AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049491


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049491.t1 MTR_3g466250 95.800 500 21 0 1 500 1 500 0.0 955
MS.gene049491.t1 MTR_4g121070 89.022 501 35 6 1 500 1 482 0.0 883
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049491.t1 AT3G02660 64.217 517 152 6 4 500 8 511 0.0 659
MS.gene049491.t1 AT3G02660 64.217 517 152 6 4 500 8 511 0.0 659

Find 114 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCAACTCTTTAAATTT+TGG 0.121431 3.2:-56868081 None:intergenic
CTTGCATTTGGGCAATTTAT+TGG 0.174087 3.2:+56867867 MS.gene049491:CDS
GTGGAAAGAGTTTAGTTTAT+TGG 0.192217 3.2:+56868158 MS.gene049491:CDS
GAGGGTGTTAATGTTCAAAT+TGG 0.195282 3.2:+56868336 MS.gene049491:CDS
GTTGATCTTTCTGTTTCTTC+TGG 0.223800 3.2:+56868864 MS.gene049491:CDS
ATCTTCCCCATGAACAAATT+TGG 0.226803 3.2:-56868700 None:intergenic
ATGGTTTGAACGAAGCTCTT+AGG 0.304100 3.2:+56868721 MS.gene049491:CDS
TTGCATTTGGGCAATTTATT+GGG 0.319343 3.2:+56867868 MS.gene049491:CDS
GCGCGTGTCGGTGACCCGTC+TGG 0.321350 3.2:+56867958 MS.gene049491:CDS
AACTGCCGAAAGCTTGCATT+TGG 0.323309 3.2:+56867855 MS.gene049491:CDS
AACAAATTTGGTAACTTCTT+CGG 0.340398 3.2:-56868688 None:intergenic
AGGGTGTTAATGTTCAAATT+GGG 0.342798 3.2:+56868337 MS.gene049491:CDS
AAATATTGATAAAACTTATA+AGG 0.350606 3.2:-56868531 None:intergenic
TGGGTCTCATTGTTCTCTCT+TGG 0.362873 3.2:+56867887 MS.gene049491:CDS
AAACGGAGTGGAAGAGAAAA+GGG 0.369578 3.2:-56867655 None:intergenic
AGTCAGAGGATGGTGCAATT+TGG 0.370053 3.2:+56868487 MS.gene049491:CDS
AAAAGTGATGGTACGAAATT+CGG 0.383590 3.2:+56868462 MS.gene049491:CDS
AGGAAGATATTGCAGGTAGA+AGG 0.384359 3.2:+56868405 MS.gene049491:CDS
GAAGTTACCAAATTTGTTCA+TGG 0.387892 3.2:+56868693 MS.gene049491:CDS
TTTGAGGTTGTTGGTGATGT+TGG 0.389071 3.2:-56867705 None:intergenic
AGCCTCCGCTGAGCAGTATT+AGG 0.404057 3.2:-56868663 None:intergenic
CTGCTGGAACTGAATTGATT+AGG 0.405094 3.2:+56868385 MS.gene049491:CDS
AAACACCATCAGAACAATCT+TGG 0.406125 3.2:+56868044 MS.gene049491:CDS
TTCTGGATGCTGATGTTGTT+TGG 0.407275 3.2:+56868562 MS.gene049491:CDS
TCAGCTTGATGTTGAAACTT+TGG 0.407860 3.2:+56867999 MS.gene049491:CDS
GGAAAGTGTTAGGAAGAGAT+TGG 0.412929 3.2:+56868233 MS.gene049491:CDS
TTTAAAGAGTTGAATGTGAA+TGG 0.416037 3.2:+56868087 MS.gene049491:CDS
CTCTCTTGGTTCCGCCGCTC+CGG 0.419798 3.2:+56867901 MS.gene049491:CDS
TGTTCTTGAAGCAAAATTTG+TGG 0.422366 3.2:-56867563 None:intergenic
ATTGATTAGGAAGATATTGC+AGG 0.422855 3.2:+56868398 MS.gene049491:CDS
TTTGTATTTGTTTCAGAATG+AGG 0.423118 3.2:+56868317 MS.gene049491:CDS
TTCGAGTGGTTTGAGGTTGT+TGG 0.427101 3.2:-56867714 None:intergenic
