530.t1 AT1G08810 59.048 105 43 0 16 120 12 116 4.74e-40 142
MS.gene30530.t1 AT3G24310 61.321 106 41 0 17 122 19 124 5.97e-40 142
MS.gene30530.t1 AT1G48000 46.405 153 76 2 15 165 31 179 6.86e-40 140
MS.gene30530.t1 AT4G26930 43.452 168 91 1 16 183 19 182 7.03e-40 144
MS.gene30530.t1 AT2G26960 41.081 185 94 3 1 171 1 184 1.17e-39 145
MS.gene30530.t1 AT5G62470 56.481 108 47 0 16 123 12 119 1.44e-39 143
MS.gene30530.t1 AT1G74650 57.798 109 46 0 15 123 11 119 2.09e-39 142
MS.gene30530.t1 AT4G13480 57.658 111 47 0 17 127 7 117 2.18e-39 140
MS.gene30530.t1 AT5G55020 57.547 106 45 0 16 121 26 131 2.93e-39 145
MS.gene30530.t1 AT3G49690 59.259 108 43 1 16 122 12 119 4.64e-39 140
MS.gene30530.t1 AT5G26660 78.481 79 17 0 43 121 8 86 5.48e-39 140
MS.gene30530.t1 AT2G32460 56.604 106 46 0 16 121 18 123 5.93e-39 144
MS.gene30530.t1 AT5G06100 56.481 108 47 0 14 121 30 137 7.31e-39 143
MS.gene30530.t1 AT2G32460 56.604 106 46 0 16 121 6 111 7.53e-39 144
MS.gene30530.t1 AT2G47190 50.833 120 59 0 16 135 20 139 9.86e-39 139
MS.gene30530.t1 AT5G65790 58.333 108 44 1 16 122 12 119 1.28e-38 141
MS.gene30530.t1 AT3G28910 54.464 112 51 0 16 127 12 123 1.31e-38 139
MS.gene30530.t1 AT3G28470 60.606 99 39 0 16 114 12 110 1.39e-38 139
MS.gene30530.t1 AT1G25340 54.206 107 49 0 17 123 19 125 1.98e-38 138
MS.gene30530.t1 AT5G06100 56.481 108 47 0 14 121 30 137 2.21e-38 143
MS.gene30530.t1 AT5G06100 56.481 108 47 0 14 121 30 137 2.21e-38 143
MS.gene30530.t1 AT5G06100 56.481 108 47 0 14 121 30 137 2.21e-38 143
MS.gene30530.t1 AT5G06100 56.481 108 47 0 14 121 30 137 2.21e-38 143
MS.gene30530.t1 AT3G11440 54.717 106 48 0 16 121 41 146 8.55e-38 140
MS.gene30530.t1 AT5G62470 56.481 108 46 1 16 123 12 118 9.20e-38 138
MS.gene30530.t1 AT3G11440 54.717 106 48 0 16 121 41 146 2.97e-37 140
MS.gene30530.t1 AT3G11440 54.717 106 48 0 16 121 41 146 2.97e-37 140
MS.gene30530.t1 AT3G11440 54.717 106 48 0 16 121 41 146 2.97e-37 140
MS.gene30530.t1 AT5G23000 45.578 147 58 2 15 139 11 157 4.98e-37 135
MS.gene30530.t1 AT3G06490 57.407 108 46 0 16 123 19 126 8.27e-37 135
MS.gene30530.t1 AT5G57620 56.604 106 45 1 16 120 12 117 1.18e-36 135
MS.gene30530.t1 AT1G79180 45.806 155 51 1 15 136 13 167 1.37e-36 134
MS.gene30530.t1 AT5G59780 50.000 120 60 0 10 129 2 121 3.08e-36 131
MS.gene30530.t1 AT3G46130 51.327 113 55 0 17 129 10 122 1.04e-35 130
MS.gene30530.t1 AT3G53200 55.769 104 46 0 16 119 9 112 1.40e-34 127
MS.gene30530.t1 AT2G36890 53.774 106 48 1 16 120 12 117 2.22e-34 128
MS.gene30530.t1 AT2G36890 53.774 106 48 1 16 120 53 158 3.82e-34 128
MS.gene30530.t1 AT5G49620 51.786 112 54 0 16 127 26 137 5.15e-34 127
MS.gene30530.t1 AT4G37780 52.830 106 49 1 16 120 12 117 5.65e-34 127
MS.gene30530.t1 AT1G25340 51.402 107 47 1 17 123 19 120 1.45e-33 125
MS.gene30530.t1 AT1G25340 51.402 107 47 1 17 123 19 120 2.92e-33 125
MS.gene30530.t1 AT1G66370 52.885 104 49 0 16 119 8 111 4.53e-33 123
MS.gene30530.t1 AT2G26950 45.378 119 64 1 18 136 18 135 3.03e-32 124
MS.gene30530.t1 AT5G35550 72.727 77 21 0 44 120 45 121 3.75e-32 121
