AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067414


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067414.t1 MTR_2g104030 98.633 439 6 0 11 449 58 496 0.0 887
MS.gene067414.t1 MTR_3g087030 51.194 377 168 5 3 378 67 428 1.21e-126 374
MS.gene067414.t1 MTR_6g471050 47.273 385 195 3 49 432 7 384 3.97e-120 358
MS.gene067414.t1 MTR_5g065160 35.561 374 218 7 11 376 64 422 2.26e-59 201
MS.gene067414.t1 MTR_5g065160 35.467 375 218 7 11 376 64 423 2.82e-59 201
MS.gene067414.t1 MTR_5g065160 35.467 375 218 7 11 376 57 416 4.18e-59 201
MS.gene067414.t1 MTR_5g065160 35.467 375 218 7 11 376 64 423 5.79e-59 201
MS.gene067414.t1 MTR_4g023470 35.613 351 208 6 24 372 87 421 2.46e-58 198
MS.gene067414.t1 MTR_3g027580 32.240 366 209 8 21 375 87 424 2.82e-55 190
MS.gene067414.t1 MTR_8g006430 34.571 350 204 9 21 361 12 345 2.88e-51 179
MS.gene067414.t1 MTR_4g023490 31.250 400 236 12 9 394 4 378 3.27e-47 167
MS.gene067414.t1 MTR_2g087660 29.945 364 229 9 21 375 11 357 5.36e-33 129
MS.gene067414.t1 MTR_4g050420 30.027 373 232 10 21 384 11 363 3.54e-31 124
MS.gene067414.t1 MTR_2g087660 31.962 316 195 8 21 333 11 309 1.15e-29 118
MS.gene067414.t1 MTR_7g109340 27.671 365 207 11 15 369 19 336 1.94e-28 115
MS.gene067414.t1 MTR_4g078850 27.778 378 213 12 23 377 4 344 1.04e-24 104
MS.gene067414.t1 MTR_2g014470 48.624 109 40 3 23 115 4 112 4.68e-21 94.4
MS.gene067414.t1 MTR_2g090705 42.609 115 44 3 23 115 4 118 1.56e-17 84.0
MS.gene067414.t1 MTR_2g014480 56.000 75 31 1 23 95 4 78 1.69e-17 84.0
MS.gene067414.t1 MTR_7g069480 54.286 70 32 0 19 88 23 92 3.84e-17 84.3
MS.gene067414.t1 MTR_3g108020 41.818 110 58 2 23 126 4 113 1.10e-16 81.3
MS.gene067414.t1 MTR_4g015840 42.727 110 46 3 23 115 4 113 2.91e-16 80.1
MS.gene067414.t1 MTR_2g436560 43.137 102 52 1 22 117 103 204 4.28e-16 79.7
MS.gene067414.t1 MTR_7g085600 53.968 63 29 0 23 85 54 116 2.18e-15 77.0
MS.gene067414.t1 MTR_6g027030 45.349 86 36 2 23 102 2 82 2.78e-14 72.4
MS.gene067414.t1 MTR_6g027110 45.349 86 36 2 23 102 2 82 3.62e-14 70.1
MS.gene067414.t1 MTR_2g436580 50.794 63 31 0 23 85 110 172 4.31e-14 72.0
MS.gene067414.t1 MTR_7g101070 55.385 65 27 1 23 85 358 422 8.16e-14 73.6
MS.gene067414.t1 MTR_3g437850 32.075 159 66 4 23 139 2 160 1.67e-13 68.6
MS.gene067414.t1 MTR_5g004570 38.889 108 62 3 22 125 5 112 2.22e-13 70.1
MS.gene067414.t1 MTR_6g026940 45.588 68 31 1 23 84 2 69 2.90e-13 68.6
MS.gene067414.t1 MTR_5g037880 39.806 103 53 2 21 114 3 105 4.05e-13 70.1
MS.gene067414.t1 MTR_2g097690 50.000 70 34 1 25 94 77 145 2.21e-12 66.2
MS.gene067414.t1 MTR_8g081620 39.744 78 44 1 17 91 54 131 4.67e-12 65.1
MS.gene067414.t1 MTR_5g035770 48.611 72 36 1 23 93 25 96 4.73e-12 67.8
MS.gene067414.t1 MTR_1g110310 48.571 70 35 1 19 87 12 81 5.12e-12 67.8
MS.gene067414.t1 MTR_5g012530 40.741 81 44 1 23 99 12 92 5.35e-12 68.2
MS.gene067414.t1 MTR_5g022130 34.783 115 46 2 25 136 73 161 6.34e-12 64.3
MS.gene067414.t1 MTR_5g022180 45.070 71 36 1 18 85 66 136 8.45e-12 63.9
MS.gene067414.t1 MTR_5g022210 49.231 65 30 1 24 85 73 137 8.48e-12 63.9
MS.gene067414.t1 MTR_2g097690 50.000 70 34 1 25 94 77 145 9.12e-12 65.9
MS.gene067414.t1 MTR_7g069480 47.143 70 31 1 19 88 23 86 1.53e-11 66.6
MS.gene067414.t1 MTR_3g437360 47.297 74 37 1 21 92 3 76 1.55e-11 65.9
MS.gene067414.t1 MTR_5g065860 42.667 75 42 1 14 87 39 113 1.71e-11 62.4
MS.gene067414.t1 MTR_8g075780 43.478 92 38 3 8 85 21 112 2.23e-11 62.0
MS.gene067414.t1 MTR_8g037810 41.935 93 46 2 24 115 7 92 2.64e-11 65.1