ACTTTGGAGAGGAATACTTT+AGG 0.434783 3.2:+56868015 MS.gene049491:CDS
TGGTTTGAACGAAGCTCTTA+GGG 0.435112 3.2:+56868722 MS.gene049491:CDS
TTGTATTTGTTTCAGAATGA+GGG 0.436229 3.2:+56868318 MS.gene049491:CDS
GAAGAAAGAGAGGGTTTGAA+TGG 0.438610 3.2:-56867622 None:intergenic
GAGTAGATAGTGAAAATAAG+AGG 0.448915 3.2:+56868955 MS.gene049491:CDS
TGATGGCTAAGGAAAGTGTT+AGG 0.451139 3.2:+56868223 MS.gene049491:CDS
AAATTTGTTCATGGGGAAGA+TGG 0.459792 3.2:+56868702 MS.gene049491:CDS
GTTGTTGGTGATGTTGGTGT+TGG 0.462279 3.2:-56867699 None:intergenic
ATTGCCCAAATGCAAGCTTT+CGG 0.462905 3.2:-56867860 None:intergenic
ATGACATTTCGAGTGGTTTG+AGG 0.463983 3.2:-56867721 None:intergenic
CAGGTAGAAGGTGGTACCTA+TGG 0.467385 3.2:+56868417 MS.gene049491:CDS
GGCGACTGAAGCGTTGAGGC+CGG 0.469483 3.2:+56868743 MS.gene049491:CDS
CGCGTGTCGGTGACCCGTCT+GGG 0.470245 3.2:+56867959 MS.gene049491:CDS
TGCAGGTTGTTCTTGTGAAA+CGG 0.475058 3.2:-56867672 None:intergenic
GAAACGGAGTGGAAGAGAAA+AGG 0.475703 3.2:-56867656 None:intergenic
AAATGCAAGCTTTCGGCAGT+TGG 0.475737 3.2:-56867853 None:intergenic
TATTGATGAGATAGTGAAGT+TGG 0.479265 3.2:+56868611 MS.gene049491:CDS
TTGGACTGGAAAACTATTGA+GGG 0.479494 3.2:+56868780 MS.gene049491:CDS
GATTGAGGCAGCTGATATAG+TGG 0.483535 3.2:+56868977 MS.gene049491:CDS
ACTGCCGAAAGCTTGCATTT+GGG 0.489661 3.2:+56867856 MS.gene049491:CDS
CATAACGTTGTGGCGTTGAT+CGG 0.490763 3.2:+56867925 MS.gene049491:CDS
ATGTTGGTGTTGGAGAGTGC+AGG 0.494067 3.2:-56867689 None:intergenic
CAATGGGGTAATATAACTGC+TGG 0.495411 3.2:+56868369 MS.gene049491:CDS
AAGTTACCAAATTTGTTCAT+GGG 0.496359 3.2:+56868694 MS.gene049491:CDS
AACACCATCAGAACAATCTT+GGG 0.501063 3.2:+56868045 MS.gene049491:CDS
AATGCAAGCTTTCGGCAGTT+GGG 0.502532 3.2:-56867852 None:intergenic
GAGGTGTGAAGAAGAAAGAG+AGG 0.506075 3.2:-56867632 None:intergenic
GCGACTGAAGCGTTGAGGCC+GGG 0.522001 3.2:+56868744 MS.gene049491:CDS
GCAGTATTAGGCACGTATCC+AGG 0.523015 3.2:-56868651 None:intergenic
GGGTGTTAATGTTCAAATTG+GGG 0.524227 3.2:+56868338 MS.gene049491:CDS
GAGGAAGAGATGAAGAGGCC+TGG 0.525789 3.2:+56868633 MS.gene049491:CDS
TGATGAGATAGTGAAGTTGG+AGG 0.529410 3.2:+56868614 MS.gene049491:CDS
AGTAGGTTCAATGATGGCTA+AGG 0.544395 3.2:+56868212 MS.gene049491:CDS
GTTGGACTGGAAAACTATTG+AGG 0.545813 3.2:+56868779 MS.gene049491:CDS
TAGTGAAAATAAGAGGATTG+AGG 0.546248 3.2:+56868962 MS.gene049491:CDS
TTTACTTATCAGTTATTGCA+AGG 0.547882 3.2:+56868285 MS.gene049491:CDS
TCCAACTTTGTCTCAGATCC+CGG 0.548872 3.2:-56868762 None:intergenic
AACGTTGTGGCGTTGATCGG+TGG 0.550991 3.2:+56867928 MS.gene049491:CDS
GCCGGGATCTGAGACAAAGT+TGG 0.556041 3.2:+56868761 MS.gene049491:CDS
AATGCTTCTGAGGGAATCGT+TGG 0.560260 3.2:-56867782 None:intergenic