MS.gene30530.t1 AT3G27810 45.588 136 58 3 49 180 4 127 1.76e-31 117
MS.gene30530.t1 AT1G66380 48.819 127 57 1 16 134 8 134 3.54e-31 115
MS.gene30530.t1 AT3G47600 55.208 96 39 1 28 123 22 113 3.88e-31 120
MS.gene30530.t1 AT3G60460 44.595 148 75 3 1 147 1 142 9.88e-31 118
MS.gene30530.t1 AT3G12820 72.464 69 19 0 52 120 2 70 2.28e-30 114
MS.gene30530.t1 AT5G49620 46.032 126 54 1 16 127 26 151 2.30e-30 117
MS.gene30530.t1 AT5G14750 68.116 69 22 0 52 120 18 86 3.49e-30 113
MS.gene30530.t1 AT5G40350 63.514 74 27 0 47 120 3 76 5.42e-30 112
MS.gene30530.t1 AT1G56650 54.808 104 47 0 16 119 8 111 7.38e-30 114
MS.gene30530.t1 AT1G66390 54.808 104 47 0 16 119 8 111 4.06e-29 112
MS.gene30530.t1 AT3G46130 57.317 82 35 0 48 129 9 90 6.92e-29 111
MS.gene30530.t1 AT5G59780 58.025 81 34 0 49 129 20 100 1.12e-28 110
MS.gene30530.t1 AT3G46130 58.025 81 34 0 49 129 20 100 1.58e-28 110
MS.gene30530.t1 AT3G53200 64.789 71 25 0 49 119 9 79 3.44e-27 106
MS.gene30530.t1 AT5G11050 29.358 218 142 3 18 233 105 312 6.81e-27 110
MS.gene30530.t1 AT4G18770 41.007 139 78 3 16 153 215 350 4.69e-26 107
MS.gene30530.t1 AT5G67300 42.063 126 63 2 18 143 6 121 8.21e-26 105
MS.gene30530.t1 AT3G50060 40.625 128 75 1 18 145 6 132 1.47e-25 104
MS.gene30530.t1 AT5G40360 42.342 111 62 2 18 128 158 266 1.76e-25 105
MS.gene30530.t1 AT1G69560 30.986 213 128 5 7 205 96 303 1.86e-25 104
MS.gene30530.t1 AT3G55730 38.922 167 92 4 18 182 56 214 1.89e-25 105
MS.gene30530.t1 AT1G69560 30.986 213 128 5 7 205 112 319 2.52e-25 104
MS.gene30530.t1 AT3G09230 42.963 135 71 3 8 138 46 178 3.17e-25 105
MS.gene30530.t1 AT4G37260 49.020 102 51 1 18 119 13 113 9.76e-25 102
MS.gene30530.t1 AT5G02320 42.400 125 69 2 10 132 119 242 1.10e-24 105
MS.gene30530.t1 AT5G02320 42.400 125 69 2 10 132 119 242 1.10e-24 105
MS.gene30530.t1 AT5G02320 42.400 125 69 2 10 132 59 182 1.12e-24 104
MS.gene30530.t1 AT1G22640 65.714 70 22 1 62 131 1 68 1.58e-24 99.4
MS.gene30530.t1 AT3G27785 46.602 103 52 2 18 119 189 289 2.22e-24 103
MS.gene30530.t1 AT2G39880 50.000 102 50 1 18 119 50 150 3.13e-24 102
MS.gene30530.t1 AT5G58850 39.098 133 76 2 7 135 94 225 3.25e-24 102
MS.gene30530.t1 AT3G09370 45.455 110 59 1 10 119 127 235 8.55e-24 102
MS.gene30530.t1 AT3G09370 45.455 110 59 1 10 119 122 230 8.60e-24 102
MS.gene30530.t1 AT3G09370 45.455 110 59 1 10 119 135 243 1.03e-23 102
MS.gene30530.t1 AT2G23290 47.059 102 53 1 18 119 13 113 1.75e-23 99.0
MS.gene30530.t1 AT3G23250 65.574 61 21 0 62 122 1 61 2.68e-23 96.7
MS.gene30530.t1 AT1G17950 43.925 107 59 1 18 124 5 110 4.01e-23 96.7
MS.gene30530.t1 AT1G26780 44.144 111 59 2 16 125 96 204 5.89e-23 98.2
MS.gene30530.t1 AT1G26780 44.144 111 59 2 16 125 96 204 6.15e-23 96.7
MS.gene30530.t1 AT5G11510 43.243 111 62 1 10 120 73 182 6.27e-23 100
MS.gene30530.t1 AT5G11510 43.243 111 62 1 10 120 73 182 6.27e-23 100
MS.gene30530.t1 AT5G11510 43.243 111 62 1 10 120 73 182 6.27e-23 100
MS.gene30530.t1 AT2G25230 42.991 107 59 2 21 127 29 133 7.03e-23 95.5
MS.gene30530.t1 AT5G11510 43.243 111 62 1 10 120 73 182 7.90e-23 99.8
MS.gene30530.t1 AT5G11510 43.243 111 62 1 10 120 73 182 8.32e-23 99.8
