Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058505.t1 | XP_003616506.2 | 100 | 125 | 0 | 0 | 3 | 127 | 203 | 327 | 1.30E-62 | 248.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058505.t1 | Q54MZ4 | 44.1 | 118 | 64 | 2 | 4 | 121 | 308 | 423 | 2.6e-22 | 106.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058505.t1 | G7K211 | 100.0 | 125 | 0 | 0 | 3 | 127 | 203 | 327 | 9.6e-63 | 248.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058503 | MS.gene058505 | 0.959869 | 6.42E-118 | -1.69E-46 |
| MS.gene058505 | MS.gene06652 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene058505 | MS.gene068592 | 0.812026 | 5.22E-51 | -1.69E-46 |
| MS.gene058505 | MS.gene069129 | 0.80765 | 4.56E-50 | -1.69E-46 |
| MS.gene058505 | MS.gene070897 | 0.804735 | 1.87E-49 | -1.69E-46 |
| MS.gene058505 | MS.gene29000 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene058505 | MS.gene29547 | 0.871791 | 5.22E-67 | -1.69E-46 |
| MS.gene058505 | MS.gene29549 | 0.874706 | 5.48E-68 | -1.69E-46 |
| MS.gene058505 | MS.gene32489 | 0.846471 | 2.13E-59 | -1.69E-46 |
| MS.gene058505 | MS.gene62394 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene058505 | MS.gene78205 | 0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene058505 | MS.gene84401 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene058505 | MS.gene97270 | 0.81149 | 6.82E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058505.t1 | MTR_5g081150 | 100.000 | 125 | 0 | 0 | 3 | 127 | 203 | 327 | 3.56e-87 | 256 |
| MS.gene058505.t1 | MTR_7g064980 | 83.193 | 119 | 20 | 0 | 4 | 122 | 197 | 315 | 3.52e-67 | 205 |
| MS.gene058505.t1 | MTR_7g064980 | 31.933 | 119 | 71 | 2 | 6 | 118 | 98 | 212 | 3.72e-11 | 59.3 |
| MS.gene058505.t1 | MTR_5g081150 | 87.273 | 55 | 7 | 0 | 3 | 57 | 203 | 257 | 5.31e-25 | 95.9 |
| MS.gene058505.t1 | MTR_5g081150 | 100.000 | 46 | 0 | 0 | 3 | 48 | 203 | 248 | 1.59e-24 | 94.4 |
| MS.gene058505.t1 | MTR_5g009500 | 37.405 | 131 | 67 | 3 | 6 | 121 | 208 | 338 | 2.45e-22 | 90.1 |
| MS.gene058505.t1 | MTR_5g009500 | 37.705 | 122 | 63 | 3 | 6 | 118 | 104 | 221 | 2.05e-16 | 73.9 |
| MS.gene058505.t1 | MTR_8g027975 | 33.835 | 133 | 71 | 3 | 6 | 121 | 221 | 353 | 7.85e-21 | 86.3 |
| MS.gene058505.t1 | MTR_8g027975 | 34.167 | 120 | 70 | 3 | 6 | 118 | 117 | 234 | 1.23e-14 | 68.9 |
| MS.gene058505.t1 | MTR_3g098460 | 35.000 | 120 | 70 | 4 | 6 | 121 | 365 | 480 | 3.72e-17 | 76.6 |
| MS.gene058505.t1 | MTR_3g098460 | 33.898 | 118 | 71 | 3 | 4 | 118 | 265 | 378 | 1.17e-11 | 60.8 |
| MS.gene058505.t1 | MTR_1g012030 | 36.752 | 117 | 71 | 3 | 6 | 121 | 296 | 410 | 2.61e-16 | 73.9 |
| MS.gene058505.t1 | MTR_1g012030 | 30.894 | 123 | 77 | 3 | 4 | 124 | 199 | 315 | 5.47e-13 | 64.7 |
| MS.gene058505.t1 | MTR_7g084400 | 34.167 | 120 | 66 | 3 | 6 | 121 | 375 | 485 | 5.15e-16 | 73.2 |
| MS.gene058505.t1 | MTR_7g084400 | 31.667 | 120 | 73 | 3 | 4 | 118 | 273 | 388 | 1.75e-11 | 60.5 |
| MS.gene058505.t1 | MTR_3g104600 | 33.333 | 120 | 72 | 3 | 6 | 121 | 214 | 329 | 1.02e-15 | 72.0 |
| MS.gene058505.t1 | MTR_3g104600 | 30.075 | 133 | 78 | 2 | 6 | 123 | 100 | 232 | 6.68e-12 | 61.2 |
| MS.gene058505.t1 | MTR_3g107510 | 36.134 | 119 | 73 | 3 | 6 | 123 | 279 | 395 | 1.96e-15 | 71.6 |
| MS.gene058505.t1 | MTR_3g107510 | 30.081 | 123 | 78 | 3 | 4 | 124 | 182 | 298 | 5.17e-11 | 58.9 |
| MS.gene058505.t1 | MTR_4g114320 | 34.454 | 119 | 74 | 2 | 6 | 123 | 281 | 396 | 3.04e-15 | 70.9 |
| MS.gene058505.t1 | MTR_4g119770 | 30.657 | 137 | 77 | 5 | 6 | 125 | 194 | 329 | 2.50e-14 | 68.2 |
| MS.gene058505.t1 | MTR_4g119770 | 31.092 | 119 | 74 | 4 | 4 | 118 | 93 | 207 | 6.37e-12 | 61.2 |
| MS.gene058505.t1 | MTR_8g096050 | 30.435 | 115 | 76 | 2 | 6 | 118 | 387 | 499 | 4.34e-14 | 67.8 |
| MS.gene058505.t1 | MTR_8g096050 | 36.975 | 119 | 66 | 5 | 4 | 118 | 287 | 400 | 1.64e-12 | 63.2 |
| MS.gene058505.t1 | MTR_7g109135 | 31.405 | 121 | 72 | 5 | 7 | 121 | 92 | 207 | 1.59e-12 | 62.0 |
| MS.gene058505.t1 | MTR_7g109135 | 31.405 | 121 | 72 | 5 | 7 | 121 | 113 | 228 | 2.62e-12 | 61.6 |
| MS.gene058505.t1 | MTR_5g055410 | 31.148 | 122 | 74 | 4 | 7 | 121 | 187 | 305 | 3.03e-12 | 62.4 |
| MS.gene058505.t1 | MTR_4g119770 | 31.092 | 119 | 74 | 4 | 4 | 118 | 93 | 207 | 3.42e-12 | 61.6 |
| MS.gene058505.t1 | MTR_7g109135 | 31.405 | 121 | 72 | 5 | 7 | 121 | 184 | 299 | 3.66e-12 | 62.0 |
| MS.gene058505.t1 | MTR_7g109135 | 31.405 | 121 | 72 | 5 | 7 | 121 | 191 | 306 | 3.76e-12 | 62.0 |
| MS.gene058505.t1 | MTR_1g087840 | 30.400 | 125 | 76 | 4 | 7 | 125 | 188 | 307 | 6.63e-12 | 61.2 |
| MS.gene058505.t1 | MTR_7g084400 | 31.667 | 120 | 73 | 3 | 4 | 118 | 267 | 382 | 7.39e-12 | 61.2 |
| MS.gene058505.t1 | MTR_6g091800 | 28.448 | 116 | 81 | 1 | 6 | 121 | 217 | 330 | 1.48e-11 | 60.5 |
| MS.gene058505.t1 | MTR_6g091800 | 28.448 | 116 | 81 | 1 | 6 | 121 | 193 | 306 | 1.71e-11 | 60.1 |
| MS.gene058505.t1 | MTR_7g117030 | 33.607 | 122 | 75 | 3 | 6 | 123 | 218 | 337 | 2.16e-11 | 59.7 |
| MS.gene058505.t1 | MTR_2g436930 | 28.261 | 138 | 81 | 5 | 6 | 126 | 103 | 239 | 2.18e-11 | 59.3 |
| MS.gene058505.t1 | MTR_4g005330 | 37.209 | 86 | 51 | 1 | 36 | 121 | 205 | 287 | 2.99e-11 | 59.3 |
| MS.gene058505.t1 | MTR_4g005330 | 37.209 | 86 | 51 | 1 | 36 | 121 | 271 | 353 | 3.11e-11 | 59.3 |
| MS.gene058505.t1 | MTR_2g436930 | 28.261 | 138 | 81 | 5 | 6 | 126 | 193 | 329 | 3.26e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058505.t1 | AT3G55640 | 78.049 | 123 | 27 | 0 | 4 | 126 | 208 | 330 | 1.83e-65 | 201 |
| MS.gene058505.t1 | AT3G55640 | 33.333 | 120 | 69 | 3 | 6 | 118 | 108 | 223 | 1.49e-13 | 65.9 |
| MS.gene058505.t1 | AT3G55640 | 78.049 | 123 | 27 | 0 | 4 | 126 | 208 | 330 | 1.83e-65 | 201 |
| MS.gene058505.t1 | AT3G55640 | 33.333 | 120 | 69 | 3 | 6 | 118 | 108 | 223 | 1.49e-13 | 65.9 |
| MS.gene058505.t1 | AT3G53940 | 75.207 | 121 | 30 | 0 | 4 | 124 | 243 | 363 | 4.45e-65 | 201 |
| MS.gene058505.t1 | AT3G53940 | 35.000 | 120 | 67 | 2 | 6 | 118 | 143 | 258 | 1.12e-14 | 69.3 |
| MS.gene058505.t1 | AT2G37890 | 70.248 | 121 | 36 | 0 | 4 | 124 | 215 | 335 | 5.50e-60 | 187 |
| MS.gene058505.t1 | AT2G37890 | 37.190 | 121 | 65 | 2 | 6 | 119 | 115 | 231 | 1.58e-16 | 74.3 |
| MS.gene058505.t1 | AT4G01100 | 37.037 | 135 | 68 | 3 | 4 | 121 | 160 | 294 | 2.33e-22 | 89.7 |
| MS.gene058505.t1 | AT4G01100 | 35.000 | 120 | 69 | 3 | 6 | 118 | 58 | 175 | 6.79e-14 | 66.6 |
| MS.gene058505.t1 | AT4G01100 | 36.842 | 133 | 67 | 3 | 6 | 121 | 212 | 344 | 3.66e-22 | 89.7 |
| MS.gene058505.t1 | AT4G01100 | 35.000 | 120 | 69 | 3 | 6 | 118 | 108 | 225 | 1.03e-13 | 66.6 |
| MS.gene058505.t1 | AT4G01100 | 37.037 | 135 | 68 | 3 | 4 | 121 | 224 | 358 | 5.73e-22 | 89.4 |
| MS.gene058505.t1 | AT4G01100 | 37.234 | 94 | 57 | 1 | 25 | 118 | 148 | 239 | 2.60e-12 | 62.8 |
| MS.gene058505.t1 | AT3G55640 | 80.000 | 45 | 9 | 0 | 4 | 48 | 208 | 252 | 2.93e-17 | 75.5 |
| MS.gene058505.t1 | AT3G55640 | 33.333 | 120 | 69 | 3 | 6 | 118 | 108 | 223 | 6.73e-14 | 66.2 |
| MS.gene058505.t1 | AT3G55640 | 80.000 | 45 | 9 | 0 | 4 | 48 | 208 | 252 | 2.93e-17 | 75.5 |
| MS.gene058505.t1 | AT3G55640 | 33.333 | 120 | 69 | 3 | 6 | 118 | 108 | 223 | 6.73e-14 | 66.2 |
| MS.gene058505.t1 | AT5G51050 | 37.288 | 118 | 65 | 3 | 6 | 121 | 385 | 495 | 3.06e-17 | 76.6 |
| MS.gene058505.t1 | AT5G51050 | 32.203 | 118 | 75 | 2 | 4 | 118 | 283 | 398 | 2.01e-11 | 60.1 |
| MS.gene058505.t1 | AT4G32400 | 37.190 | 121 | 73 | 2 | 4 | 123 | 269 | 387 | 3.36e-17 | 76.3 |
| MS.gene058505.t1 | AT5G61810 | 30.833 | 120 | 73 | 2 | 6 | 122 | 364 | 476 | 1.97e-16 | 74.3 |
| MS.gene058505.t1 | AT5G61810 | 36.522 | 115 | 68 | 2 | 4 | 118 | 268 | 377 | 1.95e-12 | 63.2 |
| MS.gene058505.t1 | AT1G14560 | 34.454 | 119 | 68 | 3 | 6 | 118 | 105 | 219 | 5.39e-16 | 71.6 |
| MS.gene058505.t1 | AT5G61810 | 30.833 | 120 | 73 | 2 | 6 | 122 | 221 | 333 | 6.37e-16 | 72.4 |
| MS.gene058505.t1 | AT5G61810 | 34.783 | 115 | 70 | 2 | 4 | 118 | 125 | 234 | 2.08e-12 | 62.8 |
| MS.gene058505.t1 | AT1G14560 | 34.454 | 119 | 68 | 3 | 6 | 118 | 203 | 317 | 1.24e-15 | 71.6 |
| MS.gene058505.t1 | AT5G07320 | 31.933 | 119 | 72 | 2 | 6 | 122 | 366 | 477 | 2.03e-15 | 71.6 |
| MS.gene058505.t1 | AT5G07320 | 35.345 | 116 | 69 | 3 | 4 | 118 | 269 | 379 | 8.01e-13 | 64.3 |
| MS.gene058505.t1 | AT3G53940 | 35.000 | 120 | 67 | 2 | 6 | 118 | 143 | 258 | 6.49e-15 | 69.3 |
| MS.gene058505.t1 | AT3G53940 | 64.444 | 45 | 16 | 0 | 4 | 48 | 243 | 287 | 1.57e-14 | 68.6 |
| MS.gene058505.t1 | AT4G26180 | 33.333 | 123 | 67 | 3 | 6 | 121 | 195 | 309 | 1.89e-14 | 68.6 |
| MS.gene058505.t1 | AT4G26180 | 30.645 | 124 | 74 | 3 | 6 | 118 | 86 | 208 | 5.38e-11 | 58.9 |
| MS.gene058505.t1 | AT4G11440 | 33.607 | 122 | 74 | 2 | 6 | 122 | 485 | 604 | 8.15e-14 | 67.0 |
| MS.gene058505.t1 | AT4G11440 | 33.607 | 122 | 74 | 2 | 6 | 122 | 485 | 604 | 8.15e-14 | 67.0 |
| MS.gene058505.t1 | AT5G48970 | 33.613 | 119 | 71 | 4 | 4 | 118 | 28 | 142 | 3.47e-13 | 64.3 |
| MS.gene058505.t1 | AT5G48970 | 33.613 | 119 | 71 | 4 | 4 | 118 | 99 | 213 | 4.53e-13 | 64.7 |
| MS.gene058505.t1 | AT4G27940 | 32.500 | 120 | 75 | 2 | 6 | 121 | 290 | 407 | 2.72e-12 | 62.8 |
| MS.gene058505.t1 | AT1G25380 | 32.203 | 118 | 69 | 3 | 7 | 117 | 189 | 302 | 3.75e-12 | 62.0 |
| MS.gene058505.t1 | AT1G25380 | 32.203 | 118 | 69 | 3 | 7 | 117 | 189 | 302 | 3.75e-12 | 62.0 |
| MS.gene058505.t1 | AT1G14140 | 37.500 | 80 | 50 | 0 | 39 | 118 | 19 | 98 | 4.01e-11 | 58.9 |
| MS.gene058505.t1 | AT4G26180 | 30.645 | 124 | 74 | 3 | 6 | 118 | 86 | 208 | 4.10e-11 | 58.9 |
| MS.gene058505.t1 | AT3G21390 | 37.647 | 85 | 46 | 2 | 38 | 115 | 262 | 346 | 6.73e-11 | 58.5 |
| MS.gene058505.t1 | AT3G21390 | 37.647 | 85 | 46 | 2 | 38 | 115 | 240 | 324 | 8.35e-11 | 58.2 |
Find 35 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCTTGTGGCAGTCTTTC+AGG | 0.123605 | 5.3:+65582789 | MS.gene058505:CDS |
| GAGAAGCTGATTGCTATATT+TGG | 0.270991 | 5.3:-65582590 | None:intergenic |
| ATGAAAGCTTGAGATCGTTT+TGG | 0.339773 | 5.3:+65582618 | MS.gene058505:CDS |
| CGATCTCAAGCTTTCATATA+CGG | 0.347975 | 5.3:-65582612 | None:intergenic |
| TTCAACTGTTGTTGTTAGTC+TGG | 0.353204 | 5.3:+65582770 | MS.gene058505:CDS |
| GGCACAACCTTATAGTATTC+AGG | 0.364759 | 5.3:-65584426 | None:intergenic |
| TCAGGCATTGCATCATCAAC+AGG | 0.416081 | 5.3:+65582807 | MS.gene058505:CDS |
| GTACATTCAAGCATATATTC+CGG | 0.468396 | 5.3:+65584367 | MS.gene058505:CDS |
| TGGTGCTAATGCAGACTGTT+GGG | 0.472674 | 5.3:+65582567 | None:intergenic |
| ATATGCAGCAACGTTTCCAT+TGG | 0.474353 | 5.3:+65584272 | MS.gene058505:intron |
| GTGTACAATACAGGTCTCTT+TGG | 0.475434 | 5.3:+65584345 | MS.gene058505:CDS |
| CAGGTAAAATTCCTCTGTAA+AGG | 0.481174 | 5.3:-65584407 | None:intergenic |
| CTGGTGCTAATGCAGACTGT+TGG | 0.488868 | 5.3:+65582566 | None:intergenic |
| CGAGCCCGTGTGTACAATAC+AGG | 0.501443 | 5.3:+65584336 | MS.gene058505:CDS |
| AACCATCTTCAGTGTCTCAT+AGG | 0.501803 | 5.3:-65584472 | None:intergenic |
| GACCTATGAGACACTGAAGA+TGG | 0.501950 | 5.3:+65584470 | MS.gene058505:CDS |
| TATAAGGTTGTGCCTGGTGT+AGG | 0.529307 | 5.3:+65584435 | MS.gene058505:CDS |
| CTCCGTCTAACAAGATCCAA+TGG | 0.539106 | 5.3:-65584288 | None:intergenic |
| AACAACAACAGTTGAATCAT+CGG | 0.558241 | 5.3:-65582763 | None:intergenic |
| AAGCATATATTCCGGTCAGA+AGG | 0.563525 | 5.3:+65584375 | MS.gene058505:CDS |
| TTCCATTGGATCTTGTTAGA+CGG | 0.564464 | 5.3:+65584286 | MS.gene058505:CDS |
| AGTTGATGGGTGTAATCATA+CGG | 0.572720 | 5.3:-65584511 | None:intergenic |
| AGACGGAGGAAGCAACTTGA+GGG | 0.579075 | 5.3:+65584303 | MS.gene058505:CDS |
| GGCCACGCAAACCTTCTGAC+CGG | 0.592865 | 5.3:-65584386 | None:intergenic |
| TAGACGGAGGAAGCAACTTG+AGG | 0.593462 | 5.3:+65584302 | MS.gene058505:CDS |
| GAATACTATAAGGTTGTGCC+TGG | 0.602847 | 5.3:+65584429 | MS.gene058505:CDS |
| TTCCGGTCAGAAGGTTTGCG+TGG | 0.617988 | 5.3:+65584384 | MS.gene058505:CDS |
| CATTGGATCTTGTTAGACGG+AGG | 0.625988 | 5.3:+65584289 | MS.gene058505:CDS |
| AGAGACCTGTATTGTACACA+CGG | 0.636276 | 5.3:-65584341 | None:intergenic |
| GGTTTGCGTGGCCTTTACAG+AGG | 0.639547 | 5.3:+65584396 | MS.gene058505:CDS |
| GTTGTTGTTAGTCTGGCTTG+TGG | 0.646435 | 5.3:+65582777 | MS.gene058505:CDS |
| ACGGAGGAAGCAACTTGAGG+GGG | 0.659118 | 5.3:+65584305 | MS.gene058505:CDS |
| GACGGAGGAAGCAACTTGAG+GGG | 0.659793 | 5.3:+65584304 | MS.gene058505:CDS |
| ATAAAACAAATGCCTACACC+AGG | 0.667613 | 5.3:-65584447 | None:intergenic |
| GAGACCTGTATTGTACACAC+GGG | 0.686846 | 5.3:-65584340 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATATTATCAATATCAAT+TGG | + | chr5.3:65583709-65583728 | MS.gene058505:intron | 15.0% |
| !!! | CAATTGATATTGATAATATA+TGG | - | chr5.3:65583711-65583730 | None:intergenic | 15.0% |
| !!! | TTCTTCAATTTTTATTTAAC+TGG | - | chr5.3:65583063-65583082 | None:intergenic | 15.0% |
| !! | AAATTCAATAGTTTGACTAA+AGG | - | chr5.3:65583087-65583106 | None:intergenic | 20.0% |
| !! | ACATGTCATAAAATAAAACT+TGG | - | chr5.3:65583344-65583363 | None:intergenic | 20.0% |
| !! | ATAAATGAAATTGTCAACAT+AGG | + | chr5.3:65583649-65583668 | MS.gene058505:intron | 20.0% |
| !! | CATGTCATAAAATAAAACTT+GGG | - | chr5.3:65583343-65583362 | None:intergenic | 20.0% |
| !! | TAATAAATTTCCTGAAAAAC+AGG | - | chr5.3:65583288-65583307 | None:intergenic | 20.0% |
| !! | TATTATCAATATCAATTGGA+TGG | + | chr5.3:65583713-65583732 | MS.gene058505:intron | 20.0% |
| !! | TTCAAATATGATTAGATTTC+TGG | + | chr5.3:65584111-65584130 | MS.gene058505:intron | 20.0% |
| !!! | AACATAATTTGTTATTGAAG+TGG | - | chr5.3:65584070-65584089 | None:intergenic | 20.0% |
| !!! | AATTTTACCTGAATACTATA+AGG | + | chr5.3:65584419-65584438 | MS.gene058505:CDS | 20.0% |
| !!! | TATAACATTACTTGATTTGA+TGG | + | chr5.3:65584164-65584183 | MS.gene058505:intron | 20.0% |
| ! | AAAACATACTATTGCTGTAT+TGG | - | chr5.3:65583799-65583818 | None:intergenic | 25.0% |
| ! | AAAGAAGTTAATATCTGTAG+TGG | + | chr5.3:65583125-65583144 | MS.gene058505:intron | 25.0% |
| ! | AAATTATCAGGAATACGTAT+AGG | - | chr5.3:65582924-65582943 | None:intergenic | 25.0% |
| ! | ACATCAAAAGGTAAATTATC+AGG | - | chr5.3:65582936-65582955 | None:intergenic | 25.0% |
| ! | GCCATTTGAAAATTTAGTAA+GGG | + | chr5.3:65583240-65583259 | MS.gene058505:intron | 25.0% |
| ! | TATGAATATACGTGAATTAG+AGG | - | chr5.3:65582702-65582721 | None:intergenic | 25.0% |
| ! | TGACAATTTCATTTATCCAT+TGG | - | chr5.3:65583645-65583664 | None:intergenic | 25.0% |
| !! | AATCACAATTTTCTTCGTTT+AGG | - | chr5.3:65583590-65583609 | None:intergenic | 25.0% |
| !! | ATATGGTTTTCTTTCTTTGA+AGG | - | chr5.3:65583694-65583713 | None:intergenic | 25.0% |
| !! | TCCCTTACTAAATTTTCAAA+TGG | - | chr5.3:65583244-65583263 | None:intergenic | 25.0% |
| !! | TGCCATTTGAAAATTTAGTA+AGG | + | chr5.3:65583239-65583258 | MS.gene058505:intron | 25.0% |
| !! | TTTTGATGTTTCTTGCAATT+GGG | + | chr5.3:65582947-65582966 | MS.gene058505:intron | 25.0% |
| !!! | TATGATTAGATTTCTGGTTT+TGG | + | chr5.3:65584117-65584136 | MS.gene058505:intron | 25.0% |
| AACAACAACAGTTGAATCAT+CGG | - | chr5.3:65582766-65582785 | None:intergenic | 30.0% | |
| ATAAAATAACAACTCCATCC+CGG | - | chr5.3:65583218-65583237 | None:intergenic | 30.0% | |
| ATGGTGCATTTCACATAAAA+AGG | + | chr5.3:65584183-65584202 | MS.gene058505:intron | 30.0% | |
| ATTTCACATAAAAAGGGATC+AGG | + | chr5.3:65584190-65584209 | MS.gene058505:intron | 30.0% | |
| CAATTGCAAGAAACATCAAA+AGG | - | chr5.3:65582948-65582967 | None:intergenic | 30.0% | |
| GTACATTCAAGCATATATTC+CGG | + | chr5.3:65584367-65584386 | MS.gene058505:CDS | 30.0% | |
| TATCAATATCAATTGGATGG+TGG | + | chr5.3:65583716-65583735 | MS.gene058505:intron | 30.0% | |
| TGGTGCATTTCACATAAAAA+GGG | + | chr5.3:65584184-65584203 | MS.gene058505:intron | 30.0% | |
| TTCTATTGACACTAACTACT+TGG | + | chr5.3:65583756-65583775 | MS.gene058505:intron | 30.0% | |
| TTTGATGTTTCTTGCAATTG+GGG | + | chr5.3:65582948-65582967 | MS.gene058505:intron | 30.0% | |
| ! | CTTTTGATGTTTCTTGCAAT+TGG | + | chr5.3:65582946-65582965 | MS.gene058505:intron | 30.0% |
| ! | TCAACAGGTTAGTTATCAAA+AGG | + | chr5.3:65582822-65582841 | MS.gene058505:intron | 30.0% |
| ! | TCTTGATTGTTGAACTTTTG+AGG | + | chr5.3:65582890-65582909 | MS.gene058505:intron | 30.0% |
| ! | TTGGGGTTTGTATATTCTTT+TGG | + | chr5.3:65582965-65582984 | MS.gene058505:intron | 30.0% |
| !!! | TTTTGGAATTAGTTCTCACT+GGG | + | chr5.3:65584134-65584153 | MS.gene058505:intron | 30.0% |
| ATAAAACAAATGCCTACACC+AGG | - | chr5.3:65584450-65584469 | None:intergenic | 35.0% | |
| ATGAACCTATATCATTCCCT+CGG | + | chr5.3:65583411-65583430 | MS.gene058505:intron | 35.0% | |
| CAAGAAATGACCTTATGTGA+CGG | - | chr5.3:65583390-65583409 | None:intergenic | 35.0% | |
| CACTGGACAATTACATTTAC+AGG | - | chr5.3:65584017-65584036 | None:intergenic | 35.0% | |
| CAGGTAAAATTCCTCTGTAA+AGG | - | chr5.3:65584410-65584429 | None:intergenic | 35.0% | |
| CGATCTCAAGCTTTCATATA+CGG | - | chr5.3:65582615-65582634 | None:intergenic | 35.0% | |
| GAGAAGCTGATTGCTATATT+TGG | - | chr5.3:65582593-65582612 | None:intergenic | 35.0% | |
| GTCCATTTGACAACAAATTG+CGG | + | chr5.3:65583941-65583960 | MS.gene058505:intron | 35.0% | |
| GTGAATTAGAGGAAAATCAG+TGG | - | chr5.3:65582691-65582710 | None:intergenic | 35.0% | |
| GTTGTCAAATGGACAAGATA+TGG | - | chr5.3:65583935-65583954 | None:intergenic | 35.0% | |
| TAAATGTAATTGTCCAGTGC+AGG | + | chr5.3:65584018-65584037 | MS.gene058505:intron | 35.0% | |
| TAACAGATGAATTCAACCGT+AGG | - | chr5.3:65584245-65584264 | None:intergenic | 35.0% | |
| TTCCATTGGATCTTGTTAGA+CGG | + | chr5.3:65584286-65584305 | MS.gene058505:CDS | 35.0% | |
| TTGCTCATGATAAAAGCCAA+TGG | + | chr5.3:65583626-65583645 | MS.gene058505:intron | 35.0% | |
| ! | ATGAAAGCTTGAGATCGTTT+TGG | + | chr5.3:65582618-65582637 | MS.gene058505:CDS | 35.0% |
| ! | TACTTGTTCACATGTTTCTG+AGG | + | chr5.3:65583524-65583543 | MS.gene058505:intron | 35.0% |
| ! | TTACCTTTTTCCTACATCTC+TGG | + | chr5.3:65582991-65583010 | MS.gene058505:intron | 35.0% |
| ! | TTCAACTGTTGTTGTTAGTC+TGG | + | chr5.3:65582770-65582789 | MS.gene058505:CDS | 35.0% |
| ! | TTTGGAATTAGTTCTCACTG+GGG | + | chr5.3:65584135-65584154 | MS.gene058505:intron | 35.0% |
| !! | TCACACTTTTCCTGTTTTTC+AGG | + | chr5.3:65583275-65583294 | MS.gene058505:intron | 35.0% |
| !!! | GTTTTGGAATTAGTTCTCAC+TGG | + | chr5.3:65584133-65584152 | MS.gene058505:intron | 35.0% |
| AACAGTTGAATCATCGGATC+TGG | - | chr5.3:65582760-65582779 | None:intergenic | 40.0% | |
| AACCATCTTCAGTGTCTCAT+AGG | - | chr5.3:65584475-65584494 | None:intergenic | 40.0% | |
| AAGCATATATTCCGGTCAGA+AGG | + | chr5.3:65584375-65584394 | MS.gene058505:CDS | 40.0% | |
| ACATACAGTTGTTGTAGCAG+TGG | - | chr5.3:65583826-65583845 | None:intergenic | 40.0% | |
| AGAGACCTGTATTGTACACA+CGG | - | chr5.3:65584344-65584363 | None:intergenic | 40.0% | |
| ATATGCAGCAACGTTTCCAT+TGG | + | chr5.3:65584272-65584291 | MS.gene058505:intron | 40.0% | |
| ATGCCAGAGATGTAGGAAAA+AGG | - | chr5.3:65582997-65583016 | None:intergenic | 40.0% | |
| CGTCACATAAGGTCATTTCT+TGG | + | chr5.3:65583388-65583407 | MS.gene058505:intron | 40.0% | |
| CTTGTAGACTAGAATGCCTA+CGG | + | chr5.3:65584226-65584245 | MS.gene058505:intron | 40.0% | |
| GAATACTATAAGGTTGTGCC+TGG | + | chr5.3:65584429-65584448 | MS.gene058505:CDS | 40.0% | |
| GCTACAACAACTGTATGTTC+AGG | + | chr5.3:65583828-65583847 | MS.gene058505:intron | 40.0% | |
| GGCACAACCTTATAGTATTC+AGG | - | chr5.3:65584429-65584448 | None:intergenic | 40.0% | |
| GTGTACAATACAGGTCTCTT+TGG | + | chr5.3:65584345-65584364 | MS.gene058505:CDS | 40.0% | |
| TAAGAAAGACAGCACTACAC+AGG | - | chr5.3:65583987-65584006 | None:intergenic | 40.0% | |
| TGTGTAGTGCTGTCTTTCTT+AGG | + | chr5.3:65583986-65584005 | MS.gene058505:intron | 40.0% | |
| !! | CTCCGCAATTTGTTGTCAAA+TGG | - | chr5.3:65583946-65583965 | None:intergenic | 40.0% |
| !! | GATCGTTTTGGATGTCAAAC+AGG | + | chr5.3:65582630-65582649 | MS.gene058505:CDS | 40.0% |
| !!! | GACACTGAAGATGGTTTTAG+CGG | + | chr5.3:65584479-65584498 | MS.gene058505:CDS | 40.0% |
| AAGAGGACACCTCTCACATT+TGG | - | chr5.3:65583440-65583459 | None:intergenic | 45.0% | |
| ACACTTGATGCCAGAGATGT+AGG | - | chr5.3:65583004-65583023 | None:intergenic | 45.0% | |
| ACATCAGGTGAAGGTAACCT+AGG | - | chr5.3:65583479-65583498 | None:intergenic | 45.0% | |
| ACCTTCACCTGATGTTTGGA+CGG | + | chr5.3:65583484-65583503 | MS.gene058505:intron | 45.0% | |
| ACGGAATCAGCTGCATAACT+TGG | - | chr5.3:65583371-65583390 | None:intergenic | 45.0% | |
| CAACAACTGTATGTTCAGGC+AGG | + | chr5.3:65583832-65583851 | MS.gene058505:intron | 45.0% | |
| CATTGGATCTTGTTAGACGG+AGG | + | chr5.3:65584289-65584308 | MS.gene058505:CDS | 45.0% | |
| CGGAATCAGCTGCATAACTT+GGG | - | chr5.3:65583370-65583389 | None:intergenic | 45.0% | |
| CTCCGTCTAACAAGATCCAA+TGG | - | chr5.3:65584291-65584310 | None:intergenic | 45.0% | |
| CTGATATCCGTCCAAACATC+AGG | - | chr5.3:65583494-65583513 | None:intergenic | 45.0% | |
| GACCTATGAGACACTGAAGA+TGG | + | chr5.3:65584470-65584489 | MS.gene058505:CDS | 45.0% | |
| GAGACCTGTATTGTACACAC+GGG | - | chr5.3:65584343-65584362 | None:intergenic | 45.0% | |
| GGAATCAGCTGCATAACTTG+GGG | - | chr5.3:65583369-65583388 | None:intergenic | 45.0% | |
| GGTAACCGAGGGAATGATAT+AGG | - | chr5.3:65583419-65583438 | None:intergenic | 45.0% | |
| GGTTACCTTCACCTGATGTT+TGG | + | chr5.3:65583480-65583499 | MS.gene058505:intron | 45.0% | |
| TATAAGGTTGTGCCTGGTGT+AGG | + | chr5.3:65584435-65584454 | MS.gene058505:CDS | 45.0% | |
| TTGAGGTATGCTTCTCACCT+AGG | + | chr5.3:65583459-65583478 | MS.gene058505:intron | 45.0% | |
| ! | CTCTCACATTTGGTAACCGA+GGG | - | chr5.3:65583430-65583449 | None:intergenic | 45.0% |
| ! | GTGAGAAGCATACCTCAAAG+AGG | - | chr5.3:65583457-65583476 | None:intergenic | 45.0% |
| ! | GTTGTTGTTAGTCTGGCTTG+TGG | + | chr5.3:65582777-65582796 | MS.gene058505:CDS | 45.0% |
| ! | TCAGGCATTGCATCATCAAC+AGG | + | chr5.3:65582807-65582826 | MS.gene058505:CDS | 45.0% |
| ACAAAGTTGCAAGCCTGCAC+TGG | - | chr5.3:65584034-65584053 | None:intergenic | 50.0% | |
| ACAAATTGCGGAGAGTCTCG+TGG | + | chr5.3:65583953-65583972 | MS.gene058505:intron | 50.0% | |
| AGACGGAGGAAGCAACTTGA+GGG | + | chr5.3:65584303-65584322 | MS.gene058505:CDS | 50.0% | |
| CCTCGGTTACCAAATGTGAG+AGG | + | chr5.3:65583428-65583447 | MS.gene058505:intron | 50.0% | |
| TAGACGGAGGAAGCAACTTG+AGG | + | chr5.3:65584302-65584321 | MS.gene058505:CDS | 50.0% | |
| TCCGTCCAAACATCAGGTGA+AGG | - | chr5.3:65583488-65583507 | None:intergenic | 50.0% | |
| TGTATGTTCAGGCAGGCTTG+TGG | + | chr5.3:65583839-65583858 | MS.gene058505:intron | 50.0% | |
| ! | CCTCTCACATTTGGTAACCG+AGG | - | chr5.3:65583431-65583450 | None:intergenic | 50.0% |
| ! | GCAGCTGATTCCGTCACATA+AGG | + | chr5.3:65583377-65583396 | MS.gene058505:intron | 50.0% |
| !! | TGTGAGAGGTGTCCTCTTTG+AGG | + | chr5.3:65583442-65583461 | MS.gene058505:intron | 50.0% |
| AACAACTCCATCCCGGTCTC+TGG | - | chr5.3:65583211-65583230 | None:intergenic | 55.0% | |
| ACGGAGGAAGCAACTTGAGG+GGG | + | chr5.3:65584305-65584324 | MS.gene058505:CDS | 55.0% | |
| CGAGCCCGTGTGTACAATAC+AGG | + | chr5.3:65584336-65584355 | MS.gene058505:CDS | 55.0% | |
| GACGGAGGAAGCAACTTGAG+GGG | + | chr5.3:65584304-65584323 | MS.gene058505:CDS | 55.0% | |
| GGTTTGCGTGGCCTTTACAG+AGG | + | chr5.3:65584396-65584415 | MS.gene058505:CDS | 55.0% | |
| TGACCCCTAGAACCAGAGAC+CGG | + | chr5.3:65583196-65583215 | MS.gene058505:intron | 55.0% | |
| TTCCGGTCAGAAGGTTTGCG+TGG | + | chr5.3:65584384-65584403 | MS.gene058505:CDS | 55.0% | |
| ! | CTGGCTTGTGGCAGTCTTTC+AGG | + | chr5.3:65582789-65582808 | MS.gene058505:CDS | 55.0% |
| !! | ATCCCGGTCTCTGGTTCTAG+GGG | - | chr5.3:65583202-65583221 | None:intergenic | 55.0% |
| !! | CATCCCGGTCTCTGGTTCTA+GGG | - | chr5.3:65583203-65583222 | None:intergenic | 55.0% |
| !! | TCTGGTTCTAGGGGTCAGTC+TGG | - | chr5.3:65583193-65583212 | None:intergenic | 55.0% |
| AAGCAACTTGAGGGGGCTGG+TGG | + | chr5.3:65584312-65584331 | MS.gene058505:CDS | 60.0% | |
| AGGAAGCAACTTGAGGGGGC+TGG | + | chr5.3:65584309-65584328 | MS.gene058505:CDS | 60.0% | |
| CCTAGAACCAGAGACCGGGA+TGG | + | chr5.3:65583201-65583220 | MS.gene058505:intron | 60.0% | |
| GACCCCTAGAACCAGAGACC+GGG | + | chr5.3:65583197-65583216 | MS.gene058505:intron | 60.0% | |
| GGCCACGCAAACCTTCTGAC+CGG | - | chr5.3:65584389-65584408 | None:intergenic | 60.0% | |
| ! | AGCAACTTGAGGGGGCTGGT+GGG | + | chr5.3:65584313-65584332 | MS.gene058505:CDS | 60.0% |
| !! | CCATCCCGGTCTCTGGTTCT+AGG | - | chr5.3:65583204-65583223 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65582575 | 65584518 | 65582575 | ID=MS.gene058505 |
| chr5.3 | mRNA | 65582575 | 65584518 | 65582575 | ID=MS.gene058505.t1;Parent=MS.gene058505 |
| chr5.3 | exon | 65582575 | 65582651 | 65582575 | ID=MS.gene058505.t1.exon1;Parent=MS.gene058505.t1 |
| chr5.3 | CDS | 65582575 | 65582651 | 65582575 | ID=cds.MS.gene058505.t1;Parent=MS.gene058505.t1 |
| chr5.3 | exon | 65582761 | 65582828 | 65582761 | ID=MS.gene058505.t1.exon2;Parent=MS.gene058505.t1 |
| chr5.3 | CDS | 65582761 | 65582828 | 65582761 | ID=cds.MS.gene058505.t1;Parent=MS.gene058505.t1 |
| chr5.3 | exon | 65584280 | 65584518 | 65584280 | ID=MS.gene058505.t1.exon3;Parent=MS.gene058505.t1 |
| chr5.3 | CDS | 65584280 | 65584518 | 65584280 | ID=cds.MS.gene058505.t1;Parent=MS.gene058505.t1 |
| Gene Sequence |
| Protein sequence |
