Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45773.t1 | XP_003627775.1 | 97.8 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 3.00E-172 | 614.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45773.t1 | Q9ZVJ6 | 58.5 | 318 | 125 | 4 | 1 | 312 | 1 | 317 | 5.4e-98 | 359.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45773.t1 | G7LF83 | 97.8 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 2.1e-172 | 614.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene45773 | 0.801358 | 9.35E-49 | -1.69E-46 |
| MS.gene050657 | MS.gene45773 | 0.836735 | 7.86E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene45773 | 0.80815 | 3.57E-50 | -1.69E-46 |
| MS.gene050962 | MS.gene45773 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene45773 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene051490 | MS.gene45773 | 0.821798 | 3.33E-53 | -1.69E-46 |
| MS.gene051800 | MS.gene45773 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene45773 | 0.832275 | 1.04E-55 | -1.69E-46 |
| MS.gene052463 | MS.gene45773 | 0.864267 | 1.37E-64 | -1.69E-46 |
| MS.gene052493 | MS.gene45773 | 0.818189 | 2.23E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene45773 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene45773 | 0.832753 | 7.89E-56 | -1.69E-46 |
| MS.gene054576 | MS.gene45773 | 0.812673 | 3.77E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene45773 | 0.801702 | 7.95E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene45773 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene45773 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene45773 | 0.801283 | 9.69E-49 | -1.69E-46 |
| MS.gene05552 | MS.gene45773 | 0.811381 | 7.20E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene45773 | 0.838759 | 2.38E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene45773 | 0.802693 | 4.97E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene45773 | 0.83991 | 1.19E-57 | -1.69E-46 |
| MS.gene056196 | MS.gene45773 | 0.862115 | 6.37E-64 | -1.69E-46 |
| MS.gene05686 | MS.gene45773 | 0.817477 | 3.23E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene45773 | 0.819999 | 8.65E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene45773 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene45773 | 0.855523 | 5.96E-62 | -1.69E-46 |
| MS.gene059625 | MS.gene45773 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene45773 | 0.808541 | 2.94E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene45773 | 0.802522 | 5.39E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene45773 | 0.808591 | 2.87E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene45773 | 0.800495 | 1.40E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene45773 | 0.805727 | 1.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45773 | MS.gene016642 | PPI |
| MS.gene45773 | MS.gene056195 | PPI |
| MS.gene45773 | MS.gene45772 | PPI |
| MS.gene45773 | MS.gene92405 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45773.t1 | MTR_8g038170 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 636 |
| MS.gene45773.t1 | MTR_8g038170 | 97.771 | 314 | 7 | 0 | 1 | 314 | 1 | 314 | 0.0 | 636 |
| MS.gene45773.t1 | MTR_5g063670 | 39.117 | 317 | 166 | 6 | 4 | 311 | 14 | 312 | 5.44e-62 | 199 |
| MS.gene45773.t1 | MTR_8g038150 | 36.646 | 322 | 174 | 8 | 4 | 313 | 14 | 317 | 4.31e-58 | 189 |
| MS.gene45773.t1 | MTR_8g038220 | 38.170 | 317 | 169 | 8 | 5 | 312 | 13 | 311 | 4.76e-58 | 189 |
| MS.gene45773.t1 | MTR_8g038220 | 38.535 | 314 | 166 | 8 | 8 | 312 | 17 | 312 | 2.25e-57 | 187 |
| MS.gene45773.t1 | MTR_3g018780 | 37.224 | 317 | 172 | 8 | 5 | 312 | 14 | 312 | 7.44e-56 | 184 |
| MS.gene45773.t1 | MTR_2g031980 | 36.190 | 315 | 176 | 6 | 5 | 311 | 14 | 311 | 1.07e-53 | 178 |
