Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31879.t1 | XP_013465160.1 | 94.1 | 222 | 1 | 2 | 1 | 211 | 40 | 260 | 2.90E-115 | 424.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31879.t1 | O49459 | 81.6 | 179 | 21 | 2 | 2 | 168 | 51 | 229 | 8.1e-82 | 304.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31879.t1 | A0A072VM12 | 94.1 | 222 | 1 | 2 | 1 | 211 | 40 | 260 | 2.1e-115 | 424.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene31879.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene31879 | 0.840467 | 8.55E-58 | -1.69E-46 |
MS.gene049501 | MS.gene31879 | 0.812904 | 3.35E-51 | -1.69E-46 |
MS.gene050303 | MS.gene31879 | 0.801163 | 1.02E-48 | -1.69E-46 |
MS.gene050376 | MS.gene31879 | 0.812527 | 4.05E-51 | -1.69E-46 |
MS.gene050438 | MS.gene31879 | 0.810541 | 1.10E-50 | -1.69E-46 |
MS.gene050586 | MS.gene31879 | 0.806553 | 7.78E-50 | -1.69E-46 |
MS.gene050807 | MS.gene31879 | 0.843407 | 1.43E-58 | -1.69E-46 |
MS.gene050808 | MS.gene31879 | 0.80834 | 3.25E-50 | -1.69E-46 |
MS.gene050815 | MS.gene31879 | 0.831489 | 1.62E-55 | -1.69E-46 |
MS.gene050844 | MS.gene31879 | 0.80465 | 1.95E-49 | -1.69E-46 |
MS.gene051247 | MS.gene31879 | 0.803376 | 3.59E-49 | -1.69E-46 |
MS.gene051265 | MS.gene31879 | 0.81427 | 1.68E-51 | -1.69E-46 |
MS.gene051328 | MS.gene31879 | 0.803595 | 3.23E-49 | -1.69E-46 |
MS.gene051388 | MS.gene31879 | 0.844347 | 8.00E-59 | -1.69E-46 |
MS.gene051719 | MS.gene31879 | 0.812246 | 4.67E-51 | -1.69E-46 |
MS.gene052020 | MS.gene31879 | 0.830546 | 2.76E-55 | -1.69E-46 |
MS.gene052611 | MS.gene31879 | 0.818883 | 1.55E-52 | -1.69E-46 |
MS.gene052665 | MS.gene31879 | 0.823267 | 1.52E-53 | -1.69E-46 |
MS.gene052863 | MS.gene31879 | 0.817583 | 3.06E-52 | -1.69E-46 |
MS.gene052896 | MS.gene31879 | 0.811231 | 7.76E-51 | -1.69E-46 |
MS.gene054472 | MS.gene31879 | 0.813701 | 2.24E-51 | -1.69E-46 |
MS.gene05468 | MS.gene31879 | 0.805978 | 1.03E-49 | -1.69E-46 |
MS.gene055357 | MS.gene31879 | 0.809619 | 1.73E-50 | -1.69E-46 |
MS.gene055465 | MS.gene31879 | 0.807816 | 4.20E-50 | -1.69E-46 |
MS.gene055466 | MS.gene31879 | 0.838127 | 3.46E-57 | -1.69E-46 |
MS.gene055468 | MS.gene31879 | 0.831462 | 1.65E-55 | -1.69E-46 |
MS.gene055580 | MS.gene31879 | -0.803035 | 4.22E-49 | -1.69E-46 |
MS.gene055608 | MS.gene31879 | 0.875198 | 3.72E-68 | -1.69E-46 |
MS.gene055773 | MS.gene31879 | 0.857884 | 1.20E-62 | -1.69E-46 |
MS.gene055818 | MS.gene31879 | 0.8057 | 1.18E-49 | -1.69E-46 |
MS.gene056553 | MS.gene31879 | 0.804865 | 1.76E-49 | -1.69E-46 |
MS.gene058084 | MS.gene31879 | 0.804414 | 2.18E-49 | -1.69E-46 |
