Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62394.t1 | KEH16080.1 | 88.2 | 321 | 34 | 1 | 1 | 321 | 1 | 317 | 1.10E-78 | 303.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62394.t1 | Q9XI36 | 63.8 | 69 | 24 | 1 | 1 | 68 | 22 | 90 | 1.1e-18 | 95.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62394.t1 | G7JE44 | 88.2 | 321 | 34 | 1 | 1 | 321 | 38 | 354 | 8.3e-79 | 303.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene62394 | 0.820177 | 7.87E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene62394 | 0.817617 | 3.01E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene62394 | 0.813752 | 2.18E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene62394 | 0.801448 | 8.96E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene62394 | 0.822479 | 2.32E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene62394 | 0.811792 | 5.86E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene62394 | 0.803009 | 4.28E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene62394 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene62394 | 0.801828 | 7.49E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene62394 | -0.868587 | 5.84E-66 | -1.69E-46 |
| MS.gene050629 | MS.gene62394 | -0.819798 | 9.61E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene62394 | 0.804462 | 2.14E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene62394 | 0.800306 | 1.53E-48 | -1.69E-46 |
| MS.gene050762 | MS.gene62394 | 0.847981 | 8.20E-60 | -1.69E-46 |
| MS.gene050763 | MS.gene62394 | 0.850893 | 1.26E-60 | -1.69E-46 |
| MS.gene050815 | MS.gene62394 | 0.8134 | 2.61E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene62394 | 0.821017 | 5.05E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene62394 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene62394 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene051535 | MS.gene62394 | 0.815836 | 7.54E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene62394 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene052012 | MS.gene62394 | 0.805726 | 1.16E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene62394 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene62394 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene62394 | 0.831433 | 1.67E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene62394 | 0.844957 | 5.48E-59 | -1.69E-46 |
| MS.gene054542 | MS.gene62394 | 0.806632 | 7.49E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene62394 | 0.810879 | 9.26E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene62394 | 0.833698 | 4.59E-56 | -1.69E-46 |
| MS.gene05510 | MS.gene62394 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene62394 | 0.806032 | 1.00E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene62394 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene62394 | 0.830098 | 3.56E-55 | -1.69E-46 |
