Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056128.t1 | XP_013448435.1 | 98.6 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 8.10E-245 | 855.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056128.t1 | G0S8F1 | 26.9 | 297 | 211 | 2 | 140 | 436 | 64 | 354 | 6.1e-31 | 136.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056128.t1 | A0A072TYG1 | 98.6 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 5.9e-245 | 855.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049491 | MS.gene056128 | 0.806352 | 8.58E-50 | -1.69E-46 |
MS.gene050301 | MS.gene056128 | 0.806983 | 6.31E-50 | -1.69E-46 |
MS.gene052188 | MS.gene056128 | 0.802211 | 6.25E-49 | -1.69E-46 |
MS.gene056128 | MS.gene058660 | 0.805533 | 1.28E-49 | -1.69E-46 |
MS.gene056128 | MS.gene05907 | 0.810868 | 9.31E-51 | -1.69E-46 |
MS.gene056128 | MS.gene059597 | 0.839312 | 1.71E-57 | -1.69E-46 |
MS.gene056128 | MS.gene063074 | 0.813034 | 3.14E-51 | -1.69E-46 |
MS.gene056128 | MS.gene067414 | 0.806497 | 7.99E-50 | -1.69E-46 |
MS.gene056128 | MS.gene073925 | 0.807841 | 4.15E-50 | -1.69E-46 |
MS.gene056128 | MS.gene07619 | 0.809781 | 1.60E-50 | -1.69E-46 |
MS.gene056128 | MS.gene23002 | 0.810005 | 1.43E-50 | -1.69E-46 |
MS.gene056128 | MS.gene24695 | 0.800106 | 1.68E-48 | -1.69E-46 |
MS.gene056128 | MS.gene24730 | 0.810532 | 1.10E-50 | -1.69E-46 |
MS.gene056128 | MS.gene48662 | 0.811066 | 8.43E-51 | -1.69E-46 |
MS.gene056128 | MS.gene59730 | 0.817141 | 3.85E-52 | -1.69E-46 |
MS.gene056128 | MS.gene68963 | 0.803736 | 3.02E-49 | -1.69E-46 |
MS.gene056128 | MS.gene68967 | 0.800402 | 1.47E-48 | -1.69E-46 |
MS.gene056128 | MS.gene68968 | 0.801743 | 7.80E-49 | -1.69E-46 |
MS.gene056128 | MS.gene71456 | 0.816387 | 5.68E-52 | -1.69E-46 |
MS.gene056128 | MS.gene72242 | 0.8335 | 5.15E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056128.t1 | MTR_7g450930 | 98.624 | 436 | 6 | 0 | 1 | 436 | 1 | 436 | 0.0 | 886 |
MS.gene056128.t1 | MTR_7g450930 | 98.783 | 411 | 5 | 0 | 1 | 411 | 1 | 411 | 0.0 | 838 |
MS.gene056128.t1 | MTR_7g450930 | 99.140 | 349 | 3 | 0 | 88 | 436 | 1 | 349 | 0.0 | 712 |
MS.gene056128.t1 | MTR_8g018150 | 28.387 | 310 | 195 | 5 | 136 | 428 | 62 | 361 | 2.01e-31 | 127 |
MS.gene056128.t1 | MTR_2g078050 | 28.344 | 314 | 182 | 7 | 136 | 432 | 62 | 349 | 7.39e-28 | 116 |
MS.gene056128.t1 | MTR_2g078050 | 31.111 | 225 | 135 | 5 | 225 | 432 | 15 | 236 | 1.68e-25 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056128.t1 | AT1G80770 | 61.148 | 453 | 153 | 4 | 1 | 436 | 1 | 447 | 0.0 | 554 |
MS.gene056128.t1 | AT1G80770 | 65.441 | 408 | 136 | 2 | 33 | 436 | 25 | 431 | 0.0 | 552 |
MS.gene056128.t1 | AT1G80770 | 65.757 | 403 | 133 | 2 | 38 | 436 | 23 | 424 | 0.0 | 551 |
MS.gene056128.t1 | AT1G80770 | 57.971 | 483 | 151 | 5 | 1 | 436 | 1 | 478 | 0.0 | 541 |