MS.gene30530.t1 AT1G66380 50.526 95 39 1 48 134 7 101 1.04e-22 91.7
MS.gene30530.t1 AT4G32730 41.441 111 64 1 10 120 79 188 6.41e-22 97.4
MS.gene30530.t1 AT4G32730 41.441 111 64 1 10 120 79 188 6.41e-22 97.4
MS.gene30530.t1 AT4G32730 41.441 111 64 1 10 120 79 188 6.41e-22 97.4
MS.gene30530.t1 AT4G32730 41.441 111 64 1 10 120 79 188 6.41e-22 97.4
MS.gene30530.t1 AT4G32730 41.441 111 64 1 10 120 79 188 6.76e-22 97.1
MS.gene30530.t1 AT3G29020 36.719 128 79 2 18 145 65 190 1.50e-21 92.0
MS.gene30530.t1 AT3G29020 36.719 128 79 2 18 145 67 192 2.86e-21 92.8
MS.gene30530.t1 AT5G14750 62.712 59 22 0 62 120 1 59 3.50e-21 88.6
MS.gene30530.t1 AT5G14750 62.712 59 22 0 62 120 1 59 3.50e-21 88.6
MS.gene30530.t1 AT1G73410 43.925 107 59 1 18 124 6 111 4.00e-21 90.9
MS.gene30530.t1 AT4G33450 37.500 128 75 3 5 128 2 128 6.70e-21 90.5
MS.gene30530.t1 AT1G73410 43.925 107 59 1 18 124 6 111 1.04e-20 89.0
MS.gene30530.t1 AT5G17800 40.385 104 61 1 18 121 93 195 2.94e-20 90.1
MS.gene30530.t1 AT1G71030 55.072 69 31 0 55 123 5 73 5.14e-20 86.7
MS.gene30530.t1 AT1G71030 55.072 69 31 0 55 123 19 87 7.87e-20 86.3
MS.gene30530.t1 AT4G00540 41.739 115 61 3 16 126 101 213 5.06e-19 87.4
MS.gene30530.t1 AT1G18960 39.815 108 58 4 18 123 10 112 8.65e-19 85.9
MS.gene30530.t1 AT4G00540 41.739 115 61 3 16 126 99 211 8.93e-19 87.0
MS.gene30530.t1 AT5G40430 38.393 112 66 3 16 127 52 160 2.06e-18 84.0
MS.gene30530.t1 AT2G02820 40.196 102 60 1 21 122 33 133 2.12e-18 85.1
MS.gene30530.t1 AT2G02820 40.196 102 60 1 21 122 33 133 2.52e-18 85.9
MS.gene30530.t1 AT2G02820 40.196 102 60 1 21 122 33 133 3.51e-18 85.5
MS.gene30530.t1 AT1G66380 53.846 78 36 0 16 93 8 85 4.20e-18 79.3
MS.gene30530.t1 AT2G37630 38.017 121 72 2 21 138 7 127 6.34e-17 81.3
MS.gene30530.t1 AT5G39700 33.333 135 83 2 15 149 53 180 3.91e-16 75.9
MS.gene30530.t1 AT1G14350 38.235 102 62 1 21 122 28 128 6.13e-16 78.6
MS.gene30530.t1 AT1G14350 38.235 102 62 1 21 122 28 128 6.13e-16 78.6
MS.gene30530.t1 AT5G59780 50.000 56 28 0 74 129 1 56 7.17e-14 69.3
MS.gene30530.t1 AT3G46130 50.000 56 28 0 74 129 1 56 1.13e-13 69.3
MS.gene30530.t1 AT4G25560 63.462 52 18 1 74 124 2 53 3.07e-13 68.6
MS.gene30530.t1 AT1G74650 64.286 42 15 0 82 123 2 43 8.23e-12 65.1
MS.gene30530.t1 AT5G61420 39.175 97 58 1 85 181 2 97 1.24e-11 64.7
MS.gene30530.t1 AT1G14350 44.444 63 35 0 60 122 23 85 1.66e-11 65.1
MS.gene30530.t1 AT1G14350 44.444 63 35 0 60 122 23 85 1.66e-11 65.1
MS.gene30530.t1 AT3G28910 64.103 39 14 0 82 120 2 40 2.31e-11 63.5

Find 54 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATTTACATTCCCTTCT+TGG 0.170127 4.4:+41153025 MS.gene30530:CDS
TGACAGCAAAAGTTTCTATT+TGG 0.177929 4.4:+41154981 MS.gene30530:CDS
CCCATGTTATGGTCTTTGTT+AGG 0.202900 4.4:-41154772 None:intergenic
AATACCATTATGTCTGGTTC+TGG 0.257266 4.4:+41154904 MS.gene30530:CDS
ACAATGAAATCAAGAACTTT+TGG 0.281358 4.4:+41154671 MS.gene30530:CDS
GGGAGTGTAAATATTATTAA+TGG 0.283826 4.4:+41155015 MS.gene30530:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.287022 4.4:-41154658 None:intergenic