| MS.gene45773.t1 | MTR_3g018790 | 35.962 | 317 | 176 | 7 | 5 | 312 | 14 | 312 | 1.15e-53 | 178 |
| MS.gene45773.t1 | MTR_8g038180 | 37.107 | 318 | 173 | 8 | 5 | 313 | 14 | 313 | 2.00e-53 | 177 |
| MS.gene45773.t1 | MTR_8g038210 | 36.792 | 318 | 173 | 8 | 4 | 312 | 13 | 311 | 2.49e-50 | 169 |
| MS.gene45773.t1 | MTR_8g038210 | 36.278 | 317 | 174 | 8 | 5 | 312 | 14 | 311 | 1.04e-48 | 165 |
| MS.gene45773.t1 | MTR_0276s0050 | 35.220 | 318 | 179 | 6 | 4 | 312 | 14 | 313 | 2.31e-47 | 162 |
| MS.gene45773.t1 | MTR_3g018790 | 38.367 | 245 | 136 | 5 | 76 | 312 | 21 | 258 | 2.54e-45 | 155 |
| MS.gene45773.t1 | MTR_6g071605 | 31.715 | 309 | 188 | 7 | 10 | 311 | 20 | 312 | 5.61e-37 | 134 |
| MS.gene45773.t1 | MTR_8g107640 | 30.968 | 310 | 189 | 6 | 10 | 311 | 20 | 312 | 7.08e-36 | 132 |
| MS.gene45773.t1 | MTR_1g033560 | 29.245 | 318 | 194 | 7 | 5 | 311 | 15 | 312 | 5.98e-35 | 129 |
| MS.gene45773.t1 | MTR_6g071615 | 31.392 | 309 | 189 | 6 | 10 | 311 | 20 | 312 | 1.85e-33 | 125 |
| MS.gene45773.t1 | MTR_6g071595 | 30.097 | 309 | 193 | 6 | 10 | 311 | 20 | 312 | 1.34e-32 | 123 |
| MS.gene45773.t1 | MTR_1g112520 | 29.773 | 309 | 194 | 6 | 10 | 311 | 20 | 312 | 5.61e-30 | 116 |
| MS.gene45773.t1 | MTR_6g028030 | 26.174 | 298 | 201 | 6 | 24 | 312 | 23 | 310 | 2.06e-25 | 103 |
| MS.gene45773.t1 | MTR_3g018920 | 31.429 | 210 | 96 | 4 | 5 | 213 | 14 | 176 | 2.95e-21 | 89.4 |
| MS.gene45773.t1 | MTR_6g071595 | 26.122 | 245 | 160 | 4 | 10 | 247 | 20 | 250 | 1.92e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45773.t1 | AT2G38750 | 58.491 | 318 | 125 | 4 | 1 | 312 | 1 | 317 | 4.23e-128 | 368 |
| MS.gene45773.t1 | AT2G38750 | 59.000 | 300 | 119 | 3 | 16 | 312 | 2 | 300 | 4.54e-124 | 357 |
| MS.gene45773.t1 | AT1G35720 | 38.750 | 320 | 168 | 7 | 2 | 311 | 12 | 313 | 1.54e-62 | 201 |
| MS.gene45773.t1 | AT5G12380 | 37.107 | 318 | 173 | 6 | 5 | 313 | 14 | 313 | 1.86e-59 | 193 |
| MS.gene45773.t1 | AT5G10230 | 39.557 | 316 | 164 | 8 | 5 | 311 | 15 | 312 | 5.17e-57 | 187 |
| MS.gene45773.t1 | AT5G65020 | 38.095 | 315 | 169 | 6 | 8 | 313 | 18 | 315 | 2.21e-56 | 185 |
| MS.gene45773.t1 | AT5G10220 | 38.679 | 318 | 166 | 9 | 5 | 311 | 15 | 314 | 3.12e-54 | 179 |
| MS.gene45773.t1 | AT5G65020 | 37.338 | 308 | 167 | 6 | 15 | 313 | 10 | 300 | 1.72e-53 | 177 |
| MS.gene45773.t1 | AT2G38760 | 36.957 | 322 | 170 | 9 | 5 | 311 | 15 | 318 | 6.87e-52 | 174 |
| MS.gene45773.t1 | AT1G68090 | 30.032 | 313 | 193 | 8 | 8 | 311 | 18 | 313 | 1.06e-37 | 136 |
| MS.gene45773.t1 | AT1G68090 | 29.960 | 247 | 151 | 6 | 8 | 246 | 18 | 250 | 7.81e-27 | 106 |
Find 65 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATTCCACCTTTGAAAT+TGG | 0.200455 | 8.3:+58681558 | None:intergenic |
| TGATAGCAGTATTGGGAAAA+TGG | 0.220899 | 8.3:-58681646 | MS.gene45773:CDS |
| ATGAAATTGAGCCTTTCTTT+AGG | 0.253678 | 8.3:+58680047 | None:intergenic |
| GCTGAGTATAACAACTTATA+TGG | 0.300228 | 8.3:-58678545 | MS.gene45773:CDS |
| TGAAATTGAGCCTTTCTTTA+GGG | 0.301910 | 8.3:+58680048 | None:intergenic |
| AAGCACTATAAAGAGATTTC+TGG | 0.312193 | 8.3:-58679017 | MS.gene45773:CDS |
| GCTAGGATCTTAATGACTTA+AGG | 0.319355 | 8.3:-58678814 | MS.gene45773:intron |
| CCTTGGAGAGAGAATCTTAT+AGG | 0.322567 | 8.3:-58681619 | MS.gene45773:CDS |
| AATGGCATTGGAAAGTGTTT+TGG | 0.322849 | 8.3:+58679130 | None:intergenic |
| CTTTGTTCCTTCATATCTAT+AGG | 0.341085 | 8.3:+58679181 | None:intergenic |
| TAGGGCCTCCTTTGCTAAAC+GGG | 0.358027 | 8.3:+58680066 | None:intergenic |
| TTGAGGATGATGAAGTAATA+AGG | 0.375348 | 8.3:-58679082 | MS.gene45773:CDS |
| AAGAACTTCAGAGGAACTAT+TGG | 0.389710 | 8.3:-58679996 | MS.gene45773:CDS |
| CATTGATATGAAGGAGATAA+AGG | 0.391945 | 8.3:-58678567 | MS.gene45773:CDS |