MS.gene056128.t1 | AT1G80770 | 61.644 | 438 | 134 | 3 | 33 | 436 | 25 | 462 | 0.0 | 539 |
MS.gene056128.t1 | AT1G80770 | 70.085 | 351 | 105 | 0 | 86 | 436 | 1 | 351 | 0.0 | 521 |
MS.gene056128.t1 | AT1G50920 | 28.620 | 297 | 191 | 4 | 136 | 420 | 62 | 349 | 6.90e-32 | 129 |
MS.gene056128.t1 | AT1G10300 | 28.671 | 286 | 183 | 5 | 136 | 409 | 91 | 367 | 6.27e-30 | 123 |
MS.gene056128.t1 | AT1G10300 | 28.671 | 286 | 183 | 5 | 136 | 409 | 91 | 367 | 6.27e-30 | 123 |
MS.gene056128.t1 | AT1G10300 | 28.671 | 286 | 183 | 5 | 136 | 409 | 62 | 338 | 9.42e-30 | 122 |
Find 104 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTGCTTGCATCTTTGATTT+TGG | 0.170256 | 7.3:-54912598 | None:intergenic |
TGTAGATGACAGAAATAATT+TGG | 0.178593 | 7.3:+54908897 | MS.gene056128:intron |
TTGTATGTTCACGACCTTTC+AGG | 0.198145 | 7.3:+54908964 | MS.gene056128:CDS |
GGCAATGCCTGTAATAAATT+TGG | 0.207955 | 7.3:+54906943 | MS.gene056128:CDS |
GTGAAATTGAAGAAGGAAAA+TGG | 0.213923 | 7.3:-54902348 | None:intergenic |
AAAGGTTTGATGGACATTTA+TGG | 0.216829 | 7.3:+54911414 | MS.gene056128:CDS |
TCATGTCTCTTCAGCAGGCC+TGG | 0.268893 | 7.3:-54908099 | None:intergenic |
ATGCCATCTATTGACATTCT+AGG | 0.284093 | 7.3:+54905404 | MS.gene056128:CDS |
CACAACAAGAGGAATTCTTA+TGG | 0.298220 | 7.3:+54907935 | MS.gene056128:CDS |
AAAATAATTGAAGAGAGTTT+TGG | 0.305605 | 7.3:+54906661 | MS.gene056128:CDS |
GGTGTTTCCAAATTTATTAC+AGG | 0.308018 | 7.3:-54906950 | None:intergenic |
TCTAGGGTCAGCACTGAAAA+AGG | 0.334046 | 7.3:+54905421 | MS.gene056128:CDS |
GAATGTAGGCAAATCTTCTT+TGG | 0.335232 | 7.3:+54906997 | MS.gene056128:CDS |
CTCCATCGGGACCTGATTTA+CGG | 0.346680 | 7.3:-54911532 | None:intergenic |
CATGTCTCTTCAGCAGGCCT+GGG | 0.368844 | 7.3:-54908098 | None:intergenic |
TTTCATTTCTCTAGTTCTCT+TGG | 0.371426 | 7.3:-54912623 | None:intergenic |
AGGTAGATGGTTTGAGGAAG+AGG | 0.372406 | 7.3:+54906073 | MS.gene056128:CDS |
ACAGATTCAAATGTTCTAGA+TGG | 0.381437 | 7.3:-54905353 | None:intergenic |
AAGAAGATTTGCCTACATTC+GGG | 0.392966 | 7.3:-54906994 | None:intergenic |
ACAACAAGAGGAATTCTTAT+GGG | 0.393660 | 7.3:+54907936 | MS.gene056128:CDS |
TTGGTCCATGTACTTTCTAC+TGG | 0.394006 | 7.3:+54907016 | MS.gene056128:CDS |
ATTTACCTTTGGGGTTTGTA+AGG | 0.396806 | 7.3:-54902372 | None:intergenic |
GAAATCAAAGAAAGGTTTGA+TGG | 0.401199 | 7.3:+54911404 | MS.gene056128:CDS |
AAAGAAGATTTGCCTACATT+CGG | 0.415022 | 7.3:-54906995 | None:intergenic |
TCAATAGATGGCATCACTAT+AGG | 0.418432 | 7.3:-54905395 | None:intergenic |
TGAAATTGAAGAAGGAAAAT+GGG | 0.431688 | 7.3:-54902347 | None:intergenic |
CGTCCTCAACAGATCAGCTT+TGG | 0.434760 | 7.3:-54911450 | None:intergenic |
TGGGACCTCACCTTCTGATC+AGG | 0.436948 | 7.3:+54908993 | MS.gene056128:CDS |
GACCCTAGAATGTCAATAGA+TGG | 0.438834 | 7.3:-54905407 | None:intergenic |
CTGGAGAAGTACCGTAAATC+AGG | 0.439528 | 7.3:+54911521 | MS.gene056128:CDS |