AAGAGGAAATGTTAAACCAT+AGG 0.562252 3.2:-56868433 None:intergenic
TGCTAGAGTAGGTTCAATGA+TGG 0.566664 3.2:+56868206 MS.gene049491:CDS
GATCTGAGACAAAGTTGGAC+TGG 0.567564 3.2:+56868766 MS.gene049491:CDS
ATCGGAATTCTCGAAGAAAG+AGG 0.569696 3.2:+56867742 MS.gene049491:CDS
AGTTACCAAATTTGTTCATG+GGG 0.583369 3.2:+56868695 MS.gene049491:CDS
AGTTGGAGGAAGAGATGAAG+AGG 0.584304 3.2:+56868628 MS.gene049491:CDS
GTTGGTAAATATGCTAGAGT+AGG 0.584735 3.2:+56868195 MS.gene049491:CDS
ACGACCCAAGATTGTTCTGA+TGG 0.587418 3.2:-56868049 None:intergenic
AGGTGTGAAGAAGAAAGAGA+GGG 0.599625 3.2:-56867631 None:intergenic
CAACGCCACAACGTTATGAC+CGG 0.600993 3.2:-56867920 None:intergenic
ACAGCAAATCTGCTGCGCGT+CGG 0.601569 3.2:+56868895 MS.gene049491:CDS
GAAAACTATTGAGGGGATTG+CGG 0.602369 3.2:+56868788 MS.gene049491:CDS
AACGGAGTGGAAGAGAAAAG+GGG 0.605055 3.2:-56867654 None:intergenic
GCGCGTCGGTTGTTAAAGCA+AGG 0.617517 3.2:+56868909 MS.gene049491:CDS
CCGCTCCGGTCATAACGTTG+TGG 0.618092 3.2:+56867915 MS.gene049491:CDS
TCGGAATTCTCGAAGAAAGA+GGG 0.619551 3.2:+56867743 MS.gene049491:CDS
CAAACCACTCGAAATGTCAT+CGG 0.621062 3.2:+56867724 MS.gene049491:CDS
CAACGTTATGACCGGAGCGG+CGG 0.624768 3.2:-56867912 None:intergenic
GAGGCAGCTGATATAGTGGA+TGG 0.626682 3.2:+56868981 MS.gene049491:CDS
GTTGTTCTTGTGAAACGGAG+TGG 0.628582 3.2:-56867667 None:intergenic
AAGAGATTGGAATCTGAACA+AGG 0.631435 3.2:+56868246 MS.gene049491:CDS
AAATTCGGTAAGTCAGAGGA+TGG 0.632365 3.2:+56868477 MS.gene049491:CDS
AAGATATTGCAGGTAGAAGG+TGG 0.636964 3.2:+56868408 MS.gene049491:CDS
TTGATGTTGAAACTTTGGAG+AGG 0.637770 3.2:+56868004 MS.gene049491:CDS
TTAGGGCGACTGAAGCGTTG+AGG 0.638976 3.2:+56868739 MS.gene049491:CDS
AATTCCGATGACATTTCGAG+TGG 0.640824 3.2:-56867728 None:intergenic
GGTGGCGCGACAGCGCGTGT+CGG 0.641889 3.2:+56867946 MS.gene049491:CDS
TACGAAATTCGGTAAGTCAG+AGG 0.642084 3.2:+56868473 MS.gene049491:CDS
TGTTTGATGAAATGCTTCTG+AGG 0.642685 3.2:-56867792 None:intergenic
AAAGTTTCAACATCAAGCTG+AGG 0.647451 3.2:-56867997 None:intergenic
TGGACTGGAAAACTATTGAG+GGG 0.648535 3.2:+56868781 MS.gene049491:CDS
AACTATTGAGGGGATTGCGG+AGG 0.649646 3.2:+56868791 MS.gene049491:CDS
GGAGTGGAAGAGAAAAGGGG+AGG 0.653001 3.2:-56867651 None:intergenic
GTTTGATGAAATGCTTCTGA+GGG 0.654100 3.2:-56867791 None:intergenic
GGTGTTAATGTTCAAATTGG+GGG 0.656721 3.2:+56868339 MS.gene049491:CDS
TTATAAGGAGATAATATCGA+CGG 0.657390 3.2:-56868516 None:intergenic
AACAACATCAGCATCCAGAA+CGG 0.662007 3.2:-56868559 None:intergenic
TCATAAGCTAAAGAACAAGA+CGG 0.675342 3.2:-56868819 None:intergenic
TGCCTAATACTGCTCAGCGG+AGG 0.682943 3.2:+56868661 MS.gene049491:CDS
CGTCGGTTGTTAAAGCAAGG+AGG 0.723269 3.2:+56868912 MS.gene049491:CDS
