Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97270.t1 | XP_013443259.1 | 71.1 | 166 | 38 | 3 | 1 | 157 | 1 | 165 | 2.70E-57 | 231.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97270.t1 | Q9SA16 | 40.1 | 152 | 73 | 6 | 21 | 155 | 27 | 177 | 1.2e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97270.t1 | B7FH95 | 71.1 | 166 | 38 | 3 | 1 | 157 | 1 | 165 | 2.0e-57 | 231.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene97270 | 0.820924 | 5.30E-53 | -1.69E-46 |
| MS.gene049151 | MS.gene97270 | 0.80768 | 4.49E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene97270 | 0.822868 | 1.88E-53 | -1.69E-46 |
| MS.gene049230 | MS.gene97270 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene97270 | 0.867157 | 1.68E-65 | -1.69E-46 |
| MS.gene049758 | MS.gene97270 | 0.800488 | 1.41E-48 | -1.69E-46 |
| MS.gene049910 | MS.gene97270 | 0.804192 | 2.43E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene97270 | 0.834212 | 3.42E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene97270 | 0.817539 | 3.13E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene97270 | 0.821184 | 4.62E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene97270 | -0.828559 | 8.41E-55 | -1.69E-46 |
| MS.gene050629 | MS.gene97270 | -0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene050642 | MS.gene97270 | 0.802603 | 5.19E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene97270 | 0.857171 | 1.96E-62 | -1.69E-46 |
| MS.gene050763 | MS.gene97270 | 0.859651 | 3.57E-63 | -1.69E-46 |
| MS.gene050900 | MS.gene97270 | 0.812943 | 3.29E-51 | -1.69E-46 |
| MS.gene050971 | MS.gene97270 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene97270 | 0.836172 | 1.09E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene97270 | 0.804957 | 1.68E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene97270 | 0.827346 | 1.65E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene97270 | 0.871673 | 5.71E-67 | -1.69E-46 |
| MS.gene052188 | MS.gene97270 | 0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene052255 | MS.gene97270 | 0.808133 | 3.60E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene97270 | 0.804104 | 2.54E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene97270 | 0.809481 | 1.85E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene97270 | 0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene053073 | MS.gene97270 | 0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene97270 | 0.853475 | 2.33E-61 | -1.69E-46 |
| MS.gene053405 | MS.gene97270 | 0.811326 | 7.40E-51 | -1.69E-46 |
| MS.gene053494 | MS.gene97270 | 0.891887 | 2.63E-74 | -1.69E-46 |
| MS.gene053577 | MS.gene97270 | 0.821447 | 4.02E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene97270 | 0.811361 | 7.28E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene97270 | 0.80618 | 9.32E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene97270 | 0.843083 | 1.74E-58 | -1.69E-46 |
| MS.gene054379 | MS.gene97270 | 0.868057 | 8.66E-66 | -1.69E-46 |
| MS.gene054542 | MS.gene97270 | 0.815722 | 7.99E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene97270 | 0.872868 | 2.28E-67 | -1.69E-46 |
| MS.gene05510 | MS.gene97270 | 0.831964 | 1.24E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene97270 | 0.889271 | 2.81E-73 | -1.69E-46 |