| TTAGGGCCTCCTTTGCTAAA+CGG | 0.396020 | 8.3:+58680065 | None:intergenic |
| TGATGAAGTAATAAGGATAT+TGG | 0.398287 | 8.3:-58679075 | MS.gene45773:CDS |
| ACTTCATCATCCTCAACAAT+TGG | 0.409615 | 8.3:+58679089 | None:intergenic |
| ATCAGAATGCAGTGGTACTT+TGG | 0.415533 | 8.3:-58680114 | MS.gene45773:intron |
| GAAATCATTGATAGCAGTAT+TGG | 0.428113 | 8.3:-58681654 | MS.gene45773:CDS |
| TACTTTGGAGCATGCACCCT+TGG | 0.428758 | 8.3:-58680099 | MS.gene45773:CDS |
| TTGAGCATTCTTAATGGCAT+TGG | 0.429639 | 8.3:+58679118 | None:intergenic |
| GCTTTAACTCAAGCTTTCTC+AGG | 0.434534 | 8.3:-58681838 | MS.gene45773:intron |
| AAATCATTGATAGCAGTATT+GGG | 0.456697 | 8.3:-58681653 | MS.gene45773:CDS |
| AAGAAAGGCTCAATTTCATA+TGG | 0.467362 | 8.3:-58680043 | MS.gene45773:CDS |
| GATAGCAGTATTGGGAAAAT+GGG | 0.474695 | 8.3:-58681645 | MS.gene45773:CDS |
| CAGAGGAACTATTGGGAGCT+AGG | 0.478123 | 8.3:-58679988 | MS.gene45773:CDS |
| AAAATTGAAGAGACTGCTAA+AGG | 0.486337 | 8.3:-58678506 | MS.gene45773:CDS |
| AGATGCAACATCTTCTTCAA+TGG | 0.491454 | 8.3:+58679937 | None:intergenic |
| ACTTTGGAGCATGCACCCTT+GGG | 0.496345 | 8.3:-58680098 | MS.gene45773:CDS |
| TTAGCCTCCTCTAGCAATCA+AGG | 0.503479 | 8.3:+58678460 | None:intergenic |
| TAGAGCTGACATTGATATGA+AGG | 0.504202 | 8.3:-58678576 | MS.gene45773:CDS |
| TGGAATGGTCAAAGAGAGAA+TGG | 0.508195 | 8.3:+58679957 | None:intergenic |
| AGAACTTCAGAGGAACTATT+GGG | 0.510234 | 8.3:-58679995 | MS.gene45773:CDS |
| CATCCATGGCAATGATAGAA+AGG | 0.512366 | 8.3:-58679912 | MS.gene45773:intron |
| ATTGGGAAAATGGGATCCCT+TGG | 0.515294 | 8.3:-58681636 | MS.gene45773:CDS |
| AAATTGAAGAGACTGCTAAA+GGG | 0.525725 | 8.3:-58678505 | MS.gene45773:CDS |
| GTACCTTTCTATCATTGCCA+TGG | 0.525824 | 8.3:+58679909 | None:intergenic |
| GCAAAGGAGGCCCTAAAGAA+AGG | 0.525905 | 8.3:-58680058 | MS.gene45773:CDS |
| GTGAGTGCCTATAGATATGA+AGG | 0.526990 | 8.3:-58679188 | MS.gene45773:CDS |
| CAACATCTTCTTCAATGGAA+TGG | 0.529527 | 8.3:+58679942 | None:intergenic |
| GGAACTATTGGGAGCTAGGA+AGG | 0.530013 | 8.3:-58679984 | MS.gene45773:CDS |
| TTGCTAACCTTGATTGCTAG+AGG | 0.531913 | 8.3:-58678467 | MS.gene45773:CDS |
| TGATGTAATTTCCAGGACAT+GGG | 0.545533 | 8.3:-58681685 | MS.gene45773:intron |
| CCTATAAGATTCTCTCTCCA+AGG | 0.548162 | 8.3:+58681619 | None:intergenic |
| AATATACTTGTGGAGTACAA+AGG | 0.574763 | 8.3:+58678771 | None:intergenic |
| ATCATGAACGCCAATTTCAA+AGG | 0.576589 | 8.3:-58681568 | MS.gene45773:CDS |
| AAACGGGCATCTCTTTCCCA+AGG | 0.580618 | 8.3:+58680082 | None:intergenic |
| GATGTTGCATCTCACATCCA+TGG | 0.585008 | 8.3:-58679926 | MS.gene45773:CDS |
| ACCTTGCTAAAATATACTTG+TGG | 0.592183 | 8.3:+58678761 | None:intergenic |
| CTATAAGATTCTCTCTCCAA+GGG | 0.593207 | 8.3:+58681620 | None:intergenic |
| ATGAACGCCAATTTCAAAGG+TGG | 0.604776 | 8.3:-58681565 | MS.gene45773:CDS |
| TTCTGGCAAGAATCTTGAAG+AGG | 0.605202 | 8.3:-58679000 | MS.gene45773:intron |
| AAGAGATGCCCGTTTAGCAA+AGG | 0.610291 | 8.3:-58680074 | MS.gene45773:CDS |
| GACTGCTAAAGGGAACTACA+AGG | 0.615438 | 8.3:-58678495 | MS.gene45773:CDS |
| TCAAAAGAAGCCAATTGTTG+AGG | 0.621583 | 8.3:-58679099 | MS.gene45773:CDS |
| TAAAATAAATCAGAATGCAG+TGG | 0.621993 | 8.3:-58680122 | MS.gene45773:intron |
| AGATGCCCGTTTAGCAAAGG+AGG | 0.622121 | 8.3:-58680071 | MS.gene45773:CDS |
| AGATGAAACTGCAAAATCAG+AGG | 0.624947 | 8.3:-58679153 | MS.gene45773:CDS |
| TGCAGCATTGAAAATTGATG+TGG | 0.633610 | 8.3:-58678639 | MS.gene45773:CDS |
| GATGTAATTTCCAGGACATG+GGG | 0.643670 | 8.3:-58681684 | MS.gene45773:intron |
| CTAACCTTGATTGCTAGAGG+AGG | 0.643976 | 8.3:-58678464 | MS.gene45773:CDS |
| CTATAGATATGAAGGAACAA+AGG | 0.657119 | 8.3:-58679180 | MS.gene45773:CDS |
| AACGGGCATCTCTTTCCCAA+GGG | 0.660396 | 8.3:+58680083 | None:intergenic |
| TGCATGCACAAGAACTTCAG+AGG | 0.660802 | 8.3:-58680005 | MS.gene45773:CDS |