| MS.gene056181 | MS.gene62394 | 0.806586 | 7.65E-50 | -1.69E-46 |
| MS.gene056552 | MS.gene62394 | 0.802373 | 5.78E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene62394 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene62394 | 0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene62394 | 0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene62394 | 0.845667 | 3.52E-59 | -1.69E-46 |
| MS.gene058084 | MS.gene62394 | 0.81525 | 1.02E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene62394 | 0.810213 | 1.29E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene62394 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene62394 | 0.837884 | 3.99E-57 | -1.69E-46 |
| MS.gene058435 | MS.gene62394 | 0.801846 | 7.42E-49 | -1.69E-46 |
| MS.gene058503 | MS.gene62394 | 0.833628 | 4.78E-56 | -1.69E-46 |
| MS.gene058505 | MS.gene62394 | 0.80614 | 9.51E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene62394 | 0.802869 | 4.57E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene62394 | 0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene62394 | 0.809856 | 1.54E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene62394 | 0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene059285 | MS.gene62394 | 0.805504 | 1.29E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene62394 | 0.813541 | 2.43E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene62394 | 0.870994 | 9.58E-67 | -1.69E-46 |
| MS.gene06010 | MS.gene62394 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene62394 | 0.827005 | 1.99E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene62394 | 0.861602 | 9.14E-64 | -1.69E-46 |
| MS.gene060685 | MS.gene62394 | 0.850552 | 1.58E-60 | -1.69E-46 |
| MS.gene060802 | MS.gene62394 | 0.920557 | 1.10E-87 | -1.69E-46 |
| MS.gene060803 | MS.gene62394 | 0.863902 | 1.79E-64 | -1.69E-46 |
| MS.gene060869 | MS.gene62394 | 0.833776 | 4.39E-56 | -1.69E-46 |
| MS.gene060870 | MS.gene62394 | 0.844012 | 9.84E-59 | -1.69E-46 |
| MS.gene060998 | MS.gene62394 | 0.816677 | 4.89E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62394.t1 | MTR_0339s0010 | 90.343 | 321 | 27 | 1 | 1 | 321 | 1 | 317 | 0.0 | 556 |
| MS.gene62394.t1 | MTR_4g114770 | 90.343 | 321 | 27 | 1 | 1 | 321 | 16 | 332 | 0.0 | 556 |
| MS.gene62394.t1 | MTR_4g114770 | 90.343 | 321 | 27 | 1 | 1 | 321 | 38 | 354 | 0.0 | 555 |
| MS.gene62394.t1 | MTR_0339s0020 | 88.000 | 300 | 18 | 3 | 1 | 300 | 38 | 319 | 2.26e-162 | 456 |
| MS.gene62394.t1 | MTR_4g114785 | 88.757 | 169 | 15 | 1 | 1 | 169 | 38 | 202 | 2.28e-88 | 264 |
| MS.gene62394.t1 | MTR_6g060860 | 68.182 | 88 | 27 | 1 | 1 | 88 | 38 | 124 | 7.63e-38 | 133 |