| MS.gene05595 | MS.gene97270 | 0.826735 | 2.30E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene97270 | 0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene97270 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene97270 | -0.806387 | 8.43E-50 | -1.69E-46 |
| MS.gene057194 | MS.gene97270 | 0.808431 | 3.11E-50 | -1.69E-46 |
| MS.gene057199 | MS.gene97270 | 0.811172 | 8.00E-51 | -1.69E-46 |
| MS.gene057394 | MS.gene97270 | 0.808732 | 2.68E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene97270 | 0.821351 | 4.23E-53 | -1.69E-46 |
| MS.gene057610 | MS.gene97270 | 0.804441 | 2.16E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene97270 | 0.848332 | 6.56E-60 | -1.69E-46 |
| MS.gene057750 | MS.gene97270 | 0.839447 | 1.58E-57 | -1.69E-46 |
| MS.gene057929 | MS.gene97270 | 0.830549 | 2.76E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene97270 | 0.841288 | 5.20E-58 | -1.69E-46 |
| MS.gene058435 | MS.gene97270 | 0.847758 | 9.44E-60 | -1.69E-46 |
| MS.gene058503 | MS.gene97270 | 0.838316 | 3.09E-57 | -1.69E-46 |
| MS.gene058505 | MS.gene97270 | 0.81149 | 6.82E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene97270 | 0.809678 | 1.68E-50 | -1.69E-46 |
| MS.gene05872 | MS.gene97270 | 0.808653 | 2.79E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene97270 | 0.844797 | 6.05E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene97270 | 0.85264 | 4.04E-61 | -1.69E-46 |
| MS.gene059420 | MS.gene97270 | 0.800903 | 1.16E-48 | -1.69E-46 |
| MS.gene059511 | MS.gene97270 | 0.801473 | 8.86E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene97270 | 0.835225 | 1.90E-56 | -1.69E-46 |
| MS.gene059807 | MS.gene97270 | 0.828009 | 1.14E-54 | -1.69E-46 |
| MS.gene059876 | MS.gene97270 | 0.83596 | 1.24E-56 | -1.69E-46 |
| MS.gene060084 | MS.gene97270 | 0.829728 | 4.38E-55 | -1.69E-46 |
| MS.gene060495 | MS.gene97270 | 0.865745 | 4.73E-65 | -1.69E-46 |
| MS.gene060683 | MS.gene97270 | 0.847623 | 1.03E-59 | -1.69E-46 |
| MS.gene060685 | MS.gene97270 | 0.842074 | 3.23E-58 | -1.69E-46 |
| MS.gene060802 | MS.gene97270 | 0.849407 | 3.30E-60 | -1.69E-46 |
| MS.gene060803 | MS.gene97270 | 0.801421 | 9.07E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene97270 | 0.839215 | 1.81E-57 | -1.69E-46 |
| MS.gene060942 | MS.gene97270 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene060943 | MS.gene97270 | 0.847502 | 1.11E-59 | -1.69E-46 |
| MS.gene060998 | MS.gene97270 | 0.862104 | 6.42E-64 | -1.69E-46 |
| MS.gene061002 | MS.gene97270 | 0.838938 | 2.14E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene97270 | 0.813986 | 1.94E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97270.t1 | MTR_0026s0010 | 71.084 | 166 | 38 | 3 | 1 | 157 | 1 | 165 | 1.10e-73 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97270.t1 | AT1G10155 | 41.558 | 154 | 71 | 6 | 20 | 155 | 29 | 181 | 1.06e-26 | 99.8 |
| MS.gene97270.t1 | AT1G31200 | 39.370 | 127 | 62 | 5 | 43 | 155 | 3 | 128 | 8.47e-18 | 75.1 |
Find 42 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGGACTCAACATTATA+TGG | 0.205970 | 2.1:+39745230 | MS.gene97270:CDS |
| GAGGAAAAGGAACTTCATTT+TGG | 0.223452 | 2.1:+39746639 | MS.gene97270:CDS |
| CATATAATGTTGAGTCCTTT+TGG | 0.242983 | 2.1:-39745229 | None:intergenic |
| GATGGCTAAAGTTGGGAAAA+AGG | 0.285093 | 2.1:+39746521 | MS.gene97270:CDS |