MS.gene058168 | MS.gene31879 | 0.827737 | 1.33E-54 | -1.69E-46 |
MS.gene058636 | MS.gene31879 | 0.80203 | 6.81E-49 | -1.69E-46 |
MS.gene058906 | MS.gene31879 | 0.82217 | 2.73E-53 | -1.69E-46 |
MS.gene059842 | MS.gene31879 | 0.828757 | 7.53E-55 | -1.69E-46 |
MS.gene059937 | MS.gene31879 | 0.851304 | 9.68E-61 | -1.69E-46 |
MS.gene060310 | MS.gene31879 | 0.803923 | 2.76E-49 | -1.69E-46 |
MS.gene060316 | MS.gene31879 | 0.814546 | 1.46E-51 | -1.69E-46 |
MS.gene060322 | MS.gene31879 | 0.805889 | 1.07E-49 | -1.69E-46 |
MS.gene060429 | MS.gene31879 | 0.833405 | 5.44E-56 | -1.69E-46 |
MS.gene060803 | MS.gene31879 | 0.805397 | 1.36E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31879.t1 | MTR_2g090735 | 94.144 | 222 | 1 | 2 | 1 | 211 | 40 | 260 | 8.02e-153 | 425 |
MS.gene31879.t1 | MTR_4g078875 | 76.106 | 226 | 37 | 4 | 1 | 211 | 39 | 262 | 1.75e-117 | 335 |
MS.gene31879.t1 | MTR_4g088245 | 69.058 | 223 | 50 | 3 | 2 | 210 | 60 | 277 | 7.25e-105 | 305 |
MS.gene31879.t1 | MTR_2g014680 | 64.865 | 222 | 63 | 3 | 2 | 210 | 45 | 264 | 3.78e-98 | 287 |
MS.gene31879.t1 | MTR_8g069160 | 81.098 | 164 | 20 | 1 | 2 | 154 | 60 | 223 | 1.52e-92 | 271 |
MS.gene31879.t1 | MTR_8g102240 | 74.011 | 177 | 28 | 3 | 9 | 167 | 46 | 222 | 8.15e-86 | 262 |
MS.gene31879.t1 | MTR_8g102240 | 74.011 | 177 | 28 | 3 | 9 | 167 | 46 | 222 | 8.37e-86 | 262 |
MS.gene31879.t1 | MTR_5g053430 | 57.225 | 173 | 62 | 2 | 4 | 165 | 52 | 223 | 2.81e-61 | 197 |
MS.gene31879.t1 | MTR_5g053430 | 57.225 | 173 | 62 | 2 | 4 | 165 | 52 | 223 | 3.81e-61 | 197 |
MS.gene31879.t1 | MTR_1g093680 | 56.977 | 172 | 62 | 2 | 5 | 165 | 53 | 223 | 9.30e-61 | 197 |
MS.gene31879.t1 | MTR_7g033320 | 55.152 | 165 | 62 | 2 | 6 | 158 | 51 | 215 | 3.36e-55 | 183 |
MS.gene31879.t1 | MTR_1g093670 | 48.837 | 172 | 62 | 2 | 5 | 165 | 18 | 174 | 3.93e-44 | 150 |
MS.gene31879.t1 | MTR_4g078895 | 82.353 | 51 | 9 | 0 | 1 | 51 | 28 | 78 | 3.50e-22 | 86.3 |
MS.gene31879.t1 | MTR_2g014700 | 67.568 | 37 | 12 | 0 | 75 | 111 | 44 | 80 | 2.73e-11 | 58.2 |
MS.gene31879.t1 | MTR_1g008740 | 29.353 | 201 | 100 | 9 | 10 | 190 | 13 | 191 | 8.46e-11 | 60.8 |
MS.gene31879.t1 | MTR_1g008740 | 29.353 | 201 | 100 | 9 | 10 | 190 | 27 | 205 | 8.68e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31879.t1 | AT4G28500 | 78.919 | 185 | 27 | 2 | 2 | 174 | 51 | 235 | 4.61e-103 | 300 |
MS.gene31879.t1 | AT1G28470 | 77.143 | 175 | 29 | 1 | 2 | 165 | 69 | 243 | 2.06e-95 | 281 |
MS.gene31879.t1 | AT4G29230 | 73.034 | 178 | 29 | 2 | 9 | 167 | 47 | 224 | 7.84e-87 | 263 |
MS.gene31879.t1 | AT4G29230 | 73.034 | 178 | 29 | 2 | 9 | 167 | 46 | 223 | 4.62e-86 | 263 |