| MS.gene62394.t1 | MTR_6g060845 | 60.577 | 104 | 37 | 2 | 1 | 101 | 22 | 124 | 1.58e-37 | 130 |
| MS.gene62394.t1 | MTR_6g060860 | 68.182 | 88 | 27 | 1 | 1 | 88 | 79 | 165 | 1.67e-37 | 132 |
| MS.gene62394.t1 | MTR_6g060845 | 60.577 | 104 | 37 | 2 | 1 | 101 | 38 | 140 | 6.34e-37 | 129 |
| MS.gene62394.t1 | MTR_6g060685 | 67.045 | 88 | 28 | 1 | 1 | 88 | 79 | 165 | 8.03e-36 | 129 |
| MS.gene62394.t1 | MTR_6g052050 | 64.773 | 88 | 29 | 1 | 1 | 88 | 28 | 113 | 4.36e-34 | 121 |
| MS.gene62394.t1 | MTR_4g010210 | 66.265 | 83 | 26 | 2 | 1 | 82 | 3 | 84 | 6.39e-30 | 117 |
| MS.gene62394.t1 | MTR_6g466310 | 51.899 | 79 | 34 | 1 | 30 | 104 | 1 | 79 | 1.06e-17 | 77.4 |
| MS.gene62394.t1 | MTR_6g465040 | 51.899 | 79 | 34 | 1 | 30 | 104 | 1 | 79 | 1.06e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62394.t1 | AT1G15340 | 59.551 | 89 | 33 | 3 | 1 | 88 | 22 | 108 | 1.45e-27 | 111 |
| MS.gene62394.t1 | AT3G15790 | 57.609 | 92 | 35 | 3 | 1 | 90 | 22 | 111 | 1.09e-25 | 103 |
| MS.gene62394.t1 | AT3G15790 | 57.609 | 92 | 35 | 3 | 1 | 90 | 22 | 111 | 1.09e-25 | 103 |
| MS.gene62394.t1 | AT3G15790 | 57.609 | 92 | 35 | 3 | 1 | 90 | 22 | 111 | 1.09e-25 | 103 |
Find 87 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTCTGCTACGTTTCTT+AGG | 0.205617 | 8.2:+13844838 | None:intergenic |
| ACAATTCTCGATGATCTTCT+TGG | 0.243354 | 8.2:+13844907 | None:intergenic |
| CAATCAAATTCCGATATGTT+TGG | 0.322423 | 8.2:+13844946 | None:intergenic |
| ATACTTCTCCAGATGCCTTT+TGG | 0.335850 | 8.2:+13844987 | None:intergenic |
| CGGAATTTGATTGGGGCACT+GGG | 0.341266 | 8.2:-13844936 | MS.gene62394:CDS |
| TCCTGCTTTGTATCCTCTGC+TGG | 0.352023 | 8.2:+13844415 | None:intergenic |
| ACGAAGCAAGATGGTGGATC+TGG | 0.352435 | 8.2:-13844325 | MS.gene62394:CDS |
| TCTTGCTTTGTCTCCTCTGC+TGG | 0.359438 | 8.2:+13844454 | None:intergenic |
| CAAACATATCGGAATTTGAT+TGG | 0.360294 | 8.2:-13844945 | MS.gene62394:CDS |
| GTCTGGAGTTGTTCAGAATA+AGG | 0.361170 | 8.2:-13844536 | MS.gene62394:CDS |
| TCGGAATTTGATTGGGGCAC+TGG | 0.370091 | 8.2:-13844937 | MS.gene62394:CDS |
| ACTTTCTGCTACGTTTCTTA+GGG | 0.378522 | 8.2:+13844839 | None:intergenic |
| TCTTGCTTTGTCTCCTCTGC+TGG | 0.384252 | 8.2:+13844493 | None:intergenic |
| GACAGGATCACCCGCGAGGC+TGG | 0.387354 | 8.2:-13844226 | MS.gene62394:CDS |
| AATCAAATTCCGATATGTTT+GGG | 0.391168 | 8.2:+13844947 | None:intergenic |
| AAACATATCGGAATTTGATT+GGG | 0.399027 | 8.2:-13844944 | MS.gene62394:CDS |
| TCTTGTTTCGTCTCCTCCAC+TGG | 0.409874 | 8.2:+13844376 | None:intergenic |
| TCTTGTCGCGTCTTTCTCCT+TGG | 0.423678 | 8.2:+13844195 | None:intergenic |
| AATAAGGATGTAGAAAAGAT+TGG | 0.432064 | 8.2:-13844520 | MS.gene62394:CDS |
| GACAAAGGAGCTGAGGGGTC+TGG | 0.432101 | 8.2:-13844553 | MS.gene62394:CDS |
| ATTGTGTTCACTTCACCAAC+AGG | 0.434194 | 8.2:-13845024 | MS.gene62394:CDS |
| CGAAGCAAGATGGTGGATCT+GGG | 0.446842 | 8.2:-13844324 | MS.gene62394:CDS |