| TCAAGCTTAGCCTCATCTTT+TGG | 0.301147 | 2.1:-39746600 | None:intergenic |
| CAGAGCTGACACAAGTTTCA+TGG | 0.313789 | 2.1:+39746385 | MS.gene97270:CDS |
| GTTTCATGGTTGGAGGTATC+TGG | 0.319576 | 2.1:+39746399 | MS.gene97270:CDS |
| GTTCCCCAACCGAAACCTTC+TGG | 0.324475 | 2.1:-39746480 | None:intergenic |
| AAAGTAAAAGTAGTAGATAA+AGG | 0.334874 | 2.1:+39746423 | MS.gene97270:CDS |
| ATGAAGTATGGAGTGGAAAA+TGG | 0.336655 | 2.1:+39746667 | MS.gene97270:CDS |
| GATATACTTGTGCAGGTTGA+TGG | 0.415541 | 2.1:+39745190 | MS.gene97270:intron |
| AAGTAAAAGTAGTAGATAAA+GGG | 0.432345 | 2.1:+39746424 | MS.gene97270:CDS |
| AAAAGGACTCAACATTATAT+GGG | 0.432953 | 2.1:+39745231 | MS.gene97270:CDS |
| GGGGAAATGATCCTCGCTAC+TGG | 0.437766 | 2.1:+39745251 | MS.gene97270:CDS |
| AAGCCAGAAGGTTTCGGTTG+GGG | 0.447465 | 2.1:+39746477 | MS.gene97270:CDS |
| TGAAGTGTCAGGTGAGGAAA+AGG | 0.454863 | 2.1:+39746626 | MS.gene97270:CDS |
| TAAGCCAGAAGGTTTCGGTT+GGG | 0.457218 | 2.1:+39746476 | MS.gene97270:CDS |
| GAAGTTAAGCCAGAAGGTTT+CGG | 0.458947 | 2.1:+39746471 | MS.gene97270:CDS |
| GGGAACCAGCACAGATGTAC+TGG | 0.493026 | 2.1:+39746497 | MS.gene97270:CDS |
| AAGCTTGAAATTGAAGTGTC+AGG | 0.504703 | 2.1:+39746615 | MS.gene97270:CDS |
| GAAATATACAGTGAAATTTG+AGG | 0.518771 | 2.1:+39746446 | MS.gene97270:CDS |
| AAAGGGAACATATAAATATG+AGG | 0.525864 | 2.1:+39746539 | MS.gene97270:CDS |
| GACACAAGTTTCATGGTTGG+AGG | 0.541826 | 2.1:+39746392 | MS.gene97270:CDS |
| GCTGACACAAGTTTCATGGT+TGG | 0.548605 | 2.1:+39746389 | MS.gene97270:CDS |
| CATCACCAGTACATCTGTGC+TGG | 0.558599 | 2.1:-39746502 | None:intergenic |
| GGAGGGTCCGCTGTCTGATG+AGG | 0.561656 | 2.1:-39743499 | None:intergenic |
| GTCTGATGAGGCTTTCTGAA+AGG | 0.565844 | 2.1:-39743487 | None:intergenic |
| AAGTGCGAGATAAAACCAAA+AGG | 0.571191 | 2.1:+39745214 | MS.gene97270:CDS |
| TACTGGTGATGGCTAAAGTT+GGG | 0.572904 | 2.1:+39746514 | MS.gene97270:CDS |
| TGGAGTGGAAAATGGAAAGG+AGG | 0.576113 | 2.1:+39746675 | MS.gene97270:CDS |
| TTAAGCCAGAAGGTTTCGGT+TGG | 0.579224 | 2.1:+39746475 | MS.gene97270:CDS |
| GTACTGGTGATGGCTAAAGT+TGG | 0.597259 | 2.1:+39746513 | MS.gene97270:CDS |
| CAGCACAGATGTACTGGTGA+TGG | 0.597825 | 2.1:+39746503 | MS.gene97270:CDS |
| GTATGGAGTGGAAAATGGAA+AGG | 0.608777 | 2.1:+39746672 | MS.gene97270:CDS |
| ATATACAGTGAAATTTGAGG+TGG | 0.617992 | 2.1:+39746449 | MS.gene97270:CDS |
| GACAACCATTCCAAAAGATG+AGG | 0.618532 | 2.1:+39746590 | MS.gene97270:CDS |
| GAGGTGGAAGTTAAGCCAGA+AGG | 0.632622 | 2.1:+39746465 | MS.gene97270:CDS |
| AAAGGACTCAACATTATATG+GGG | 0.648494 | 2.1:+39745232 | MS.gene97270:CDS |
| TGAAATTGAAGTGTCAGGTG+AGG | 0.650518 | 2.1:+39746620 | MS.gene97270:CDS |
| GGATTGTATGAAGTATGGAG+TGG | 0.655368 | 2.1:+39746660 | MS.gene97270:CDS |
| GAGGTAGTGCATCTAGAGTG+TGG | 0.663909 | 2.1:+39746558 | MS.gene97270:CDS |
| CAGAAAGCCTCATCAGACAG+CGG | 0.702058 | 2.1:+39743492 | MS.gene97270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr2.1:39746128-39746147 | MS.gene97270:intron | 10.0% |
| !! | ATAAAAAATAAAAGGAAATT+TGG | - | chr2.1:39744166-39744185 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr2.1:39746127-39746146 | MS.gene97270:intron | 10.0% |
| !! | TATGTATATGTATAAATTAA+GGG | + | chr2.1:39745587-39745606 | MS.gene97270:intron | 10.0% |
| !!! | TTATTTTTGTAAAGAAAATT+AGG | + | chr2.1:39744491-39744510 | MS.gene97270:intron | 10.0% |