TTCCAAGAAGGGAATGTAAA+TGG 0.312468 4.4:-41153027 None:intergenic
TACATTCCCTTCTTGGAAAC+AGG 0.335148 4.4:+41153032 MS.gene30530:CDS
GAGATTTATCTGTTGGAGAT+TGG 0.356328 4.4:+41155280 MS.gene30530:CDS
CAAATTGCGGCGCGCTTACC+TGG 0.371371 4.4:+41154640 MS.gene30530:CDS
CCATGTTATGGTCTTTGTTA+GGG 0.387108 4.4:-41154771 None:intergenic
ATCTGTTGGAGATTGGGATT+TGG 0.391051 4.4:+41155287 MS.gene30530:CDS
AGATTTATCTGTTGGAGATT+GGG 0.394773 4.4:+41155281 MS.gene30530:CDS
AATATTATTAATGGTGTAGA+AGG 0.397124 4.4:+41155024 MS.gene30530:CDS
TAAATAGTGGACAAGGTTGT+TGG 0.399936 4.4:+41152879 MS.gene30530:CDS
TTATAAAACCTCCCATGTTA+TGG 0.401350 4.4:-41154783 None:intergenic
ATACCATTATGTCTGGTTCT+GGG 0.402889 4.4:+41154905 MS.gene30530:CDS
GAGGTGGAGAATTTATTTCA+TGG 0.406594 4.4:+41155258 MS.gene30530:CDS
GAGGATTCATCGCTTGCGTT+TGG 0.417571 4.4:-41154742 None:intergenic
ATTATGTCTGGTTCTGGGTG+TGG 0.433859 4.4:+41154910 MS.gene30530:CDS
TTTCATGGAGATTTATCTGT+TGG 0.445436 4.4:+41155273 MS.gene30530:CDS
ATAAGCTTCTCATCTTCCTC+TGG 0.451621 4.4:-41152845 None:intergenic
ACACCCAGAACCAGACATAA+TGG 0.452955 4.4:-41154908 None:intergenic
AGGAAGCCAGAGGTTGCATC+TGG 0.463990 4.4:+41152782 MS.gene30530:CDS
TGGTGTAGAAGGAGATGAGA+TGG 0.483693 4.4:+41155035 MS.gene30530:CDS
ACAAACAATAAGCTTAGAAA+AGG 0.485655 4.4:+41152812 MS.gene30530:CDS
ATGAACTACATGTTAAATAG+TGG 0.487097 4.4:+41152866 MS.gene30530:CDS
TTCTTCAATAATAGTACTAC+AGG 0.501923 4.4:+41154934 MS.gene30530:CDS
AGTGATGTTGCTAGAAATGC+TGG 0.514684 4.4:+41152902 MS.gene30530:CDS
AATGCACCACGTTTAAGATC+AGG 0.532050 4.4:-41152977 None:intergenic
AATGCATGCAATGGAGAAGA+TGG 0.536091 4.4:+41155135 MS.gene30530:CDS
TCAAAGATGGTCTCAAATTG+CGG 0.554550 4.4:+41154627 MS.gene30530:intron
AAGTGGACCTGTTTCCAAGA+AGG 0.565199 4.4:-41153039 None:intergenic
AGTGGACCTGTTTCCAAGAA+GGG 0.574708 4.4:-41153038 None:intergenic
GGAGATGAAGTATTGAACAT+AGG 0.583399 4.4:-41154850 None:intergenic
ATGATATGTTCTTCTTCCTG+TGG 0.588188 4.4:-41153004 None:intergenic
CCCTAACAAAGACCATAACA+TGG 0.603188 4.4:+41154771 MS.gene30530:CDS
TAGAGCTGATCATGATGAGG+TGG 0.613651 4.4:+41155242 MS.gene30530:CDS
AATGCTGGATTGCAAAGATG+TGG 0.617901 4.4:+41152917 MS.gene30530:CDS
ATAAGCTTAGAAAAGGATTG+TGG 0.618255 4.4:+41152819 MS.gene30530:CDS
TAAGATGGATCAATTACTTG+AGG 0.619133 4.4:+41152954 MS.gene30530:CDS
GTCTTTGTTAGGGTCGTACG+AGG 0.620442 4.4:-41154761 None:intergenic
ACGTGGTGCATTCTCACCAC+AGG 0.629748 4.4:+41152988 MS.gene30530:CDS
AAAAGGATTGTGGTCACCAG+AGG 0.635321 4.4:+41152829 MS.gene30530:CDS
AAAATGGAGAATGCATGCAA+TGG 0.638345 4.4:+41155126 MS.gene30530:CDS
TTAGTATTAACACTCTCTAG+AGG 0.641496 4.4:-41155075 None:intergenic
GTATTAACACTCTCTAGAGG+AGG 0.651371 4.4:-41155072 None:intergenic
TACATGTTAAATAGTGGACA+AGG 0.672810 4.4:+41152872 MS.gene30530:CDS
AACAAAGACCATAACATGGG+AGG 0.678788 4.4:+41154775 MS.gene30530:CDS
TTGAGGCCTGATCTTAAACG+TGG 0.683943 4.4:+41152971 MS.gene30530:CDS
CCTAACAAAGACCATAACAT+GGG 0.690044 4.4:+41154772 MS.gene30530:CDS
TAGTACAATGAGGAAGCCAG+AGG 0.698178 4.4:+41152772 None:intergenic