| TCTTGCTTCGTCTCCTCCAC+TGG | 0.448961 | 8.2:+13844337 | None:intergenic |
| ACAAAGCAAGAAGAAAAGAT+TGG | 0.458501 | 8.2:-13844442 | MS.gene62394:CDS |
| ACAAAGCAAGAAGAAAAGAT+TGG | 0.458501 | 8.2:-13844481 | MS.gene62394:CDS |
| TAACGGTGGCCCAAACATAT+CGG | 0.461224 | 8.2:-13844956 | MS.gene62394:CDS |
| GATCCGTACCAAAAGGCATC+TGG | 0.466902 | 8.2:-13844995 | MS.gene62394:CDS |
| GCAAGAAGCTGGTGAAACTA+AGG | 0.470297 | 8.2:-13844755 | MS.gene62394:CDS |
| GGTTTCACCTCCAGCCTCGC+GGG | 0.474470 | 8.2:+13844216 | None:intergenic |
| TAACGAAAATGAAGATAAGA+AGG | 0.479634 | 8.2:-13844698 | MS.gene62394:CDS |
| GAATCAGAGGTGACTGTGAA+TGG | 0.479774 | 8.2:-13844127 | MS.gene62394:CDS |
| CAAGTCTCCATCAGCAGTGT+TGG | 0.480380 | 8.2:+13844600 | None:intergenic |
| GCAATATAAGTAGTTTCTCC+AGG | 0.485009 | 8.2:+13844640 | None:intergenic |
| GGGAAATCCAACACTGCTGA+TGG | 0.499797 | 8.2:-13844607 | MS.gene62394:CDS |
| TGCTGAGAAAACGGCTGAAG+TGG | 0.506220 | 8.2:-13844272 | MS.gene62394:CDS |
| CAAGGATTTAGAGCCGGAAA+AGG | 0.515807 | 8.2:-13844728 | MS.gene62394:CDS |
| TACTTATATTGCAAAGGATG+AGG | 0.518178 | 8.2:-13844629 | MS.gene62394:CDS |
| GCCAGCAGAGGATACAAAGC+AGG | 0.518269 | 8.2:-13844416 | MS.gene62394:CDS |
| TGCCCCTACTGCTGAGAAAA+CGG | 0.519959 | 8.2:-13844281 | MS.gene62394:CDS |
| GTACGGATCTCGTCTCCTGT+TGG | 0.530266 | 8.2:+13845009 | None:intergenic |
| AAAATAAAGAGGAAGATGAC+AGG | 0.537391 | 8.2:-13844243 | MS.gene62394:CDS |
| TGAAGATAAGAAGGGAGCAG+AGG | 0.540299 | 8.2:-13844689 | MS.gene62394:CDS |
| ACTTATATTGCAAAGGATGA+GGG | 0.544601 | 8.2:-13844628 | MS.gene62394:CDS |
| GACGTGGAAATGCAAGAAGC+TGG | 0.545188 | 8.2:-13844766 | MS.gene62394:CDS |
| GAGACGAGATCCGTACCAAA+AGG | 0.546382 | 8.2:-13845002 | MS.gene62394:CDS |
| CTTTCTGCTACGTTTCTTAG+GGG | 0.561874 | 8.2:+13844840 | None:intergenic |
| AGTAGTTTCTCCAGGTCGAA+TGG | 0.564767 | 8.2:+13844648 | None:intergenic |
| GGATGACAAGGATTTAGAGC+CGG | 0.567635 | 8.2:-13844734 | MS.gene62394:CDS |
| GAGAAGTATTTGAAAACTAA+CGG | 0.568076 | 8.2:-13844973 | MS.gene62394:CDS |
| AGAAAAGATCGGACAGCCAG+TGG | 0.571358 | 8.2:-13844353 | MS.gene62394:CDS |
| TTCAAAGAAAGAAGCTTCTG+AGG | 0.575578 | 8.2:-13844809 | MS.gene62394:CDS |
| AGCTTCTGAGGACGAAGCAG+AGG | 0.581963 | 8.2:-13844797 | MS.gene62394:CDS |
| TGGTTTCACCTCCAGCCTCG+CGG | 0.583893 | 8.2:+13844215 | None:intergenic |
| ATCATCGAGAATTGTTGAGA+AGG | 0.584060 | 8.2:-13844899 | MS.gene62394:CDS |
| AGAAACTACTTATATTGCAA+AGG | 0.585396 | 8.2:-13844635 | MS.gene62394:CDS |
| TTTCTGCTACGTTTCTTAGG+GGG | 0.591296 | 8.2:+13844841 | None:intergenic |
| AACATATCGGAATTTGATTG+GGG | 0.594084 | 8.2:-13844943 | MS.gene62394:CDS |
| ACGAAACAAGAAGAAAAGAT+CGG | 0.598053 | 8.2:-13844364 | MS.gene62394:CDS |
| ATTGACGACAAAGGAGCTGA+GGG | 0.598436 | 8.2:-13844559 | MS.gene62394:CDS |