| !!! | TTTTTATTACTCTTATTTTT+TGG | + | chr2.1:39743770-39743789 | MS.gene97270:intron | 10.0% |
| !! | AAAAAAAAATATTTGGATTG+CGG | - | chr2.1:39745020-39745039 | None:intergenic | 15.0% |
| !! | AAAAAAACATGAAAAAAGTT+AGG | - | chr2.1:39744739-39744758 | None:intergenic | 15.0% |
| !! | AAAAAACATGAAAAAAGTTA+GGG | - | chr2.1:39744738-39744757 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr2.1:39746129-39746148 | MS.gene97270:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr2.1:39746193-39746212 | MS.gene97270:intron | 15.0% |
| !! | GTATGTATATGTATAAATTA+AGG | + | chr2.1:39745586-39745605 | MS.gene97270:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr2.1:39746192-39746211 | MS.gene97270:intron | 15.0% |
| !! | TTAATCTTGTAACAAATTAA+CGG | - | chr2.1:39744284-39744303 | None:intergenic | 15.0% |
| !! | TTCCATAAAAAAGAAAAAAA+GGG | + | chr2.1:39743667-39743686 | MS.gene97270:intron | 15.0% |
| !!! | AAATCGAAGAAATTTTTTAA+AGG | + | chr2.1:39745985-39746004 | MS.gene97270:intron | 15.0% |
| !!! | AATCGAAGAAATTTTTTAAA+GGG | + | chr2.1:39745986-39746005 | MS.gene97270:intron | 15.0% |
| !!! | ATAAGTTATTTTAAGTTTGA+AGG | + | chr2.1:39744337-39744356 | MS.gene97270:intron | 15.0% |
| !!! | ATCCAAATATTTTTTTTTTG+TGG | + | chr2.1:39745022-39745041 | MS.gene97270:intron | 15.0% |
| !!! | TATGAATTTTATATTTTTGG+CGG | - | chr2.1:39745857-39745876 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTTTTTTTGTTG+AGG | + | chr2.1:39745397-39745416 | MS.gene97270:intron | 15.0% |
| !!! | TTTTTCATGTTTTTTTTACA+AGG | + | chr2.1:39744743-39744762 | MS.gene97270:intron | 15.0% |
| !! | AAAAAACAACAAATATCAAG+AGG | - | chr2.1:39745386-39745405 | None:intergenic | 20.0% |
| !! | AAAAACATGAAAAAAGTTAG+GGG | - | chr2.1:39744737-39744756 | None:intergenic | 20.0% |
| !! | AAAAAGATTCAGATTATTAC+AGG | - | chr2.1:39744209-39744228 | None:intergenic | 20.0% |
| !! | AAAGTAAAAGTAGTAGATAA+AGG | + | chr2.1:39746423-39746442 | MS.gene97270:CDS | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr2.1:39746152-39746171 | MS.gene97270:intron | 20.0% |
| !! | AAGTAAAAGTAGTAGATAAA+GGG | + | chr2.1:39746424-39746443 | MS.gene97270:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr2.1:39746225-39746244 | MS.gene97270:intron | 20.0% |
| !! | ATTTATATAATTAACAACGG+AGG | + | chr2.1:39745166-39745185 | MS.gene97270:intron | 20.0% |
| !! | CACCACAAAAAAAAAATATT+TGG | - | chr2.1:39745027-39745046 | None:intergenic | 20.0% |
| !! | GTTCCATAAAAAAGAAAAAA+AGG | + | chr2.1:39743666-39743685 | MS.gene97270:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr2.1:39746226-39746245 | MS.gene97270:intron | 20.0% |
| !!! | AAGAAACTTTTTTTTGAAAG+AGG | + | chr2.1:39744518-39744537 | MS.gene97270:intron | 20.0% |
| !!! | ACATTTTATATACTGATTTG+AGG | + | chr2.1:39745446-39745465 | MS.gene97270:intron | 20.0% |
| !!! | ACCATTTTAAAACTATTTGT+TGG | + | chr2.1:39744593-39744612 | MS.gene97270:intron | 20.0% |
| !!! | ACTTTTTCTTGATAAAGTAA+TGG | - | chr2.1:39744378-39744397 | None:intergenic | 20.0% |
| !!! | CCATTTTAAAACTATTTGTT+GGG | + | chr2.1:39744594-39744613 | MS.gene97270:intron | 20.0% |
| !!! | CTAAAAACATATTTAAAGCA+TGG | + | chr2.1:39746041-39746060 | MS.gene97270:intron | 20.0% |
| !!! | CTTTTTCTTGATAAAGTAAT+GGG | - | chr2.1:39744377-39744396 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr2.1:39746262-39746281 | MS.gene97270:intron | 20.0% |