CCACAACGTTATGACCGGAG+CGG 0.752480 3.2:-56867915 None:intergenic
ACGTGCCTAATACTGCTCAG+CGG 0.796656 3.2:+56868658 MS.gene049491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTGATAAAACTTATA+AGG - chr3.2:56868534-56868553 None:intergenic 10.0%
!!! TTGTTTTGAATAATTATGAT+TGG + chr3.2:56868136-56868155 MS.gene049491:CDS 15.0%
!!! ACATTCAACTCTTTAAATTT+TGG - chr3.2:56868084-56868103 None:intergenic 20.0%
!!! TTTATTGGATTTTCTGAAAA+GGG + chr3.2:56868173-56868192 MS.gene049491:CDS 20.0%
!!! TTTTGAATAATTATGATTGG+TGG + chr3.2:56868139-56868158 MS.gene049491:CDS 20.0%
! TTATAAGGAGATAATATCGA+CGG - chr3.2:56868519-56868538 None:intergenic 25.0%
! TTGTATTTGTTTCAGAATGA+GGG + chr3.2:56868318-56868337 MS.gene049491:CDS 25.0%
! TTTAAAGAGTTGAATGTGAA+TGG + chr3.2:56868087-56868106 MS.gene049491:CDS 25.0%
! TTTACTTATCAGTTATTGCA+AGG + chr3.2:56868285-56868304 MS.gene049491:CDS 25.0%
! TTTGTATTTGTTTCAGAATG+AGG + chr3.2:56868317-56868336 MS.gene049491:CDS 25.0%
!! AACAAATTTGGTAACTTCTT+CGG - chr3.2:56868691-56868710 None:intergenic 25.0%
!! AAGTTACCAAATTTGTTCAT+GGG + chr3.2:56868694-56868713 MS.gene049491:CDS 25.0%
!! AATCCACAGTAGATTTTTAA+GGG - chr3.2:56867829-56867848 None:intergenic 25.0%
!!! GTTTATTGGATTTTCTGAAA+AGG + chr3.2:56868172-56868191 MS.gene049491:CDS 25.0%
AAAAGTGATGGTACGAAATT+CGG + chr3.2:56868462-56868481 MS.gene049491:CDS 30.0%
AAGAGGAAATGTTAAACCAT+AGG - chr3.2:56868436-56868455 None:intergenic 30.0%
ATCTGCAGGAAAAAAGAATA+AGG + chr3.2:56869019-56869038 MS.gene049491:CDS 30.0%
ATTGATTAGGAAGATATTGC+AGG + chr3.2:56868398-56868417 MS.gene049491:CDS 30.0%
GAGTAGATAGTGAAAATAAG+AGG + chr3.2:56868955-56868974 MS.gene049491:CDS 30.0%
TAGTGAAAATAAGAGGATTG+AGG + chr3.2:56868962-56868981 MS.gene049491:CDS 30.0%
TATTGATGAGATAGTGAAGT+TGG + chr3.2:56868611-56868630 MS.gene049491:CDS 30.0%
TCATAAGCTAAAGAACAAGA+CGG - chr3.2:56868822-56868841 None:intergenic 30.0%
TGTTCTTGAAGCAAAATTTG+TGG - chr3.2:56867566-56867585 None:intergenic 30.0%
TTGCATTTGGGCAATTTATT+GGG + chr3.2:56867868-56867887 MS.gene049491:CDS 30.0%
! AGGGTGTTAATGTTCAAATT+GGG + chr3.2:56868337-56868356 MS.gene049491:CDS 30.0%
! AGTTACCAAATTTGTTCATG+GGG + chr3.2:56868695-56868714 MS.gene049491:CDS 30.0%
! GAAGTTACCAAATTTGTTCA+TGG + chr3.2:56868693-56868712 MS.gene049491:CDS 30.0%
! GAATCCACAGTAGATTTTTA+AGG - chr3.2:56867830-56867849 None:intergenic 30.0%
! GTGGAAAGAGTTTAGTTTAT+TGG + chr3.2:56868158-56868177 MS.gene049491:CDS 30.0%
!!! TCAATATTTTTTCTCCGTTC+TGG + chr3.2:56868545-56868564 MS.gene049491:CDS 30.0%
!!! TCTTTTTTCCTGCAGATAAA+AGG - chr3.2:56869016-56869035 None:intergenic 30.0%