TCTAGAACATTTGAATCTGT+TGG | 0.443912 | 7.3:+54905356 | MS.gene056128:CDS |
AGGAAGAGGGTAGTATCTGT+TGG | 0.458638 | 7.3:+54906087 | MS.gene056128:CDS |
AGTTCTTATGAAGTTGCTAA+AGG | 0.462507 | 7.3:+54902564 | MS.gene056128:CDS |
TGTATGTTCACGACCTTTCA+GGG | 0.467049 | 7.3:+54908965 | MS.gene056128:CDS |
AAAATTGTTCAACAGGTGCT+AGG | 0.470751 | 7.3:+54906048 | MS.gene056128:intron |
GTAAGGAGTGAAATTGAAGA+AGG | 0.481657 | 7.3:-54902355 | None:intergenic |
TTCTCCACATACGTCCTCAA+TGG | 0.483689 | 7.3:-54905758 | None:intergenic |
ACACCAACTCTCTGCCTAGT+TGG | 0.489352 | 7.3:+54906968 | MS.gene056128:CDS |
TACCGTCATGTCTCTTCAGC+AGG | 0.493865 | 7.3:-54908104 | None:intergenic |
TCAATAAGAGACCTTTCATA+AGG | 0.495639 | 7.3:-54905806 | None:intergenic |
TCTCTTATTGAGCTGACACT+TGG | 0.498101 | 7.3:+54905818 | MS.gene056128:CDS |
TATCTGCTCCAAAGTGGGAG+TGG | 0.498123 | 7.3:-54902598 | None:intergenic |
TTACGTTCCCACTCCCACTT+TGG | 0.501562 | 7.3:+54902590 | MS.gene056128:CDS |
ATTGAGCTGACACTTGGAGA+TGG | 0.506096 | 7.3:+54905824 | MS.gene056128:CDS |
TGATCTCACACAGCATGAGC+TGG | 0.510177 | 7.3:+54911502 | MS.gene056128:CDS |
CTACATTCGGGGCTCCAACT+AGG | 0.511057 | 7.3:-54906982 | None:intergenic |
TGCCATCTATTGACATTCTA+GGG | 0.512234 | 7.3:+54905405 | MS.gene056128:CDS |
GGTAGATGGTTTGAGGAAGA+GGG | 0.514183 | 7.3:+54906074 | MS.gene056128:CDS |
TCTTCTGTTGCATATATCAC+AGG | 0.517721 | 7.3:-54911476 | None:intergenic |
ACATGCTTCACTTTGCGCTA+AGG | 0.518181 | 7.3:+54906116 | MS.gene056128:CDS |
CACGACCTTTCAGGGGAATG+TGG | 0.520127 | 7.3:+54908973 | MS.gene056128:CDS |
TGGAGATGGGTATTATGAAA+AGG | 0.522681 | 7.3:+54905838 | MS.gene056128:CDS |
AAGAATTCCTCTTGTTGTGA+AGG | 0.524407 | 7.3:-54907931 | None:intergenic |
AACTATCCCTTCACAACAAG+AGG | 0.525070 | 7.3:+54907924 | MS.gene056128:CDS |
TTGAGCTGACACTTGGAGAT+GGG | 0.526328 | 7.3:+54905825 | MS.gene056128:CDS |
TAGGGCAGGTAGATGGTTTG+AGG | 0.528308 | 7.3:+54906067 | MS.gene056128:CDS |
GATAAAAGAGAATAATATCA+TGG | 0.533268 | 7.3:+54902617 | MS.gene056128:CDS |
AGATACATTAATAGCTCCAT+CGG | 0.535793 | 7.3:-54911546 | None:intergenic |
ATCTGCTCCAAAGTGGGAGT+GGG | 0.536193 | 7.3:-54902597 | None:intergenic |
TTTCCAAAGCTGATCTGTTG+AGG | 0.537570 | 7.3:+54911447 | MS.gene056128:CDS |
CTAGTTGGAGCCCCGAATGT+AGG | 0.540827 | 7.3:+54906983 | MS.gene056128:CDS |
CAGGTGCTAGGGCAGGTAGA+TGG | 0.542855 | 7.3:+54906060 | MS.gene056128:intron |
AGGAGGATATCTGCAACAAA+AGG | 0.546311 | 7.3:+54905446 | MS.gene056128:CDS |
TGTTCAACAGGTGCTAGGGC+AGG | 0.547074 | 7.3:+54906053 | MS.gene056128:intron |
AGAATTCCTCTTGTTGTGAA+GGG | 0.550811 | 7.3:-54907930 | None:intergenic |
AGGAACTTGCTGTTCCATTG+AGG | 0.552433 | 7.3:+54905744 | MS.gene056128:intron |
TGTTAACCTGAAACTTCTGA+TGG | 0.556557 | 7.3:-54907974 | None:intergenic |
GAATACTCTTACAGAAGCAT+AGG | 0.557348 | 7.3:-54902536 | None:intergenic |