| !!! | TGTCATTTTGTCTATTTATA+AGG | + | chr2.1:39744963-39744982 | MS.gene97270:intron | 20.0% |
| !!! | TTCCCTTTTTTTCTTTTTTA+TGG | - | chr2.1:39743672-39743691 | None:intergenic | 20.0% |
| ! | AAAAGGACTCAACATTATAT+GGG | + | chr2.1:39745231-39745250 | MS.gene97270:CDS | 25.0% |
| ! | AAACTTGCACATATAAATGA+AGG | - | chr2.1:39744933-39744952 | None:intergenic | 25.0% |
| ! | AAAGGGAACATATAAATATG+AGG | + | chr2.1:39746539-39746558 | MS.gene97270:CDS | 25.0% |
| ! | ACACAAATTTCTTCTTAGTT+TGG | - | chr2.1:39743648-39743667 | None:intergenic | 25.0% |
| ! | ACATGCTAAGAATTATTTGA+GGG | + | chr2.1:39743708-39743727 | MS.gene97270:intron | 25.0% |
| ! | CACAAATTTCTTCTTAGTTT+GGG | - | chr2.1:39743647-39743666 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr2.1:39746151-39746170 | MS.gene97270:intron | 25.0% |
| ! | GAAATATACAGTGAAATTTG+AGG | + | chr2.1:39746446-39746465 | MS.gene97270:CDS | 25.0% |
| ! | TAGTGATCTTTACAAAATGA+TGG | + | chr2.1:39744450-39744469 | MS.gene97270:intron | 25.0% |
| ! | TATACATACATATGTGAAGA+AGG | - | chr2.1:39745575-39745594 | None:intergenic | 25.0% |
| ! | TTATAGATACTAAAAGTCGA+AGG | - | chr2.1:39745674-39745693 | None:intergenic | 25.0% |
| !! | AAGTCGAAGGAAAATTTTAT+AGG | - | chr2.1:39745661-39745680 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr2.1:39745721-39745740 | None:intergenic | 25.0% |
| !! | AGTCGAAGGAAAATTTTATA+GGG | - | chr2.1:39745660-39745679 | None:intergenic | 25.0% |
| !! | ATGAGTTGACTTAAAAATAG+GGG | - | chr2.1:39745719-39745738 | None:intergenic | 25.0% |
| !! | ATTTTGGATTGTATGAAGTA+TGG | + | chr2.1:39746655-39746674 | MS.gene97270:CDS | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr2.1:39745720-39745739 | None:intergenic | 25.0% |
| !! | TACATATGAGTTTGCTTAAA+AGG | + | chr2.1:39745923-39745942 | MS.gene97270:intron | 25.0% |
| !! | TTTACAAAATGATGGAAAGA+TGG | + | chr2.1:39744458-39744477 | MS.gene97270:intron | 25.0% |
| !!! | CCCAACAAATAGTTTTAAAA+TGG | - | chr2.1:39744597-39744616 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr2.1:39746261-39746280 | MS.gene97270:intron | 25.0% |
| !!! | GTTATTTTAAGTTTGAAGGT+TGG | + | chr2.1:39744341-39744360 | MS.gene97270:intron | 25.0% |
| !!! | TATTTTTTTTTTGTGGTGTC+CGG | + | chr2.1:39745029-39745048 | MS.gene97270:intron | 25.0% |
| AAAGGACTCAACATTATATG+GGG | + | chr2.1:39745232-39745251 | MS.gene97270:CDS | 30.0% | |
| ACGAATGATAAAGACATTTG+TGG | - | chr2.1:39743896-39743915 | None:intergenic | 30.0% | |
| ATATACAGTGAAATTTGAGG+TGG | + | chr2.1:39746449-39746468 | MS.gene97270:CDS | 30.0% | |
| ATTCAGTCAAATTTGGATTG+CGG | - | chr2.1:39745124-39745143 | None:intergenic | 30.0% | |
| CAAAAGGACTCAACATTATA+TGG | + | chr2.1:39745230-39745249 | MS.gene97270:CDS | 30.0% | |
| CACATGCTAAGAATTATTTG+AGG | + | chr2.1:39743707-39743726 | MS.gene97270:intron | 30.0% | |
| CACTCTTTCAATGACTAAAA+TGG | + | chr2.1:39744068-39744087 | MS.gene97270:intron | 30.0% | |
| GAGTACTATTCAGTCAAATT+TGG | - | chr2.1:39745131-39745150 | None:intergenic | 30.0% | |
| TGATTAGATAGAGTTCTACA+TGG | - | chr2.1:39745357-39745376 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr2.1:39746136-39746155 | MS.gene97270:intron | 30.0% | |
| TGTCTTTCACAAATATCAAG+AGG | - | chr2.1:39745429-39745448 | None:intergenic | 30.0% | |