AAACACCATCAGAACAATCT+TGG + chr3.2:56868044-56868063 MS.gene049491:CDS 35.0%
AAAGTTTCAACATCAAGCTG+AGG - chr3.2:56868000-56868019 None:intergenic 35.0%
AACACCATCAGAACAATCTT+GGG + chr3.2:56868045-56868064 MS.gene049491:CDS 35.0%
AAGAGATTGGAATCTGAACA+AGG + chr3.2:56868246-56868265 MS.gene049491:CDS 35.0%
AGGAAAAAAGAATAAGGTGC+TGG + chr3.2:56869025-56869044 MS.gene049491:CDS 35.0%
ATCTTCCCCATGAACAAATT+TGG - chr3.2:56868703-56868722 None:intergenic 35.0%
CTTGCATTTGGGCAATTTAT+TGG + chr3.2:56867867-56867886 MS.gene049491:CDS 35.0%
GGGTGTTAATGTTCAAATTG+GGG + chr3.2:56868338-56868357 MS.gene049491:CDS 35.0%
GGTGTTAATGTTCAAATTGG+GGG + chr3.2:56868339-56868358 MS.gene049491:CDS 35.0%
GTTTGATGAAATGCTTCTGA+GGG - chr3.2:56867794-56867813 None:intergenic 35.0%
TCAGCTTGATGTTGAAACTT+TGG + chr3.2:56867999-56868018 MS.gene049491:CDS 35.0%
TGTTTGATGAAATGCTTCTG+AGG - chr3.2:56867795-56867814 None:intergenic 35.0%
! AAAGTTCTCCTTTTATCTGC+AGG + chr3.2:56869005-56869024 MS.gene049491:CDS 35.0%
! AAATTTGTTCATGGGGAAGA+TGG + chr3.2:56868702-56868721 MS.gene049491:CDS 35.0%
! ACTTTGGAGAGGAATACTTT+AGG + chr3.2:56868015-56868034 MS.gene049491:CDS 35.0%
! CCTCTTTTGTTGAAAAGTGA+TGG + chr3.2:56868450-56868469 MS.gene049491:CDS 35.0%
! CTTTCAATGTTTTTCCCAGA+CGG - chr3.2:56867976-56867995 None:intergenic 35.0%
! GTTGATCTTTCTGTTTCTTC+TGG + chr3.2:56868864-56868883 MS.gene049491:CDS 35.0%
! GTTGGTAAATATGCTAGAGT+AGG + chr3.2:56868195-56868214 MS.gene049491:CDS 35.0%
! TTGATGTTGAAACTTTGGAG+AGG + chr3.2:56868004-56868023 MS.gene049491:CDS 35.0%
! TTGGACTGGAAAACTATTGA+GGG + chr3.2:56868780-56868799 MS.gene049491:CDS 35.0%
! TTTCAATGTTTTTCCCAGAC+GGG - chr3.2:56867975-56867994 None:intergenic 35.0%
!! CCATCACTTTTCAACAAAAG+AGG - chr3.2:56868453-56868472 None:intergenic 35.0%
!! CGATGTTTTGAATCAGTCTT+TGG + chr3.2:56868842-56868861 MS.gene049491:CDS 35.0%
!! GAGGGTGTTAATGTTCAAAT+TGG + chr3.2:56868336-56868355 MS.gene049491:CDS 35.0%
!! GATTTTTAAGGGTGCATTGA+TGG - chr3.2:56867818-56867837 None:intergenic 35.0%
!! TTGGATTTTCTGAAAAGGGT+TGG + chr3.2:56868177-56868196 MS.gene049491:CDS 35.0%
AAACGGAGTGGAAGAGAAAA+GGG - chr3.2:56867658-56867677 None:intergenic 40.0%
AAATTCGGTAAGTCAGAGGA+TGG + chr3.2:56868477-56868496 MS.gene049491:CDS 40.0%
AAATTGGGGGTAGTGATCAA+TGG + chr3.2:56868352-56868371 MS.gene049491:CDS 40.0%
AACAACATCAGCATCCAGAA+CGG - chr3.2:56868562-56868581 None:intergenic 40.0%
AAGATATTGCAGGTAGAAGG+TGG + chr3.2:56868408-56868427 MS.gene049491:CDS 40.0%
AATTCCGATGACATTTCGAG+TGG - chr3.2:56867731-56867750 None:intergenic 40.0%
AATTGGGGGTAGTGATCAAT+GGG + chr3.2:56868353-56868372 MS.gene049491:CDS 40.0%