| AGAAAAGATTGAACAGCCAG+TGG | 0.600966 | 8.2:-13844392 | MS.gene62394:CDS |
| GTGGAGGAGACGAAGCAAGA+TGG | 0.601635 | 8.2:-13844334 | MS.gene62394:CDS |
| AACGAAAATGAAGATAAGAA+GGG | 0.604794 | 8.2:-13844697 | MS.gene62394:CDS |
| GAGGAGACGAAGCAAGATGG+TGG | 0.606090 | 8.2:-13844331 | MS.gene62394:CDS |
| AGGATCACCCGCGAGGCTGG+AGG | 0.607872 | 8.2:-13844223 | MS.gene62394:CDS |
| CTTATATTGCAAAGGATGAG+GGG | 0.609242 | 8.2:-13844627 | MS.gene62394:CDS |
| AAAGAGAATATTGACGACAA+AGG | 0.610881 | 8.2:-13844568 | MS.gene62394:CDS |
| GCATGATGAAGCAAACTACA+AGG | 0.614302 | 8.2:-13844170 | MS.gene62394:CDS |
| AGTGGATGGCGAAAATAAAG+AGG | 0.614877 | 8.2:-13844254 | MS.gene62394:CDS |
| TATGAACAAGGCTGAATCAG+AGG | 0.619422 | 8.2:-13844140 | MS.gene62394:CDS |
| GTTAAAGAGTCCATTCGACC+TGG | 0.624144 | 8.2:-13844658 | MS.gene62394:CDS |
| TATTGACGACAAAGGAGCTG+AGG | 0.627859 | 8.2:-13844560 | MS.gene62394:CDS |
| CAAGGTTCATGATATGAACA+AGG | 0.632417 | 8.2:-13844152 | MS.gene62394:CDS |
| GAGAAAACGGCTGAAGTGGA+TGG | 0.633447 | 8.2:-13844268 | MS.gene62394:CDS |
| TGGTGAAACTAAGGATGACA+AGG | 0.634779 | 8.2:-13844746 | MS.gene62394:CDS |
| GAAGCAAGATGGTGGATCTG+GGG | 0.642765 | 8.2:-13844323 | MS.gene62394:CDS |
| AAAGATTGAACAGCCAGTGG+AGG | 0.643021 | 8.2:-13844389 | MS.gene62394:CDS |
| AGCAGAGGAGACAAAAGACG+TGG | 0.647050 | 8.2:-13844782 | MS.gene62394:CDS |
| AAAGATCGGACAGCCAGTGG+AGG | 0.654588 | 8.2:-13844350 | MS.gene62394:CDS |
| GAGAATTGTTGAGAAGGTCA+AGG | 0.659236 | 8.2:-13844893 | MS.gene62394:CDS |
| AAAGATTGGACTGCCAGCAG+AGG | 0.662242 | 8.2:-13844506 | MS.gene62394:CDS |
| AAAGATTGGACAGCCAGCAG+AGG | 0.666945 | 8.2:-13844428 | MS.gene62394:CDS |
| CGAGGCTGGAGGTGAAACCA+AGG | 0.671676 | 8.2:-13844212 | MS.gene62394:CDS |
| AAAGATTGGACAGCCAGCAG+AGG | 0.672505 | 8.2:-13844467 | MS.gene62394:CDS |
| GGAATTTGATTGGGGCACTG+GGG | 0.689173 | 8.2:-13844935 | MS.gene62394:CDS |
| TTGACGACAAAGGAGCTGAG+GGG | 0.744956 | 8.2:-13844558 | MS.gene62394:CDS |
| AGATGACAGGATCACCCGCG+AGG | 0.746796 | 8.2:-13844230 | MS.gene62394:CDS |
| AAGTATTTGAAAACTAACGG+TGG | 0.749054 | 8.2:-13844970 | MS.gene62394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAACATATCGGAATTTGATT+GGG | - | chr8.2:13844239-13844258 | MS.gene62394:CDS | 25.0% |
| ! | AACGAAAATGAAGATAAGAA+GGG | - | chr8.2:13844486-13844505 | MS.gene62394:CDS | 25.0% |
| ! | AATAAGGATGTAGAAAAGAT+TGG | - | chr8.2:13844663-13844682 | MS.gene62394:CDS | 25.0% |
| ! | AATCAAATTCCGATATGTTT+GGG | + | chr8.2:13844239-13844258 | None:intergenic | 25.0% |
| ! | AGAAACTACTTATATTGCAA+AGG | - | chr8.2:13844548-13844567 | MS.gene62394:CDS | 25.0% |
| ! | TAACGAAAATGAAGATAAGA+AGG | - | chr8.2:13844485-13844504 | MS.gene62394:CDS | 25.0% |
| !!! | AACACAATCTCATTTTTCTT+GGG | + | chr8.2:13844147-13844166 | None:intergenic | 25.0% |