GAGGGTAGTATCTGTTGGAA+AGG | 0.557463 | 7.3:+54906092 | MS.gene056128:CDS |
TATACAAAGAAATCAAAGAA+AGG | 0.558797 | 7.3:+54911396 | MS.gene056128:CDS |
CGAGCTTCTCAATTTGCAGA+TGG | 0.560718 | 7.3:+54912575 | MS.gene056128:CDS |
AAATTGTTCAACAGGTGCTA+GGG | 0.565816 | 7.3:+54906049 | MS.gene056128:intron |
GAGACCTTTCATAAGGATGA+AGG | 0.566289 | 7.3:-54905799 | None:intergenic |
TTTGACAAAGCGAGAAGCAG+AGG | 0.567198 | 7.3:+54906542 | MS.gene056128:CDS |
GCTTGCCAGTAGAAAGTACA+TGG | 0.573526 | 7.3:-54907021 | None:intergenic |
CACACCTTCATCCTTATGAA+AGG | 0.582707 | 7.3:+54905795 | MS.gene056128:CDS |
AGGTCCCACATTCCCCTGAA+AGG | 0.587812 | 7.3:-54908978 | None:intergenic |
TACCGTAAATCAGGTCCCGA+TGG | 0.588439 | 7.3:+54911530 | MS.gene056128:CDS |
TAGAAGCACACCTGATCAGA+AGG | 0.592069 | 7.3:-54909003 | None:intergenic |
ACGACCTTTCAGGGGAATGT+GGG | 0.594559 | 7.3:+54908974 | MS.gene056128:CDS |
TGAACATACAAAACTGCTGT+TGG | 0.598167 | 7.3:-54908952 | None:intergenic |
TCGGAAGAAATTTACCTTTG+GGG | 0.598944 | 7.3:-54902381 | None:intergenic |
CTTCTGTTGCATATATCACA+GGG | 0.599403 | 7.3:-54911475 | None:intergenic |
GATAAATGTTTCAGACTCTG+AGG | 0.603580 | 7.3:+54906921 | MS.gene056128:intron |
CTCTTACAGAAGCATAGGTG+TGG | 0.608309 | 7.3:-54902531 | None:intergenic |
GATACATTAATAGCTCCATC+GGG | 0.610936 | 7.3:-54911545 | None:intergenic |
CGATTTGTTAAATATAGCGA+AGG | 0.611431 | 7.3:+54906705 | MS.gene056128:CDS |
TGTTCCATTGAGGACGTATG+TGG | 0.612795 | 7.3:+54905754 | MS.gene056128:CDS |
GTATCTGTGACAACAGAGGA+AGG | 0.627008 | 7.3:+54911563 | MS.gene056128:CDS |
AGAAGATTTGCCTACATTCG+GGG | 0.634945 | 7.3:-54906993 | None:intergenic |
ATAAATGTTTCAGACTCTGA+GGG | 0.637253 | 7.3:+54906922 | MS.gene056128:intron |
ATGTCTCTTCAGCAGGCCTG+GGG | 0.642348 | 7.3:-54908097 | None:intergenic |
TCACTCCTTACAAACCCCAA+AGG | 0.644873 | 7.3:+54902367 | MS.gene056128:CDS |
GCTCCAACTAGGCAGAGAGT+TGG | 0.649107 | 7.3:-54906971 | None:intergenic |
GTATGTTCACGACCTTTCAG+GGG | 0.650446 | 7.3:+54908966 | MS.gene056128:CDS |
GCACACCTGATCAGAAGGTG+AGG | 0.652956 | 7.3:-54908998 | None:intergenic |
TTGTAGGTAACGGATACCCC+AGG | 0.653392 | 7.3:+54908081 | MS.gene056128:intron |
AGCAGAGGAAAGATTGACCG+AGG | 0.653647 | 7.3:+54906557 | MS.gene056128:CDS |
AACAGAGGAAGGAATACATG+AGG | 0.672547 | 7.3:+54911574 | MS.gene056128:CDS |
GGCCTGCTGAAGAGACATGA+CGG | 0.673056 | 7.3:+54908102 | MS.gene056128:CDS |
TAATGTATCTGTGACAACAG+AGG | 0.673897 | 7.3:+54911559 | MS.gene056128:CDS |
ACTTTCTACTGGCAAGCCTG+AGG | 0.680092 | 7.3:+54907027 | MS.gene056128:CDS |
CTGCTGTTGGTAGATGTGAA+AGG | 0.682866 | 7.3:-54908939 | None:intergenic |
TTCTGTTGCATATATCACAG+GGG | 0.765634 | 7.3:-54911474 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 54902316 | 54912635 | 54902316 | ID=MS.gene056128 |
chr7.3 | mRNA | 54902316 | 54912635 | 54902316 | ID=MS.gene056128.t1;Parent=MS.gene056128 |