MS.gene31879.t1 | AT4G29230 | 73.034 | 178 | 29 | 2 | 9 | 167 | 47 | 224 | 4.74e-86 | 263 |
MS.gene31879.t1 | AT5G56620 | 70.225 | 178 | 31 | 4 | 9 | 164 | 42 | 219 | 3.32e-82 | 250 |
MS.gene31879.t1 | AT5G56620 | 70.225 | 178 | 31 | 4 | 9 | 164 | 42 | 219 | 3.65e-82 | 250 |
MS.gene31879.t1 | AT5G56620 | 70.225 | 178 | 31 | 4 | 9 | 164 | 42 | 219 | 4.41e-82 | 249 |
MS.gene31879.t1 | AT1G25580 | 56.725 | 171 | 56 | 4 | 4 | 163 | 52 | 215 | 2.67e-57 | 187 |
MS.gene31879.t1 | AT5G14490 | 51.786 | 168 | 67 | 4 | 8 | 163 | 53 | 218 | 6.60e-48 | 159 |
MS.gene31879.t1 | AT5G14490 | 51.786 | 168 | 67 | 4 | 8 | 163 | 53 | 218 | 1.00e-47 | 160 |
MS.gene31879.t1 | AT5G14490 | 51.786 | 168 | 67 | 4 | 8 | 163 | 56 | 221 | 1.11e-47 | 160 |
MS.gene31879.t1 | AT5G14490 | 51.786 | 168 | 67 | 4 | 8 | 163 | 56 | 221 | 1.25e-47 | 160 |
MS.gene31879.t1 | AT3G01600 | 50.909 | 165 | 68 | 3 | 8 | 160 | 53 | 216 | 2.80e-45 | 154 |
MS.gene31879.t1 | AT5G18270 | 31.844 | 179 | 85 | 7 | 3 | 161 | 14 | 175 | 2.13e-11 | 62.4 |
MS.gene31879.t1 | AT5G18270 | 31.844 | 179 | 85 | 7 | 3 | 161 | 14 | 175 | 3.57e-11 | 62.0 |
Find 44 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAGAGATTCTTGAACATT+TGG | 0.312906 | 2.4:-9715518 | MS.gene31879:CDS |
GAAAGCCAGAGAAAACAAAT+TGG | 0.314159 | 2.4:-9715012 | MS.gene31879:CDS |
CACATTGTCTAGGCTGTGTT+TGG | 0.340883 | 2.4:+9714915 | None:intergenic |
AGAGGAGAAAGAAGGAGAAT+TGG | 0.354646 | 2.4:-9714957 | MS.gene31879:CDS |
AATTGACCTGGTAACTTCTC+TGG | 0.367159 | 2.4:+9715400 | None:intergenic |
CATTATTTCCAAGATGGTAT+TGG | 0.373788 | 2.4:+9714981 | None:intergenic |
TATGCAGGTGTCGGCAAAGA+TGG | 0.386728 | 2.4:-9715233 | MS.gene31879:intron |
GAGTTACCTGGATTACCTGC+TGG | 0.403541 | 2.4:-9715562 | MS.gene31879:CDS |
GAAACAAGATGGCATAAAAC+AGG | 0.423381 | 2.4:-9715119 | MS.gene31879:CDS |
GGGATGAACTCATCAATTAA+AGG | 0.427373 | 2.4:+9715460 | None:intergenic |
CCTCTTCATTATTTCCAAGA+TGG | 0.434430 | 2.4:+9714975 | None:intergenic |
GAGTTCATCCCTACTCTTGA+AGG | 0.437508 | 2.4:-9715448 | MS.gene31879:CDS |
CTGTGTTTGGTAGAAAACTT+TGG | 0.443831 | 2.4:+9714928 | None:intergenic |
CCTACTCTTGAAGGAGAGAA+TGG | 0.452976 | 2.4:-9715439 | MS.gene31879:CDS |
AGAGATTCTTGAACATTTGG+AGG | 0.472757 | 2.4:-9715515 | MS.gene31879:CDS |
CCATCGAAAGCATACACAAC+AGG | 0.476509 | 2.4:-9715185 | MS.gene31879:CDS |
TTCACCCCAGCAGGTAATCC+AGG | 0.479471 | 2.4:+9715556 | None:intergenic |
CCATTCTCTCCTTCAAGAGT+AGG | 0.481831 | 2.4:+9715439 | None:intergenic |
GGATCAAACTTCACCCCAGC+AGG | 0.493343 | 2.4:+9715547 | None:intergenic |