AAATAGAGCTGATCATGATG+AGG 0.716489 4.4:+41155239 MS.gene30530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATAATAATAAAAAA+AGG + chr4.4:41153360-41153379 MS.gene30530:intron 0.0%
!!! ATTTTATAATAATAAAAAAA+GGG + chr4.4:41153361-41153380 MS.gene30530:intron 0.0%
!!! TTCATCATTTTATTAAAAAT+TGG - chr4.4:41153342-41153361 None:intergenic 10.0%
!! TCATAAATTAAAACATGAAA+AGG + chr4.4:41153806-41153825 MS.gene30530:intron 15.0%
!! TTCTCAAATTAAGATATATT+TGG - chr4.4:41153160-41153179 None:intergenic 15.0%
!!! AATTCTAAAAAATAGTCTAA+AGG - chr4.4:41153437-41153456 None:intergenic 15.0%
!! AAACATGAGTATGTATAATA+TGG + chr4.4:41153285-41153304 MS.gene30530:intron 20.0%
!! AAAGATTATACATGAATAGA+AGG - chr4.4:41154527-41154546 None:intergenic 20.0%
!! AACAACAAATTTAAATCACT+TGG - chr4.4:41153962-41153981 None:intergenic 20.0%
!! AATATTATTAATGGTGTAGA+AGG + chr4.4:41155024-41155043 MS.gene30530:CDS 20.0%
!! ACAACAAATTTAAATCACTT+GGG - chr4.4:41153961-41153980 None:intergenic 20.0%
!! ATACACAACAATATAGTATA+TGG + chr4.4:41153614-41153633 MS.gene30530:intron 20.0%
!! ATATTATACATACTCATGTT+TGG - chr4.4:41153286-41153305 None:intergenic 20.0%
!! GTCTAAAAAATCTAAATCTT+TGG - chr4.4:41153782-41153801 None:intergenic 20.0%
!! TACAATTGAAAACAACATAT+AGG + chr4.4:41154208-41154227 MS.gene30530:intron 20.0%
!! TCTATTTGGAAAAAATGTTT+GGG + chr4.4:41154995-41155014 MS.gene30530:CDS 20.0%
!! TTCTATATCATAAATGATTC+AGG - chr4.4:41153693-41153712 None:intergenic 20.0%
!! TTCTATTTGGAAAAAATGTT+TGG + chr4.4:41154994-41155013 MS.gene30530:CDS 20.0%
!! TTTACTGTCTATTTCATAAA+TGG + chr4.4:41154407-41154426 MS.gene30530:intron 20.0%
!!! ATACATAGCTATTTTTTTCA+TGG - chr4.4:41153527-41153546 None:intergenic 20.0%
!!! CATCTTTAAAACATTTTTTG+AGG - chr4.4:41153312-41153331 None:intergenic 20.0%
!!! CTCAAAAAATGTTTTAAAGA+TGG + chr4.4:41153310-41153329 MS.gene30530:intron 20.0%
!!! GATAAATAAATTGATGATCT+AGG - chr4.4:41153075-41153094 None:intergenic 20.0%
!!! TACATAGCTATTTTTTTCAT+GGG - chr4.4:41153526-41153545 None:intergenic 20.0%
! ACAAACAATAAGCTTAGAAA+AGG + chr4.4:41152812-41152831 MS.gene30530:CDS 25.0%
! ATGAACTACATGTTAAATAG+TGG + chr4.4:41152866-41152885 MS.gene30530:CDS 25.0%
! CAGTTTGAAAAATCAAGAAA+TGG - chr4.4:41155342-41155361 None:intergenic 25.0%
! CCAAATTTGATTCCATATAT+TGG + chr4.4:41153104-41153123 MS.gene30530:intron 25.0%
! CCAATATATGGAATCAAATT+TGG - chr4.4:41153107-41153126 None:intergenic 25.0%
! GATAACTTGAGAGAAAAAAA+TGG - chr4.4:41153473-41153492 None:intergenic 25.0%
! TAAATTAAGGAGCCAATATA+TGG - chr4.4:41153119-41153138 None:intergenic 25.0%
! TAACTAAATAGTATTACGAG+AGG + chr4.4:41154456-41154475 MS.gene30530:intron 25.0%
! TTCTTCAATAATAGTACTAC+AGG + chr4.4:41154934-41154953 MS.gene30530:CDS 25.0%
! TTGTGAACATAGTGTAAAAA+TGG + chr4.4:41155110-41155129 MS.gene30530:CDS 25.0%
!! ACAATGAAATCAAGAACTTT+TGG + chr4.4:41154671-41154690 MS.gene30530:CDS 25.0%
!! GGGAGTGTAAATATTATTAA+TGG + chr4.4:41155015-41155034 MS.gene30530:CDS 25.0%
!!! GAAGATAACCATTTTTACAT+TGG + chr4.4:41153177-41153196 MS.gene30530:intron 25.0%
AAAGATGTGGAAAAAGTTGT+AGG + chr4.4:41152930-41152949 MS.gene30530:CDS 30.0%