| GTAATTTCCAGGACATGGGG+TGG | 0.698879 | 8.3:-58681681 | MS.gene45773:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCATTAAAAAATATGA+AGG | - | chr8.3:58679576-58679595 | MS.gene45773:intron | 10.0% |
| !! | AGAAAAACATAAAAATTTAA+TGG | + | chr8.3:58680464-58680483 | None:intergenic | 10.0% |
| !! | TATGTAGTAATAATTTAATA+TGG | + | chr8.3:58678531-58678550 | None:intergenic | 10.0% |
| !! | TTACAAAAGAAAATAAAATT+GGG | - | chr8.3:58680553-58680572 | MS.gene45773:intron | 10.0% |
| !! | TTTACAAAAGAAAATAAAAT+TGG | - | chr8.3:58680552-58680571 | MS.gene45773:intron | 10.0% |
| !!! | TAAAGAATTCTAATTTTTTT+GGG | - | chr8.3:58679519-58679538 | MS.gene45773:intron | 10.0% |
| !!! | TTAAAGAATTCTAATTTTTT+TGG | - | chr8.3:58679518-58679537 | MS.gene45773:intron | 10.0% |
| !! | AAAAATATAAAAGTTAGACA+TGG | + | chr8.3:58679358-58679377 | None:intergenic | 15.0% |
| !! | AATCAAATATTGGTATATTT+AGG | - | chr8.3:58679692-58679711 | MS.gene45773:intron | 15.0% |
| !! | AATCAAATGTTAGTATATTT+AGG | + | chr8.3:58679255-58679274 | None:intergenic | 15.0% |
| !! | AGGTTAATTAAATAAGTAAA+TGG | + | chr8.3:58679721-58679740 | None:intergenic | 15.0% |
| !! | ATCAAATATTGGTATATTTA+GGG | - | chr8.3:58679693-58679712 | MS.gene45773:intron | 15.0% |
| !! | ATCAAATGTTAGTATATTTA+GGG | + | chr8.3:58679254-58679273 | None:intergenic | 15.0% |
| !! | ATTTAATTGATGGAAAAATT+TGG | + | chr8.3:58679315-58679334 | None:intergenic | 15.0% |
| !! | TAAAATATTCTTTAGACTAT+TGG | - | chr8.3:58679285-58679304 | MS.gene45773:intron | 15.0% |
| !!! | AAATCATGATAATTTCTTTT+AGG | + | chr8.3:58680818-58680837 | None:intergenic | 15.0% |
| !!! | AATAGTCTAAAGAATATTTT+AGG | + | chr8.3:58679286-58679305 | None:intergenic | 15.0% |
| !!! | AATCTTATGGTTTTAAATTA+TGG | - | chr8.3:58680496-58680515 | MS.gene45773:intron | 15.0% |
| !!! | AGTTTTTTTTTTTTGACAAT+CGG | - | chr8.3:58679209-58679228 | MS.gene45773:intron | 15.0% |
| !!! | ATAGTCTAAAGAATATTTTA+GGG | + | chr8.3:58679285-58679304 | None:intergenic | 15.0% |
| !!! | GCATTTTTTTTTTTGTATAT+AGG | - | chr8.3:58681653-58681672 | MS.gene45773:CDS | 15.0% |
| !!! | TAATGAAATTTTTCAGAAAT+GGG | + | chr8.3:58679566-58679585 | None:intergenic | 15.0% |
| !!! | TTAATGAAATTTTTCAGAAA+TGG | + | chr8.3:58679567-58679586 | None:intergenic | 15.0% |
| !!! | TTTTAATCTATCTAATCTTA+TGG | - | chr8.3:58680483-58680502 | MS.gene45773:intron | 15.0% |
| !!! | TTTTTTTTGTATATAGGTTT+TGG | - | chr8.3:58681659-58681678 | MS.gene45773:CDS | 15.0% |
| !! | ACAAAAAAACCAAAGTAAAA+AGG | - | chr8.3:58678984-58679003 | MS.gene45773:intron | 20.0% |
| !! | ATTCATCAAATATCATCAAT+TGG | + | chr8.3:58678614-58678633 | None:intergenic | 20.0% |
| !! | TCAAATATTGGTATATTTAG+GGG | - | chr8.3:58679694-58679713 | MS.gene45773:intron | 20.0% |
| !! | TGTTATTATACAACAAAATG+AGG | + | chr8.3:58681609-58681628 | None:intergenic | 20.0% |
| !! | TTCATCAAATATCATCAATT+GGG | + | chr8.3:58678613-58678632 | None:intergenic | 20.0% |
| !!! | AAAAACAATTAGGTGTTATT+AGG | + | chr8.3:58681091-58681110 | None:intergenic | 20.0% |
| !!! | AAAACAATTAGGTGTTATTA+GGG | + | chr8.3:58681090-58681109 | None:intergenic | 20.0% |
| !!! | AACAAAAGATTTAATTTGTC+TGG | + | chr8.3:58680779-58680798 | None:intergenic | 20.0% |
| !!! | CTAGACTATAAATTGATTTT+TGG | - | chr8.3:58680654-58680673 | MS.gene45773:intron | 20.0% |
| !!! | GTTTTTTTTTTTTGACAATC+GGG | - | chr8.3:58679210-58679229 | MS.gene45773:intron | 20.0% |
| !!! | TAGTCTAAAGAATATTTTAG+GGG | + | chr8.3:58679284-58679303 | None:intergenic | 20.0% |
| !!! | TCTTTTAATAGAAATGATGA+AGG | - | chr8.3:58678903-58678922 | MS.gene45773:intron | 20.0% |
| !!! | TTCTTTTATAAGTAGTCTAA+CGG | - | chr8.3:58679771-58679790 | MS.gene45773:intron | 20.0% |
