Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057707.t1 | KEH30515.1 | 89.4 | 254 | 7 | 1 | 1 | 234 | 1 | 254 | 1.20E-96 | 362.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057707.t1 | Q9C9Z8 | 63.1 | 225 | 83 | 0 | 1 | 225 | 1 | 225 | 4.5e-71 | 269.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057707.t1 | A0A072UXC1 | 89.4 | 254 | 7 | 1 | 1 | 234 | 1 | 254 | 8.9e-97 | 362.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91075 | MS.gene057707 | PPI |
| MS.gene057707 | MS.gene06042 | PPI |
| MS.gene048900 | MS.gene057707 | PPI |
| MS.gene024661 | MS.gene057707 | PPI |
| MS.gene22330 | MS.gene057707 | PPI |
| MS.gene21642 | MS.gene057707 | PPI |
| MS.gene55771 | MS.gene057707 | PPI |
| MS.gene072752 | MS.gene057707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057707.t1 | MTR_4g073800 | 89.370 | 254 | 7 | 1 | 1 | 234 | 1 | 254 | 6.47e-158 | 438 |
| MS.gene057707.t1 | MTR_5g009720 | 71.493 | 221 | 61 | 1 | 1 | 221 | 1 | 219 | 1.18e-111 | 320 |
| MS.gene057707.t1 | MTR_8g099190 | 67.100 | 231 | 64 | 2 | 1 | 221 | 1 | 229 | 3.57e-107 | 309 |
| MS.gene057707.t1 | MTR_8g099190 | 63.786 | 243 | 64 | 3 | 1 | 221 | 1 | 241 | 2.91e-103 | 300 |
| MS.gene057707.t1 | MTR_8g099190 | 61.373 | 233 | 59 | 4 | 1 | 221 | 1 | 214 | 1.04e-92 | 272 |
| MS.gene057707.t1 | MTR_8g099190 | 63.636 | 198 | 60 | 2 | 1 | 188 | 1 | 196 | 3.69e-84 | 250 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057707.t1 | AT3G08560 | 69.333 | 225 | 69 | 0 | 1 | 225 | 1 | 225 | 4.02e-110 | 317 |
| MS.gene057707.t1 | AT4G11150 | 71.364 | 220 | 61 | 1 | 1 | 220 | 1 | 218 | 7.35e-110 | 316 |
| MS.gene057707.t1 | AT1G64200 | 64.407 | 236 | 76 | 2 | 1 | 230 | 1 | 234 | 5.06e-103 | 299 |
| MS.gene057707.t1 | AT1G64200 | 66.079 | 227 | 69 | 2 | 1 | 221 | 1 | 225 | 4.36e-102 | 296 |
| MS.gene057707.t1 | AT1G64200 | 65.054 | 186 | 59 | 1 | 1 | 180 | 1 | 186 | 2.27e-81 | 242 |
Find 39 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCTTTCTCCTCAGCTTCT+TGG | 0.251565 | 4.4:+35823483 | None:intergenic |
| CATGAAAGATGATGCTAAAA+AGG | 0.253988 | 4.4:-35822832 | MS.gene057707:CDS |
| CGATCATCAAGGGCAATCTT+AGG | 0.255958 | 4.4:+35821177 | None:intergenic |
| AATAGAAGGATATACCAAAA+AGG | 0.385736 | 4.4:+35821105 | None:intergenic |
| CATCAAAGAAATAATTGTTC+AGG | 0.393403 | 4.4:-35822766 | MS.gene057707:intron |
| GCTGAATGCATCTCGTATAA+AGG | 0.394063 | 4.4:-35822886 | MS.gene057707:CDS |
| TCGACGAACATCAATCTGTT+TGG | 0.411208 | 4.4:+35823089 | None:intergenic |
| GATCATCAAGGGCAATCTTA+GGG | 0.420043 | 4.4:+35821178 | None:intergenic |
| AGCAAATCCAGCAGATGATT+AGG | 0.425110 | 4.4:-35823514 | MS.gene057707:CDS |
| TTCTATATTGCCACATCTTG+TGG | 0.427568 | 4.4:-35820018 | MS.gene057707:CDS |
| TCACCACCTCATCTTGTGCT+TGG | 0.471251 | 4.4:+35822859 | None:intergenic |
| CTTTCTCCTCAGCTTCTTGG+CGG | 0.494892 | 4.4:+35823486 | None:intergenic |
| TGAAATATCTGTTGCTGCAG+AGG | 0.507699 | 4.4:-35823459 | MS.gene057707:CDS |
| GGATGAACCTAATCATCTGC+TGG | 0.525749 | 4.4:+35823507 | None:intergenic |
| GTAGTATTGGCCTCAGAGGA+TGG | 0.536883 | 4.4:-35820274 | MS.gene057707:CDS |
| GTAAGGTAATGAACATGCCT+CGG | 0.560359 | 4.4:+35820189 | None:intergenic |
| GGAGATAAACACGATCATCA+AGG | 0.564384 | 4.4:+35821166 | None:intergenic |
| TAGTTCTGGAGGAGTAGTAT+TGG | 0.579965 | 4.4:-35820287 | MS.gene057707:CDS |
| TTATTTCAATGTAGTTCTGG+AGG | 0.583060 | 4.4:-35820298 | MS.gene057707:intron |
| GCTTGTTGAGTCGTTGCTAG+AGG | 0.584576 | 4.4:-35821241 | MS.gene057707:CDS |
| TAAGGTAATGAACATGCCTC+GGG | 0.588686 | 4.4:+35820190 | None:intergenic |
| CAGACAAGAGTACGAGCGAA+AGG | 0.590203 | 4.4:-35823112 | MS.gene057707:CDS |
| CTACATCGTAGTAGCACAGA+TGG | 0.593942 | 4.4:+35821279 | None:intergenic |
| AGAGGATGGAAAGATAGTGT+TGG | 0.594931 | 4.4:-35820260 | MS.gene057707:CDS |
| TGATCAAGTTCCACAAGATG+TGG | 0.600195 | 4.4:+35820008 | None:intergenic |
| GTAGCACAGATGGTTCCCTC+AGG | 0.603951 | 4.4:+35821289 | None:intergenic |
| TGTAGGGTTTACTACGCCTG+AGG | 0.609492 | 4.4:-35821305 | MS.gene057707:intron |
| GAGATAAACACGATCATCAA+GGG | 0.613062 | 4.4:+35821167 | None:intergenic |
| ATCATCAAGGGCAATCTTAG+GGG | 0.623318 | 4.4:+35821179 | None:intergenic |
| GTTCATCCGCCAAGAAGCTG+AGG | 0.630671 | 4.4:-35823492 | MS.gene057707:CDS |
| TCATCAAGGGCAATCTTAGG+GGG | 0.635912 | 4.4:+35821180 | None:intergenic |
| GGTACTCCAAGCACAAGATG+AGG | 0.637147 | 4.4:-35822865 | MS.gene057707:CDS |
| TGTGCTACTACGATGTAGAG+AGG | 0.638418 | 4.4:-35821274 | MS.gene057707:CDS |
| AGGAGTAGTATTGGCCTCAG+AGG | 0.646156 | 4.4:-35820278 | MS.gene057707:CDS |
| GTGCTACTACGATGTAGAGA+GGG | 0.653633 | 4.4:-35821273 | MS.gene057707:CDS |
| CACTATCTTTCCATCCTCTG+AGG | 0.654145 | 4.4:+35820264 | None:intergenic |
| GTAGGGTTTACTACGCCTGA+GGG | 0.660356 | 4.4:-35821304 | MS.gene057707:intron |
| TAGCTTAAAGTTGAACAAGA+CGG | 0.663482 | 4.4:-35820052 | MS.gene057707:CDS |
| ACTCCAAGCACAAGATGAGG+TGG | 0.665263 | 4.4:-35822862 | MS.gene057707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAACAATTATACATA+CGG | + | chr4.4:35821493-35821512 | None:intergenic | 10.0% |
| !! | TTTAATAATATGAATATCAA+TGG | - | chr4.4:35820311-35820330 | MS.gene057707:intron | 10.0% |
| !!! | GTTTTCAATAATAAAAAAAA+AGG | - | chr4.4:35823024-35823043 | MS.gene057707:intron | 10.0% |
| !!! | TTAATTTTAATACTTAGTTA+GGG | - | chr4.4:35820909-35820928 | MS.gene057707:intron | 10.0% |
| !!! | TTATAAATAGAAATATTTTC+GGG | - | chr4.4:35821546-35821565 | MS.gene057707:intron | 10.0% |
| !!! | TTTAATTTTAATACTTAGTT+AGG | - | chr4.4:35820908-35820927 | MS.gene057707:intron | 10.0% |
| !!! | TTTTTTTATTATTGAAAACA+AGG | + | chr4.4:35823023-35823042 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTATTGTTGT+TGG | + | chr4.4:35820881-35820900 | None:intergenic | 10.0% |
| !! | AAATAATAATTAGACAAGTT+AGG | - | chr4.4:35820143-35820162 | MS.gene057707:intron | 15.0% |
| !! | AAATTATTGAATAAATTGAG+TGG | - | chr4.4:35821048-35821067 | MS.gene057707:intron | 15.0% |
| !! | AACTAAAAAGTAATTAATGA+TGG | - | chr4.4:35821213-35821232 | MS.gene057707:CDS | 15.0% |
| !! | ACGTTTATTTATATAGTTTA+AGG | - | chr4.4:35822852-35822871 | MS.gene057707:CDS | 15.0% |
| !! | CAATAAAAAAAAAAAAACAC+AGG | - | chr4.4:35820885-35820904 | MS.gene057707:intron | 15.0% |
| !! | CATAATATAAAATGTCATAA+TGG | + | chr4.4:35822913-35822932 | None:intergenic | 15.0% |
| !! | TTTAATCAAAGATAAATAGA+AGG | + | chr4.4:35822459-35822478 | None:intergenic | 15.0% |
| !! | TTTATGAAAATGACAAAATT+TGG | + | chr4.4:35820848-35820867 | None:intergenic | 15.0% |
| !!! | ATTTCTCCTAATTTTTTATA+GGG | - | chr4.4:35820995-35821014 | MS.gene057707:intron | 15.0% |
| !! | AAAAAATTAAGTGTACAAGT+AGG | + | chr4.4:35822033-35822052 | None:intergenic | 20.0% |
| !! | AAAAAGTAATTAATGATGGT+GGG | - | chr4.4:35821217-35821236 | MS.gene057707:CDS | 20.0% |
| !! | AAAAATTAAGTGTACAAGTA+GGG | + | chr4.4:35822032-35822051 | None:intergenic | 20.0% |
| !! | TAAAAAATTAGGAGAAATGA+AGG | + | chr4.4:35820993-35821012 | None:intergenic | 20.0% |
| !! | TAAAAAGTAATTAATGATGG+TGG | - | chr4.4:35821216-35821235 | MS.gene057707:CDS | 20.0% |
| !! | TAATATGAATATCAATGGAT+TGG | - | chr4.4:35820316-35820335 | MS.gene057707:intron | 20.0% |
| !! | TAGAATTTGGGAATTAAATA+TGG | + | chr4.4:35821938-35821957 | None:intergenic | 20.0% |
| !! | TATCATTATGTTCAATTTAG+TGG | - | chr4.4:35822638-35822657 | MS.gene057707:intron | 20.0% |
| !! | TATTGACCCTATAAAAAATT+AGG | + | chr4.4:35821004-35821023 | None:intergenic | 20.0% |
| !! | TATTTATTTCAATGTAGTTC+TGG | - | chr4.4:35823246-35823265 | MS.gene057707:intron | 20.0% |
| !!! | AAACAATTAGAAAGTACAAA+GGG | + | chr4.4:35822492-35822511 | None:intergenic | 20.0% |
| !!! | AGTAAACTTTTACAACAAAT+TGG | + | chr4.4:35822990-35823009 | None:intergenic | 20.0% |
| !!! | ATATAAAATGTCATAATGGA+CGG | + | chr4.4:35822909-35822928 | None:intergenic | 20.0% |
| !!! | ATTATGGTATAACATTTTAG+TGG | + | chr4.4:35821869-35821888 | None:intergenic | 20.0% |
| !!! | CATTTCTCCTAATTTTTTAT+AGG | - | chr4.4:35820994-35821013 | MS.gene057707:intron | 20.0% |
| !!! | TATACTTTAAAGGACTAAAT+TGG | - | chr4.4:35822768-35822787 | MS.gene057707:CDS | 20.0% |
| !!! | TCTCCATTTTGTATAATAAA+TGG | + | chr4.4:35821304-35821323 | None:intergenic | 20.0% |
| ! | AAATCAATGTAATGAGTGTA+AGG | + | chr4.4:35823378-35823397 | None:intergenic | 25.0% |
| ! | AATAGAAGGATATACCAAAA+AGG | + | chr4.4:35822445-35822464 | None:intergenic | 25.0% |
| ! | AATTACTTGAAGCTGAAAAA+AGG | - | chr4.4:35820407-35820426 | MS.gene057707:intron | 25.0% |
| ! | AATTGTTCGATTAAGATGTA+TGG | + | chr4.4:35822593-35822612 | None:intergenic | 25.0% |
| ! | AATTTATTGCATGTGTTTGT+AGG | - | chr4.4:35822225-35822244 | MS.gene057707:intron | 25.0% |
| ! | ATAGACACATAATAGATAGT+GGG | + | chr4.4:35821261-35821280 | None:intergenic | 25.0% |
| ! | ATTTATTGCATGTGTTTGTA+GGG | - | chr4.4:35822226-35822245 | MS.gene057707:intron | 25.0% |
| ! | CATCAAAGAAATAATTGTTC+AGG | - | chr4.4:35820781-35820800 | MS.gene057707:intron | 25.0% |
| ! | GATAAGAATAAAGAGATAGA+GGG | + | chr4.4:35822082-35822101 | None:intergenic | 25.0% |
| ! | GCTCCATTTATTATACAAAA+TGG | - | chr4.4:35821298-35821317 | MS.gene057707:CDS | 25.0% |
| ! | TACCTTAATTGTTAGTGAAA+AGG | - | chr4.4:35823417-35823436 | MS.gene057707:intron | 25.0% |
| ! | TATAGACACAAAAAAAACCT+CGG | - | chr4.4:35821188-35821207 | MS.gene057707:CDS | 25.0% |
| ! | TATCAATTAAAAATCAACGC+TGG | + | chr4.4:35820249-35820268 | None:intergenic | 25.0% |
| ! | TATCTGATTGGTATATGTAA+AGG | + | chr4.4:35821781-35821800 | None:intergenic | 25.0% |
| ! | TCTCTACTATTAAGAAGTAA+GGG | - | chr4.4:35822719-35822738 | MS.gene057707:intron | 25.0% |
| ! | TGATAAGAATAAAGAGATAG+AGG | + | chr4.4:35822083-35822102 | None:intergenic | 25.0% |
| ! | TTAATTGGATACTGTTTGTT+TGG | + | chr4.4:35821989-35822008 | None:intergenic | 25.0% |
| ! | TTATTGAATAAATTGAGTGG+TGG | - | chr4.4:35821051-35821070 | MS.gene057707:intron | 25.0% |
| !! | AAAAGCAATAGAAAGTACAA+AGG | + | chr4.4:35822550-35822569 | None:intergenic | 25.0% |
| !! | AAAGCAATAGAAAGTACAAA+GGG | + | chr4.4:35822549-35822568 | None:intergenic | 25.0% |
| !! | AACCTTTTCACTAACAATTA+AGG | + | chr4.4:35823422-35823441 | None:intergenic | 25.0% |
| !! | CAAACAATTAGAAAGTACAA+AGG | + | chr4.4:35822493-35822512 | None:intergenic | 25.0% |
| !! | CAATTGTTGTGATTCATTTT+AGG | - | chr4.4:35820363-35820382 | MS.gene057707:intron | 25.0% |
| !!! | AATTACTTTTTAGTTTTCCG+AGG | + | chr4.4:35821208-35821227 | None:intergenic | 25.0% |
| !!! | AGTTCAACTCAGTTTTAAAT+TGG | + | chr4.4:35821394-35821413 | None:intergenic | 25.0% |
| !!! | ATATTTTCTAGTAGCATTGA+AGG | + | chr4.4:35823136-35823155 | None:intergenic | 25.0% |
| !!! | ATTCAAATTCTGGTTCTTAT+GGG | - | chr4.4:35820196-35820215 | MS.gene057707:intron | 25.0% |
| !!! | GAAATTGATGGATTTTGTAT+AGG | + | chr4.4:35822697-35822716 | None:intergenic | 25.0% |
| !!! | GGTTTTTGAAAGGTATTTAT+GGG | - | chr4.4:35821343-35821362 | MS.gene057707:intron | 25.0% |
| AATAAATGGAGCATGCAATT+TGG | + | chr4.4:35821290-35821309 | None:intergenic | 30.0% | |
| ACAAATTGGCATGATAAACA+AGG | + | chr4.4:35822976-35822995 | None:intergenic | 30.0% | |
| ACTTGGTAGAAATATCTGAT+TGG | + | chr4.4:35821793-35821812 | None:intergenic | 30.0% | |
| AGTTAGGGTTAAGTAATTTG+TGG | - | chr4.4:35820924-35820943 | MS.gene057707:intron | 30.0% | |
| ATAAAGAGATAGAGGGAAAA+TGG | + | chr4.4:35822075-35822094 | None:intergenic | 30.0% | |
| ATAGTAGAGACTGAAATTGA+TGG | + | chr4.4:35822709-35822728 | None:intergenic | 30.0% | |
| ATCTATGTATACTACATTGG+AGG | + | chr4.4:35821083-35821102 | None:intergenic | 30.0% | |
| ATGTCGATCAAAAGAGATTA+TGG | + | chr4.4:35821885-35821904 | None:intergenic | 30.0% | |
| CAGATCTATGTATACTACAT+TGG | + | chr4.4:35821086-35821105 | None:intergenic | 30.0% | |
| CATGAAAGATGATGCTAAAA+AGG | - | chr4.4:35820715-35820734 | MS.gene057707:intron | 30.0% | |
| GATAAACAAAGTTTCGTCAA+AGG | + | chr4.4:35820615-35820634 | None:intergenic | 30.0% | |
| GATAGACACATAATAGATAG+TGG | + | chr4.4:35821262-35821281 | None:intergenic | 30.0% | |
| GGTGAAATTTACATAGCTTA+GGG | - | chr4.4:35822789-35822808 | MS.gene057707:CDS | 30.0% | |
| GTCTCTACTATTAAGAAGTA+AGG | - | chr4.4:35822718-35822737 | MS.gene057707:intron | 30.0% | |
| GTGAAATTTACATAGCTTAG+GGG | - | chr4.4:35822790-35822809 | MS.gene057707:CDS | 30.0% | |
| TAATTAGACAAGTTAGGTCT+TGG | - | chr4.4:35820149-35820168 | MS.gene057707:intron | 30.0% | |
| TAGCTTAAAGTTGAACAAGA+CGG | - | chr4.4:35823495-35823514 | MS.gene057707:CDS | 30.0% | |
| TGGTGAAATTTACATAGCTT+AGG | - | chr4.4:35822788-35822807 | MS.gene057707:CDS | 30.0% | |
| ! | AGGGAAAATGGAGTATTAAA+AGG | + | chr4.4:35822063-35822082 | None:intergenic | 30.0% |
| ! | CACATGGAATCAACATTTTT+GGG | + | chr4.4:35821573-35821592 | None:intergenic | 30.0% |
| ! | TATATGTAAAGGTGTAAGGT+TGG | + | chr4.4:35821770-35821789 | None:intergenic | 30.0% |
| ! | TGAGTTGAATCCTTATCAAT+CGG | - | chr4.4:35820222-35820241 | MS.gene057707:CDS | 30.0% |
| ! | TTGGTATATGTAAAGGTGTA+AGG | + | chr4.4:35821774-35821793 | None:intergenic | 30.0% |
| !! | CTTTTTAGCATCATCTTTCA+TGG | + | chr4.4:35820717-35820736 | None:intergenic | 30.0% |
| !! | GAAAGGTATTTATGGGTAAT+GGG | - | chr4.4:35821350-35821369 | MS.gene057707:intron | 30.0% |
| !! | GAATTAAATATGGTGCTGTT+GGG | + | chr4.4:35821928-35821947 | None:intergenic | 30.0% |
| !! | GATGGATTTTGTATAGGTTA+AGG | + | chr4.4:35822691-35822710 | None:intergenic | 30.0% |
| !! | GATTCAAATTCTGGTTCTTA+TGG | - | chr4.4:35820195-35820214 | MS.gene057707:intron | 30.0% |
| !! | TGAAAGGTATTTATGGGTAA+TGG | - | chr4.4:35821349-35821368 | MS.gene057707:intron | 30.0% |
| !! | TTATTTCAATGTAGTTCTGG+AGG | - | chr4.4:35823249-35823268 | MS.gene057707:intron | 30.0% |
| !!! | GGGTTTTTGAAAGGTATTTA+TGG | - | chr4.4:35821342-35821361 | MS.gene057707:intron | 30.0% |
| AAAGGAAGGTGATCGTAATA+GGG | + | chr4.4:35821836-35821855 | None:intergenic | 35.0% | |
| AACGAATTACAATGCTCTAG+TGG | + | chr4.4:35821447-35821466 | None:intergenic | 35.0% | |
| ACCTTTCAAAAACCCAACTA+TGG | + | chr4.4:35821337-35821356 | None:intergenic | 35.0% | |
| AGATGATCTTTACCCATAGT+TGG | - | chr4.4:35821321-35821340 | MS.gene057707:intron | 35.0% | |
| ATCTCTCCAAATGGATGAAA+TGG | + | chr4.4:35821169-35821188 | None:intergenic | 35.0% | |
| ATCTTAACTCCCCAACTATT+AGG | + | chr4.4:35821125-35821144 | None:intergenic | 35.0% | |
| CAAAAACCAATCTACCACTA+GGG | + | chr4.4:35822154-35822173 | None:intergenic | 35.0% | |
| CAGCTAGCATTATTAACAAC+TGG | + | chr4.4:35822195-35822214 | None:intergenic | 35.0% | |
| CCTTTCAAAAACCCAACTAT+GGG | + | chr4.4:35821336-35821355 | None:intergenic | 35.0% | |
| CTTGGAATGTCCTAATAGTT+GGG | - | chr4.4:35821112-35821131 | MS.gene057707:intron | 35.0% | |
| GAAATGGAGAGAATACCAAA+TGG | + | chr4.4:35821153-35821172 | None:intergenic | 35.0% | |
| GAGATAAACACGATCATCAA+GGG | + | chr4.4:35822383-35822402 | None:intergenic | 35.0% | |
| GATGATCTTTACCCATAGTT+GGG | - | chr4.4:35821322-35821341 | MS.gene057707:intron | 35.0% | |
| GGATACTGTTTGTTTGGATA+AGG | + | chr4.4:35821983-35822002 | None:intergenic | 35.0% | |
| GTCGAAGGTTCATAGAATTT+GGG | + | chr4.4:35821950-35821969 | None:intergenic | 35.0% | |
| GTTTGTTTGGATAAGGAGAA+TGG | + | chr4.4:35821976-35821995 | None:intergenic | 35.0% | |
| TAATAATGCTAGCTGAGACA+GGG | - | chr4.4:35822200-35822219 | MS.gene057707:intron | 35.0% | |
| TACATAGATCTGTGCATTCT+TGG | - | chr4.4:35821094-35821113 | MS.gene057707:intron | 35.0% | |
| TCAACCAAAAAATGACGATG+TGG | - | chr4.4:35822408-35822427 | MS.gene057707:intron | 35.0% | |
| TCTTGGAATGTCCTAATAGT+TGG | - | chr4.4:35821111-35821130 | MS.gene057707:intron | 35.0% | |
| TGTATAGGTTAAGGACTACT+TGG | + | chr4.4:35822682-35822701 | None:intergenic | 35.0% | |
| TGTGTCTATATCTCTCCAAA+TGG | + | chr4.4:35821178-35821197 | None:intergenic | 35.0% | |
| TTAATAATGCTAGCTGAGAC+AGG | - | chr4.4:35822199-35822218 | MS.gene057707:intron | 35.0% | |
| TTCTATATTGCCACATCTTG+TGG | - | chr4.4:35823529-35823548 | MS.gene057707:CDS | 35.0% | |
| TTCTCTCCATTTCATCCATT+TGG | - | chr4.4:35821160-35821179 | MS.gene057707:CDS | 35.0% | |
| TTGGAATGTCCTAATAGTTG+GGG | - | chr4.4:35821113-35821132 | MS.gene057707:intron | 35.0% | |
| ! | ACACAATTTCGTGGGTTAAT+TGG | + | chr4.4:35822004-35822023 | None:intergenic | 35.0% |
| ! | GCACATGGAATCAACATTTT+TGG | + | chr4.4:35821574-35821593 | None:intergenic | 35.0% |
| ! | TAGAAAGTACAAAGGGTTCA+TGG | + | chr4.4:35822485-35822504 | None:intergenic | 35.0% |
| !! | AACATTTTAGTGGCAAGGTA+TGG | + | chr4.4:35821859-35821878 | None:intergenic | 35.0% |
| !! | CAATTATGTGAAGCTTTGAG+AGG | + | chr4.4:35821644-35821663 | None:intergenic | 35.0% |
| !! | CAGTTGGCTTGAAAACAATT+TGG | + | chr4.4:35821740-35821759 | None:intergenic | 35.0% |
| !! | GGAATTAAATATGGTGCTGT+TGG | + | chr4.4:35821929-35821948 | None:intergenic | 35.0% |
| !! | GGTATAACATTTTAGTGGCA+AGG | + | chr4.4:35821864-35821883 | None:intergenic | 35.0% |
| !!! | ACATCGTCATTTTTTGGTTG+AGG | + | chr4.4:35822409-35822428 | None:intergenic | 35.0% |
| !!! | CTAGTGGTAGATTGGTTTTT+GGG | - | chr4.4:35822153-35822172 | MS.gene057707:intron | 35.0% |
| !!! | GTATCCACATCGTCATTTTT+TGG | + | chr4.4:35822415-35822434 | None:intergenic | 35.0% |
| AATTTACATAGCTTAGGGGC+TGG | - | chr4.4:35822794-35822813 | MS.gene057707:CDS | 40.0% | |
| AGAGGATGGAAAGATAGTGT+TGG | - | chr4.4:35823287-35823306 | MS.gene057707:intron | 40.0% | |
| AGCAAATCCAGCAGATGATT+AGG | - | chr4.4:35820033-35820052 | MS.gene057707:CDS | 40.0% | |
| ATCATCAAGGGCAATCTTAG+GGG | + | chr4.4:35822371-35822390 | None:intergenic | 40.0% | |
| CCAAAAACCAATCTACCACT+AGG | + | chr4.4:35822155-35822174 | None:intergenic | 40.0% | |
| CCACTAGGGAGAAAAAGAAA+AGG | + | chr4.4:35822140-35822159 | None:intergenic | 40.0% | |
| CGGCAACAAGATTCAAATTC+TGG | - | chr4.4:35820186-35820205 | MS.gene057707:intron | 40.0% | |
| GAAAGGAAGGTGATCGTAAT+AGG | + | chr4.4:35821837-35821856 | None:intergenic | 40.0% | |
| GAGTTAAGATCCTCTCCATT+TGG | - | chr4.4:35821135-35821154 | MS.gene057707:CDS | 40.0% | |
| GATCATCAAGGGCAATCTTA+GGG | + | chr4.4:35822372-35822391 | None:intergenic | 40.0% | |
| GCTGAATGCATCTCGTATAA+AGG | - | chr4.4:35820661-35820680 | MS.gene057707:intron | 40.0% | |
| GCTTGAAAACAATTTGGTCC+GGG | + | chr4.4:35821734-35821753 | None:intergenic | 40.0% | |
| GGAGATAAACACGATCATCA+AGG | + | chr4.4:35822384-35822403 | None:intergenic | 40.0% | |
| GGCTTGAAAACAATTTGGTC+CGG | + | chr4.4:35821735-35821754 | None:intergenic | 40.0% | |
| GGTCGAAGGTTCATAGAATT+TGG | + | chr4.4:35821951-35821970 | None:intergenic | 40.0% | |
| GTAAGGTAATGAACATGCCT+CGG | + | chr4.4:35823361-35823380 | None:intergenic | 40.0% | |
| GTTTGGATAAGGAGAATGGA+GGG | + | chr4.4:35821972-35821991 | None:intergenic | 40.0% | |
| TAAGGTAATGAACATGCCTC+GGG | + | chr4.4:35823360-35823379 | None:intergenic | 40.0% | |
| TCGACGAACATCAATCTGTT+TGG | + | chr4.4:35820461-35820480 | None:intergenic | 40.0% | |
| TGAAATATCTGTTGCTGCAG+AGG | - | chr4.4:35820088-35820107 | MS.gene057707:intron | 40.0% | |
| TGTTTGGATAAGGAGAATGG+AGG | + | chr4.4:35821973-35821992 | None:intergenic | 40.0% | |
| TTTAGTGGCAAGGTATGGAA+AGG | + | chr4.4:35821854-35821873 | None:intergenic | 40.0% | |
| ! | AAAGGTGTAAGGTTGGCATT+GGG | + | chr4.4:35821763-35821782 | None:intergenic | 40.0% |
| ! | ATGGACTGTTAGGATCAACT+TGG | + | chr4.4:35821810-35821829 | None:intergenic | 40.0% |
| ! | CCCATAGTTGGGTTTTTGAA+AGG | - | chr4.4:35821333-35821352 | MS.gene057707:intron | 40.0% |
| ! | CCTTTTCTTTTTCTCCCTAG+TGG | - | chr4.4:35822137-35822156 | MS.gene057707:intron | 40.0% |
| ! | TAAAGGTGTAAGGTTGGCAT+TGG | + | chr4.4:35821764-35821783 | None:intergenic | 40.0% |
| ! | TGGATACGCATGAACCTTTT+TGG | - | chr4.4:35822428-35822447 | MS.gene057707:intron | 40.0% |
| ! | TTTTCTCCCTAGTGGTAGAT+TGG | - | chr4.4:35822145-35822164 | MS.gene057707:intron | 40.0% |
| !! | AATAGGGAAGATGGACTGTT+AGG | + | chr4.4:35821820-35821839 | None:intergenic | 40.0% |
| !! | ATATGGTGCTGTTGGGTAAA+TGG | + | chr4.4:35821921-35821940 | None:intergenic | 40.0% |
| !! | TAGTTCTGGAGGAGTAGTAT+TGG | - | chr4.4:35823260-35823279 | MS.gene057707:intron | 40.0% |
| !!! | CCTAGTGGTAGATTGGTTTT+TGG | - | chr4.4:35822152-35822171 | MS.gene057707:intron | 40.0% |
| !!! | CGTCATTTTTTGGTTGAGGT+GGG | + | chr4.4:35822405-35822424 | None:intergenic | 40.0% |
| !!! | TCGTCATTTTTTGGTTGAGG+TGG | + | chr4.4:35822406-35822425 | None:intergenic | 40.0% |
| CACTATCTTTCCATCCTCTG+AGG | + | chr4.4:35823286-35823305 | None:intergenic | 45.0% | |
| CGATCATCAAGGGCAATCTT+AGG | + | chr4.4:35822373-35822392 | None:intergenic | 45.0% | |
| CTACATCGTAGTAGCACAGA+TGG | + | chr4.4:35822271-35822290 | None:intergenic | 45.0% | |
| GGAGAGAATACCAAATGGAG+AGG | + | chr4.4:35821148-35821167 | None:intergenic | 45.0% | |
| GGATGAACCTAATCATCTGC+TGG | + | chr4.4:35820043-35820062 | None:intergenic | 45.0% | |
| GGGCACTTACACAATTTCGT+GGG | + | chr4.4:35822012-35822031 | None:intergenic | 45.0% | |
| GGTGATCGTAATAGGGAAGA+TGG | + | chr4.4:35821829-35821848 | None:intergenic | 45.0% | |
| GGTGGGACTCACTTAATAGT+GGG | - | chr4.4:35821234-35821253 | MS.gene057707:CDS | 45.0% | |
| TAGCTTTCTCCTCAGCTTCT+TGG | + | chr4.4:35820067-35820086 | None:intergenic | 45.0% | |
| TCATCAAGGGCAATCTTAGG+GGG | + | chr4.4:35822370-35822389 | None:intergenic | 45.0% | |
| TGAAAACAATTTGGTCCGGG+TGG | + | chr4.4:35821731-35821750 | None:intergenic | 45.0% | |
| TGACGATCAGACAACGAACA+AGG | + | chr4.4:35820970-35820989 | None:intergenic | 45.0% | |
| TGCTGTTGGGTAAATGGTGT+TGG | + | chr4.4:35821915-35821934 | None:intergenic | 45.0% | |
| TGGCAAGACAGACTACACAT+GGG | + | chr4.4:35821427-35821446 | None:intergenic | 45.0% | |
| TGGTGGGACTCACTTAATAG+TGG | - | chr4.4:35821233-35821252 | MS.gene057707:CDS | 45.0% | |
| ! | AGGGCACTTACACAATTTCG+TGG | + | chr4.4:35822013-35822032 | None:intergenic | 45.0% |
| ! | GTGCTACTACGATGTAGAGA+GGG | - | chr4.4:35822274-35822293 | MS.gene057707:intron | 45.0% |
| ! | TGTGCTACTACGATGTAGAG+AGG | - | chr4.4:35822273-35822292 | MS.gene057707:intron | 45.0% |
| ! | TGTTGGGTAAATGGTGTTGG+AGG | + | chr4.4:35821912-35821931 | None:intergenic | 45.0% |
| ! | TTTTCGACAAAAGTTGCCCG+AGG | - | chr4.4:35823341-35823360 | MS.gene057707:intron | 45.0% |
| !! | ATTTATTTCAATTAAAAATT+AGG | - | chr4.4:35820586-35820605 | MS.gene057707:intron | 5.0% |
| !!! | ATATTTCTATTTATAATATA+AGG | + | chr4.4:35821542-35821561 | None:intergenic | 5.0% |
| !!! | ATTATAAATAGAAATATTTT+CGG | - | chr4.4:35821545-35821564 | MS.gene057707:intron | 5.0% |
| !!! | TTAATTTTAATATACTTTAA+AGG | - | chr4.4:35822758-35822777 | MS.gene057707:intron | 5.0% |
| !!! | TTATATAGTTTTTTTTTTTT+TGG | - | chr4.4:35822826-35822845 | MS.gene057707:CDS | 5.0% |
| !!! | TTTTCAATAATAAAAAAAAA+GGG | - | chr4.4:35823025-35823044 | MS.gene057707:intron | 5.0% |
| AACAATTTGGTCCGGGTGGT+TGG | + | chr4.4:35821727-35821746 | None:intergenic | 50.0% | |
| AACCCATAACCATTGAGGCC+GGG | + | chr4.4:35821602-35821621 | None:intergenic | 50.0% | |
| ACTCCAAGCACAAGATGAGG+TGG | - | chr4.4:35820685-35820704 | MS.gene057707:intron | 50.0% | |
| CAACCCATAACCATTGAGGC+CGG | + | chr4.4:35821603-35821622 | None:intergenic | 50.0% | |
| CAACGCTGGTCCGATTGATA+AGG | + | chr4.4:35820235-35820254 | None:intergenic | 50.0% | |
| CTTTCTCCTCAGCTTCTTGG+CGG | + | chr4.4:35820064-35820083 | None:intergenic | 50.0% | |
| GCGTCAACCCATAACCATTG+AGG | + | chr4.4:35821607-35821626 | None:intergenic | 50.0% | |
| GGTACTCCAAGCACAAGATG+AGG | - | chr4.4:35820682-35820701 | MS.gene057707:intron | 50.0% | |
| GTAGGGTTTACTACGCCTGA+GGG | - | chr4.4:35822243-35822262 | MS.gene057707:intron | 50.0% | |
| GTGGCAAGACAGACTACACA+TGG | + | chr4.4:35821428-35821447 | None:intergenic | 50.0% | |
| GTGGCAAGGTATGGAAAGGA+AGG | + | chr4.4:35821850-35821869 | None:intergenic | 50.0% | |
| TAAGGAGAATGGAGGGTCGA+AGG | + | chr4.4:35821965-35821984 | None:intergenic | 50.0% | |
| TCACCACCTCATCTTGTGCT+TGG | + | chr4.4:35820691-35820710 | None:intergenic | 50.0% | |
| TCTTGGTCAGAGACACGCAT+CGG | - | chr4.4:35820166-35820185 | MS.gene057707:intron | 50.0% | |
| TGATTCCATGTGCCATAGCC+CGG | - | chr4.4:35821581-35821600 | MS.gene057707:intron | 50.0% | |
| TGTAGGGTTTACTACGCCTG+AGG | - | chr4.4:35822242-35822261 | MS.gene057707:intron | 50.0% | |
| ! | CAGACAAGAGTACGAGCGAA+AGG | - | chr4.4:35820435-35820454 | MS.gene057707:intron | 50.0% |
| ! | GCTTGTTGAGTCGTTGCTAG+AGG | - | chr4.4:35822306-35822325 | MS.gene057707:intron | 50.0% |
| ! | TAAGGTTGGCATTGGGCAGT+TGG | + | chr4.4:35821756-35821775 | None:intergenic | 50.0% |
| ! | TACATAGCTTAGGGGCTGGT+TGG | - | chr4.4:35822798-35822817 | MS.gene057707:CDS | 50.0% |
| !! | AGGAGTAGTATTGGCCTCAG+AGG | - | chr4.4:35823269-35823288 | MS.gene057707:intron | 50.0% |
| !! | GTAGTATTGGCCTCAGAGGA+TGG | - | chr4.4:35823273-35823292 | MS.gene057707:intron | 50.0% |
| AGCCCGGCCTCAATGGTTAT+GGG | - | chr4.4:35821597-35821616 | MS.gene057707:intron | 55.0% | |
| GTAGCACAGATGGTTCCCTC+AGG | + | chr4.4:35822261-35822280 | None:intergenic | 55.0% | |
| GTTCATCCGCCAAGAAGCTG+AGG | - | chr4.4:35820055-35820074 | MS.gene057707:CDS | 55.0% | |
| TAACCATTGAGGCCGGGCTA+TGG | + | chr4.4:35821596-35821615 | None:intergenic | 55.0% | |
| TAGCCCGGCCTCAATGGTTA+TGG | - | chr4.4:35821596-35821615 | MS.gene057707:intron | 55.0% | |
| GTGCCATAGCCCGGCCTCAA+TGG | - | chr4.4:35821590-35821609 | MS.gene057707:intron | 65.0% | |
| TCGCTCCATCGCCAACCACC+CGG | - | chr4.4:35821713-35821732 | MS.gene057707:intron | 65.0% | |
| TGAGGCCGGGCTATGGCACA+TGG | + | chr4.4:35821589-35821608 | None:intergenic | 65.0% | |
| TTGGTCCGGGTGGTTGGCGA+TGG | + | chr4.4:35821721-35821740 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 35820011 | 35823558 | 35820011 | ID=MS.gene057707 |
| chr4.4 | mRNA | 35820011 | 35823558 | 35820011 | ID=MS.gene057707.t1;Parent=MS.gene057707 |
| chr4.4 | exon | 35823457 | 35823558 | 35823457 | ID=MS.gene057707.t1.exon1;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35823457 | 35823558 | 35823457 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| chr4.4 | exon | 35823084 | 35823184 | 35823084 | ID=MS.gene057707.t1.exon2;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35823084 | 35823184 | 35823084 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| chr4.4 | exon | 35822767 | 35822923 | 35822767 | ID=MS.gene057707.t1.exon3;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35822767 | 35822923 | 35822767 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| chr4.4 | exon | 35821120 | 35821322 | 35821120 | ID=MS.gene057707.t1.exon4;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35821120 | 35821322 | 35821120 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| chr4.4 | exon | 35820203 | 35820306 | 35820203 | ID=MS.gene057707.t1.exon5;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35820203 | 35820306 | 35820203 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| chr4.4 | exon | 35820011 | 35820090 | 35820011 | ID=MS.gene057707.t1.exon6;Parent=MS.gene057707.t1 |
| chr4.4 | CDS | 35820011 | 35820090 | 35820011 | ID=cds.MS.gene057707.t1;Parent=MS.gene057707.t1 |
| Gene Sequence |
| Protein sequence |