| !!! | GAGAAGTATTTGAAAACTAA+CGG | - | chr8.2:13844210-13844229 | MS.gene62394:CDS | 25.0% |
| AAAATAAAGAGGAAGATGAC+AGG | - | chr8.2:13844940-13844959 | MS.gene62394:CDS | 30.0% | |
| AAAGAGAATATTGACGACAA+AGG | - | chr8.2:13844615-13844634 | MS.gene62394:CDS | 30.0% | |
| AACATATCGGAATTTGATTG+GGG | - | chr8.2:13844240-13844259 | MS.gene62394:CDS | 30.0% | |
| AAGTATTTGAAAACTAACGG+TGG | - | chr8.2:13844213-13844232 | MS.gene62394:CDS | 30.0% | |
| ACAAAGCAAGAAGAAAAGAT+TGG | - | chr8.2:13844702-13844721 | MS.gene62394:CDS | 30.0% | |
| ACGAAACAAGAAGAAAAGAT+CGG | - | chr8.2:13844819-13844838 | MS.gene62394:CDS | 30.0% | |
| ACTTATATTGCAAAGGATGA+GGG | - | chr8.2:13844555-13844574 | MS.gene62394:CDS | 30.0% | |
| CAAACATATCGGAATTTGAT+TGG | - | chr8.2:13844238-13844257 | MS.gene62394:CDS | 30.0% | |
| CAATCAAATTCCGATATGTT+TGG | + | chr8.2:13844240-13844259 | None:intergenic | 30.0% | |
| TACTTATATTGCAAAGGATG+AGG | - | chr8.2:13844554-13844573 | MS.gene62394:CDS | 30.0% | |
| !! | GAACACAATCTCATTTTTCT+TGG | + | chr8.2:13844148-13844167 | None:intergenic | 30.0% |
| ACAATTCTCGATGATCTTCT+TGG | + | chr8.2:13844279-13844298 | None:intergenic | 35.0% | |
| ACTTTCTGCTACGTTTCTTA+GGG | + | chr8.2:13844347-13844366 | None:intergenic | 35.0% | |
| ATCATCGAGAATTGTTGAGA+AGG | - | chr8.2:13844284-13844303 | MS.gene62394:CDS | 35.0% | |
| CAAGGTTCATGATATGAACA+AGG | - | chr8.2:13845031-13845050 | MS.gene62394:CDS | 35.0% | |
| CTTATATTGCAAAGGATGAG+GGG | - | chr8.2:13844556-13844575 | MS.gene62394:CDS | 35.0% | |
| GCAATATAAGTAGTTTCTCC+AGG | + | chr8.2:13844546-13844565 | None:intergenic | 35.0% | |
| TTCAAAGAAAGAAGCTTCTG+AGG | - | chr8.2:13844374-13844393 | MS.gene62394:CDS | 35.0% | |
| ! | TCGTTAACAACTTCCTTTTC+CGG | + | chr8.2:13844471-13844490 | None:intergenic | 35.0% |
| AGAAAAGATTGAACAGCCAG+TGG | - | chr8.2:13844791-13844810 | MS.gene62394:CDS | 40.0% | |
| AGTGGATGGCGAAAATAAAG+AGG | - | chr8.2:13844929-13844948 | MS.gene62394:CDS | 40.0% | |
| ATTGTGTTCACTTCACCAAC+AGG | - | chr8.2:13844159-13844178 | MS.gene62394:CDS | 40.0% | |
| CTTTCTGCTACGTTTCTTAG+GGG | + | chr8.2:13844346-13844365 | None:intergenic | 40.0% | |
| GACTTTCTGCTACGTTTCTT+AGG | + | chr8.2:13844348-13844367 | None:intergenic | 40.0% | |
| GAGAATTGTTGAGAAGGTCA+AGG | - | chr8.2:13844290-13844309 | MS.gene62394:CDS | 40.0% | |
| GCATGATGAAGCAAACTACA+AGG | - | chr8.2:13845013-13845032 | MS.gene62394:CDS | 40.0% | |
| TATGAACAAGGCTGAATCAG+AGG | - | chr8.2:13845043-13845062 | MS.gene62394:CDS | 40.0% | |
| TGGTGAAACTAAGGATGACA+AGG | - | chr8.2:13844437-13844456 | MS.gene62394:CDS | 40.0% | |
| TTTCTGCTACGTTTCTTAGG+GGG | + | chr8.2:13844345-13844364 | None:intergenic | 40.0% | |
| ! | ATACTTCTCCAGATGCCTTT+TGG | + | chr8.2:13844199-13844218 | None:intergenic | 40.0% |
| ! | GTCTGGAGTTGTTCAGAATA+AGG | - | chr8.2:13844647-13844666 | MS.gene62394:CDS | 40.0% |
| !!! | TTGGGTGTTCCTGACTTTTT+TGG | + | chr8.2:13844129-13844148 | None:intergenic | 40.0% |
| AAAGATTGAACAGCCAGTGG+AGG | - | chr8.2:13844794-13844813 | MS.gene62394:CDS | 45.0% | |
| AGTAGTTTCTCCAGGTCGAA+TGG | + | chr8.2:13844538-13844557 | None:intergenic | 45.0% | |
| ATTGACGACAAAGGAGCTGA+GGG | - | chr8.2:13844624-13844643 | MS.gene62394:CDS | 45.0% | |
| GAATCAGAGGTGACTGTGAA+TGG | - | chr8.2:13845056-13845075 | MS.gene62394:CDS | 45.0% | |
| GCAAGAAGCTGGTGAAACTA+AGG | - | chr8.2:13844428-13844447 | MS.gene62394:CDS | 45.0% | |
| GTTAAAGAGTCCATTCGACC+TGG | - | chr8.2:13844525-13844544 | MS.gene62394:CDS | 45.0% | |
| TAACGGTGGCCCAAACATAT+CGG | - | chr8.2:13844227-13844246 | MS.gene62394:CDS | 45.0% | |
| TATTGACGACAAAGGAGCTG+AGG | - | chr8.2:13844623-13844642 | MS.gene62394:CDS | 45.0% | |
| TGAAGATAAGAAGGGAGCAG+AGG | - | chr8.2:13844494-13844513 | MS.gene62394:CDS | 45.0% | |
| ! | CAAGGATTTAGAGCCGGAAA+AGG | - | chr8.2:13844455-13844474 | MS.gene62394:CDS | 45.0% |
| ! | GGATGACAAGGATTTAGAGC+CGG | - | chr8.2:13844449-13844468 | MS.gene62394:CDS | 45.0% |
| ! | TCTCCAGATGCCTTTTGGTA+CGG | + | chr8.2:13844194-13844213 | None:intergenic | 45.0% |
| !! | TTCTTAGGGGGCTCACTTTT+TGG | + | chr8.2:13844333-13844352 | None:intergenic | 45.0% |
| AAAGATTGGACAGCCAGCAG+AGG | - | chr8.2:13844716-13844735 | MS.gene62394:CDS | 50.0% | |
| AAAGATTGGACTGCCAGCAG+AGG | - | chr8.2:13844677-13844696 | MS.gene62394:CDS | 50.0% | |
| AGAAAAGATCGGACAGCCAG+TGG | - | chr8.2:13844830-13844849 | MS.gene62394:CDS | 50.0% | |
| AGCAGAGGAGACAAAAGACG+TGG | - | chr8.2:13844401-13844420 | MS.gene62394:CDS | 50.0% | |
| CAAGTCTCCATCAGCAGTGT+TGG | + | chr8.2:13844586-13844605 | None:intergenic | 50.0% | |
| GACGTGGAAATGCAAGAAGC+TGG | - | chr8.2:13844417-13844436 | MS.gene62394:CDS | 50.0% | |
| GAGAAAACGGCTGAAGTGGA+TGG | - | chr8.2:13844915-13844934 | MS.gene62394:CDS | 50.0% | |
| GAGACGAGATCCGTACCAAA+AGG | - | chr8.2:13844181-13844200 | MS.gene62394:CDS | 50.0% | |
| GGGAAATCCAACACTGCTGA+TGG | - | chr8.2:13844576-13844595 | MS.gene62394:CDS | 50.0% | |
| TCCTGCTTTGTATCCTCTGC+TGG | + | chr8.2:13844771-13844790 | None:intergenic | 50.0% | |
| TCGGAATTTGATTGGGGCAC+TGG | - | chr8.2:13844246-13844265 | MS.gene62394:CDS | 50.0% | |
| TCTTGCTTTGTCTCCTCTGC+TGG | + | chr8.2:13844693-13844712 | None:intergenic | 50.0% | |
| TCTTGTCGCGTCTTTCTCCT+TGG | + | chr8.2:13844991-13845010 | None:intergenic | 50.0% | |
| TGCCCCTACTGCTGAGAAAA+CGG | - | chr8.2:13844902-13844921 | MS.gene62394:CDS | 50.0% | |
| TGCTGAGAAAACGGCTGAAG+TGG | - | chr8.2:13844911-13844930 | MS.gene62394:CDS | 50.0% | |
| TTGACGACAAAGGAGCTGAG+GGG | - | chr8.2:13844625-13844644 | MS.gene62394:CDS | 50.0% | |
| ! | CGGAATTTGATTGGGGCACT+GGG | - | chr8.2:13844247-13844266 | MS.gene62394:CDS | 50.0% |
| ! | TCTTGTTTCGTCTCCTCCAC+TGG | + | chr8.2:13844810-13844829 | None:intergenic | 50.0% |
| !! | ACGAAGCAAGATGGTGGATC+TGG | - | chr8.2:13844858-13844877 | MS.gene62394:CDS | 50.0% |
| !! | AGCCGTTTTCTCAGCAGTAG+GGG | + | chr8.2:13844907-13844926 | None:intergenic | 50.0% |
| !! | CAGCCGTTTTCTCAGCAGTA+GGG | + | chr8.2:13844908-13844927 | None:intergenic | 50.0% |
| !! | CGAAGCAAGATGGTGGATCT+GGG | - | chr8.2:13844859-13844878 | MS.gene62394:CDS | 50.0% |
| !! | GAAGCAAGATGGTGGATCTG+GGG | - | chr8.2:13844860-13844879 | MS.gene62394:CDS | 50.0% |
| !! | GATCCGTACCAAAAGGCATC+TGG | - | chr8.2:13844188-13844207 | MS.gene62394:CDS | 50.0% |
| !! | GGAATTTGATTGGGGCACTG+GGG | - | chr8.2:13844248-13844267 | MS.gene62394:CDS | 50.0% |
| !! | TCAGCCGTTTTCTCAGCAGT+AGG | + | chr8.2:13844909-13844928 | None:intergenic | 50.0% |
| !!! | TCACTTTTTGGCTCTGCTGG+AGG | + | chr8.2:13844321-13844340 | None:intergenic | 50.0% |
| AAAGATCGGACAGCCAGTGG+AGG | - | chr8.2:13844833-13844852 | MS.gene62394:CDS | 55.0% | |
| GAGGAGACGAAGCAAGATGG+TGG | - | chr8.2:13844852-13844871 | MS.gene62394:CDS | 55.0% | |
| GCCAGCAGAGGATACAAAGC+AGG | - | chr8.2:13844767-13844786 | MS.gene62394:CDS | 55.0% | |
| GTACGGATCTCGTCTCCTGT+TGG | + | chr8.2:13844177-13844196 | None:intergenic | 55.0% | |
| GTGGAGGAGACGAAGCAAGA+TGG | - | chr8.2:13844849-13844868 | MS.gene62394:CDS | 55.0% | |
| TCTTGCTTCGTCTCCTCCAC+TGG | + | chr8.2:13844849-13844868 | None:intergenic | 55.0% | |
| ! | AGCTTCTGAGGACGAAGCAG+AGG | - | chr8.2:13844386-13844405 | MS.gene62394:CDS | 55.0% |
| !!! | GGCTCACTTTTTGGCTCTGC+TGG | + | chr8.2:13844324-13844343 | None:intergenic | 55.0% |
| AGATGACAGGATCACCCGCG+AGG | - | chr8.2:13844953-13844972 | MS.gene62394:CDS | 60.0% | |
| CGAGGCTGGAGGTGAAACCA+AGG | - | chr8.2:13844971-13844990 | MS.gene62394:CDS | 60.0% | |
| GACAAAGGAGCTGAGGGGTC+TGG | - | chr8.2:13844630-13844649 | MS.gene62394:CDS | 60.0% | |
| TGGTTTCACCTCCAGCCTCG+CGG | + | chr8.2:13844971-13844990 | None:intergenic | 60.0% | |
| GGTTTCACCTCCAGCCTCGC+GGG | + | chr8.2:13844970-13844989 | None:intergenic | 65.0% | |
| AGGATCACCCGCGAGGCTGG+AGG | - | chr8.2:13844960-13844979 | MS.gene62394:CDS | 70.0% | |
| GACAGGATCACCCGCGAGGC+TGG | - | chr8.2:13844957-13844976 | MS.gene62394:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 13844120 | 13845085 | 13844120 | ID=MS.gene62394 |
| chr8.2 | mRNA | 13844120 | 13845085 | 13844120 | ID=MS.gene62394.t1;Parent=MS.gene62394 |
| chr8.2 | exon | 13844120 | 13845085 | 13844120 | ID=MS.gene62394.t1.exon1;Parent=MS.gene62394.t1 |
| chr8.2 | CDS | 13844120 | 13845085 | 13844120 | ID=cds.MS.gene62394.t1;Parent=MS.gene62394.t1 |
| Gene Sequence |
| Protein sequence |