MS.gene067414.t1 MTR_1g029470 37.755 98 53 2 22 118 5 95 2.77e-11 65.5
MS.gene067414.t1 MTR_4g109510 38.462 104 56 2 24 122 9 109 2.93e-11 65.9
MS.gene067414.t1 MTR_1g029460 38.542 96 56 2 23 115 6 101 4.39e-11 64.7
MS.gene067414.t1 MTR_1g052110 50.000 66 28 2 25 87 40 103 5.63e-11 63.5
MS.gene067414.t1 MTR_1g105540 41.429 70 41 0 15 84 27 96 6.10e-11 63.5
MS.gene067414.t1 MTR_7g112360 43.939 66 32 2 24 84 17 82 6.53e-11 61.2
MS.gene067414.t1 MTR_7g112360 43.939 66 32 2 24 84 17 82 8.38e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067414.t1 AT1G80030 75.286 437 107 1 13 449 65 500 0.0 667
MS.gene067414.t1 AT1G80030 75.286 437 107 1 13 449 65 500 0.0 667
MS.gene067414.t1 AT1G80030 75.286 437 107 1 13 449 65 500 0.0 667
MS.gene067414.t1 AT1G80030 74.941 423 105 1 13 435 65 486 0.0 640
MS.gene067414.t1 AT2G22360 53.627 386 165 6 6 388 68 442 3.52e-135 396
MS.gene067414.t1 AT4G39960 54.596 359 160 3 20 378 82 437 1.64e-130 384
MS.gene067414.t1 AT4G39960 54.596 359 160 3 20 378 82 437 1.64e-130 384
MS.gene067414.t1 AT3G17830 50.811 370 172 3 12 375 52 417 5.75e-126 375
MS.gene067414.t1 AT5G48030 35.772 369 209 6 18 376 89 439 2.93e-67 222
MS.gene067414.t1 AT1G28210 33.973 365 210 7 19 376 44 384 2.48e-58 197
MS.gene067414.t1 AT1G28210 33.973 365 210 7 19 376 44 384 2.93e-58 197
MS.gene067414.t1 AT1G28210 33.973 365 210 7 19 376 44 384 5.98e-58 197
MS.gene067414.t1 AT5G22060 31.768 362 221 11 21 373 12 356 9.61e-43 156
MS.gene067414.t1 AT3G44110 31.452 372 226 10 21 383 12 363 1.31e-37 142
MS.gene067414.t1 AT3G44110 31.657 338 204 9 21 349 12 331 1.36e-34 132
MS.gene067414.t1 AT3G62600 28.150 373 209 13 15 375 19 344 2.54e-28 115
MS.gene067414.t1 AT5G01390 25.594 379 210 10 23 377 4 334 3.53e-22 97.4
MS.gene067414.t1 AT2G20560 44.144 111 44 3 23 115 4 114 5.47e-19 88.2
MS.gene067414.t1 AT5G25530 43.902 123 59 3 23 135 4 126 6.03e-19 88.2
MS.gene067414.t1 AT5G01390 36.313 179 82 8 23 180 4 171 8.84e-19 85.9
MS.gene067414.t1 AT4G28480 46.535 101 37 2 23 106 4 104 2.45e-18 85.5
MS.gene067414.t1 AT4G28480 46.535 101 37 2 23 106 4 104 3.74e-18 85.9
MS.gene067414.t1 AT5G01390 40.000 135 57 5 23 136 4 135 2.16e-17 82.4
MS.gene067414.t1 AT5G01390 39.844 128 56 4 23 129 4 131 5.52e-17 80.5
MS.gene067414.t1 AT1G59725 41.228 114 46 2 23 115 4 117 8.71e-17 81.6
MS.gene067414.t1 AT3G08910 53.425 73 32 1 23 93 4 76 1.75e-16 80.5
MS.gene067414.t1 AT5G25530 41.221 131 59 4 23 135 4 134 1.99e-16 80.9
MS.gene067414.t1 AT1G10350 37.500 120 54 3 23 121 4 123 4.75e-16 79.7
MS.gene067414.t1 AT3G08970 52.857 70 33 0 19 88 23 92 5.48e-16 80.9
MS.gene067414.t1 AT3G08970 52.857 70 33 0 19 88 23 92 5.48e-16 80.9
MS.gene067414.t1 AT1G59980 52.941 68 31 1 25 91 25 92 7.18e-15 76.3
MS.gene067414.t1 AT3G47940 52.703 74 32 1 23 93 4 77 1.01e-14 75.9
MS.gene067414.t1 AT1G59980 52.941 68 31 1 25 91 25 92 1.15e-14 75.9
MS.gene067414.t1 AT2G41000 45.055 91 40 2 23 107 3 89 2.03e-14 72.4
MS.gene067414.t1 AT2G41000 45.055 91 40 2 23 107 3 89 3.82e-14 71.2
MS.gene067414.t1 AT4G39150 43.299 97 52 2 22 115 5 101 1.19e-13 72.4
MS.gene067414.t1 AT4G39150 43.299 97 52 2 22 115 5 101 1.19e-13 72.4
MS.gene067414.t1 AT4G39150 43.299 97 52 2 22 115 5 101 1.19e-13 72.4
MS.gene067414.t1 AT5G59610 48.193 83 41 1 3 83 51 133 1.21e-13 71.2
MS.gene067414.t1 AT5G59610 48.193 83 41 1 3 83 51 133 1.41e-13 71.2
MS.gene067414.t1 AT5G59610 48.193 83 41 1 3 83 51 133 1.41e-13 71.2