AGGAAGATATTGCAGGTAGA+AGG + chr3.2:56868405-56868424 MS.gene049491:CDS 40.0%
AGGTGTGAAGAAGAAAGAGA+GGG - chr3.2:56867634-56867653 None:intergenic 40.0%
AGTAGGTTCAATGATGGCTA+AGG + chr3.2:56868212-56868231 MS.gene049491:CDS 40.0%
ATCGGAATTCTCGAAGAAAG+AGG + chr3.2:56867742-56867761 MS.gene049491:CDS 40.0%
ATGGTTTGAACGAAGCTCTT+AGG + chr3.2:56868721-56868740 MS.gene049491:CDS 40.0%
ATTGCCCAAATGCAAGCTTT+CGG - chr3.2:56867863-56867882 None:intergenic 40.0%
CAAACCACTCGAAATGTCAT+CGG + chr3.2:56867724-56867743 MS.gene049491:CDS 40.0%
CAATGGGGTAATATAACTGC+TGG + chr3.2:56868369-56868388 MS.gene049491:CDS 40.0%
CTGCTGGAACTGAATTGATT+AGG + chr3.2:56868385-56868404 MS.gene049491:CDS 40.0%
GAAAACTATTGAGGGGATTG+CGG + chr3.2:56868788-56868807 MS.gene049491:CDS 40.0%
GAAGAAAGAGAGGGTTTGAA+TGG - chr3.2:56867625-56867644 None:intergenic 40.0%
GCACCCTTAAAAATCTACTG+TGG + chr3.2:56867823-56867842 MS.gene049491:CDS 40.0%
TACGAAATTCGGTAAGTCAG+AGG + chr3.2:56868473-56868492 MS.gene049491:CDS 40.0%
TCGGAATTCTCGAAGAAAGA+GGG + chr3.2:56867743-56867762 MS.gene049491:CDS 40.0%
TGATGAGATAGTGAAGTTGG+AGG + chr3.2:56868614-56868633 MS.gene049491:CDS 40.0%
TGCAGGTTGTTCTTGTGAAA+CGG - chr3.2:56867675-56867694 None:intergenic 40.0%
TGCTAGAGTAGGTTCAATGA+TGG + chr3.2:56868206-56868225 MS.gene049491:CDS 40.0%
TGGTTTGAACGAAGCTCTTA+GGG + chr3.2:56868722-56868741 MS.gene049491:CDS 40.0%
TTCTGGATGCTGATGTTGTT+TGG + chr3.2:56868562-56868581 MS.gene049491:CDS 40.0%
! ATGACATTTCGAGTGGTTTG+AGG - chr3.2:56867724-56867743 None:intergenic 40.0%
! GTTGGACTGGAAAACTATTG+AGG + chr3.2:56868779-56868798 MS.gene049491:CDS 40.0%
! TGGACTGGAAAACTATTGAG+GGG + chr3.2:56868781-56868800 MS.gene049491:CDS 40.0%
!! GGAAAGTGTTAGGAAGAGAT+TGG + chr3.2:56868233-56868252 MS.gene049491:CDS 40.0%
!! TGATGGCTAAGGAAAGTGTT+AGG + chr3.2:56868223-56868242 MS.gene049491:CDS 40.0%
!! TTTGAGGTTGTTGGTGATGT+TGG - chr3.2:56867708-56867727 None:intergenic 40.0%
AAATGCAAGCTTTCGGCAGT+TGG - chr3.2:56867856-56867875 None:intergenic 45.0%
AACGGAGTGGAAGAGAAAAG+GGG - chr3.2:56867657-56867676 None:intergenic 45.0%
AACTGCCGAAAGCTTGCATT+TGG + chr3.2:56867855-56867874 MS.gene049491:CDS 45.0%
AATGCAAGCTTTCGGCAGTT+GGG - chr3.2:56867855-56867874 None:intergenic 45.0%
ACGACCCAAGATTGTTCTGA+TGG - chr3.2:56868052-56868071 None:intergenic 45.0%
ACTGCCGAAAGCTTGCATTT+GGG + chr3.2:56867856-56867875 MS.gene049491:CDS 45.0%
AGTCAGAGGATGGTGCAATT+TGG + chr3.2:56868487-56868506 MS.gene049491:CDS 45.0%
AGTTGGAGGAAGAGATGAAG+AGG + chr3.2:56868628-56868647 MS.gene049491:CDS 45.0%
ATTGGGGGTAGTGATCAATG+GGG + chr3.2:56868354-56868373 MS.gene049491:CDS 45.0%
GAAACGGAGTGGAAGAGAAA+AGG - chr3.2:56867659-56867678 None:intergenic 45.0%