| TTAAGGGTTAAATACGTGTT+TGG | + | chr2.1:39745603-39745622 | MS.gene97270:intron | 30.0% | |
| TTATGTGCACACATTATGTT+AGG | + | chr2.1:39745519-39745538 | MS.gene97270:intron | 30.0% | |
| ! | AAAAATTCCATCTTCGCTTT+TGG | - | chr2.1:39745954-39745973 | None:intergenic | 30.0% |
| ! | ATGGTTGTTTGTCAGTTTTA+TGG | + | chr2.1:39744087-39744106 | MS.gene97270:intron | 30.0% |
| ! | CATATAATGTTGAGTCCTTT+TGG | - | chr2.1:39745232-39745251 | None:intergenic | 30.0% |
| ! | GTCTTTATCATTCGTCATTT+TGG | + | chr2.1:39743901-39743920 | MS.gene97270:intron | 30.0% |
| ! | TATGAGTTTGCTTAAAAGGA+TGG | + | chr2.1:39745927-39745946 | MS.gene97270:intron | 30.0% |
| ! | TTATCGGGAAATAGTCATTT+TGG | + | chr2.1:39743809-39743828 | MS.gene97270:intron | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | + | chr2.1:39746239-39746258 | MS.gene97270:intron | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | + | chr2.1:39746240-39746259 | MS.gene97270:intron | 30.0% |
| !! | TTGATAAAGTAATGGGTCTT+GGG | - | chr2.1:39744370-39744389 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTTTGTGGTGTCC+GGG | + | chr2.1:39745030-39745049 | MS.gene97270:intron | 30.0% |
| !!! | TGACTCGAGAGTTTTATTAT+CGG | + | chr2.1:39743793-39743812 | MS.gene97270:intron | 30.0% |
| AAGTGCGAGATAAAACCAAA+AGG | + | chr2.1:39745214-39745233 | MS.gene97270:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr2.1:39746275-39746294 | MS.gene97270:intron | 35.0% | |
| ATGAAGTATGGAGTGGAAAA+TGG | + | chr2.1:39746667-39746686 | MS.gene97270:CDS | 35.0% | |
| ATGGCTAAAGTTGGGAAAAA+GGG | + | chr2.1:39746522-39746541 | MS.gene97270:CDS | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr2.1:39746092-39746111 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr2.1:39746093-39746112 | None:intergenic | 35.0% | |
| GACAATGCATAATGTATGCA+AGG | - | chr2.1:39745070-39745089 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr2.1:39746106-39746125 | None:intergenic | 35.0% | |
| ! | AAGCTTGAAATTGAAGTGTC+AGG | + | chr2.1:39746615-39746634 | MS.gene97270:CDS | 35.0% |
| ! | GAGGAAAAGGAACTTCATTT+TGG | + | chr2.1:39746639-39746658 | MS.gene97270:CDS | 35.0% |
| ! | TCTATTATTTTCCAGTAGCG+AGG | - | chr2.1:39745265-39745284 | None:intergenic | 35.0% |
| !! | CTTGATAAAGTAATGGGTCT+TGG | - | chr2.1:39744371-39744390 | None:intergenic | 35.0% |
| !!! | GACTCGAGAGTTTTATTATC+GGG | + | chr2.1:39743794-39743813 | MS.gene97270:intron | 35.0% |
| !!! | TCTTTTGGAATGGTTGTCTT+AGG | - | chr2.1:39746588-39746607 | None:intergenic | 35.0% |
| AAAACCGCGAAATTGTTACG+CGG | + | chr2.1:39744870-39744889 | MS.gene97270:intron | 40.0% | |
| ACCCTCCTGTGTCTAATAAA+TGG | + | chr2.1:39743515-39743534 | MS.gene97270:intron | 40.0% | |
| CCCATTTATTAGACACAGGA+GGG | - | chr2.1:39743519-39743538 | None:intergenic | 40.0% | |
| CCCTCCTGTGTCTAATAAAT+GGG | + | chr2.1:39743516-39743535 | MS.gene97270:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr2.1:39746090-39746109 | MS.gene97270:intron | 40.0% | |
| CTTGCCCATTTATTAGACAC+AGG | - | chr2.1:39743523-39743542 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr2.1:39746276-39746295 | MS.gene97270:intron | 40.0% | |
| GAAGTTAAGCCAGAAGGTTT+CGG | + | chr2.1:39746471-39746490 | MS.gene97270:CDS | 40.0% | |
| GACAACCATTCCAAAAGATG+AGG | + | chr2.1:39746590-39746609 | MS.gene97270:CDS | 40.0% | |