GTTATGCACCAATACCATCT+TGG | 0.493624 | 2.4:-9714989 | MS.gene31879:CDS |
TGATCCGACATTTCTTTCAC+AGG | 0.494146 | 2.4:-9715208 | MS.gene31879:CDS |
CATTCTCTCCTTCAAGAGTA+GGG | 0.494352 | 2.4:+9715440 | None:intergenic |
AGTTACCTGGATTACCTGCT+GGG | 0.500946 | 2.4:-9715561 | MS.gene31879:CDS |
AAAGCCAGAGAAAACAAATT+GGG | 0.504516 | 2.4:-9715011 | MS.gene31879:CDS |
GTTAATGAATTATAGGGTGC+TGG | 0.506242 | 2.4:-9715592 | None:intergenic |
CCTGTTGTGTATGCTTTCGA+TGG | 0.507588 | 2.4:+9715185 | None:intergenic |
AATAATGAAGAGGAGAAAGA+AGG | 0.526318 | 2.4:-9714965 | MS.gene31879:CDS |
ATGCAGGTGTCGGCAAAGAT+GGG | 0.533540 | 2.4:-9715232 | MS.gene31879:intron |
TCAAGAATCTCTTGATCAGT+AGG | 0.542994 | 2.4:+9715526 | None:intergenic |
GCTGGAATTCATGAGTTACC+TGG | 0.547070 | 2.4:-9715574 | MS.gene31879:CDS |
ACTCATCCAGAGAAGTTACC+AGG | 0.581252 | 2.4:-9715406 | MS.gene31879:intron |
AATGAACCACCACATTGTCT+AGG | 0.596526 | 2.4:+9714905 | None:intergenic |
TGTAGTTAGTGTAAAGCACA+AGG | 0.598633 | 2.4:+9715044 | None:intergenic |
CAGATGGAAGTGAAACAAGA+TGG | 0.608219 | 2.4:-9715130 | MS.gene31879:CDS |
ATGGCCTGTGAAAGAAATGT+CGG | 0.608865 | 2.4:+9715204 | None:intergenic |
AACATTTGGAGGCAAAAGTG+AGG | 0.622163 | 2.4:-9715504 | MS.gene31879:CDS |
CCATCTTGGAAATAATGAAG+AGG | 0.636615 | 2.4:-9714975 | MS.gene31879:CDS |
AAAGTGCACACAGATGCAGA+TGG | 0.660294 | 2.4:-9715146 | MS.gene31879:CDS |
GGCATAAAACAGGTAAAACA+AGG | 0.665333 | 2.4:-9715109 | MS.gene31879:CDS |
CAAACACAGCCTAGACAATG+TGG | 0.666262 | 2.4:-9714914 | MS.gene31879:CDS |
ACACAGCCTAGACAATGTGG+TGG | 0.735435 | 2.4:-9714911 | MS.gene31879:CDS |
TCAAGGTGTGAATCATGAGG+TGG | 0.742861 | 2.4:-9714837 | MS.gene31879:CDS |
TGATCAAGGTGTGAATCATG+AGG | 0.746754 | 2.4:-9714840 | MS.gene31879:CDS |
GTTACCTGGATTACCTGCTG+GGG | 0.752999 | 2.4:-9715560 | MS.gene31879:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATTTGG+TGG | + | chr2.4:9714981-9715000 | None:intergenic | 10.0% |
!! | GGCATATATATATATATATT+TGG | + | chr2.4:9714984-9715003 | None:intergenic | 15.0% |
!!! | TTTTCTGATAAAAAACTAAA+TGG | - | chr2.4:9715488-9715507 | MS.gene31879:CDS | 15.0% |
!! | CTATGAAAGAATAAAAGAAA+TGG | + | chr2.4:9715021-9715040 | None:intergenic | 20.0% |
!! | GAAATGGAAAGTAAATTATA+AGG | + | chr2.4:9715005-9715024 | None:intergenic | 20.0% |
! | AAAAAACTAAATGGTGATCA+AGG | - | chr2.4:9715497-9715516 | MS.gene31879:CDS | 25.0% |
! | CACAAAAACTGTCATTATAT+AGG | + | chr2.4:9715073-9715092 | None:intergenic | 25.0% |
!! | ATATTTTACGTCTAATATGC+AGG | - | chr2.4:9715103-9715122 | MS.gene31879:intron | 25.0% |
!! | CTTTCATATCTTTTGATCAA+GGG | - | chr2.4:9715579-9715598 | MS.gene31879:CDS | 25.0% |