chr7.3 | exon | 54902316 | 54902388 | 54902316 | ID=MS.gene056128.t1.exon1;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54902316 | 54902388 | 54902316 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54902508 | 54902638 | 54902508 | ID=MS.gene056128.t1.exon2;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54902508 | 54902638 | 54902508 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54905347 | 54905467 | 54905347 | ID=MS.gene056128.t1.exon3;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54905347 | 54905467 | 54905347 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54905564 | 54905628 | 54905564 | ID=MS.gene056128.t1.exon4;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54905564 | 54905628 | 54905564 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54905746 | 54905859 | 54905746 | ID=MS.gene056128.t1.exon5;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54905746 | 54905859 | 54905746 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54906063 | 54906137 | 54906063 | ID=MS.gene056128.t1.exon6;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54906063 | 54906137 | 54906063 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54906540 | 54906578 | 54906540 | ID=MS.gene056128.t1.exon7;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54906540 | 54906578 | 54906540 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54906655 | 54906726 | 54906655 | ID=MS.gene056128.t1.exon8;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54906655 | 54906726 | 54906655 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54906935 | 54907048 | 54906935 | ID=MS.gene056128.t1.exon9;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54906935 | 54907048 | 54906935 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54907918 | 54907989 | 54907918 | ID=MS.gene056128.t1.exon10;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54907918 | 54907989 | 54907918 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54908087 | 54908123 | 54908087 | ID=MS.gene056128.t1.exon11;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54908087 | 54908123 | 54908087 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54908902 | 54909014 | 54908902 | ID=MS.gene056128.t1.exon12;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54908902 | 54909014 | 54908902 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54911389 | 54911595 | 54911389 | ID=MS.gene056128.t1.exon13;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54911389 | 54911595 | 54911389 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
chr7.3 | exon | 54912558 | 54912635 | 54912558 | ID=MS.gene056128.t1.exon14;Parent=MS.gene056128.t1 |
chr7.3 | CDS | 54912558 | 54912635 | 54912558 | ID=cds.MS.gene056128.t1;Parent=MS.gene056128.t1 |
Gene Sequence |
Protein sequence |