MS.gene067414.t1 AT4G13830 45.455 77 39 1 24 97 67 143 1.57e-13 69.3
MS.gene067414.t1 AT5G59610 48.193 83 41 1 3 83 51 133 1.62e-13 70.9
MS.gene067414.t1 AT5G59610 48.193 83 41 1 3 83 51 133 1.62e-13 70.9
MS.gene067414.t1 AT4G13830 45.455 77 39 1 24 97 67 143 1.72e-13 68.6
MS.gene067414.t1 AT4G13830 45.455 77 39 1 24 97 67 143 4.99e-13 68.2
MS.gene067414.t1 AT2G17880 46.479 71 35 1 18 85 63 133 8.47e-13 66.6
MS.gene067414.t1 AT5G18140 42.353 85 44 1 6 85 55 139 1.92e-12 68.6
MS.gene067414.t1 AT5G03160 49.231 65 31 1 23 85 370 434 2.11e-12 69.3
MS.gene067414.t1 AT5G49060 44.776 67 37 0 21 87 97 163 2.90e-12 68.2
MS.gene067414.t1 AT5G49060 44.776 67 37 0 21 87 97 163 2.90e-12 68.2
MS.gene067414.t1 AT1G56300 44.118 68 33 2 22 84 12 79 2.90e-12 63.9
MS.gene067414.t1 AT2G21510 40.000 95 49 2 22 115 5 92 4.15e-12 67.8
MS.gene067414.t1 AT2G21510 40.000 95 49 2 22 115 5 92 4.15e-12 67.8
MS.gene067414.t1 AT2G21510 40.206 97 55 2 22 115 5 101 4.25e-12 67.4
MS.gene067414.t1 AT2G21510 40.000 95 49 2 22 115 5 92 4.87e-12 67.4
MS.gene067414.t1 AT2G21510 40.000 95 49 2 22 115 5 92 4.87e-12 67.4
MS.gene067414.t1 AT1G24120 40.217 92 44 2 23 103 20 111 5.57e-12 67.8
MS.gene067414.t1 AT2G35720 38.043 92 44 2 8 95 9 91 8.32e-12 67.8
MS.gene067414.t1 AT4G36040 45.570 79 36 2 11 85 56 131 8.39e-12 63.9
MS.gene067414.t1 AT1G76700 37.963 108 63 3 22 125 5 112 9.70e-12 67.0
MS.gene067414.t1 AT1G56300 44.118 68 33 2 22 84 12 79 1.13e-11 63.2
MS.gene067414.t1 AT1G68370 50.000 66 32 1 23 87 17 82 2.15e-11 65.9
MS.gene067414.t1 AT5G06910 33.333 123 67 3 25 143 31 142 5.48e-11 63.5

Find 128 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGCCAGTGGCGGATT+TGG 0.198517 2.4:+1579945 None:intergenic
TCCCCGTCACCTCCACAATT+TGG 0.228947 2.4:+1575944 None:intergenic
GTCCTTCCCCGCTGCATTTA+CGG 0.238343 2.4:+1575903 None:intergenic
ATATCATCTCTTTGAATTCC+TGG 0.264263 2.4:+1574417 None:intergenic
CAGTTATCTAGAAGCTATAC+TGG 0.269288 2.4:-1574370 MS.gene067414:CDS
GTAGAAAAGCCGCCCATATT+TGG 0.287462 2.4:+1577660 None:intergenic
AGGACCGAACAAACACCTTT+TGG 0.304659 2.4:-1576770 MS.gene067414:CDS
CAGAAGATGAAGATGACTTA+TGG 0.309685 2.4:-1572919 MS.gene067414:CDS
AGGAATCACATGTTTCTAAA+TGG 0.312535 2.4:+1576867 None:intergenic
ACTCATTACCTAATACGTTT+TGG 0.325668 2.4:+1573395 None:intergenic
TTACAATACCAAAACGTATT+AGG 0.326918 2.4:-1573403 MS.gene067414:intron
TGCAGGACTTTCCTTACTTC+CGG 0.333362 2.4:+1572994 None:intergenic
GACTGTTGCTGTTGGACTTT+CGG 0.337289 2.4:+1572961 None:intergenic
TCTTTGCCAGTGGCGGATTT+GGG 0.337889 2.4:+1579946 None:intergenic
ACCATGGATCCATCTGGATT+TGG 0.361587 2.4:-1577639 MS.gene067414:CDS
TCTTCATCTTCTGATTTCTC+TGG 0.365886 2.4:+1572929 None:intergenic
CACTTGTGGTGGCAGGGGTC+AGG 0.367313 2.4:-1576798 MS.gene067414:CDS
ATTGACGGTCTGTTTAATTT+CGG 0.379497 2.4:+1573455 None:intergenic
GCGTCGTAGTACTGTTACTA+AGG 0.387946 2.4:-1577610 MS.gene067414:CDS
CCAGGTTCCTTGTTCACATC+AGG 0.394472 2.4:+1578843 None:intergenic
TATGTTCCACTTGTGGTGGC+AGG 0.411064 2.4:-1576805 MS.gene067414:CDS
CTTTCGGCCATTTGAACTGC+AGG 0.427687 2.4:+1572977 None:intergenic
TTATCGAAGGTTAGCTCGTC+AGG 0.429324 2.4:-1579911 MS.gene067414:intron
AATGTCTCAAATAAATCAAA+TGG 0.435939 2.4:+1577690 None:intergenic
AAAACAGTGAGAAAGCGTTT+TGG 0.436675 2.4:+1580006 None:intergenic
ATACTGGAAGGTTGGGTCCT+AGG 0.439597 2.4:+1573198 None:intergenic
ATCTTCTGCAGCCGGAAGTA+AGG 0.441699 2.4:-1573005 MS.gene067414:intron
GTGGCAGGGGTCAGGTGATG+AGG 0.444359 2.4:-1576790 MS.gene067414:CDS