!! | TCTTTCATATCTTTTGATCA+AGG | - | chr2.4:9715578-9715597 | MS.gene31879:CDS | 25.0% |
AAAGCCAGAGAAAACAAATT+GGG | - | chr2.4:9715340-9715359 | MS.gene31879:intron | 30.0% | |
AATAATGAAGAGGAGAAAGA+AGG | - | chr2.4:9715386-9715405 | MS.gene31879:intron | 30.0% | |
CATTATTTCCAAGATGGTAT+TGG | + | chr2.4:9715373-9715392 | None:intergenic | 30.0% | |
GTGGTTAATCATAAAAACAG+TGG | - | chr2.4:9715533-9715552 | MS.gene31879:CDS | 30.0% | |
TCAAGAGATTCTTGAACATT+TGG | - | chr2.4:9714833-9714852 | MS.gene31879:CDS | 30.0% | |
!! | ATAACCCAATTTGTTTTCTC+TGG | + | chr2.4:9715347-9715366 | None:intergenic | 30.0% |
AGAGATTCTTGAACATTTGG+AGG | - | chr2.4:9714836-9714855 | MS.gene31879:CDS | 35.0% | |
CCATCTTGGAAATAATGAAG+AGG | - | chr2.4:9715376-9715395 | MS.gene31879:intron | 35.0% | |
CCTCTTCATTATTTCCAAGA+TGG | + | chr2.4:9715379-9715398 | None:intergenic | 35.0% | |
CTGTGTTTGGTAGAAAACTT+TGG | + | chr2.4:9715426-9715445 | None:intergenic | 35.0% | |
GAAACAAGATGGCATAAAAC+AGG | - | chr2.4:9715232-9715251 | MS.gene31879:intron | 35.0% | |
GAAAGCCAGAGAAAACAAAT+TGG | - | chr2.4:9715339-9715358 | MS.gene31879:intron | 35.0% | |
GGCATAAAACAGGTAAAACA+AGG | - | chr2.4:9715242-9715261 | MS.gene31879:intron | 35.0% | |
GGGATGAACTCATCAATTAA+AGG | + | chr2.4:9714894-9714913 | None:intergenic | 35.0% | |
TCAAGAATCTCTTGATCAGT+AGG | + | chr2.4:9714828-9714847 | None:intergenic | 35.0% | |
TGTAGTTAGTGTAAAGCACA+AGG | + | chr2.4:9715310-9715329 | None:intergenic | 35.0% | |
AACATTTGGAGGCAAAAGTG+AGG | - | chr2.4:9714847-9714866 | MS.gene31879:CDS | 40.0% | |
AATGAACCACCACATTGTCT+AGG | + | chr2.4:9715449-9715468 | None:intergenic | 40.0% | |
AATTGACCTGGTAACTTCTC+TGG | + | chr2.4:9714954-9714973 | None:intergenic | 40.0% | |
AGAGGAGAAAGAAGGAGAAT+TGG | - | chr2.4:9715394-9715413 | MS.gene31879:intron | 40.0% | |
ATGGCCTGTGAAAGAAATGT+CGG | + | chr2.4:9715150-9715169 | None:intergenic | 40.0% | |
CAGATGGAAGTGAAACAAGA+TGG | - | chr2.4:9715221-9715240 | MS.gene31879:CDS | 40.0% | |
CATTCTCTCCTTCAAGAGTA+GGG | + | chr2.4:9714914-9714933 | None:intergenic | 40.0% | |
GTTATGCACCAATACCATCT+TGG | - | chr2.4:9715362-9715381 | MS.gene31879:intron | 40.0% | |
TACGTCTAATATGCAGGTGT+CGG | - | chr2.4:9715109-9715128 | MS.gene31879:CDS | 40.0% | |
TCGTGAGTGGCAAGTTTAAA+AGG | - | chr2.4:9715272-9715291 | MS.gene31879:intron | 40.0% | |
TGATCAAGGTGTGAATCATG+AGG | - | chr2.4:9715511-9715530 | MS.gene31879:CDS | 40.0% | |
TGATCCGACATTTCTTTCAC+AGG | - | chr2.4:9715143-9715162 | MS.gene31879:CDS | 40.0% | |
! | TTTGGTGGCTTAAATTGACC+TGG | + | chr2.4:9714966-9714985 | None:intergenic | 40.0% |