AAATTGTCTGTCTCTCTAAA+TGG - chr4.4:41154022-41154041 None:intergenic 30.0%
ACTGTGATTTCGTCTTTATT+TGG + chr4.4:41154232-41154251 MS.gene30530:intron 30.0%
AGATTTATCTGTTGGAGATT+GGG + chr4.4:41155281-41155300 MS.gene30530:CDS 30.0%
ATAAGCTTAGAAAAGGATTG+TGG + chr4.4:41152819-41152838 MS.gene30530:CDS 30.0%
ATAGTATTACGAGAGGAAAT+AGG + chr4.4:41154463-41154482 MS.gene30530:intron 30.0%
CTCCTTAATTCACTATTTAG+TGG + chr4.4:41153200-41153219 MS.gene30530:intron 30.0%
GTCCACTAAATAGTGAATTA+AGG - chr4.4:41153205-41153224 None:intergenic 30.0%
TAAGATGGATCAATTACTTG+AGG + chr4.4:41152954-41152973 MS.gene30530:CDS 30.0%
TGACAGCAAAAGTTTCTATT+TGG + chr4.4:41154981-41155000 MS.gene30530:CDS 30.0%
TTAAGGAGCCAATGTAAAAA+TGG - chr4.4:41153188-41153207 None:intergenic 30.0%
TTAGTATTAACACTCTCTAG+AGG - chr4.4:41155078-41155097 None:intergenic 30.0%
TTAGTTGTGTCGTATATCTT+AGG - chr4.4:41154089-41154108 None:intergenic 30.0%
TTATAAAACCTCCCATGTTA+TGG - chr4.4:41154786-41154805 None:intergenic 30.0%
TTTCATGGAGATTTATCTGT+TGG + chr4.4:41155273-41155292 MS.gene30530:CDS 30.0%
TTTGAACAATACACGTAGTA+TGG - chr4.4:41154277-41154296 None:intergenic 30.0%
! AAAACTGTGTTTTGCATTGT+TGG - chr4.4:41154883-41154902 None:intergenic 30.0%
! GAGACAGACAATTTTGTAAA+AGG + chr4.4:41154028-41154047 MS.gene30530:intron 30.0%
! GTTTTCAATACCATTATGTC+TGG + chr4.4:41154898-41154917 MS.gene30530:CDS 30.0%
! TTGTACTTTTGTCTTCTACA+AGG - chr4.4:41154193-41154212 None:intergenic 30.0%
! TTGTGCTTCATTTTCAAAGA+TGG + chr4.4:41154614-41154633 MS.gene30530:intron 30.0%
!! TACATGTTAAATAGTGGACA+AGG + chr4.4:41152872-41152891 MS.gene30530:CDS 30.0%
!!! ATTTTGAAACAGTTGTGCTA+TGG + chr4.4:41153547-41153566 MS.gene30530:intron 30.0%
AAAATGGAGAATGCATGCAA+TGG + chr4.4:41155126-41155145 MS.gene30530:CDS 35.0%
AAATAGAGCTGATCATGATG+AGG + chr4.4:41155239-41155258 MS.gene30530:CDS 35.0%
ATAGATTTCACCTCTTGATG+TGG - chr4.4:41153500-41153519 None:intergenic 35.0%
ATCCATTTACATTCCCTTCT+TGG + chr4.4:41153025-41153044 MS.gene30530:CDS 35.0%
ATCTAGGTAGAAAAGTGAAG+TGG - chr4.4:41153059-41153078 None:intergenic 35.0%
ATGATATGTTCTTCTTCCTG+TGG - chr4.4:41153007-41153026 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG - chr4.4:41154661-41154680 None:intergenic 35.0%
CCATGTTATGGTCTTTGTTA+GGG - chr4.4:41154774-41154793 None:intergenic 35.0%
CCTAACAAAGACCATAACAT+GGG + chr4.4:41154772-41154791 MS.gene30530:CDS 35.0%
GAAAAAGTTGTAGGCTAAGA+TGG + chr4.4:41152939-41152958 MS.gene30530:CDS 35.0%
GAGATTTATCTGTTGGAGAT+TGG + chr4.4:41155280-41155299 MS.gene30530:CDS 35.0%
GAGGTGGAGAATTTATTTCA+TGG + chr4.4:41155258-41155277 MS.gene30530:CDS 35.0%
TAGATTTCACCTCTTGATGT+GGG - chr4.4:41153499-41153518 None:intergenic 35.0%
TCAAAGATGGTCTCAAATTG+CGG + chr4.4:41154627-41154646 MS.gene30530:intron 35.0%
TTCCAAGAAGGGAATGTAAA+TGG - chr4.4:41153030-41153049 None:intergenic 35.0%
! AATACCATTATGTCTGGTTC+TGG + chr4.4:41154904-41154923 MS.gene30530:CDS 35.0%
!! ATACCATTATGTCTGGTTCT+GGG + chr4.4:41154905-41154924 MS.gene30530:CDS 35.0%
!! GGAGATGAAGTATTGAACAT+AGG - chr4.4:41154853-41154872 None:intergenic 35.0%