GAGGTGTGAAGAAGAAAGAG+AGG - chr3.2:56867635-56867654 None:intergenic 45.0%
GATTGAGGCAGCTGATATAG+TGG + chr3.2:56868977-56868996 MS.gene049491:CDS 45.0%
GTTGTTCTTGTGAAACGGAG+TGG - chr3.2:56867670-56867689 None:intergenic 45.0%
TCCAACTTTGTCTCAGATCC+CGG - chr3.2:56868765-56868784 None:intergenic 45.0%
TGGGTCTCATTGTTCTCTCT+TGG + chr3.2:56867887-56867906 MS.gene049491:CDS 45.0%
! AATGCTTCTGAGGGAATCGT+TGG - chr3.2:56867785-56867804 None:intergenic 45.0%
! GATCTGAGACAAAGTTGGAC+TGG + chr3.2:56868766-56868785 MS.gene049491:CDS 45.0%
! TTCGAGTGGTTTGAGGTTGT+TGG - chr3.2:56867717-56867736 None:intergenic 45.0%
!! CATAACGTTGTGGCGTTGAT+CGG + chr3.2:56867925-56867944 MS.gene049491:CDS 45.0%
!! GTTGTTGGTGATGTTGGTGT+TGG - chr3.2:56867702-56867721 None:intergenic 45.0%
AACTATTGAGGGGATTGCGG+AGG + chr3.2:56868791-56868810 MS.gene049491:CDS 50.0%
ACGTGCCTAATACTGCTCAG+CGG + chr3.2:56868658-56868677 MS.gene049491:CDS 50.0%
CAACGCCACAACGTTATGAC+CGG - chr3.2:56867923-56867942 None:intergenic 50.0%
CAGGTAGAAGGTGGTACCTA+TGG + chr3.2:56868417-56868436 MS.gene049491:CDS 50.0%
GCAGTATTAGGCACGTATCC+AGG - chr3.2:56868654-56868673 None:intergenic 50.0%
! CGTCGGTTGTTAAAGCAAGG+AGG + chr3.2:56868912-56868931 MS.gene049491:CDS 50.0%
! GAGGCAGCTGATATAGTGGA+TGG + chr3.2:56868981-56869000 MS.gene049491:CDS 50.0%
!! ATGTTGGTGTTGGAGAGTGC+AGG - chr3.2:56867692-56867711 None:intergenic 50.0%
ACAGCAAATCTGCTGCGCGT+CGG + chr3.2:56868895-56868914 MS.gene049491:CDS 55.0%
AGCCTCCGCTGAGCAGTATT+AGG - chr3.2:56868666-56868685 None:intergenic 55.0%
CCACAACGTTATGACCGGAG+CGG - chr3.2:56867918-56867937 None:intergenic 55.0%
GAGGAAGAGATGAAGAGGCC+TGG + chr3.2:56868633-56868652 MS.gene049491:CDS 55.0%
GGAGTGGAAGAGAAAAGGGG+AGG - chr3.2:56867654-56867673 None:intergenic 55.0%
TGCCTAATACTGCTCAGCGG+AGG + chr3.2:56868661-56868680 MS.gene049491:CDS 55.0%
! GCCGGGATCTGAGACAAAGT+TGG + chr3.2:56868761-56868780 MS.gene049491:CDS 55.0%
!! AACGTTGTGGCGTTGATCGG+TGG + chr3.2:56867928-56867947 MS.gene049491:CDS 55.0%
!! GCGCGTCGGTTGTTAAAGCA+AGG + chr3.2:56868909-56868928 MS.gene049491:CDS 55.0%
!! TTAGGGCGACTGAAGCGTTG+AGG + chr3.2:56868739-56868758 MS.gene049491:CDS 55.0%
CAACGTTATGACCGGAGCGG+CGG - chr3.2:56867915-56867934 None:intergenic 60.0%
CCGCTCCGGTCATAACGTTG+TGG + chr3.2:56867915-56867934 MS.gene049491:CDS 60.0%
CTCTCTTGGTTCCGCCGCTC+CGG + chr3.2:56867901-56867920 MS.gene049491:CDS 65.0%
!! GCGACTGAAGCGTTGAGGCC+GGG + chr3.2:56868744-56868763 MS.gene049491:CDS 65.0%
!! GGCGACTGAAGCGTTGAGGC+CGG + chr3.2:56868743-56868762 MS.gene049491:CDS 65.0%
! CGCGTGTCGGTGACCCGTCT+GGG + chr3.2:56867959-56867978 MS.gene049491:CDS 70.0%