| GATGGCTAAAGTTGGGAAAA+AGG | + | chr2.1:39746521-39746540 | MS.gene97270:CDS | 40.0% | |
| GCTTTCTCGTGGTAAAAGTT+TGG | - | chr2.1:39744667-39744686 | None:intergenic | 40.0% | |
| GGATTGTATGAAGTATGGAG+TGG | + | chr2.1:39746660-39746679 | MS.gene97270:CDS | 40.0% | |
| GTATGGAGTGGAAAATGGAA+AGG | + | chr2.1:39746672-39746691 | MS.gene97270:CDS | 40.0% | |
| GTCAGTTGAGTTAGAGTTTG+TGG | - | chr2.1:39744849-39744868 | None:intergenic | 40.0% | |
| GTGCACACATTATGTTAGGA+TGG | + | chr2.1:39745523-39745542 | MS.gene97270:intron | 40.0% | |
| TGCATAATGTATGCAAGGTC+CGG | - | chr2.1:39745065-39745084 | None:intergenic | 40.0% | |
| ! | GATATACTTGTGCAGGTTGA+TGG | + | chr2.1:39745190-39745209 | MS.gene97270:intron | 40.0% |
| ! | TAAGCTTAGCTCAGTTGGTA+AGG | - | chr2.1:39745092-39745111 | None:intergenic | 40.0% |
| ! | TCAAGCTTAGCCTCATCTTT+TGG | - | chr2.1:39746603-39746622 | None:intergenic | 40.0% |
| ! | TGAAATTGAAGTGTCAGGTG+AGG | + | chr2.1:39746620-39746639 | MS.gene97270:CDS | 40.0% |
| !! | ATATAAATGAAGGTGCTGCG+TGG | - | chr2.1:39744923-39744942 | None:intergenic | 40.0% |
| !! | CTTAGCCTCATCTTTTGGAA+TGG | - | chr2.1:39746598-39746617 | None:intergenic | 40.0% |
| !! | TACTGGTGATGGCTAAAGTT+GGG | + | chr2.1:39746514-39746533 | MS.gene97270:CDS | 40.0% |
| !! | TATAAATGAAGGTGCTGCGT+GGG | - | chr2.1:39744922-39744941 | None:intergenic | 40.0% |
| !! | TTCATGTGTTAGCTTTCTCG+TGG | - | chr2.1:39744678-39744697 | None:intergenic | 40.0% |
| AAACCGCGAAATTGTTACGC+GGG | + | chr2.1:39744871-39744890 | MS.gene97270:intron | 45.0% | |
| CAGAGCTGACACAAGTTTCA+TGG | + | chr2.1:39746385-39746404 | MS.gene97270:CDS | 45.0% | |
| CATAATGTATGCAAGGTCCG+GGG | - | chr2.1:39745063-39745082 | None:intergenic | 45.0% | |
| GACACAAGTTTCATGGTTGG+AGG | + | chr2.1:39746392-39746411 | MS.gene97270:CDS | 45.0% | |
| GCATAATGTATGCAAGGTCC+GGG | - | chr2.1:39745064-39745083 | None:intergenic | 45.0% | |
| GCCCATTTATTAGACACAGG+AGG | - | chr2.1:39743520-39743539 | None:intergenic | 45.0% | |
| GCTGACACAAGTTTCATGGT+TGG | + | chr2.1:39746389-39746408 | MS.gene97270:CDS | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr2.1:39746088-39746107 | None:intergenic | 45.0% | |
| GTCTGATGAGGCTTTCTGAA+AGG | - | chr2.1:39743490-39743509 | None:intergenic | 45.0% | |
| TAAGCCAGAAGGTTTCGGTT+GGG | + | chr2.1:39746476-39746495 | MS.gene97270:CDS | 45.0% | |
| TGGAGTGGAAAATGGAAAGG+AGG | + | chr2.1:39746675-39746694 | MS.gene97270:CDS | 45.0% | |
| TTAAGCCAGAAGGTTTCGGT+TGG | + | chr2.1:39746475-39746494 | MS.gene97270:CDS | 45.0% | |
| ! | TGAAGTGTCAGGTGAGGAAA+AGG | + | chr2.1:39746626-39746645 | MS.gene97270:CDS | 45.0% |
| !! | ATAAATGAAGGTGCTGCGTG+GGG | - | chr2.1:39744921-39744940 | None:intergenic | 45.0% |
| !! | GTACTGGTGATGGCTAAAGT+TGG | + | chr2.1:39746513-39746532 | MS.gene97270:CDS | 45.0% |
| !! | GTTTCATGGTTGGAGGTATC+TGG | + | chr2.1:39746399-39746418 | MS.gene97270:CDS | 45.0% |
| !! | TTGTTAATTATATAAATAAA+TGG | - | chr2.1:39745163-39745182 | None:intergenic | 5.0% |
| !! | TTTAGAAAATAAAAAATAAA+AGG | - | chr2.1:39744174-39744193 | None:intergenic | 5.0% |
| !! | TTTATTTATATAATTAACAA+CGG | + | chr2.1:39745163-39745182 | MS.gene97270:intron | 5.0% |
| !!! | AAATATGAATTTTATATTTT+TGG | - | chr2.1:39745860-39745879 | None:intergenic | 5.0% |