| !!! | TTTATTTATTACCTTTTGCT+AGG | - | chr8.3:58681491-58681510 | MS.gene45773:intron | 20.0% |
| ! | AAAAGTAGAGACTAATTTCA+AGG | - | chr8.3:58679617-58679636 | MS.gene45773:intron | 25.0% |
| ! | AATCGGGTTAAATAAGTTAA+TGG | - | chr8.3:58679226-58679245 | MS.gene45773:intron | 25.0% |
| ! | AATTTCGTAAGTCATATGTT+TGG | + | chr8.3:58681454-58681473 | None:intergenic | 25.0% |
| ! | AGAATAAAACTATCACAAGT+TGG | - | chr8.3:58680130-58680149 | MS.gene45773:intron | 25.0% |
| ! | ATTATACAACAAAATGAGGT+TGG | + | chr8.3:58681605-58681624 | None:intergenic | 25.0% |
| ! | GAAAATTATATTCTGTTGTG+TGG | - | chr8.3:58680152-58680171 | MS.gene45773:intron | 25.0% |
| ! | GAAGGACTAAAATCAAATAT+TGG | - | chr8.3:58679682-58679701 | MS.gene45773:intron | 25.0% |
| ! | GAATTAATGATGTAATTTCC+AGG | - | chr8.3:58678630-58678649 | MS.gene45773:CDS | 25.0% |
| ! | GATTAACCCAAAAATTAATG+TGG | + | chr8.3:58680631-58680650 | None:intergenic | 25.0% |
| ! | GGATAATACATAATTTATGC+AGG | + | chr8.3:58679855-58679874 | None:intergenic | 25.0% |
| ! | TAAAATAAATCAGAATGCAG+TGG | - | chr8.3:58680200-58680219 | MS.gene45773:intron | 25.0% |
| ! | TAATTGATGGAAAAATTTGG+AGG | + | chr8.3:58679312-58679331 | None:intergenic | 25.0% |
| ! | TACATATCATTGTCTAAGTT+TGG | + | chr8.3:58680952-58680971 | None:intergenic | 25.0% |
| ! | TGATGAAGTAATAAGGATAT+TGG | - | chr8.3:58681247-58681266 | MS.gene45773:intron | 25.0% |
| !! | AAAACATGTCCTTTTTACTT+TGG | + | chr8.3:58678996-58679015 | None:intergenic | 25.0% |
| !! | AAATCATTGATAGCAGTATT+GGG | - | chr8.3:58678669-58678688 | MS.gene45773:intron | 25.0% |
| !! | AGCTGTTTCAAAAAACAATT+AGG | + | chr8.3:58681101-58681120 | None:intergenic | 25.0% |
| !! | GATTGACTTTGAATAAAACT+AGG | + | chr8.3:58679741-58679760 | None:intergenic | 25.0% |
| !! | TACAATATTCTCTAGGTTTT+TGG | + | chr8.3:58679662-58679681 | None:intergenic | 25.0% |
| !! | TAGTGAAATTTTCCAGAAAT+GGG | - | chr8.3:58679378-58679397 | MS.gene45773:intron | 25.0% |
| !! | TTAGTGAAATTTTCCAGAAA+TGG | - | chr8.3:58679377-58679396 | MS.gene45773:intron | 25.0% |
| !! | TTGAAGAATTCTTTTTGCTT+TGG | + | chr8.3:58678959-58678978 | None:intergenic | 25.0% |
| !!! | AATTGAGAGATTGATTTTCA+CGG | - | chr8.3:58678863-58678882 | MS.gene45773:intron | 25.0% |
| !!! | AGTAAAAAGGACATGTTTTT+TGG | - | chr8.3:58678997-58679016 | MS.gene45773:intron | 25.0% |
| !!! | AGTCTAAAGAATATTTTAGG+GGG | + | chr8.3:58679283-58679302 | None:intergenic | 25.0% |
| !!! | ATCAAATGTTTTGAGAAATG+TGG | + | chr8.3:58680698-58680717 | None:intergenic | 25.0% |
| !!! | TCAAATGTTTTGAGAAATGT+GGG | + | chr8.3:58680697-58680716 | None:intergenic | 25.0% |
| !!! | TCTTTTGTTTTGAGAAATGT+TGG | - | chr8.3:58680790-58680809 | MS.gene45773:intron | 25.0% |
| AAAATGTCTTGCAATATGAC+AGG | - | chr8.3:58680049-58680068 | MS.gene45773:CDS | 30.0% | |
| AAAATTGAAGAGACTGCTAA+AGG | - | chr8.3:58681816-58681835 | MS.gene45773:intron | 30.0% | |
| AAATTGAAGAGACTGCTAAA+GGG | - | chr8.3:58681817-58681836 | MS.gene45773:intron | 30.0% | |
| AACCTAGAGAATATTGTAGA+AGG | - | chr8.3:58679664-58679683 | MS.gene45773:intron | 30.0% | |
| AAGAAAGGCTCAATTTCATA+TGG | - | chr8.3:58680279-58680298 | MS.gene45773:intron | 30.0% | |
| AAGCACTATAAAGAGATTTC+TGG | - | chr8.3:58681305-58681324 | MS.gene45773:intron | 30.0% | |
| AATATACTTGTGGAGTACAA+AGG | + | chr8.3:58681554-58681573 | None:intergenic | 30.0% | |
| ACCCAAAAATTAATGTGGAT+CGG | + | chr8.3:58680626-58680645 | None:intergenic | 30.0% | |
| ACCTTGCTAAAATATACTTG+TGG | + | chr8.3:58681564-58681583 | None:intergenic | 30.0% | |
| ATGAAAAAGTCAACACACAA+GGG | + | chr8.3:58680179-58680198 | None:intergenic | 30.0% | |
| ATGAAATTGAGCCTTTCTTT+AGG | + | chr8.3:58680278-58680297 | None:intergenic | 30.0% | |
| ATGCTAAAATACAGGTCAAA+TGG | - | chr8.3:58680865-58680884 | MS.gene45773:intron | 30.0% | |