AAAGTGCACACAGATGCAGA+TGG | - | chr2.4:9715205-9715224 | MS.gene31879:CDS | 45.0% | |
AACTTGCCACTCACGAAAAC+TGG | + | chr2.4:9715268-9715287 | None:intergenic | 45.0% | |
ACTCATCCAGAGAAGTTACC+AGG | - | chr2.4:9714945-9714964 | MS.gene31879:CDS | 45.0% | |
AGTTACCTGGATTACCTGCT+GGG | - | chr2.4:9714790-9714809 | MS.gene31879:CDS | 45.0% | |
CAAACACAGCCTAGACAATG+TGG | - | chr2.4:9715437-9715456 | MS.gene31879:CDS | 45.0% | |
CACATTGTCTAGGCTGTGTT+TGG | + | chr2.4:9715439-9715458 | None:intergenic | 45.0% | |
CCATTCTCTCCTTCAAGAGT+AGG | + | chr2.4:9714915-9714934 | None:intergenic | 45.0% | |
CCTACTCTTGAAGGAGAGAA+TGG | - | chr2.4:9714912-9714931 | MS.gene31879:CDS | 45.0% | |
CCTGTTGTGTATGCTTTCGA+TGG | + | chr2.4:9715169-9715188 | None:intergenic | 45.0% | |
GAGTTCATCCCTACTCTTGA+AGG | - | chr2.4:9714903-9714922 | MS.gene31879:CDS | 45.0% | |
GCTGGAATTCATGAGTTACC+TGG | - | chr2.4:9714777-9714796 | MS.gene31879:CDS | 45.0% | |
TCAAGGTGTGAATCATGAGG+TGG | - | chr2.4:9715514-9715533 | MS.gene31879:CDS | 45.0% | |
! | CCATCGAAAGCATACACAAC+AGG | - | chr2.4:9715166-9715185 | MS.gene31879:CDS | 45.0% |
ACACAGCCTAGACAATGTGG+TGG | - | chr2.4:9715440-9715459 | MS.gene31879:CDS | 50.0% | |
GAGTTACCTGGATTACCTGC+TGG | - | chr2.4:9714789-9714808 | MS.gene31879:CDS | 50.0% | |
GTTACCTGGATTACCTGCTG+GGG | - | chr2.4:9714791-9714810 | MS.gene31879:CDS | 50.0% | |
! | ACAAGGCCAGTTTTCGTGAG+TGG | - | chr2.4:9715259-9715278 | MS.gene31879:intron | 50.0% |
!! | ATGCAGGTGTCGGCAAAGAT+GGG | - | chr2.4:9715119-9715138 | MS.gene31879:CDS | 50.0% |
!! | TATGCAGGTGTCGGCAAAGA+TGG | - | chr2.4:9715118-9715137 | MS.gene31879:CDS | 50.0% |
GGATCAAACTTCACCCCAGC+AGG | + | chr2.4:9714807-9714826 | None:intergenic | 55.0% | |
TTCACCCCAGCAGGTAATCC+AGG | + | chr2.4:9714798-9714817 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 9714774 | 9715599 | 9714774 | ID=MS.gene31879 |
chr2.4 | mRNA | 9714774 | 9715599 | 9714774 | ID=MS.gene31879.t1;Parent=MS.gene31879 |
chr2.4 | exon | 9715407 | 9715599 | 9715407 | ID=MS.gene31879.t1.exon1;Parent=MS.gene31879.t1 |
chr2.4 | CDS | 9715407 | 9715599 | 9715407 | ID=cds.MS.gene31879.t1;Parent=MS.gene31879.t1 |
chr2.4 | exon | 9715106 | 9715248 | 9715106 | ID=MS.gene31879.t1.exon2;Parent=MS.gene31879.t1 |
chr2.4 | CDS | 9715106 | 9715248 | 9715106 | ID=cds.MS.gene31879.t1;Parent=MS.gene31879.t1 |
chr2.4 | exon | 9714774 | 9715071 | 9714774 | ID=MS.gene31879.t1.exon3;Parent=MS.gene31879.t1 |
chr2.4 | CDS | 9714774 | 9715071 | 9714774 | ID=cds.MS.gene31879.t1;Parent=MS.gene31879.t1 |
Gene Sequence |
Protein sequence |