| AAATACTACTCCCTCCGTCC+CGG | - | chr2.1:39746297-39746316 | None:intergenic | 50.0% | |
| AAGCCAGAAGGTTTCGGTTG+GGG | + | chr2.1:39746477-39746496 | MS.gene97270:CDS | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr2.1:39746280-39746299 | MS.gene97270:intron | 50.0% | |
| CAGAAAGCCTCATCAGACAG+CGG | + | chr2.1:39743492-39743511 | MS.gene97270:CDS | 50.0% | |
| CATCACCAGTACATCTGTGC+TGG | - | chr2.1:39746505-39746524 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTTACG+AGG | + | chr2.1:39745094-39745113 | MS.gene97270:intron | 50.0% | |
| CCTCGTAAGCTTAGCTCAGT+TGG | - | chr2.1:39745097-39745116 | None:intergenic | 50.0% | |
| GAGGTGGAAGTTAAGCCAGA+AGG | + | chr2.1:39746465-39746484 | MS.gene97270:CDS | 50.0% | |
| GCGTCATGAATGGGGTTTGA+GGG | + | chr2.1:39744893-39744912 | MS.gene97270:intron | 50.0% | |
| GGATGGACCAAAAGCGAAGA+TGG | + | chr2.1:39745944-39745963 | MS.gene97270:intron | 50.0% | |
| GTCTAATACTACCTCCGTCC+CGG | + | chr2.1:39746071-39746090 | MS.gene97270:intron | 50.0% | |
| ! | CAGCACAGATGTACTGGTGA+TGG | + | chr2.1:39746503-39746522 | MS.gene97270:CDS | 50.0% |
| ! | GAGGTAGTGCATCTAGAGTG+TGG | + | chr2.1:39746558-39746577 | MS.gene97270:CDS | 50.0% |
| ACGCCCGCGTAACAATTTCG+CGG | - | chr2.1:39744877-39744896 | None:intergenic | 55.0% | |
| CGGAGGCGATATACTTGTGC+AGG | + | chr2.1:39745183-39745202 | MS.gene97270:intron | 55.0% | |
| GGCGTCATGAATGGGGTTTG+AGG | + | chr2.1:39744892-39744911 | MS.gene97270:intron | 55.0% | |
| GGGAACCAGCACAGATGTAC+TGG | + | chr2.1:39746497-39746516 | MS.gene97270:CDS | 55.0% | |
| GGGGAAATGATCCTCGCTAC+TGG | + | chr2.1:39745251-39745270 | MS.gene97270:CDS | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr2.1:39746085-39746104 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr2.1:39746284-39746303 | MS.gene97270:intron | 55.0% | |
| GTTACGCGGGCGTCATGAAT+GGG | + | chr2.1:39744884-39744903 | MS.gene97270:intron | 55.0% | |
| GTTCCCCAACCGAAACCTTC+TGG | - | chr2.1:39746483-39746502 | None:intergenic | 55.0% | |
| TGTTACGCGGGCGTCATGAA+TGG | + | chr2.1:39744883-39744902 | MS.gene97270:intron | 55.0% | |
| TTACGCGGGCGTCATGAATG+GGG | + | chr2.1:39744885-39744904 | MS.gene97270:intron | 55.0% | |
| AAGGTCCGGGGTTCGAATCC+CGG | - | chr2.1:39745051-39745070 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr2.1:39746283-39746302 | MS.gene97270:intron | 60.0% | |
| GGAGGGTCCGCTGTCTGATG+AGG | - | chr2.1:39743502-39743521 | None:intergenic | 65.0% | |
| GGTGTCCGGGATTCGAACCC+CGG | + | chr2.1:39745043-39745062 | MS.gene97270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 39743484 | 39746737 | 39743484 | ID=MS.gene97270 |
| chr2.1 | mRNA | 39743484 | 39746737 | 39743484 | ID=MS.gene97270.t1;Parent=MS.gene97270 |
| chr2.1 | exon | 39743484 | 39743522 | 39743484 | ID=MS.gene97270.t1.exon1;Parent=MS.gene97270.t1 |
| chr2.1 | CDS | 39743484 | 39743522 | 39743484 | ID=cds.MS.gene97270.t1;Parent=MS.gene97270.t1 |
| chr2.1 | exon | 39745205 | 39745284 | 39745205 | ID=MS.gene97270.t1.exon2;Parent=MS.gene97270.t1 |
| chr2.1 | CDS | 39745205 | 39745284 | 39745205 | ID=cds.MS.gene97270.t1;Parent=MS.gene97270.t1 |
| chr2.1 | exon | 39746377 | 39746737 | 39746377 | ID=MS.gene97270.t1.exon3;Parent=MS.gene97270.t1 |
| chr2.1 | CDS | 39746377 | 39746737 | 39746377 | ID=cds.MS.gene97270.t1;Parent=MS.gene97270.t1 |
| Gene Sequence |
| Protein sequence |