GGTGGCGCGACAGCGCGTGT+CGG + chr3.2:56867946-56867965 MS.gene049491:CDS 75.0%
! GCGCGTGTCGGTGACCCGTC+TGG + chr3.2:56867958-56867977 MS.gene049491:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 56867559 56869061 56867559 ID=MS.gene049491
chr3.2 mRNA 56867559 56869061 56867559 ID=MS.gene049491.t1;Parent=MS.gene049491
chr3.2 exon 56867559 56869061 56867559 ID=MS.gene049491.t1.exon1;Parent=MS.gene049491.t1
chr3.2 CDS 56867559 56869061 56867559 ID=cds.MS.gene049491.t1;Parent=MS.gene049491.t1
Gene Sequence

>MS.gene049491

ATGGCCACAAATTTTGCTTCAAGAACAATTTTCTTCTCTCATTCTATCAAACTCTTAATCTTTCCATTCAAACCCTCTCTTTCTTCTTCACACCTCCCCTTTTCTCTTCCACTCCGTTTCACAAGAACAACCTGCACTCTCCAACACCAACATCACCAACAACCTCAAACCACTCGAAATGTCATCGGAATTCTCGAAGAAAGAGGGTTATTAGACTCATTAACCAACGATTCCCTCAGAAGCATTTCATCAAACACCATCAATGCACCCTTAAAAATCTACTGTGGATTCGACCCAACTGCCGAAAGCTTGCATTTGGGCAATTTATTGGGTCTCATTGTTCTCTCTTGGTTCCGCCGCTCCGGTCATAACGTTGTGGCGTTGATCGGTGGCGCGACAGCGCGTGTCGGTGACCCGTCTGGGAAAAACATTGAAAGACCTCAGCTTGATGTTGAAACTTTGGAGAGGAATACTTTAGGCATTGAAAACACCATCAGAACAATCTTGGGTCGTTCTCAAAATCCAAAATTTAAAGAGTTGAATGTGAATGGTAATGAATTTTGTGATGATTCTGTTGTTGTTTTGAATAATTATGATTGGTGGAAAGAGTTTAGTTTATTGGATTTTCTGAAAAGGGTTGGTAAATATGCTAGAGTAGGTTCAATGATGGCTAAGGAAAGTGTTAGGAAGAGATTGGAATCTGAACAAGGAATGAGTTATACTGAATTTACTTATCAGTTATTGCAAGGTTATGATTTTTTGTATTTGTTTCAGAATGAGGGTGTTAATGTTCAAATTGGGGGTAGTGATCAATGGGGTAATATAACTGCTGGAACTGAATTGATTAGGAAGATATTGCAGGTAGAAGGTGGTACCTATGGTTTAACATTTCCTCTTTTGTTGAAAAGTGATGGTACGAAATTCGGTAAGTCAGAGGATGGTGCAATTTGGTTGTCTCCGTCGATATTATCTCCTTATAAGTTTTATCAATATTTTTTCTCCGTTCTGGATGCTGATGTTGTTTGGTTTTTGAAAGTTCTTACTTTTTTGAATATTGATGAGATAGTGAAGTTGGAGGAAGAGATGAAGAGGCCTGGATACGTGCCTAATACTGCTCAGCGGAGGCTTGCCGAAGAAGTTACCAAATTTGTTCATGGGGAAGATGGTTTGAACGAAGCTCTTAGGGCGACTGAAGCGTTGAGGCCGGGATCTGAGACAAAGTTGGACTGGAAAACTATTGAGGGGATTGCGGAGGATGTTCCGTCTTGTTCTTTAGCTTATGACGATGTTTTGAATCAGTCTTTGGTTGATCTTTCTGTTTCTTCTGGTTTGTTTGACAGCAAATCTGCTGCGCGTCGGTTGTTAAAGCAAGGAGGTGTTTACTTGAATAACAGCAGAGTAGATAGTGAAAATAAGAGGATTGAGGCAGCTGATATAGTGGATGGTAAAGTTCTCCTTTTATCTGCAGGAAAAAAGAATAAGGTGCTGGTGCGAATAGCATAA

Protein sequence

>MS.gene049491.t1

MATNFASRTIFFSHSIKLLIFPFKPSLSSSHLPFSLPLRFTRTTCTLQHQHHQQPQTTRNVIGILEERGLLDSLTNDSLRSISSNTINAPLKIYCGFDPTAESLHLGNLLGLIVLSWFRRSGHNVVALIGGATARVGDPSGKNIERPQLDVETLERNTLGIENTIRTILGRSQNPKFKELNVNGNEFCDDSVVVLNNYDWWKEFSLLDFLKRVGKYARVGSMMAKESVRKRLESEQGMSYTEFTYQLLQGYDFLYLFQNEGVNVQIGGSDQWGNITAGTELIRKILQVEGGTYGLTFPLLLKSDGTKFGKSEDGAIWLSPSILSPYKFYQYFFSVLDADVVWFLKVLTFLNIDEIVKLEEEMKRPGYVPNTAQRRLAEEVTKFVHGEDGLNEALRATEALRPGSETKLDWKTIEGIAEDVPSCSLAYDDVLNQSLVDLSVSSGLFDSKSAARRLLKQGGVYLNNSRVDSENKRIEAADIVDGKVLLLSAGKKNKVLVRIA