GTCACTGGAGAGGGTGATGC+TGG 0.445023 2.4:-1575812 MS.gene067414:CDS
AGGGCTTTGTATGATCAATA+TGG 0.453668 2.4:-1578019 MS.gene067414:CDS
ATCCATCTGGATTTGGCACT+CGG 0.456163 2.4:-1577632 MS.gene067414:CDS
GAAACATGTGATTCCTGTAC+TGG 0.461147 2.4:-1576860 MS.gene067414:CDS
TAACTTTAACAGTAAATAAG+TGG 0.462609 2.4:+1573423 None:intergenic
TCTGATTATTACTCTACTCT+CGG 0.463407 2.4:-1579973 MS.gene067414:CDS
ATTAAAGTTAAAGTTCCTCC+TGG 0.464056 2.4:-1575860 MS.gene067414:CDS
CCTGATGTGAACAAGGAACC+TGG 0.464650 2.4:-1578843 MS.gene067414:CDS
ATCCCTGCTGGTACCCAACC+TGG 0.472089 2.4:-1573509 MS.gene067414:CDS
GGAAAGTCCTGCAGTTCAAA+TGG 0.473444 2.4:-1572984 MS.gene067414:CDS
GAACAACATACTGGAAGGTT+GGG 0.475958 2.4:+1573191 None:intergenic
TTAAACTTGTCAGTTGCCCC+AGG 0.477510 2.4:+1578825 None:intergenic
ATGTTCCACTTGTGGTGGCA+GGG 0.478649 2.4:-1576804 MS.gene067414:CDS
CAACCCAAAAGGTGTTTGTT+CGG 0.479856 2.4:+1576766 None:intergenic
GTCCAAATTGTGGAGGTGAC+GGG 0.481641 2.4:-1575946 MS.gene067414:CDS
TATGATCAATATGGCGAGGC+AGG 0.483288 2.4:-1578010 MS.gene067414:CDS
GGAAGGTTGGGTCCTAGGAC+GGG 0.483676 2.4:+1573203 None:intergenic
ACTTGCAGGTCTGTAGCAAA+TGG 0.488248 2.4:-1572365 MS.gene067414:intron
GACGAGGACATCTCCAGGTT+GGG 0.493540 2.4:+1573496 None:intergenic
AGATATACGTAAAGATCTCC+TGG 0.494601 2.4:+1574456 None:intergenic
AGTGGAACATACTCTCATCT+TGG 0.494603 2.4:+1576817 None:intergenic
TGCCGTAAATGCAGCGGGGA+AGG 0.495126 2.4:-1575905 MS.gene067414:CDS
TTAAAGTTAAAGTTCCTCCT+GGG 0.497675 2.4:-1575859 MS.gene067414:CDS
CTTGAAGAACTTGCTTCTCT+AGG 0.500953 2.4:-1573249 MS.gene067414:CDS
TGTCATAACAGGGGTCCTCC+AGG 0.502320 2.4:-1574474 MS.gene067414:intron
TTACTAAGGGTGAAGACATT+CGG 0.504661 2.4:-1577596 MS.gene067414:intron
TGTTCCACTTGTGGTGGCAG+GGG 0.505072 2.4:-1576803 MS.gene067414:CDS
AGAACAACATACTGGAAGGT+TGG 0.505747 2.4:+1573190 None:intergenic
AAAGTTGCCGTAAATGCAGC+GGG 0.507133 2.4:-1575910 MS.gene067414:CDS
CTGACCCCTGCCACCACAAG+TGG 0.507884 2.4:+1576799 None:intergenic
ACTGGTACTGGTGCAAAGTT+AGG 0.508899 2.4:-1576842 MS.gene067414:CDS
AAACAGGTAAAGACGGTTGA+AGG 0.509765 2.4:-1573548 MS.gene067414:intron
GTCATTCAAAATCCCGTCCT+AGG 0.511575 2.4:-1573215 MS.gene067414:CDS
GGCGTTCCCAAATCCGCCAC+TGG 0.513056 2.4:-1579952 MS.gene067414:CDS
AATTTGTATACATACCTCAT+AGG 0.514093 2.4:+1578788 None:intergenic
CTTGATGTGCTTGAGATACC+AGG 0.514132 2.4:-1574435 MS.gene067414:CDS
GGCTTTGATTTCTTTGCCAG+TGG 0.518865 2.4:+1579936 None:intergenic
GCAGCGGGGAAGGACGCATA+CGG 0.519290 2.4:-1575895 MS.gene067414:CDS
TGTGATTCCTGTACTGGTAC+TGG 0.520706 2.4:-1576854 MS.gene067414:CDS
ACCTGTGAGAACAACCCAAA+AGG 0.520884 2.4:+1576755 None:intergenic
TGTCCAAATTGTGGAGGTGA+CGG 0.521211 2.4:-1575947 MS.gene067414:CDS
TGGAAGGTTGGGTCCTAGGA+CGG 0.521812 2.4:+1573202 None:intergenic
ACTTTGCATCTTCAGTTCAA+AGG 0.523338 2.4:-1573283 MS.gene067414:intron
CAACAGGTATGATTTCTCCT+TGG 0.524403 2.4:-1576936 MS.gene067414:intron
TCTCCAGGTTGGGTACCAGC+AGG 0.526854 2.4:+1573506 None:intergenic
TCGGTACACCCTTCCTTGCA+AGG 0.528930 2.4:+1573474 None:intergenic
TCTCATTCATGCTTCTGTAC+CGG 0.529448 2.4:-1580126 None:intergenic
GTTTCAGTATGTCCAAATTG+TGG 0.531922 2.4:-1575956 MS.gene067414:CDS
ATAAATATAGCATACCCTCT+TGG 0.531985 2.4:+1575788 None:intergenic
TGTCCTCGTCCTTGCAAGGA+AGG 0.532772 2.4:-1573483 MS.gene067414:CDS
CACCCTTCCTTGCAAGGACG+AGG 0.534490 2.4:+1573480 None:intergenic
TTTGATTTCTTTGCCAGTGG+CGG 0.541690 2.4:+1579939 None:intergenic