!! TAAATAGTGGACAAGGTTGT+TGG + chr4.4:41152879-41152898 MS.gene30530:CDS 35.0%
AACAAAGACCATAACATGGG+AGG + chr4.4:41154775-41154794 MS.gene30530:CDS 40.0%
AATGCATGCAATGGAGAAGA+TGG + chr4.4:41155135-41155154 MS.gene30530:CDS 40.0%
AATGCTGGATTGCAAAGATG+TGG + chr4.4:41152917-41152936 MS.gene30530:CDS 40.0%
ACGAGAGGAAATAGGTCTAA+AGG + chr4.4:41154471-41154490 MS.gene30530:intron 40.0%
AGTGATGTTGCTAGAAATGC+TGG + chr4.4:41152902-41152921 MS.gene30530:CDS 40.0%
ATAAGCTTCTCATCTTCCTC+TGG - chr4.4:41152848-41152867 None:intergenic 40.0%
ATCTGTTGGAGATTGGGATT+TGG + chr4.4:41155287-41155306 MS.gene30530:CDS 40.0%
CCCATGTTATGGTCTTTGTT+AGG - chr4.4:41154775-41154794 None:intergenic 40.0%
CCCTAACAAAGACCATAACA+TGG + chr4.4:41154771-41154790 MS.gene30530:CDS 40.0%
TAAGCAGATCAAGACTTGTG+TGG + chr4.4:41153750-41153769 MS.gene30530:intron 40.0%
TACATTCCCTTCTTGGAAAC+AGG + chr4.4:41153032-41153051 MS.gene30530:CDS 40.0%
! AATGCACCACGTTTAAGATC+AGG - chr4.4:41152980-41152999 None:intergenic 40.0%
! ACTGTGTTTTGCATTGTTGG+TGG - chr4.4:41154880-41154899 None:intergenic 40.0%
! GTATTAACACTCTCTAGAGG+AGG - chr4.4:41155075-41155094 None:intergenic 40.0%
! GTGTCGTATATCTTAGGTTG+AGG - chr4.4:41154083-41154102 None:intergenic 40.0%
!! ATAGGTCTAAAGGCATCTAG+CGG + chr4.4:41154481-41154500 MS.gene30530:intron 40.0%
!! TCGTATATCTTAGGTTGAGG+AGG - chr4.4:41154080-41154099 None:intergenic 40.0%
!!! TTTTGCATTGTTGGTGGTGA+TGG - chr4.4:41154874-41154893 None:intergenic 40.0%
!!! TTTTTTCCAGATGCAACCTC+TGG - chr4.4:41152791-41152810 None:intergenic 40.0%
AAAAGGATTGTGGTCACCAG+AGG + chr4.4:41152829-41152848 MS.gene30530:CDS 45.0%
AAGTGGACCTGTTTCCAAGA+AGG - chr4.4:41153042-41153061 None:intergenic 45.0%
ACACCCAGAACCAGACATAA+TGG - chr4.4:41154911-41154930 None:intergenic 45.0%
AGTGGACCTGTTTCCAAGAA+GGG - chr4.4:41153041-41153060 None:intergenic 45.0%
GTTATCTCACCCACATCAAG+AGG + chr4.4:41153487-41153506 MS.gene30530:intron 45.0%
TAGAGCTGATCATGATGAGG+TGG + chr4.4:41155242-41155261 MS.gene30530:CDS 45.0%
TGGTGTAGAAGGAGATGAGA+TGG + chr4.4:41155035-41155054 MS.gene30530:CDS 45.0%
TTGAGGCCTGATCTTAAACG+TGG + chr4.4:41152971-41152990 MS.gene30530:CDS 45.0%
!! ATTATGTCTGGTTCTGGGTG+TGG + chr4.4:41154910-41154929 MS.gene30530:CDS 45.0%
!! ATAATAAGATAAATAAATTA+AGG - chr4.4:41153132-41153151 None:intergenic 5.0%
CTGACAGCGTGTTTGACATC+AGG + chr4.4:41153583-41153602 MS.gene30530:intron 50.0%
CTGATGTCAAACACGCTGTC+AGG - chr4.4:41153585-41153604 None:intergenic 50.0%
GAGGATTCATCGCTTGCGTT+TGG - chr4.4:41154745-41154764 None:intergenic 50.0%
GTCTTTGTTAGGGTCGTACG+AGG - chr4.4:41154764-41154783 None:intergenic 50.0%
ACGTGGTGCATTCTCACCAC+AGG + chr4.4:41152988-41153007 MS.gene30530:CDS 55.0%
AGGAAGCCAGAGGTTGCATC+TGG + chr4.4:41152782-41152801 MS.gene30530:CDS 55.0%
CAAATTGCGGCGCGCTTACC+TGG + chr4.4:41154640-41154659 MS.gene30530:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 41152779 41155362 41152779 ID=MS.gene30530
chr4.4 mRNA 41152779 41155362 41152779 ID=MS.gene30530.t1;Parent=MS.gene30530
chr4.4 exon 41152779 41153053 41152779 ID=MS.gene30530.t1.exon1;Parent=MS.gene30530.t1