| CATTGATATGAAGGAGATAA+AGG | - | chr8.3:58681755-58681774 | MS.gene45773:intron | 30.0% | |
| CTATAGATATGAAGGAACAA+AGG | - | chr8.3:58681142-58681161 | MS.gene45773:intron | 30.0% | |
| CTTTGTTCCTTCATATCTAT+AGG | + | chr8.3:58681144-58681163 | None:intergenic | 30.0% | |
| GCTGAGTATAACAACTTATA+TGG | - | chr8.3:58681777-58681796 | MS.gene45773:intron | 30.0% | |
| GTAGGGACTAATTTAATTGA+TGG | + | chr8.3:58679325-58679344 | None:intergenic | 30.0% | |
| TACATAATTTATGCAGGTGT+CGG | + | chr8.3:58679849-58679868 | None:intergenic | 30.0% | |
| TCTAAATACACTTAGTGGTA+GGG | + | chr8.3:58680923-58680942 | None:intergenic | 30.0% | |
| TGAAATTGAGCCTTTCTTTA+GGG | + | chr8.3:58680277-58680296 | None:intergenic | 30.0% | |
| TGCTAAAATACAGGTCAAAT+GGG | - | chr8.3:58680866-58680885 | MS.gene45773:intron | 30.0% | |
| TGTTAGATTTCTAAGCTTCT+AGG | - | chr8.3:58681002-58681021 | MS.gene45773:intron | 30.0% | |
| TTCAATCCATGCTAAAATAC+AGG | - | chr8.3:58680857-58680876 | MS.gene45773:intron | 30.0% | |
| TTCTAAATACACTTAGTGGT+AGG | + | chr8.3:58680924-58680943 | None:intergenic | 30.0% | |
| TTGAGGATGATGAAGTAATA+AGG | - | chr8.3:58681240-58681259 | MS.gene45773:intron | 30.0% | |
| ! | CAAGGATGGAAAATTTTAGA+GGG | - | chr8.3:58679635-58679654 | MS.gene45773:intron | 30.0% |
| ! | CATAATTTTCTACCCATTTC+TGG | + | chr8.3:58679393-58679412 | None:intergenic | 30.0% |
| ! | CGTTTTCTAAATACACTTAG+TGG | + | chr8.3:58680928-58680947 | None:intergenic | 30.0% |
| ! | CTTCTTTTGAGCATTCTTAA+TGG | + | chr8.3:58681213-58681232 | None:intergenic | 30.0% |
| ! | GAAATCATTGATAGCAGTAT+TGG | - | chr8.3:58678668-58678687 | MS.gene45773:intron | 30.0% |
| ! | TCAAGGATGGAAAATTTTAG+AGG | - | chr8.3:58679634-58679653 | MS.gene45773:intron | 30.0% |
| !!! | ATTTGACCTGTATTTTAGCA+TGG | + | chr8.3:58680866-58680885 | None:intergenic | 30.0% |
| !!! | TCCACAAGTATATTTTAGCA+AGG | - | chr8.3:58681560-58681579 | MS.gene45773:CDS | 30.0% |
| !!! | TTGTTTTTTGAAACAGCTCT+TGG | - | chr8.3:58681103-58681122 | MS.gene45773:intron | 30.0% |
| AAGAACTTCAGAGGAACTAT+TGG | - | chr8.3:58680326-58680345 | MS.gene45773:intron | 35.0% | |
| AATGGGATGTCATGTTAAGT+TGG | - | chr8.3:58680883-58680902 | MS.gene45773:intron | 35.0% | |
| ACACATACGAATTGTGTAGT+CGG | + | chr8.3:58680726-58680745 | None:intergenic | 35.0% | |
| ACATAATTTATGCAGGTGTC+GGG | + | chr8.3:58679848-58679867 | None:intergenic | 35.0% | |
| ACTTCATCATCCTCAACAAT+TGG | + | chr8.3:58681236-58681255 | None:intergenic | 35.0% | |
| AGAACTTCAGAGGAACTATT+GGG | - | chr8.3:58680327-58680346 | MS.gene45773:intron | 35.0% | |
| AGATGAAACTGCAAAATCAG+AGG | - | chr8.3:58681169-58681188 | MS.gene45773:intron | 35.0% | |
| AGATGCAACATCTTCTTCAA+TGG | + | chr8.3:58680388-58680407 | None:intergenic | 35.0% | |
| ATCATGAACGCCAATTTCAA+AGG | - | chr8.3:58678754-58678773 | MS.gene45773:intron | 35.0% | |
| ATGATGTAATTTCCAGGACA+TGG | - | chr8.3:58678636-58678655 | MS.gene45773:CDS | 35.0% | |
| CAACATCTTCTTCAATGGAA+TGG | + | chr8.3:58680383-58680402 | None:intergenic | 35.0% | |
| CATGAAAAAGTCAACACACA+AGG | + | chr8.3:58680180-58680199 | None:intergenic | 35.0% | |
| CCCAAAAATTAATGTGGATC+GGG | + | chr8.3:58680625-58680644 | None:intergenic | 35.0% | |
| CTATAAGATTCTCTCTCCAA+GGG | + | chr8.3:58678705-58678724 | None:intergenic | 35.0% | |
| GCTAGGATCTTAATGACTTA+AGG | - | chr8.3:58681508-58681527 | MS.gene45773:intron | 35.0% | |
| GTAGAGACTAATTTCAAGGA+TGG | - | chr8.3:58679621-58679640 | MS.gene45773:intron | 35.0% | |
| GTCATTAAGATCCTAGCAAA+AGG | + | chr8.3:58681505-58681524 | None:intergenic | 35.0% | |
| GTCCTTCTACAATATTCTCT+AGG | + | chr8.3:58679669-58679688 | None:intergenic | 35.0% | |
| TAGAGCTGACATTGATATGA+AGG | - | chr8.3:58681746-58681765 | MS.gene45773:intron | 35.0% | |
| TATCAAGTGAGCTAAACTCA+CGG | - | chr8.3:58679876-58679895 | MS.gene45773:intron | 35.0% | |
| TCAAAAGAAGCCAATTGTTG+AGG | - | chr8.3:58681223-58681242 | MS.gene45773:intron | 35.0% | |
| TGATGTAATTTCCAGGACAT+GGG | - | chr8.3:58678637-58678656 | MS.gene45773:CDS | 35.0% | |
| TTGAGCATTCTTAATGGCAT+TGG | + | chr8.3:58681207-58681226 | None:intergenic | 35.0% | |
| ! | ACATGAGTTTGTGCGTTTTA+AGG | - | chr8.3:58678806-58678825 | MS.gene45773:CDS | 35.0% |
| ! | ACCCGATCCACATTAATTTT+TGG | - | chr8.3:58680621-58680640 | MS.gene45773:intron | 35.0% |
| ! | CCCGATCCACATTAATTTTT+GGG | - | chr8.3:58680622-58680641 | MS.gene45773:intron | 35.0% |
| ! | GATAGCAGTATTGGGAAAAT+GGG | - | chr8.3:58678677-58678696 | MS.gene45773:intron | 35.0% |
| ! | TGAATTTAGCTCAGTTGGTA+CGG | + | chr8.3:58681417-58681436 | None:intergenic | 35.0% |
| ! | TGAGTTTAGCTCACTTGATA+AGG | + | chr8.3:58679876-58679895 | None:intergenic | 35.0% |
| ! | TGATAGCAGTATTGGGAAAA+TGG | - | chr8.3:58678676-58678695 | MS.gene45773:intron | 35.0% |
| ! | TGCAGCATTGAAAATTGATG+TGG | - | chr8.3:58681683-58681702 | MS.gene45773:intron | 35.0% |
| !! | GATCATTCCACCTTTGAAAT+TGG | + | chr8.3:58678767-58678786 | None:intergenic | 35.0% |
| !!! | AATGGCATTGGAAAGTGTTT+TGG | + | chr8.3:58681195-58681214 | None:intergenic | 35.0% |
| ACCTCACTTGTTCACCTTTA+AGG | + | chr8.3:58679810-58679829 | None:intergenic | 40.0% | |
| ACCTTAAAGGTGAACAAGTG+AGG | - | chr8.3:58679806-58679825 | MS.gene45773:intron | 40.0% | |
| AGACATGGTTGACTAATCGT+AGG | + | chr8.3:58679343-58679362 | None:intergenic | 40.0% | |
| ATCAAGTGAGCTAAACTCAC+GGG | - | chr8.3:58679877-58679896 | MS.gene45773:intron | 40.0% | |
| ATCAGAATGCAGTGGTACTT+TGG | - | chr8.3:58680208-58680227 | MS.gene45773:intron | 40.0% | |
| ATGAACGCCAATTTCAAAGG+TGG | - | chr8.3:58678757-58678776 | MS.gene45773:intron | 40.0% | |
| CACATACGAATTGTGTAGTC+GGG | + | chr8.3:58680725-58680744 | None:intergenic | 40.0% | |
| CATCCATGGCAATGATAGAA+AGG | - | chr8.3:58680410-58680429 | MS.gene45773:intron | 40.0% | |
| CCTATAAGATTCTCTCTCCA+AGG | + | chr8.3:58678706-58678725 | None:intergenic | 40.0% | |
| CCTTGGAGAGAGAATCTTAT+AGG | - | chr8.3:58678703-58678722 | MS.gene45773:intron | 40.0% | |
| GACATGGTTGACTAATCGTA+GGG | + | chr8.3:58679342-58679361 | None:intergenic | 40.0% | |
| GATGTAATTTCCAGGACATG+GGG | - | chr8.3:58678638-58678657 | MS.gene45773:CDS | 40.0% | |
| GCTTTAACTCAAGCTTTCTC+AGG | - | chr8.3:58678484-58678503 | MS.gene45773:CDS | 40.0% | |
| GTACCTTTCTATCATTGCCA+TGG | + | chr8.3:58680416-58680435 | None:intergenic | 40.0% | |
| GTGAGTGCCTATAGATATGA+AGG | - | chr8.3:58681134-58681153 | MS.gene45773:intron | 40.0% | |
| TATTTCCGTTTGCTTCGAGT+TGG | + | chr8.3:58680602-58680621 | None:intergenic | 40.0% | |
| TGGAATGGTCAAAGAGAGAA+TGG | + | chr8.3:58680368-58680387 | None:intergenic | 40.0% | |
| TTCTGGCAAGAATCTTGAAG+AGG | - | chr8.3:58681322-58681341 | MS.gene45773:intron | 40.0% | |
| TTGCTAACCTTGATTGCTAG+AGG | - | chr8.3:58681855-58681874 | MS.gene45773:CDS | 40.0% | |
| ! | CATAATTTATGCAGGTGTCG+GGG | + | chr8.3:58679847-58679866 | None:intergenic | 40.0% |
| ! | GCAGTCTCTTCAATTTTCTG+AGG | + | chr8.3:58681813-58681832 | None:intergenic | 40.0% |
| AAGAGATGCCCGTTTAGCAA+AGG | - | chr8.3:58680248-58680267 | MS.gene45773:intron | 45.0% | |
| ATTGGGAAAATGGGATCCCT+TGG | - | chr8.3:58678686-58678705 | MS.gene45773:intron | 45.0% | |
| CCAACTGAGCTAAATTCACG+AGG | - | chr8.3:58681419-58681438 | MS.gene45773:intron | 45.0% | |
| CTAACCTTGATTGCTAGAGG+AGG | - | chr8.3:58681858-58681877 | MS.gene45773:CDS | 45.0% | |
| GACTGCTAAAGGGAACTACA+AGG | - | chr8.3:58681827-58681846 | MS.gene45773:intron | 45.0% | |
| GATGTTGCATCTCACATCCA+TGG | - | chr8.3:58680396-58680415 | MS.gene45773:intron | 45.0% | |
| GCTCGAGAAACTCACCTTAA+AGG | - | chr8.3:58679793-58679812 | MS.gene45773:intron | 45.0% | |
| TGCATGCACAAGAACTTCAG+AGG | - | chr8.3:58680317-58680336 | MS.gene45773:intron | 45.0% | |
| TTAGCCTCCTCTAGCAATCA+AGG | + | chr8.3:58681865-58681884 | None:intergenic | 45.0% | |
| TTAGGGCCTCCTTTGCTAAA+CGG | + | chr8.3:58680260-58680279 | None:intergenic | 45.0% | |
| ! | CCTCGTGAATTTAGCTCAGT+TGG | + | chr8.3:58681422-58681441 | None:intergenic | 45.0% |
| !!! | AAAAATTCTATTATTTTTTT+TGG | + | chr8.3:58679426-58679445 | None:intergenic | 5.0% |
| !!! | AAAAATTTATAATAGTTTTA+TGG | - | chr8.3:58679178-58679197 | MS.gene45773:CDS | 5.0% |
| !!! | AAAATTTATAATAGTTTTAT+GGG | - | chr8.3:58679179-58679198 | MS.gene45773:CDS | 5.0% |
| !!! | TAATTTTTTTTTAAAAAAAG+AGG | - | chr8.3:58680576-58680595 | MS.gene45773:intron | 5.0% |
| AAACGGGCATCTCTTTCCCA+AGG | + | chr8.3:58680243-58680262 | None:intergenic | 50.0% | |
| AACGGGCATCTCTTTCCCAA+GGG | + | chr8.3:58680242-58680261 | None:intergenic | 50.0% | |
| AGAGGCCAACTCGAAGCAAA+CGG | - | chr8.3:58680594-58680613 | MS.gene45773:intron | 50.0% | |
| AGATGCCCGTTTAGCAAAGG+AGG | - | chr8.3:58680251-58680270 | MS.gene45773:intron | 50.0% | |
| CAGAGGAACTATTGGGAGCT+AGG | - | chr8.3:58680334-58680353 | MS.gene45773:intron | 50.0% | |
| GCAAAGGAGGCCCTAAAGAA+AGG | - | chr8.3:58680264-58680283 | MS.gene45773:intron | 50.0% | |
| GGAACTATTGGGAGCTAGGA+AGG | - | chr8.3:58680338-58680357 | MS.gene45773:intron | 50.0% | |
| GTAATTTCCAGGACATGGGG+TGG | - | chr8.3:58678641-58678660 | MS.gene45773:CDS | 50.0% | |
| TAGGGCCTCCTTTGCTAAAC+GGG | + | chr8.3:58680259-58680278 | None:intergenic | 50.0% | |
| ! | AGGTGAACAAGTGAGGTGTC+TGG | - | chr8.3:58679813-58679832 | MS.gene45773:intron | 50.0% |
| ! | GGTGAACAAGTGAGGTGTCT+GGG | - | chr8.3:58679814-58679833 | MS.gene45773:intron | 50.0% |
| ! | GTGAACAAGTGAGGTGTCTG+GGG | - | chr8.3:58679815-58679834 | MS.gene45773:intron | 50.0% |
| !! | ACTTTGGAGCATGCACCCTT+GGG | - | chr8.3:58680224-58680243 | MS.gene45773:intron | 50.0% |
| !! | TACTTTGGAGCATGCACCCT+TGG | - | chr8.3:58680223-58680242 | MS.gene45773:intron | 50.0% |
| TTCTCATCCACCCCATGTCC+TGG | + | chr8.3:58678651-58678670 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58678460 | 58681884 | 58678460 | ID=MS.gene45773 |
| chr8.3 | mRNA | 58678460 | 58681884 | 58678460 | ID=MS.gene45773.t1;Parent=MS.gene45773 |
| chr8.3 | exon | 58681839 | 58681884 | 58681839 | ID=MS.gene45773.t1.exon1;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58681839 | 58681884 | 58681839 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| chr8.3 | exon | 58681517 | 58681692 | 58681517 | ID=MS.gene45773.t1.exon2;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58681517 | 58681692 | 58681517 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| chr8.3 | exon | 58679913 | 58680131 | 58679913 | ID=MS.gene45773.t1.exon3;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58679913 | 58680131 | 58679913 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| chr8.3 | exon | 58679001 | 58679225 | 58679001 | ID=MS.gene45773.t1.exon4;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58679001 | 58679225 | 58679001 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| chr8.3 | exon | 58678763 | 58678831 | 58678763 | ID=MS.gene45773.t1.exon5;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58678763 | 58678831 | 58678763 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| chr8.3 | exon | 58678460 | 58678669 | 58678460 | ID=MS.gene45773.t1.exon6;Parent=MS.gene45773.t1 |
| chr8.3 | CDS | 58678460 | 58678669 | 58678460 | ID=cds.MS.gene45773.t1;Parent=MS.gene45773.t1 |
| Gene Sequence |
| Protein sequence |