AGAGATTAGTAATGCCTATG+AGG 0.543434 2.4:-1578802 MS.gene067414:intron
ACGAGCTAACCTTCGATAAG+CGG 0.545760 2.4:+1579915 None:intergenic
CAGCGGGGAAGGACGCATAC+GGG 0.546893 2.4:-1575894 MS.gene067414:CDS
CTTTGCACCAGTACCAGTAC+AGG 0.550230 2.4:+1576847 None:intergenic
AGTTATCTAGAAGCTATACT+GGG 0.550260 2.4:-1574369 MS.gene067414:CDS
AAGTGGTCACCACGTATTGA+CGG 0.551433 2.4:+1573440 None:intergenic
GCAGGAGTTAAGAGTTCAGT+CGG 0.558596 2.4:-1577992 MS.gene067414:CDS
GTTAAGAGTTCAGTCGGAGG+AGG 0.559305 2.4:-1577986 MS.gene067414:CDS
CGCCGAGTGCCAAATCCAGA+TGG 0.559447 2.4:+1577630 None:intergenic
GGACGAGGACATCTCCAGGT+TGG 0.563044 2.4:+1573495 None:intergenic
GTTCCTCCTGGGGTTAGCGC+AGG 0.568793 2.4:-1575848 MS.gene067414:CDS
AAATCAAAGCCGCTTATCGA+AGG 0.571341 2.4:-1579924 MS.gene067414:CDS
CTGATGTGAACAAGGAACCT+GGG 0.573238 2.4:-1578842 MS.gene067414:CDS
TATACTGGGGTCTGTAGTGA+AGG 0.574324 2.4:-1574355 MS.gene067414:intron
TAGCAAATGGAGCTCTAAAG+TGG 0.574327 2.4:-1572352 MS.gene067414:CDS
GCAAGGACGAGGACATCTCC+AGG 0.576440 2.4:+1573491 None:intergenic
GAGATGTCCTCGTCCTTGCA+AGG 0.580447 2.4:-1573487 MS.gene067414:CDS
TCCAAATTGTGGAGGTGACG+GGG 0.583688 2.4:-1575945 MS.gene067414:CDS
GCCAAATCCAGATGGATCCA+TGG 0.590096 2.4:+1577638 None:intergenic
GTCCTCGTCCTTGCAAGGAA+GGG 0.591231 2.4:-1573482 MS.gene067414:CDS
GGAACGGAGATGAATTCCTC+CGG 0.594195 2.4:+1580107 None:intergenic
CTCCAGGTTGGGTACCAGCA+GGG 0.602728 2.4:+1573507 None:intergenic
GGCACTTAAACAGGTAAAGA+CGG 0.603991 2.4:-1573555 MS.gene067414:intron
CGTCGTAGTACTGTTACTAA+GGG 0.604949 2.4:-1577609 MS.gene067414:CDS
ATACTGCCTGCGCTAACCCC+AGG 0.606475 2.4:+1575842 None:intergenic
TCTGAACTACAAATCCCTGC+TGG 0.611504 2.4:-1573521 MS.gene067414:CDS
TAAAGTTAAAGTTCCTCCTG+GGG 0.618796 2.4:-1575858 MS.gene067414:CDS
AAGCATATTGAATACCGCAT+AGG 0.621041 2.4:+1577955 None:intergenic
GTATCATCCTGATGTGAACA+AGG 0.622969 2.4:-1578850 MS.gene067414:CDS
CATTCATGCTTCTGTACCGG+AGG 0.625206 2.4:-1580123 None:intergenic
GAGGGTGATGCTGGACCAAG+AGG 0.629360 2.4:-1575803 MS.gene067414:CDS
CTTCAGTTCAAAGGAGCGTG+AGG 0.643651 2.4:-1573274 MS.gene067414:intron
TCAGTATGTCCAAATTGTGG+AGG 0.645215 2.4:-1575953 MS.gene067414:CDS
AATTGCCTCAGAAAACTCCA+AGG 0.646456 2.4:+1576919 None:intergenic
GAAAGTTGCCGTAAATGCAG+CGG 0.650404 2.4:-1575911 MS.gene067414:CDS
AACTGATTGATATTGTCGAG+CGG 0.658179 2.4:+1574388 None:intergenic
GGAGTTAAGAGTTCAGTCGG+AGG 0.664891 2.4:-1577989 MS.gene067414:CDS
AGAGTATGTTCCACTTGTGG+TGG 0.666541 2.4:-1576809 MS.gene067414:CDS
TGATGTGAACAAGGAACCTG+GGG 0.673343 2.4:-1578841 MS.gene067414:CDS
ATGAGAGTATGTTCCACTTG+TGG 0.676889 2.4:-1576812 MS.gene067414:CDS
TTTGTATGATCAATATGGCG+AGG 0.678449 2.4:-1578014 MS.gene067414:CDS
CTGCCTGCGCTAACCCCAGG+AGG 0.685288 2.4:+1575845 None:intergenic
AGGGTGATGCTGGACCAAGA+GGG 0.687007 2.4:-1575802 MS.gene067414:intron
AGGAGGATCAAGTGCCTATG+CGG 0.690520 2.4:-1577969 MS.gene067414:intron
TTAAACAGACCGTCAATACG+TGG 0.692147 2.4:-1573449 MS.gene067414:CDS
GTTATCTAGAAGCTATACTG+GGG 0.733881 2.4:-1574368 MS.gene067414:CDS
TATACGTAAAGATCTCCTGG+AGG 0.770752 2.4:+1574459 None:intergenic
AAGTTGCCGTAAATGCAGCG+GGG 0.833562 2.4:-1575909 MS.gene067414:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr2.4 gene 1572334 1580140 1572334 ID=MS.gene067414
chr2.4 mRNA 1572334 1580140 1572334 ID=MS.gene067414.t1;Parent=MS.gene067414
chr2.4 exon 1580112 1580140 1580112 ID=MS.gene067414.t1.exon1;Parent=MS.gene067414.t1
chr2.4 CDS 1580112 1580140 1580112 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1579912 1580029 1579912 ID=MS.gene067414.t1.exon2;Parent=MS.gene067414.t1
chr2.4 CDS 1579912 1580029 1579912 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1578803 1578871 1578803 ID=MS.gene067414.t1.exon3;Parent=MS.gene067414.t1
chr2.4 CDS 1578803 1578871 1578803 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1577970 1578062 1577970 ID=MS.gene067414.t1.exon4;Parent=MS.gene067414.t1
chr2.4 CDS 1577970 1578062 1577970 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1577597 1577718 1577597 ID=MS.gene067414.t1.exon5;Parent=MS.gene067414.t1
chr2.4 CDS 1577597 1577718 1577597 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1576757 1576952 1576757 ID=MS.gene067414.t1.exon6;Parent=MS.gene067414.t1
chr2.4 CDS 1576757 1576952 1576757 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1575803 1575978 1575803 ID=MS.gene067414.t1.exon7;Parent=MS.gene067414.t1
chr2.4 CDS 1575803 1575978 1575803 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1574356 1574485 1574356 ID=MS.gene067414.t1.exon8;Parent=MS.gene067414.t1
chr2.4 CDS 1574356 1574485 1574356 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1573404 1573564 1573404 ID=MS.gene067414.t1.exon9;Parent=MS.gene067414.t1
chr2.4 CDS 1573404 1573564 1573404 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1573202 1573290 1573202 ID=MS.gene067414.t1.exon10;Parent=MS.gene067414.t1
chr2.4 CDS 1573202 1573290 1573202 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1572896 1573016 1572896 ID=MS.gene067414.t1.exon11;Parent=MS.gene067414.t1
chr2.4 CDS 1572896 1573016 1572896 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
chr2.4 exon 1572334 1572379 1572334 ID=MS.gene067414.t1.exon12;Parent=MS.gene067414.t1
chr2.4 CDS 1572334 1572379 1572334 ID=cds.MS.gene067414.t1;Parent=MS.gene067414.t1
Gene Sequence

>MS.gene067414

ATGCTTCTGTACCGGAGGAATTCATCTCCGTTCCCACAACAATTTCCTTTCCATTCATCCTTCTCCTTCCACTTTCTCCAACTCTAATACTAAATTCTCTTCTGCTACTAGACCAAAACGCTTTCTCACTGTTTTCGCTGCTTCTTCTGATTATTACTCTACTCTCGGCGTTCCCAAATCCGCCACTGGCAAAGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGGTATCATTCATTCTATTTTCCATTCTTTTCTTTTCTTGTCAACATTAGGATTTATTACTTTGGTTTTTCAATTTTGGATGGGGGAAAATTGATCATATAGATGGGTAGAATTGATTTAGGGTCTGTTTGGCTGGCAAACCACATATTTGAGCTTATTTATAGATGGGTAGAATTGATTTAGGGTCTTTTTTAGTCAAATGAGCTTATAGGACATAAGCTAAAAAACATGCCTTACCAAACAGACCCTAAAAAAGACCCCCATTTGGTTTCACAAGCTTAAAGCTTATTTTACTAGCTTTTAGCGTCCTTTAGTAAGCTAATTCAAGTAGCTTATACGTTATCATTTTTTATCTCAATTTTACCCTTGTAACCTTAACTGAAAGAAAATAAAATATTGATTAAATTTATCTTCTTTATATCATTGCATACTTATAAGCTAGTTCACCGCTAGTTTTACTAAACACTACAAATTCAATATGCTAGCTTATCCGCTATCAGCTACAAGCTAGCTTATCAGTTATCCACTACGAGCTAGGTTATCAATTATTCGCTATTTTTTACCAAACATAGCCTTAGTCTGCAGAGTTGATTCTAACTTGAAGCTAGGATTTGTAGCTTTTGACGCCAAACATGATTTTAACGTTCAAATTTATCATTCAAGTCACTTTTATTTGAATATATCCAAACATAAACCAGTTATGTTTGTTCCACATTTGGAGTGGTCAAAATTGATTATGGAGGTGTAAAACTGATTTTAATTTGTTTGGTTGCTCTCTAGTAGAGTTGCTTCTAACTTGAAGCTATGATCCTTTTAACTCTTAACGTTATTTTTACGCTAAAATTTATCATTCAACTCCCCTTTTATATGAATGTATTCAGACATAAACCATTTTACATTCGACTAACTTTTAACAAAACTCAATTTTATAAAATCAATTCATTCAAAATAAAATTTTGTCAATGCAGAACCAAATAAACACTATTTCAATGCAAACAATCTTACTTGGCATGATTTTTGTGTTTATTTGATTTCTATGCAGTATCATCCTGATGTGAACAAGGAACCTGGGGCAACTGACAAGTTTAAAGAGATTAGTAATGCCTATGAGGTATGTATACAAATTACACCACTCATTGTTCATTGTTATTGTGTTAAGTTTTCTTTATTGGAATTGGAATAGTATGCATCTTTAAGTTTAATATCAATTGCAAAAGTAATCAGCTGAGTTTTTGACTTAGGGTCTCAACTCCTAACTTGTTACCGTTTTTCTTTTCTTCTTCAGCATTGTGGAAAAATTACATTAGAGACACCTAGGCTTTGTCCATTCATTTGACGTTTAAATGGGACCAGTAGTGCTTTAGCTGCTTTTGGCCTGATCTGATGATTTATTTTTTCTTTATCTTTTTTTTCCAATTCCAAGGTTTTCTTACATGCTTGCTTTTAGAACTTTTTCACCCATTATGTTGTGTTTTGTTGCAAAATATGACTGTCAATATGAAACATTTACGTGCTATGAAATATTTGACCAAGTCAAAGGCTAGTAAAGTGCTTCAATTTAAACAAAGAAAACGGCAGATCAAAACAGAAAAAGTCAAGTTTTAAAGCGTAGATAAGCAAAAGTAGCTTAAACCGTTTCTATGTTTTTCTTTCTCTTTCTAATACCGTGTTATAAAGGACTCAACTTCATAAGAAAGTTCTATGGTACTTTTTATTCTTAATTGGATTGATGGAAATGTCTTAAGCTCCTGTTTCATTTTGGAAGATCACAAATCCGTCTTGTAGTAGTATAATTGTTTTAGATTATATTTATGACATTTGCTTCTGAATTCTGAATTATAACACTGTCAGGTGCTATCAGATGACAAAAAGAGGGCTTTGTATGATCAATATGGCGAGGCAGGAGTTAAGAGTTCAGTCGGAGGAGGATCAAGTGCCTATGCGGTATTCAATATGCTTTTTTTGCTTGATTGTTTAGTATGCAAGATTAGTGAGACACACACTTGAAAGAATGATAAAAACTTGCTTGTCAGGAGAATTACAAGTTATTTTACTGATGCTTTAATGTCGCATGTTACCTTCTTTATGGGAAAAAATTGAAATGCATGCCAATTGAAGTTGTCTTTTACCGTCTACCCATTTTTGCTGCTTATGTAAGGTACATTGATATTTAATAAATTTTTTTTTTTTTGCAGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAATATGGGCGGCTTTTCTACCATGGATCCATCTGGATTTGGCACTCGGCGTCGTAGTACTGTTACTAAGGGTGAAGACATTCGGTGAGTTATGATGTGGATAATTGTGTCTTTTTCTTCTAGCCATGTTTGCCAAGGAAATGATTATTATATTTAGCTTCTTAACATAAATGTCTAAAAAGACCTTATTCTAAATTGATTTGTTGAAAATTTAGTTTTCGAATTTCGATAGATCCCAATGGGCAGTGTTTGATCCATGTATCTAATCTCTCCTAGTTGAATAAAGCTTGGTCATTGATTCCTACAGAGGATTTCAAGGAGTAAAGGAAAACCTAGGGAACTTTTTTTAATCAGTTAGAATGATTTTGAACATTTTATACATATCACCAATTTAGACCCCTATTTATTATATGAGTATTAATCTAGGTCAAATACTATAGTACAAATAGTTTAAGCCTTGCTCCAAAATCTAATGCTTTGGTTGGGGGTGGGTGGTGGAAGGATCAGGGGAAATGATTCAACAAGTAACAATTAAGTGACACTCCTATTCTTCCGCATATAACTTTGACAAGAGGAGAATGTAAGCAATAACTTTTCTAAATATTAGCTTATGGTCTGATATTTTGTATATTTAATATAGGCAGTTCAACATATGAAAATTACAGCTTCTGTACTTTTAATAAAAGTTTGCTGTAAATTGAGAAGACTTTTGATTCAAATATCAACAGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTTCCATTTAGAAACATGTGATTCCTGTACTGGTACTGGTGCAAAGTTAGGCTCCAAGATGAGAGTATGTTCCACTTGTGGTGGCAGGGGTCAGGTGATGAGGACCGAACAAACACCTTTTGGGTTGTTCTCACAGGTAATTTGAGTTGTTTTCTTGTTGAGTTCGGATATGATTTTTCTTCTTTATTTTGTATGCTCTGCTAATGTGGAGAATAAGAACTGTGAACTCTTGATAATTGCTACTCGAACTGCATCCTGCTGATGCGACAATCTAGCTCTTTGCTGTATTTCTATTTTGTAATTGATTTCTACTGTGGTTGTTCCTGCAAAAAAAACCCATTTGCTGCATGAAATGACTAGAAGAGATCAGTAAACCACATTCCCGTAATATACGACCATAGTCCTCCAGCCAGAAAGTAAAAATATAAAAAGGGATAAAAGTTAATCTACCATTGAATCATTGAGTTTATTTTGATGAACCGTTCTCTGTAATACCAATATTATTTATTTGTTTTAGATAAAGTCTTTGAAATTGGAGTTCAATCCCATGATAAATACTTGTTGGGATTGTAATTACACAACAGAGTTTGTAATTGGCAACACGAATACAAGGCTATTCCAATTTAGTTTCTACGTTGATCAAACATTCTGCACGCCCCGTTATAATTTTCCTTTTATTTTCATGAATTGTTGACCCCCCAATCCAGACTTTGTAGGAAAACGTTTTGGTTGTTGTTTGCTGGTGGCGTTGACATCCTTATGTTCGACTTTGGGAATAATGATTTATCTTTTCATCAATTGCTTATATTACATCATCAGTTCATCTTCATTTTGTGCAGTTTCCTCACATAAGATAAAAACATTGTACTTTTTCTCTGGTTAAGAGTTTTGCGCTAATCTCTATTCAATGTTAGGTTTCAGTATGTCCAAATTGTGGAGGTGACGGGGAAGTCATATCTGAAAGTTGCCGTAAATGCAGCGGGGAAGGACGCATACGGGTTAAGAAAAATATTAAAGTTAAAGTTCCTCCTGGGGTTAGCGCAGGCAGTATTTTAAGAGTCACTGGAGAGGGTGATGCTGGACCAAGAGGGTATGCTATATTTATATTTATATCTAGTTTTCTTATTGTGAAAGTCTTAGGCCAATTATTGGATAGAAGTTATATTATAAGTTGCGTCTGTATTGCTTTTATTGTACTTATTTACCACATGCCGTATATGTTTCCATGAGTTAGTAAGTTTTCTTACACTTTGATGAAGGAAGAAATACTTCTAAAAGGAAGGAAGGATATTACAAAGTAAAAGAAGGATTAGCATCAATTCTCCTTAATGTAAACTCTTAGAATTTGAGCTTAAAGCCTAACTTAGCCCTACCAAATTAACTTCTAAGGTGAGGGTCATCCAAGCTTTATTAGCACAACCTAGGCCATATCTCTTGTCTATGTGGAACTCTCAACATACTCTTTCACATTTATGACTTGACATCTAAAGCGCGAATTAATATGGGTGGAGTACTAGGGATCTCAACATAAACAAATCTGAGTAAAGTAAAGACATTCTTACCAAAGAGCATTCTAATAATGAATGATCCAGTTCCTGAGCATCTTTAGAAAGGAGACTTCATCCGAAGGGATGAAAAATCCTGTAAGGCAAGTCCAGCTTTCCACGGACAAACGTCCCATCAAAACACGAGCTTAACGATCCAACATAAGACAACAGGAGGGTAGCATACAAAGAATACTGCCTTCAAAGCCTACTCCATATATAAATAGCTAATAGAAAATGTATGGACAGAGATCAACACACCCAACCTAAATTATTCTTCTAATACATCCAATTAAGAGAAATGAATTTTTTTTTGATTTGTTATTAAATTGTTGTCGACCCAAGAGCACTTGGATGAGATGGTAAGGGATCTCTTCCAGCTTAACCAGAGGTCCTGGGTTTGAATCCAAGCTTTGGGATGCAACATTGTTAAATATCTTGAGGGAGGGCTTTGCCACCCATTGCGATCCTACCCGGCTCGAGGAATTAGTCTCTACAGTTGCGCGCAGAGGACACCCGGTTCACACAAAATAAAATGAAATTGCTGTTGACCTTTCTTATTGTTCTGCTCTTCAAGTTTGAATATATCCTCTTTGGAGTCATGGAAAAATGAATTGGACTCAAATATGCATCTACCTTGAGAATTTTAAAAAGGTCAAAAACATTGAGATACTAAAAGTTTTCATTGTTAATTATTTTATCTATGCTAGAAAATTGTATTATTTCTTCTCATGTTCCTTCCCAACAGAGGGCATAATAGTTGTTTGTTGTTATTGAAATGGTTTAGTCATACGCGAATTCAAACCATATCATTGATCAATTACATGATTCAGAAGCAGCTATTGATCTTTTTGTCATAACAGGGGTCCTCCAGGAGATCTTTACGTATATCTTGATGTGCTTGAGATACCAGGAATTCAAAGAGATGATATTAATCTCCGCTCGACAATATCAATCAGTTATCTAGAAGCTATACTGGGGTCTGTAGTGAAGGTAGATTAACGTAGTAATATTATTCATGCTTGAAGCTTGGTTTTTTTGCTTCTTTTTGTAGGCTGGTGTTATGCTTTTAGTACTTTTATTTTCATGAAGGTTTTATTTTGGTCTGTTTTCAATTGCTATAACATCATCCTTGTTTTCTTTGTTATCCTCGAAACCTGGCACCTGGCATGATGTGCCCTAATTTTCTATTCAGATTCTAATTCCTTGATATATTCCCGTTATTTAGATATTAATCTAATCTCTTGATATTTGGGATTTTACTGCGGAATCTGACACTATATTATGTTGGCCCTTGAATGTAACTAGTTGGACAACACTTTGTTTGTTTATGACTAAAACAGTCAACATTATTAGAATGCTCTTTGGTAAGAGCATTCTACTTTTTTGGTAAAATCTTATCAAGAATGGCCCTTGTTTGTTGCAAATATCACACGAAAAAAGTCTACTTTTTTTCTTCTGTTGAAAAACACGTTTGGCTGATAAGATTTTGTATGACTAAAACTGAAAACAGTCTGGCCATTTTTCTTTTATAAACATGTTTGGCCTTTTTCATACTTCGAGATTGTGTTTCATTGTATGCTAAGATTTGATTTTTGTTGAATATATTTTTTCTTATAACTTTTTTTGATATTTGGGTGTCAACACTGATGTGACTTGTTTACTTTTTTTATTTTTGTTGAATATATTTTTTCTTTTAACTTTTTTTTTTTGGGTGTTTAACATTGATGTCACCACCTTGAGGCATTACAATCAACAGCTAACATTTTCCGGCACTTAAACAGGTAAAGACGGTTGAAGGCACTTCTGAACTACAAATCCCTGCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAGGGTGTACCGAAATTAAACAGACCGTCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATTAGGTAATGAGTCATTTTACAGTTTTGATTTTGTTTCTCTGTTACTCCCTCCTGTATATTGCTTTTTTGTCAATATCAGTAGTGTGATCTGAATTGCCTCTACTTTGCATCTTCAGTTCAAAGGAGCGTGAGGTGCTTGAAGAACTTGCTTCTCTAGGCAACCCAAGCAGTCATTCAAAATCCCGTCCTAGGACCCAACCTTCCAGTATGTTGTTCTTTCTCCCCATCTTACAGTCATAGGAACAATTAATATGATGTCTTGAATGTTTCCTATAACATATGATATTTAGTTAGTTCTTCTTAACATACTTGGCTGTTGCACTAGAGAATTGTCACTATTCCACAGTAGACTATAGTTGAATTTTGAACCACTGTATTTATCTTCTGCAGCCGGAAGTAAGGAAAGTCCTGCAGTTCAAATGGCCGAAAGTCCAACAGCAACAGTCACAGAAAAACCAGAGAAATCAGAAGATGAAGATGACTTATGGAATAAACTAAAAAACGTGGCTGGGTAATAATGTTATTGTATTTTGTTTCCTTTTATTTTTATTTTTATAAATGTGTAGCGCAATCAGTTTTCATTAATTGGAAACTTTATCTCTGACTTCAATCACTAATTATGCCAAGCATGACTCTTTTAAAGTGTAAAGTATCAGTTTTGAAACTAAATAAGGGGGTCATAACGATAGATTTTATTTTTTAATCCATGTCCTTTTCCTTATGTACTCAATTGCTATATTCCCAATAAGATCTGATTTTTTGTAAAAGAATATTATTGTCATTGAGTTGATACATCATACCCGAGATTTTTTGTTGGTGATTATTTTCATTGCTGGAAAATAATTGTTCAACAAGAGTAGATGCTATATGCCTTTCATTTATTGTCATTTTATAGGATAAGGTGCCACTTTTTTCGTTTGTTTTAGTCCTATACTATTAGGTTAAAAGTTTTCTCGTTCATCAAACCTTGGTAATTATTTTGTGCATCTGATGAATTGATTAAACCTTACACCACTGAAACTTGCAGGTCTGTAGCAAATGGAGCTCTAAAGTGGTTTAAAGACAATCTCTAG

Protein sequence

>MS.gene067414.t1

MLLYRRNSSPPKRFLTVFAASSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRALYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFGPNMGGFSTMDPSGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELFHLETCDSCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKNIKVKVPPGVSAGSILRVTGEGDAGPRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISISYLEAILGSVVKVKTVEGTSELQIPAGTQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISSKEREVLEELASLGNPSSHSKSRPRTQPSTGSKESPAVQMAESPTATVTEKPEKSEDEDDLWNKLKNVAGSVANGALKWFKDNL