chr4.4 CDS 41152779 41153053 41152779 ID=cds.MS.gene30530.t1;Parent=MS.gene30530.t1
chr4.4 exon 41154633 41155362 41154633 ID=MS.gene30530.t1.exon2;Parent=MS.gene30530.t1
chr4.4 CDS 41154633 41155362 41154633 ID=cds.MS.gene30530.t1;Parent=MS.gene30530.t1
Gene Sequence

>MS.gene30530

ATGAGGAAGCCAGAGGTTGCATCTGGAAAAAACACAAACAATAAGCTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTACATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATCCATTTACATTCCCTTCTTGGAAACAGGTCCACTTCACTTTTCTACCTAGATCATCAATTTATTTATCTTATTAGTACCAAATTTGATTCCATATATTGGCTCCTTAATTTATTTATCTTATTATTAGTACCAAATATATCTTAATTTGAGAAGATAACCATTTTTACATTGGCTCCTTAATTCACTATTTAGTGGACATAAAGAGATTTCAACTGTGAACTAATAATAAATATATTACGTATATATTTGTATGCACCAAACATGAGTATGTATAATATGGACCTCAAAAAATGTTTTAAAGATGGACTTGACCAATTTTTAATAAAATGATGAATTTTATAATAATAAAAAAAGGGAAGAGATGTAGTATTTCATTACAATTTATTTAAAAAAATGTAAATATTCACCTTTAGACTATTTTTTAGAATTTATATTTGATACACCATTTTTTTCTCTCAAGTTATCTCACCCACATCAAGAGGTGAAATCTATATTCCCATGAAAAAAATAGCTATGTATATTTTGAAACAGTTGTGCTATGGAAACATAGATTTCCTGACAGCGTGTTTGACATCAGGTCAAATGTATACACAACAATATAGTATATGGTGTCATGTTGTGCAAAATTGTTTCTAAAAAAAATGTTGTAAAAAAATTGTGTTCCTGAATCATTTATGATATAGAAAACATAGAATTATCACAAAAAGTCAATAGATACATCATAAGCAGATCAAGACTTGTGTGGTCACAACCAAAGATTTAGATTTTTTAGACAAACTCATAAATTAAAACATGAAAAGGAGAGAAAAAAAGCAATTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGATTGAATTAATTAATGTGCATTTGTGTTGTGTGTGCACCCAAGTGATTTAAATTTGTTGTTGTGATCATGCAAATTATTCTCATAAGCAATAGTGCTTCCATTTAGAGAGACAGACAATTTTGTAAAAGGAAGTCTTTTTGTGTCAAAATTTAAGTCCTCCTCAACCTAAGATATACGACACAACTAATTCAAAGTTAAAAAATACATGCACAACATGCATCAAATATAATAATATTATTATTAATATATGTATATGATCAAGACAGCTCCTTGTAGAAGACAAAAGTACAATTGAAAACAACATATAGGCACTGTGATTTCGTCTTTATTTGGACTTCGAGTTGAAGACACTCCATACTACGTGTATTGTTCAAAAAAGACTAATTAACTTTCATGCAAAGCATGCATTCAATTTCAGTTTTAAAAAATTGACAGAAATTAATTAATAAACATATATGTAGTCATATATACTCAAGACAACTCTATTTACTGTCTATTTCATAAATGGTATTTTTTTTTATAAACAAAATTTATTAACTAAATAGTATTACGAGAGGAAATAGGTCTAAAGGCATCTAGCGGCACAGTTTGTTGTTTGTTTGCCTTCTATTCATGTATAATCTTTGCTATTTTAAAAAGAAAATTATTTTTGTGCTATATATATTTATGAATTATTAAGCAAACATATTAAATTGTGCTTCATTTTCAAAGATGGTCTCAAATTGCGGCGCGCTTACCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCACCAAACGCAAGCGATGAATCCTCGTACGACCCTAACAAAGACCATAACATGGGAGGTTTTATAAGTTCTTCAACACAAGATCAACAACATATTGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAATACCATTATGTCTGGTTCTGGGTGTGGATTCTTCAATAATAGTACTACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAAATGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGAGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATACTAATAGTACTATTACTTGTGAACATAGTGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAAGAGAAGTGAAAATAGAGCTGATCATGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTTGGAGATTGGGATTTGGAAGATTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA

Protein sequence

>MS.gene30530.t1

MRKPEVASGKNTNNKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNMGGFISSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKMFGSVNIINGVEGDEMEIYNVPPLESVNTNSTITCEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSKRSENRADHDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN