AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073925


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073925.t1 MTR_1g045510 92.568 148 11 0 12 159 138 285 3.75e-101 292
MS.gene073925.t1 MTR_1g045510 32.984 191 89 5 1 154 1 189 2.19e-16 74.3
MS.gene073925.t1 MTR_3g075500 44.966 149 76 2 15 157 137 285 7.83e-39 133
MS.gene073925.t1 MTR_3g075500 40.698 86 51 0 74 159 105 190 3.11e-12 63.2
MS.gene073925.t1 MTR_7g106440 36.994 173 93 2 3 159 121 293 1.96e-36 128
MS.gene073925.t1 MTR_7g106440 36.458 96 58 1 63 155 91 186 8.91e-13 64.7
MS.gene073925.t1 MTR_4g104470 42.405 158 84 2 7 157 138 295 2.18e-36 127
MS.gene073925.t1 MTR_4g104470 44.444 81 45 0 74 154 118 198 7.81e-16 73.2
MS.gene073925.t1 MTR_1g056520 39.881 168 89 2 3 158 120 287 6.34e-36 126
MS.gene073925.t1 MTR_1g056520 39.286 84 47 1 79 158 109 192 4.25e-14 68.6
MS.gene073925.t1 MTR_3g027140 42.069 145 76 1 18 154 91 235 2.06e-33 118
MS.gene073925.t1 MTR_3g027140 36.364 77 49 0 79 155 61 137 8.03e-12 61.2
MS.gene073925.t1 MTR_3g075500 43.939 132 68 2 15 140 137 268 4.58e-32 115
MS.gene073925.t1 MTR_3g075500 40.698 86 51 0 74 159 105 190 2.48e-12 63.2
MS.gene073925.t1 MTR_1g064230 39.130 161 77 2 18 157 115 275 8.04e-31 112
MS.gene073925.t1 MTR_4g070080 42.683 82 47 0 74 155 2 83 7.64e-22 85.5
MS.gene073925.t1 MTR_4g070080 42.683 82 47 0 74 155 2 83 1.79e-21 85.5
MS.gene073925.t1 MTR_7g013740 42.222 90 52 0 66 155 28 117 3.26e-20 81.6
MS.gene073925.t1 MTR_4g070190 40.244 82 49 0 74 155 4 85 9.78e-20 80.9
MS.gene073925.t1 MTR_7g013730 44.737 76 42 0 79 154 41 116 1.22e-18 80.1
MS.gene073925.t1 MTR_4g070140 41.463 82 48 0 74 155 4 85 1.97e-18 78.2
MS.gene073925.t1 MTR_3g084040 46.914 81 42 1 79 159 37 116 3.01e-18 76.6
MS.gene073925.t1 MTR_3g080130 43.421 76 43 0 79 154 37 112 1.07e-17 75.1
MS.gene073925.t1 MTR_5g030020 38.255 149 86 2 15 157 123 271 1.22e-17 78.2
MS.gene073925.t1 MTR_2g097960 31.034 145 97 2 18 159 46 190 2.14e-17 78.2
MS.gene073925.t1 MTR_4g109540 40.260 77 46 0 79 155 43 119 4.33e-16 73.6
MS.gene073925.t1 MTR_4g109540 46.154 52 27 1 18 69 73 123 7.05e-11 59.3
MS.gene073925.t1 MTR_7g105260 42.857 84 46 1 78 159 32 115 1.55e-15 69.3
MS.gene073925.t1 MTR_3g065190 33.333 141 89 2 18 157 56 192 1.68e-15 72.8
MS.gene073925.t1 MTR_3g099590 34.722 144 86 4 19 158 122 261 3.16e-15 71.2
MS.gene073925.t1 MTR_4g131970 30.769 143 96 2 18 157 105 247 3.63e-15 72.0
MS.gene073925.t1 MTR_1g020080 30.345 145 98 2 18 159 128 272 1.69e-14 69.7
MS.gene073925.t1 MTR_4g086600 30.000 150 97 3 18 159 147 296 1.85e-14 70.1
MS.gene073925.t1 MTR_3g025880 40.244 82 47 1 74 155 42 121 2.66e-14 69.7
MS.gene073925.t1 MTR_4g124940 32.727 110 72 1 45 154 100 207 3.07e-14 69.3
MS.gene073925.t1 MTR_3g109090 33.333 111 72 1 44 154 97 205 3.96e-14 68.9
MS.gene073925.t1 MTR_1g020080 30.345 145 98 2 18 159 128 272 4.16e-14 68.9
MS.gene073925.t1 MTR_3g109090 33.333 111 72 1 44 154 113 221 4.32e-14 68.9
MS.gene073925.t1 MTR_3g084040 48.333 60 31 0 79 138 37 96 9.64e-14 63.9
MS.gene073925.t1 MTR_4g109540 35.227 88 57 0 68 155 40 127 1.23e-13 67.0
MS.gene073925.t1 MTR_4g109540 46.154 52 27 1 18 69 81 131 6.32e-11 59.3
MS.gene073925.t1 MTR_8g022050 31.818 110 73 1 45 154 116 223 2.52e-13 66.6
MS.gene073925.t1 MTR_7g102730 28.395 162 102 3 9 157 210 370 3.94e-13 66.2
MS.gene073925.t1 MTR_7g102730 28.289 152 107 2 7 157 117 267 2.43e-12 63.9
MS.gene073925.t1 MTR_1g061870 28.846 156 106 3 6 157 118 272 5.16e-13 65.9
MS.gene073925.t1 MTR_1g061870 27.848 158 104 3 9 157 215 371 1.39e-12 64.7
MS.gene073925.t1 MTR_5g097580 31.169 154 80 4 18 154 37 181 6.41e-13 65.5
MS.gene073925.t1 MTR_1g080150 37.975 79 49 0 73 151 127 205 6.82e-13 64.3
MS.gene073925.t1 MTR_5g097580 31.169 154 80 4 18 154 37 181 6.94e-13 65.5
MS.gene073925.t1 MTR_2g022950 29.677 155 84 4 18 157 91 235 8.21e-13 64.7
MS.gene073925.t1 MTR_1g097280 36.047 86 54 1 74 158 24 109 9.11e-13 65.1
MS.gene073925.t1 MTR_3g082650 27.891 147 95 3 16 158 47 186 1.15e-12 64.7
MS.gene073925.t1 MTR_2g022950 29.677 155 84 4 18 157 91 235 1.62e-12 64.3
MS.gene073925.t1 MTR_2g022950 30.345 145 96 3 18 157 91 235 2.23e-12 63.5
MS.gene073925.t1 MTR_7g118120 32.877 146 83 3 18 159 135 269 3.02e-12 63.5
MS.gene073925.t1 MTR_3g055990 31.126 151 84 4 18 154 37 181 4.62e-12 63.2
MS.gene073925.t1 MTR_3g055990 31.126 151 84 4 18 154 37 181 5.08e-12 63.2
MS.gene073925.t1 MTR_6g004810 26.712 146 96 3 18 159 76 214 7.48e-12 62.4
MS.gene073925.t1 MTR_3g095230 27.815 151 88 3 18 152 246 391 8.27e-12 62.4
MS.gene073925.t1 MTR_3g095230 27.815 151 88 3 18 152 246 391 8.32e-12 62.4
MS.gene073925.t1 MTR_2g026180 29.333 150 90 4 18 154 35 181 8.72e-12 62.4
MS.gene073925.t1 MTR_4g036415 42.667 75 43 0 80 154 453 527 1.12e-11 62.0
MS.gene073925.t1 MTR_4g085540 31.169 154 91 4 17 157 243 394 1.40e-11 61.6
MS.gene073925.t1 MTR_3g101370 29.605 152 91 5 18 159 124 269 1.79e-11 60.8
MS.gene073925.t1 MTR_4g081520 39.759 83 50 0 75 157 48 130 1.90e-11 58.9
MS.gene073925.t1 MTR_3g102040 31.646 158 93 3 14 157 228 384 2.47e-11 61.2
MS.gene073925.t1 MTR_3g101370 29.605 152 91 5 18 159 124 269 3.61e-11 60.5
MS.gene073925.t1 MTR_8g092550 36.250 80 51 0 73 152 298 377 4.12e-11 60.5
MS.gene073925.t1 MTR_6g040190 26.667 135 93 3 18 151 56 185 6.28e-11 60.1
MS.gene073925.t1 MTR_5g017280 30.070 143 89 5 18 157 35 169 6.66e-11 59.7
MS.gene073925.t1 MTR_5g017280 30.070 143 89 5 18 157 35 169 6.99e-11 59.7
MS.gene073925.t1 MTR_4g104450 33.333 102 62 2 30 125 2 103 7.75e-11 56.2
MS.gene073925.t1 MTR_1g019150 28.659 164 91 4 14 157 236 393 9.55e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073925.t1 AT1G60000 73.239 142 37 1 18 158 116 257 2.06e-74 223
MS.gene073925.t1 AT1G60000 36.250 80 51 0 79 158 86 165 2.49e-11 60.5
MS.gene073925.t1 AT5G50250 40.741 162 87 3 4 157 126 286 6.14e-37 128
MS.gene073925.t1 AT5G50250 41.975 81 47 0 74 154 109 189 4.98e-14 68.2
MS.gene073925.t1 AT4G24770 41.401 157 83 3 7 155 166 321 6.68e-36 127
MS.gene073925.t1 AT4G24770 42.391 92 47 1 63 154 141 226 8.69e-15 70.5
MS.gene073925.t1 AT4G24770 53.846 52 24 0 18 69 275 326 4.37e-13 65.9
MS.gene073925.t1 AT4G24770 41.401 157 83 3 7 155 166 321 6.68e-36 127
MS.gene073925.t1 AT4G24770 42.391 92 47 1 63 154 141 226 8.69e-15 70.5
MS.gene073925.t1 AT4G24770 53.846 52 24 0 18 69 275 326 4.37e-13 65.9
MS.gene073925.t1 AT3G52380 38.926 149 79 1 18 154 147 295 8.27e-35 124
MS.gene073925.t1 AT3G52380 41.463 82 48 0 77 158 115 196 5.33e-16 73.9
MS.gene073925.t1 AT2G37220 37.222 180 87 2 4 157 104 283 1.60e-34 122
MS.gene073925.t1 AT2G37220 45.055 91 49 1 62 152 76 165 6.76e-17 75.9
MS.gene073925.t1 AT3G52150 41.497 147 76 1 18 154 107 253 5.47e-34 120
MS.gene073925.t1 AT3G52150 32.609 92 61 1 64 155 63 153 7.77e-13 64.3
MS.gene073925.t1 AT3G52150 41.497 147 76 1 18 154 107 253 5.47e-34 120
MS.gene073925.t1 AT3G52150 32.609 92 61 1 64 155 63 153 7.77e-13 64.3
MS.gene073925.t1 AT2G35410 39.744 156 82 5 16 159 123 278 2.90e-25 98.6
MS.gene073925.t1 AT1G01080 35.762 151 83 3 14 151 136 285 1.71e-24 96.3
MS.gene073925.t1 AT1G01080 36.620 142 76 3 23 151 144 284 1.08e-23 94.4
MS.gene073925.t1 AT1G01080 36.567 134 72 2 24 144 145 278 1.07e-22 91.7
MS.gene073925.t1 AT3G26420 41.975 81 47 0 75 155 4 84 2.65e-19 81.6
MS.gene073925.t1 AT4G39260 39.535 86 52 0 74 159 2 87 6.13e-19 77.0
MS.gene073925.t1 AT3G23830 48.148 81 42 0 79 159 36 116 1.62e-18 77.0
MS.gene073925.t1 AT3G23830 55.319 47 21 0 17 63 65 111 1.94e-12 61.2
MS.gene073925.t1 AT3G23830 48.148 81 42 0 79 159 36 116 1.62e-18 77.0
MS.gene073925.t1 AT3G23830 55.319 47 21 0 17 63 65 111 1.94e-12 61.2
MS.gene073925.t1 AT4G39260 40.244 82 49 0 74 155 2 83 2.05e-18 76.6
MS.gene073925.t1 AT4G39260 40.244 82 49 0 74 155 2 83 5.61e-18 76.6
MS.gene073925.t1 AT4G13850 45.679 81 44 0 79 159 36 116 6.80e-18 75.5
MS.gene073925.t1 AT4G13850 45.679 81 44 0 79 159 36 116 7.55e-18 75.5
MS.gene073925.t1 AT3G53460 41.772 79 46 0 79 157 258 336 8.65e-18 79.0
MS.gene073925.t1 AT3G53460 45.455 77 42 0 76 152 97 173 1.33e-12 64.3
MS.gene073925.t1 AT3G53460 41.772 79 46 0 79 157 258 336 8.65e-18 79.0
MS.gene073925.t1 AT3G53460 45.455 77 42 0 76 152 97 173 1.33e-12 64.3
MS.gene073925.t1 AT3G53460 41.772 79 46 0 79 157 258 336 8.65e-18 79.0
MS.gene073925.t1 AT3G53460 45.455 77 42 0 76 152 97 173 1.33e-12 64.3
MS.gene073925.t1 AT4G13850 45.679 81 44 0 79 159 36 116 9.30e-18 75.5
MS.gene073925.t1 AT2G21660 39.506 81 49 0 75 155 5 85 9.58e-18 75.9
MS.gene073925.t1 AT4G13850 45.679 81 44 0 79 159 36 116 1.04e-17 75.5
MS.gene073925.t1 AT3G53460 41.772 79 46 0 79 157 279 357 1.08e-17 79.0
MS.gene073925.t1 AT2G21660 39.506 81 49 0 75 155 5 85 1.38e-17 75.9
MS.gene073925.t1 AT4G09040 30.723 166 104 4 2 158 45 208 2.83e-16 73.6
MS.gene073925.t1 AT3G08000 44.737 76 42 0 79 154 42 117 2.99e-16 71.6
MS.gene073925.t1 AT5G61030 42.105 76 44 0 79 154 41 116 5.89e-16 73.6
MS.gene073925.t1 AT5G61030 42.105 76 44 0 79 154 41 116 5.89e-16 73.6
MS.gene073925.t1 AT4G09040 30.723 166 104 4 2 158 105 268 6.78e-16 73.6
MS.gene073925.t1 AT5G59865 44.444 81 45 0 79 159 27 107 8.00e-16 69.7
MS.gene073925.t1 AT3G14100 33.333 111 72 1 44 154 112 220 1.15e-15 73.6
MS.gene073925.t1 AT4G13860 45.333 75 41 0 79 153 4 78 2.12e-15 67.8
MS.gene073925.t1 AT5G54900 31.507 146 96 3 18 159 91 236 7.03e-15 71.2
MS.gene073925.t1 AT1G54080 31.532 111 74 1 44 154 116 224 1.08e-14 70.5
MS.gene073925.t1 AT5G19350 30.345 145 97 3 18 159 55 198 1.30e-14 70.5
MS.gene073925.t1 AT5G19350 30.345 145 97 3 18 159 55 198 1.30e-14 70.5
MS.gene073925.t1 AT1G11650 28.571 154 87 4 18 158 93 236 3.32e-14 68.9
MS.gene073925.t1 AT5G06210 38.272 81 50 0 79 159 35 115 3.49e-14 66.2
MS.gene073925.t1 AT5G40490 27.586 145 98 3 16 158 54 193 3.55e-14 69.3
MS.gene073925.t1 AT2G23350 33.962 159 88 4 14 157 250 406 4.22e-14 68.9
MS.gene073925.t1 AT3G13224 30.263 152 89 4 16 159 39 181 4.61e-14 68.6
MS.gene073925.t1 AT4G39260 38.806 67 41 0 74 140 2 68 5.55e-14 64.7
MS.gene073925.t1 AT3G13224 30.667 150 87 4 18 159 50 190 6.10e-14 68.2
MS.gene073925.t1 AT1G47500 28.767 146 100 3 18 159 136 281 6.35e-14 68.2
MS.gene073925.t1 AT5G40490 27.586 145 98 3 16 158 71 210 6.91e-14 68.2
MS.gene073925.t1 AT1G11650 30.000 150 90 5 18 158 93 236 6.93e-14 68.2
MS.gene073925.t1 AT1G17370 30.400 125 85 1 30 154 93 215 1.03e-13 67.8
MS.gene073925.t1 AT1G17370 30.400 125 85 1 30 154 93 215 1.11e-13 67.8
MS.gene073925.t1 AT1G47500 28.767 146 100 3 18 159 136 281 1.38e-13 67.4
MS.gene073925.t1 AT2G18510 31.915 141 91 2 18 157 56 192 1.82e-13 67.0
MS.gene073925.t1 AT1G22760 31.210 157 93 4 15 157 255 410 2.27e-13 67.0
MS.gene073925.t1 AT4G34110 29.801 151 82 3 25 157 252 396 2.39e-13 67.0
MS.gene073925.t1 AT4G34110 28.889 135 94 2 24 157 160 293 6.90e-12 62.8
MS.gene073925.t1 AT2G36660 31.469 143 84 3 28 157 241 382 3.39e-13 66.6
MS.gene073925.t1 AT1G49760 30.909 165 90 3 11 157 247 405 3.68e-13 66.2
MS.gene073925.t1 AT1G49760 43.056 72 41 0 80 151 47 118 6.60e-11 60.1
MS.gene073925.t1 AT1G49760 30.909 165 90 3 11 157 247 405 3.68e-13 66.2
MS.gene073925.t1 AT1G49760 43.056 72 41 0 80 151 47 118 6.60e-11 60.1
MS.gene073925.t1 AT3G19130 30.822 146 97 3 18 159 139 284 4.18e-13 66.2
MS.gene073925.t1 AT3G13224 33.077 130 70 4 16 137 48 168 5.76e-13 64.7
MS.gene073925.t1 AT4G27000 29.861 144 98 2 18 158 111 254 6.70e-13 65.5
MS.gene073925.t1 AT1G54080 30.435 115 74 2 44 154 116 228 7.50e-13 65.5
MS.gene073925.t1 AT1G18630 43.038 79 45 0 76 154 34 112 8.21e-13 62.8
MS.gene073925.t1 AT1G74230 39.474 76 45 1 79 154 35 109 1.07e-12 64.3
MS.gene073925.t1 AT5G47620 31.973 147 90 4 17 154 36 181 1.08e-12 65.1
MS.gene073925.t1 AT5G47620 31.973 147 90 4 17 154 36 181 1.08e-12 65.1
MS.gene073925.t1 AT5G47620 31.973 147 90 4 17 154 36 181 1.08e-12 65.1
MS.gene073925.t1 AT1G47490 27.397 146 102 3 18 159 134 279 1.28e-12 64.3
MS.gene073925.t1 AT4G00830 30.137 146 87 4 18 159 147 281 1.76e-12 64.3
MS.gene073925.t1 AT4G00830 30.137 146 87 4 18 159 147 281 1.76e-12 64.3
MS.gene073925.t1 AT4G00830 30.137 146 87 4 18 159 147 281 1.76e-12 64.3
MS.gene073925.t1 AT1G47490 27.397 146 102 3 18 159 134 279 2.34e-12 63.9
MS.gene073925.t1 AT3G16380 28.324 173 94 6 7 157 218 382 3.13e-12 63.5
MS.gene073925.t1 AT3G16380 30.882 136 92 2 23 157 146 280 8.20e-11 59.7
MS.gene073925.t1 AT3G04500 37.975 79 49 0 73 151 132 210 3.59e-12 62.4
MS.gene073925.t1 AT1G49600 29.452 146 99 3 18 159 150 295 5.81e-12 62.8
MS.gene073925.t1 AT1G49600 29.452 146 99 3 18 159 150 295 5.81e-12 62.8
MS.gene073925.t1 AT1G49600 29.452 146 99 3 18 159 150 295 7.58e-12 62.4
MS.gene073925.t1 AT1G71800 39.241 79 48 0 80 158 11 89 1.02e-11 62.0
MS.gene073925.t1 AT4G00830 29.167 144 83 3 18 159 147 273 1.16e-11 62.0
MS.gene073925.t1 AT4G00830 29.167 144 83 3 18 159 147 273 1.16e-11 62.0
MS.gene073925.t1 AT3G07810 30.128 156 81 4 18 154 37 183 1.56e-11 61.6
MS.gene073925.t1 AT3G07810 30.128 156 81 4 18 154 37 183 1.64e-11 61.6
MS.gene073925.t1 AT4G14300 31.613 155 82 6 18 154 37 185 2.60e-11 60.8
MS.gene073925.t1 AT4G14300 31.613 155 82 6 18 154 37 185 2.60e-11 60.8
MS.gene073925.t1 AT2G21690 36.000 75 48 0 77 151 6 80 3.32e-11 57.8
MS.gene073925.t1 AT1G76460 39.474 76 45 1 79 154 25 99 3.89e-11 60.1
MS.gene073925.t1 AT5G51300 40.000 90 50 2 65 154 471 556 4.28e-11 60.5
MS.gene073925.t1 AT5G51300 40.000 90 50 2 65 154 471 556 4.28e-11 60.5
MS.gene073925.t1 AT5G51300 40.000 90 50 2 65 154 471 556 4.28e-11 60.5
MS.gene073925.t1 AT5G04280 31.646 79 54 0 79 157 8 86 7.34e-11 59.3
MS.gene073925.t1 AT1G60650 30.864 81 56 0 77 157 11 91 7.43e-11 59.3
MS.gene073925.t1 AT1G60650 30.864 81 56 0 77 157 11 91 7.43e-11 59.3

Find 38 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCCATTTCTTCTTTAT+TGG 0.185459 1.1:-28598700 None:intergenic
AAAAGCTTATACTCAGTTTC+AGG 0.207006 1.1:-28598540 None:intergenic
GCCATAGCCACGAGACTTTC+CGG 0.218687 1.1:-28598664 None:intergenic
TCAGGATACAATGGTTCTTT+TGG 0.300465 1.1:-28598522 None:intergenic
CAAGAACATGGAACTGTTGT+TGG 0.308779 1.1:+28598615 MS.gene073925:CDS
GTTCATGGGGCGAACCTTAC+GGG 0.383471 1.1:+28598476 MS.gene073925:CDS
TAGACATTTGACAGTGTTGA+TGG 0.384129 1.1:-28596795 None:intergenic
CCACATTATCCATGATTGTA+AGG 0.390696 1.1:-28598725 None:intergenic
GTGTTATATGATGGCGAAAC+CGG 0.401723 1.1:+28598645 MS.gene073925:CDS
CTATGCCAATAAAGAAGAAA+TGG 0.408357 1.1:+28598695 MS.gene073925:CDS
AACAACTTCTCAGGAGTTCA+TGG 0.409783 1.1:+28598461 MS.gene073925:intron
AGTTCATGGGGCGAACCTTA+CGG 0.429710 1.1:+28598475 MS.gene073925:CDS
ACCGGAAAGTCTCGTGGCTA+TGG 0.439880 1.1:+28598663 MS.gene073925:CDS
GGATGCCGCCCTTACAATCA+TGG 0.469351 1.1:+28598716 MS.gene073925:CDS
AACAACATGGCTACTGCAGC+AGG 0.474982 1.1:+28596749 None:intergenic
TGTGCACTTCAGGAACTAGA+AGG 0.476194 1.1:+28599016 MS.gene073925:intron
CATTTCTTCTTTATTGGCAT+AGG 0.491159 1.1:-28598694 None:intergenic
ACGAACATTGCGAGTAAGCT+TGG 0.496136 1.1:+28599039 MS.gene073925:CDS
CATGGCTACTGCAGCAGGCA+TGG 0.506381 1.1:+28596754 None:intergenic
CAGTAATTCAAAATCTTGAC+GGG 0.510605 1.1:+28598364 MS.gene073925:CDS
GCAGTAATTCAAAATCTTGA+CGG 0.511117 1.1:+28598363 MS.gene073925:CDS
GCTCAAGGAAAACGTTCATA+AGG 0.515842 1.1:+28599061 MS.gene073925:CDS
AACAGTTCCATGTTCTTGAA+AGG 0.519477 1.1:-28598610 None:intergenic
GTCAGCGAAATTCACCCGTA+AGG 0.527368 1.1:-28598490 None:intergenic
GTTCTTTATGACAGAGACAC+TGG 0.531305 1.1:+28598288 MS.gene073925:CDS
ACACAAGCCTTTCAAGAACA+TGG 0.556072 1.1:+28598603 MS.gene073925:CDS
ATGGAACTGTTGTTGGAGCT+AGG 0.560429 1.1:+28598622 MS.gene073925:CDS
ACAACTTCTCAGGAGTTCAT+GGG 0.561128 1.1:+28598462 MS.gene073925:intron
TACTCAGTTTCAGGATACAA+TGG 0.561289 1.1:-28598531 None:intergenic
CCTTACAATCATGGATAATG+TGG 0.592838 1.1:+28598725 MS.gene073925:CDS
TGGAACTGTTGTTGGAGCTA+GGG 0.592911 1.1:+28598623 MS.gene073925:CDS
CACATTATCCATGATTGTAA+GGG 0.601934 1.1:-28598724 None:intergenic
ATTATCCATGATTGTAAGGG+CGG 0.604033 1.1:-28598721 None:intergenic
TTGCGAGTAAGCTTGGCTCA+AGG 0.622339 1.1:+28599046 MS.gene073925:CDS
GGAGCTAGGGTGTTATATGA+TGG 0.637064 1.1:+28598636 MS.gene073925:CDS
GGCGAAACCGGAAAGTCTCG+TGG 0.640311 1.1:+28598657 MS.gene073925:CDS
CAACTTCTCAGGAGTTCATG+GGG 0.648152 1.1:+28598463 MS.gene073925:intron
GATGGAAGATGAAAACAATG+AGG 0.726129 1.1:-28596777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTTAATATTCTTC+AGG + chr1.1:28597717-28597736 MS.gene073925:intron 10.0%
!! CTATAGATTATAAATTTAGT+TGG - chr1.1:28597986-28598005 None:intergenic 15.0%
!! TAAACTATAAAACTTAGTTA+TGG + chr1.1:28598090-28598109 MS.gene073925:intron 15.0%
!! AAAAATAATGGCAGAAAATT+TGG - chr1.1:28598166-28598185 None:intergenic 20.0%
!! ATTAACATTAATGTAACTCA+AGG - chr1.1:28598249-28598268 None:intergenic 20.0%
!! CTTTAATGAATTGTAAATTC+AGG - chr1.1:28597933-28597952 None:intergenic 20.0%
!! TACTATCTATATGATGATTT+AGG + chr1.1:28597517-28597536 MS.gene073925:intron 20.0%
!!! AATGATTTGTATATGTCTTT+AGG + chr1.1:28598266-28598285 MS.gene073925:intron 20.0%
!!! GTAATTGTGATTTAAAACTT+CGG + chr1.1:28598934-28598953 MS.gene073925:intron 20.0%
!!! TGAAGTAATTCTATTAGTTT+TGG + chr1.1:28597459-28597478 MS.gene073925:intron 20.0%
! AATATTCATCGTTAAGAACT+AGG + chr1.1:28597211-28597230 MS.gene073925:intron 25.0%
! ATCATACAATACAAGTTTGA+GGG - chr1.1:28598199-28598218 None:intergenic 25.0%
! CAAACTTGTATTGTATGATA+TGG + chr1.1:28598200-28598219 MS.gene073925:intron 25.0%
! GGATGTATACTGAAAAATAA+TGG - chr1.1:28598178-28598197 None:intergenic 25.0%
! TATCATACAATACAAGTTTG+AGG - chr1.1:28598200-28598219 None:intergenic 25.0%
! TGAAAATTAACAGGTCTTAA+TGG - chr1.1:28597823-28597842 None:intergenic 25.0%
! TGATTATGGTGAAAATTAAC+AGG - chr1.1:28597832-28597851 None:intergenic 25.0%
! TTACATGTGAGTTTATACTA+TGG - chr1.1:28597649-28597668 None:intergenic 25.0%
AAAAGCTTATACTCAGTTTC+AGG - chr1.1:28598543-28598562 None:intergenic 30.0%
ACTTAGTTATGGATAGACTT+TGG + chr1.1:28598101-28598120 MS.gene073925:intron 30.0%
AGATCAAAGATACAAACATG+CGG - chr1.1:28596856-28596875 None:intergenic 30.0%
ATTGTGACTTAAACTGTGAA+AGG + chr1.1:28597896-28597915 MS.gene073925:intron 30.0%
CAAGGAATGAAACATAAACA+TGG - chr1.1:28598231-28598250 None:intergenic 30.0%
CACATTATCCATGATTGTAA+GGG - chr1.1:28598727-28598746 None:intergenic 30.0%
CAGTAATTCAAAATCTTGAC+GGG + chr1.1:28598364-28598383 MS.gene073925:CDS 30.0%
CATTTCTTCTTTATTGGCAT+AGG - chr1.1:28598697-28598716 None:intergenic 30.0%
CTATGCCAATAAAGAAGAAA+TGG + chr1.1:28598695-28598714 MS.gene073925:CDS 30.0%
GCAATTATATGCAAATGTCA+AGG + chr1.1:28598897-28598916 MS.gene073925:intron 30.0%
GCAGTAATTCAAAATCTTGA+CGG + chr1.1:28598363-28598382 MS.gene073925:CDS 30.0%
TTGTAAATGAACAACTTCTC+AGG + chr1.1:28598452-28598471 MS.gene073925:intron 30.0%
TTGTGACTTAAACTGTGAAA+GGG + chr1.1:28597897-28597916 MS.gene073925:intron 30.0%
! ACTGAGTATAAGCTTTTTGT+TGG + chr1.1:28598546-28598565 MS.gene073925:CDS 30.0%
! CTGAGTATAAGCTTTTTGTT+GGG + chr1.1:28598547-28598566 MS.gene073925:CDS 30.0%
! TGTATCTAATGAGGAGTTTT+TGG - chr1.1:28596825-28596844 None:intergenic 30.0%
!!! ACTAGGACTAAGCTTTATTT+TGG + chr1.1:28597088-28597107 MS.gene073925:intron 30.0%
!!! TACAATGGTTCTTTTGGTTT+AGG - chr1.1:28598519-28598538 None:intergenic 30.0%
AACAGTTCCATGTTCTTGAA+AGG - chr1.1:28598613-28598632 None:intergenic 35.0%
AAGACAAGGAGAATATTGGA+GGG + chr1.1:28597044-28597063 MS.gene073925:intron 35.0%
AGAAGAAGTAGTAGAAGACA+AGG + chr1.1:28597030-28597049 MS.gene073925:intron 35.0%
AGTGCACTATCAACACTATA+AGG - chr1.1:28597121-28597140 None:intergenic 35.0%
ATTATCCATGATTGTAAGGG+CGG - chr1.1:28598724-28598743 None:intergenic 35.0%
CAACAGTTTCACACAAGTTA+TGG + chr1.1:28596909-28596928 MS.gene073925:intron 35.0%
CCACATTATCCATGATTGTA+AGG - chr1.1:28598728-28598747 None:intergenic 35.0%
CCTTACAATCATGGATAATG+TGG + chr1.1:28598725-28598744 MS.gene073925:CDS 35.0%
GATGGAAGATGAAAACAATG+AGG - chr1.1:28596780-28596799 None:intergenic 35.0%
GGCATCCATTTCTTCTTTAT+TGG - chr1.1:28598703-28598722 None:intergenic 35.0%
GTAGAAGACAAGGAGAATAT+TGG + chr1.1:28597040-28597059 MS.gene073925:intron 35.0%
GTGCATAAAAGATTGAAGAG+AGG - chr1.1:28598763-28598782 None:intergenic 35.0%
GTTCGCTTAAATTCAAGTCA+CGG - chr1.1:28598806-28598825 None:intergenic 35.0%
GTTTGAGGATGTATCTAATG+AGG - chr1.1:28596834-28596853 None:intergenic 35.0%
TACGTTTGTGTGTGTAAACA+AGG + chr1.1:28598960-28598979 MS.gene073925:intron 35.0%
TACTCAGTTTCAGGATACAA+TGG - chr1.1:28598534-28598553 None:intergenic 35.0%
TCAGATTAAATACGCGTCTA+GGG + chr1.1:28597260-28597279 MS.gene073925:intron 35.0%
TGTGACTTAAACTGTGAAAG+GGG + chr1.1:28597898-28597917 MS.gene073925:intron 35.0%
TTCAGATTAAATACGCGTCT+AGG + chr1.1:28597259-28597278 MS.gene073925:intron 35.0%
TTCGCTTAAATTCAAGTCAC+GGG - chr1.1:28598805-28598824 None:intergenic 35.0%
! CTTTGTAATTTGTGCACTTC+AGG + chr1.1:28599006-28599025 MS.gene073925:intron 35.0%
! GATGCAGCTGATAATGATTA+TGG - chr1.1:28597846-28597865 None:intergenic 35.0%
! GCGTATTTAATCTGAAGTGT+CGG - chr1.1:28597255-28597274 None:intergenic 35.0%
! TAAGCTTTTTGTTGGGAACT+TGG + chr1.1:28598554-28598573 MS.gene073925:CDS 35.0%
! TAGACATTTGACAGTGTTGA+TGG - chr1.1:28596798-28596817 None:intergenic 35.0%
! TCAGGATACAATGGTTCTTT+TGG - chr1.1:28598525-28598544 None:intergenic 35.0%
! TCTCGTCTCTAGTTTGATTT+CGG + chr1.1:28597759-28597778 MS.gene073925:intron 35.0%
! TGGTAGTGCAGAATTAATTG+AGG + chr1.1:28597165-28597184 MS.gene073925:intron 35.0%
!! GAAGATTGTTTGCTATAGCT+AGG + chr1.1:28597407-28597426 MS.gene073925:intron 35.0%
!! GCACAGCGACTTTTAAAAAA+CGG + chr1.1:28598779-28598798 MS.gene073925:intron 35.0%
!! TTGTTTGCTATAGCTAGGAT+AGG + chr1.1:28597412-28597431 MS.gene073925:intron 35.0%
AAATGAAAGCTGCAGCTAGA+AGG - chr1.1:28597543-28597562 None:intergenic 40.0%
AACAACTTCTCAGGAGTTCA+TGG + chr1.1:28598461-28598480 MS.gene073925:intron 40.0%
ACAACTTCTCAGGAGTTCAT+GGG + chr1.1:28598462-28598481 MS.gene073925:intron 40.0%
ACACAAGCCTTTCAAGAACA+TGG + chr1.1:28598603-28598622 MS.gene073925:CDS 40.0%
ACTACTTGCAGGGTTAATTG+AGG + chr1.1:28597138-28597157 MS.gene073925:intron 40.0%
AGACAAGGAGAATATTGGAG+GGG + chr1.1:28597045-28597064 MS.gene073925:intron 40.0%
AGAGACACTGGAAAAAGTAG+AGG + chr1.1:28598300-28598319 MS.gene073925:CDS 40.0%
AGATACAAACATGCGGTTTG+AGG - chr1.1:28596849-28596868 None:intergenic 40.0%
AGATTAAATACGCGTCTAGG+GGG + chr1.1:28597262-28597281 MS.gene073925:intron 40.0%
CAAGAACATGGAACTGTTGT+TGG + chr1.1:28598615-28598634 MS.gene073925:CDS 40.0%
CAGATTAAATACGCGTCTAG+GGG + chr1.1:28597261-28597280 MS.gene073925:intron 40.0%
GAAGACAAGGAGAATATTGG+AGG + chr1.1:28597043-28597062 MS.gene073925:intron 40.0%
GCAACAGCAACAGAAATTCT+AGG - chr1.1:28596938-28596957 None:intergenic 40.0%
GGATGAAGAGAAAGTTGTAG+TGG + chr1.1:28596985-28597004 MS.gene073925:intron 40.0%
GTTCTTTATGACAGAGACAC+TGG + chr1.1:28598288-28598307 MS.gene073925:CDS 40.0%
TTTGATCTCACAATCCTCAG+TGG + chr1.1:28596868-28596887 MS.gene073925:intron 40.0%
! AATTTCTGTTGCTGTTGCAC+AGG + chr1.1:28596940-28596959 MS.gene073925:intron 40.0%
! AGAGAAAGTTGTAGTGGAAG+AGG + chr1.1:28596991-28597010 MS.gene073925:intron 40.0%
! GTGTTATATGATGGCGAAAC+CGG + chr1.1:28598645-28598664 MS.gene073925:CDS 40.0%
! TTTTTGTTGGGAACTTGGCT+TGG + chr1.1:28598559-28598578 MS.gene073925:CDS 40.0%
!! TTGATAGTGCACTACTTGCA+GGG + chr1.1:28597128-28597147 MS.gene073925:intron 40.0%
AATGGACAAAGGTTCCACTG+AGG - chr1.1:28596885-28596904 None:intergenic 45.0%
ACGAACATTGCGAGTAAGCT+TGG + chr1.1:28599039-28599058 MS.gene073925:CDS 45.0%
ACTGTTGTGCCAATGGACAA+AGG - chr1.1:28596896-28596915 None:intergenic 45.0%
ATGGAACTGTTGTTGGAGCT+AGG + chr1.1:28598622-28598641 MS.gene073925:CDS 45.0%
CAACTTCTCAGGAGTTCATG+GGG + chr1.1:28598463-28598482 MS.gene073925:intron 45.0%
CTAGGGGGTTCAACATATGT+TGG + chr1.1:28597277-28597296 MS.gene073925:intron 45.0%
CTGTAGCAGAAGTAGACACT+AGG + chr1.1:28597071-28597090 MS.gene073925:intron 45.0%
GCAGGGTTAATTGAGGAGTA+TGG + chr1.1:28597145-28597164 MS.gene073925:intron 45.0%
GTGTGAAACTGTTGTGCCAA+TGG - chr1.1:28596903-28596922 None:intergenic 45.0%
TCAGTGGAACCTTTGTCCAT+TGG + chr1.1:28596884-28596903 MS.gene073925:intron 45.0%
TGGAACTGTTGTTGGAGCTA+GGG + chr1.1:28598623-28598642 MS.gene073925:CDS 45.0%
TGTGCACTTCAGGAACTAGA+AGG + chr1.1:28599016-28599035 MS.gene073925:intron 45.0%
! GGAGCTAGGGTGTTATATGA+TGG + chr1.1:28598636-28598655 MS.gene073925:CDS 45.0%
!! ACATATGTTGGTGTCGCAAG+TGG + chr1.1:28597289-28597308 MS.gene073925:intron 45.0%
!! GTTGATAGTGCACTACTTGC+AGG + chr1.1:28597127-28597146 MS.gene073925:intron 45.0%
!!! ATAATTTTTTAAAATGAAAT+CGG - chr1.1:28597323-28597342 None:intergenic 5.0%
AGTTCATGGGGCGAACCTTA+CGG + chr1.1:28598475-28598494 MS.gene073925:CDS 50.0%
GTCAGCGAAATTCACCCGTA+AGG - chr1.1:28598493-28598512 None:intergenic 50.0%
TTGCGAGTAAGCTTGGCTCA+AGG + chr1.1:28599046-28599065 MS.gene073925:CDS 50.0%
! TGTTGCTGTTGCACAGGAAG+AGG + chr1.1:28596946-28596965 MS.gene073925:intron 50.0%
ACCGGAAAGTCTCGTGGCTA+TGG + chr1.1:28598663-28598682 MS.gene073925:CDS 55.0%
GCCATAGCCACGAGACTTTC+CGG - chr1.1:28598667-28598686 None:intergenic 55.0%
GGATGCCGCCCTTACAATCA+TGG + chr1.1:28598716-28598735 MS.gene073925:CDS 55.0%
GTTCATGGGGCGAACCTTAC+GGG + chr1.1:28598476-28598495 MS.gene073925:CDS 55.0%
TGCACAGGAAGAGGCTGTTG+CGG + chr1.1:28596955-28596974 MS.gene073925:intron 55.0%
AGAGGCTGTTGCGGCTGTTG+AGG + chr1.1:28596964-28596983 MS.gene073925:intron 60.0%
GGCGAAACCGGAAAGTCTCG+TGG + chr1.1:28598657-28598676 MS.gene073925:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 28596755 28599081 28596755 ID=MS.gene073925
chr1.1 mRNA 28596755 28599081 28596755 ID=MS.gene073925.t1;Parent=MS.gene073925
chr1.1 exon 28596755 28596805 28596755 ID=MS.gene073925.t1.exon1;Parent=MS.gene073925.t1
chr1.1 CDS 28596755 28596805 28596755 ID=cds.MS.gene073925.t1;Parent=MS.gene073925.t1
chr1.1 exon 28598288 28598389 28598288 ID=MS.gene073925.t1.exon2;Parent=MS.gene073925.t1
chr1.1 CDS 28598288 28598389 28598288 ID=cds.MS.gene073925.t1;Parent=MS.gene073925.t1
chr1.1 exon 28598474 28598746 28598474 ID=MS.gene073925.t1.exon3;Parent=MS.gene073925.t1
chr1.1 CDS 28598474 28598746 28598474 ID=cds.MS.gene073925.t1;Parent=MS.gene073925.t1
chr1.1 exon 28599028 28599081 28599028 ID=MS.gene073925.t1.exon4;Parent=MS.gene073925.t1
chr1.1 CDS 28599028 28599081 28599028 ID=cds.MS.gene073925.t1;Parent=MS.gene073925.t1
Gene Sequence

>MS.gene073925

ATGGCTACTGCAGCAGGCATGGCCTCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTACGTTCCAAAAACTCCTCATTAGATACATCCTCAAACCGCATGTTTGTATCTTTGATCTCACAATCCTCAGTGGAACCTTTGTCCATTGGCACAACAGTTTCACACAAGTTATGGTTTCCTAGAATTTCTGTTGCTGTTGCACAGGAAGAGGCTGTTGCGGCTGTTGAGGATGAAGAGAAAGTTGTAGTGGAAGAGGAAAAAAAAGAAGAAGAAGAAGAAGTAGTAGAAGACAAGGAGAATATTGGAGGGGAAACTGTAGCAGAAGTAGACACTAGGACTAAGCTTTATTTTGGCAATTTGCCTTATAGTGTTGATAGTGCACTACTTGCAGGGTTAATTGAGGAGTATGGTAGTGCAGAATTAATTGAGGTACTTCATTATCTAACTATTTTCAATATTCATCGTTAAGAACTAGGTCAACTAGCTATGTAGCACCGACACTTCAGATTAAATACGCGTCTAGGGGGTTCAACATATGTTGGTGTCGCAAGTGGATATTTAACCGATTTCATTTTAAAAAATTATTATCAGTGTCTATGTGTTAGTCTTATCGTGTCATGTTTTTGTGTTAGTGCTTCATAGATAACTAGAAGATTGTTTGCTATAGCTAGGATAGGAGTGATTTTGTAAATTTCGTTGATTGAAGTAATTCTATTAGTTTTGGATCAAATAACAGAAAAAATCATGAAGCTTTGCAGTTACTATCTATATGATGATTTAGGCCTTCTAGCTGCAGCTTTCATTTGTGCTAATTGAAATGAAATTTTTCTGAAAATATATTCAACTAGAGCTTTTAGACGAGTTTTTGTTAAACTTATTTCGACTTATCCATAGTATAAACTCACATGTAAGTGTTTGAAAACACTCACTAGTTTATGATATGCTTATAAGCTGCTTTTAATTTATTTTAATATTCTTCAGGATAAGTGAAATAGAGTTTGTCTCGTCTCTAGTTTGATTTCGGTCGATCAGAGTCTGAAATAAGTTTTTATGCATATCTTACCATTAAGACCTGTTAATTTTCACCATAATCATTATCAGCTGCATCTTTATCAGTTTTTGTTTCAAATAACTTATTATTGTGACTTAAACTGTGAAAGGGGCTTCTGATTCCTGAATTTACAATTCATTAAAGTAACTTATCATAAGTGAGAAATGCAATAATCCAACTAAATTTATAATCTATAGAGAGATTTCTGTACTGAAGATTACATCGAATGTTTACAGAAAGAAAATGTGCGAGAAAAAGAGAAATTAAATTGTTACACATATTAAACTATAAAACTTAGTTATGGATAGACTTTGGCAAATTAATATATTAAAAAGAAAGAAAAAAAGATAAAAACCAAATTTTCTGCCATTATTTTTCAGTATACATCCCTCAAACTTGTATTGTATGATATGGTTTATCCATGTTTATGTTTCATTCCTTGAGTTACATTAATGTTAATGATTTGTATATGTCTTTAGGTTCTTTATGACAGAGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTGTTGAAGATTGTAATGCAGTAATTCAAAATCTTGACGGGAAAGTAAGAATCACTATCTATGATCAATTTCTATGTAATGCTTCAATATTTTTGCATGCTAACTTTTGTAAATGAACAACTTCTCAGGAGTTCATGGGGCGAACCTTACGGGTGAATTTCGCTGACAAACCTAAACCAAAAGAACCATTGTATCCTGAAACTGAGTATAAGCTTTTTGTTGGGAACTTGGCTTGGACAGTAACTTCTGAGAGTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACCGGAAAGTCTCGTGGCTATGGCTTTGTTTCCTATGCCAATAAAGAAGAAATGGATGCCGCCCTTACAATCATGGATAATGTGGTATGTTACTTATCCTCTCTTCAATCTTTTATGCACAGCGACTTTTAAAAAACGGCCCGTGACTTGAATTTAAGCGAACATAATTTTTTTTTTCATGACTTTGTAAGCATAATGTGACAACAATTGACGCTGAATCAGCAGTATTTGACTGCAATTATATGCAAATGTCAAGGATAGCTGTATGATTGTAATTGTGATTTAAAACTTCGGTTATACGTTTGTGTGTGTAAACAAGGAGTTGTGATTTTTCTTATTGTTTCTTTGTAATTTGTGCACTTCAGGAACTAGAAGGACGAACATTGCGAGTAAGCTTGGCTCAAGGAAAACGTTCATAA

Protein sequence

>MS.gene073925.t1

MATAAGMASLFSSSINTVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFADKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLYDGETGKSRGYGFVSYANKEEMDAALTIMDNVELEGRTLRVSLAQGKRS