Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29549.t1 | XP_003616506.2 | 99.7 | 327 | 1 | 0 | 1 | 327 | 1 | 327 | 9.60E-182 | 646 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29549.t1 | Q54MZ4 | 41.1 | 299 | 166 | 4 | 25 | 321 | 133 | 423 | 9.7e-58 | 225.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29549.t1 | G7K211 | 99.7 | 327 | 1 | 0 | 1 | 327 | 1 | 327 | 6.9e-182 | 646.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057199 | MS.gene29549 | 0.806268 | 8.93E-50 | -1.69E-46 |
| MS.gene058503 | MS.gene29549 | 0.916212 | 2.34E-85 | -1.69E-46 |
| MS.gene058505 | MS.gene29549 | 0.874706 | 5.48E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29549 | MS.gene66338 | PPI |
| MS.gene064043 | MS.gene29549 | PPI |
| MS.gene29549 | MS.gene98135 | PPI |
| MS.gene29549 | MS.gene95300 | PPI |
| MS.gene37414 | MS.gene29549 | PPI |
| MS.gene29549 | MS.gene064047 | PPI |
| MS.gene29549 | MS.gene074631 | PPI |
| MS.gene75068 | MS.gene29549 | PPI |
| MS.gene29549 | MS.gene015005 | PPI |
| MS.gene29549 | MS.gene59586 | PPI |
| MS.gene064041 | MS.gene29549 | PPI |
| MS.gene79746 | MS.gene29549 | PPI |
| MS.gene29549 | MS.gene034290 | PPI |
| MS.gene29549 | MS.gene046369 | PPI |
| MS.gene29549 | MS.gene052972 | PPI |
| MS.gene030289 | MS.gene29549 | PPI |
| MS.gene29549 | MS.gene32803 | PPI |
| MS.gene29549 | MS.gene066511 | PPI |
| MS.gene29549 | MS.gene074632 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29549.t1 | MTR_5g081150 | 99.694 | 327 | 1 | 0 | 1 | 327 | 1 | 327 | 0.0 | 669 |
| MS.gene29549.t1 | MTR_5g081150 | 96.887 | 257 | 8 | 0 | 1 | 257 | 1 | 257 | 0.0 | 508 |
| MS.gene29549.t1 | MTR_5g081150 | 99.597 | 248 | 1 | 0 | 1 | 248 | 1 | 248 | 0.0 | 507 |
| MS.gene29549.t1 | MTR_7g064980 | 70.625 | 320 | 87 | 3 | 7 | 323 | 1 | 316 | 4.83e-162 | 455 |
| MS.gene29549.t1 | MTR_7g064980 | 28.571 | 203 | 121 | 6 | 33 | 227 | 133 | 319 | 2.56e-13 | 70.1 |
| MS.gene29549.t1 | MTR_5g009500 | 38.318 | 321 | 170 | 7 | 22 | 321 | 25 | 338 | 7.76e-63 | 203 |
| MS.gene29549.t1 | MTR_8g027975 | 34.969 | 326 | 188 | 6 | 16 | 321 | 32 | 353 | 1.12e-60 | 198 |
| MS.gene29549.t1 | MTR_6g091800 | 33.333 | 303 | 174 | 5 | 33 | 321 | 18 | 306 | 1.54e-48 | 165 |
| MS.gene29549.t1 | MTR_6g091800 | 31.472 | 197 | 119 | 5 | 140 | 323 | 18 | 211 | 8.86e-19 | 85.9 |
| MS.gene29549.t1 | MTR_6g091800 | 28.070 | 228 | 139 | 7 | 16 | 229 | 97 | 313 | 9.53e-17 | 80.1 |
| MS.gene29549.t1 | MTR_3g104600 | 32.698 | 315 | 171 | 7 | 31 | 321 | 32 | 329 | 1.02e-47 | 164 |
| MS.gene29549.t1 | MTR_3g104600 | 30.841 | 214 | 129 | 3 | 129 | 323 | 19 | 232 | 9.21e-24 | 100 |
| MS.gene29549.t1 | MTR_6g091800 | 30.887 | 327 | 174 | 5 | 33 | 321 | 18 | 330 | 1.29e-45 | 158 |
| MS.gene29549.t1 | MTR_4g119770 | 31.325 | 332 | 196 | 9 | 22 | 325 | 2 | 329 | 1.11e-44 | 155 |
| MS.gene29549.t1 | MTR_3g098460 | 33.447 | 293 | 173 | 9 | 34 | 321 | 205 | 480 | 4.58e-44 | 157 |
| MS.gene29549.t1 | MTR_3g098460 | 29.958 | 237 | 141 | 7 | 92 | 318 | 157 | 378 | 6.52e-23 | 99.4 |
| MS.gene29549.t1 | MTR_3g098460 | 32.500 | 200 | 116 | 5 | 27 | 220 | 292 | 478 | 1.51e-19 | 89.4 |
| MS.gene29549.t1 | MTR_7g068340 | 33.096 | 281 | 164 | 7 | 45 | 322 | 98 | 357 | 6.00e-43 | 152 |
| MS.gene29549.t1 | MTR_7g068340 | 28.492 | 179 | 110 | 6 | 153 | 323 | 99 | 267 | 6.10e-11 | 63.2 |
| MS.gene29549.t1 | MTR_7g084400 | 33.557 | 298 | 163 | 9 | 34 | 321 | 213 | 485 | 2.24e-42 | 153 |
| MS.gene29549.t1 | MTR_7g084400 | 32.323 | 198 | 114 | 5 | 27 | 220 | 302 | 483 | 1.58e-22 | 98.2 |
| MS.gene29549.t1 | MTR_7g084400 | 33.152 | 184 | 111 | 4 | 140 | 318 | 212 | 388 | 1.40e-21 | 95.5 |
| MS.gene29549.t1 | MTR_3g107510 | 32.803 | 314 | 186 | 9 | 12 | 323 | 105 | 395 | 6.11e-42 | 150 |
| MS.gene29549.t1 | MTR_3g107510 | 29.224 | 219 | 137 | 6 | 15 | 229 | 196 | 400 | 1.20e-21 | 94.7 |
| MS.gene29549.t1 | MTR_3g107510 | 29.412 | 187 | 113 | 5 | 144 | 324 | 125 | 298 | 4.79e-17 | 81.6 |
| MS.gene29549.t1 | MTR_2g436930 | 30.915 | 317 | 189 | 9 | 36 | 326 | 17 | 329 | 1.84e-41 | 147 |
| MS.gene29549.t1 | MTR_2g436930 | 28.641 | 206 | 124 | 5 | 35 | 225 | 129 | 326 | 1.16e-16 | 79.7 |
| MS.gene29549.t1 | MTR_1g012030 | 33.220 | 295 | 175 | 9 | 30 | 321 | 135 | 410 | 3.80e-41 | 148 |
| MS.gene29549.t1 | MTR_1g012030 | 29.412 | 187 | 121 | 4 | 140 | 324 | 138 | 315 | 1.33e-19 | 89.4 |
| MS.gene29549.t1 | MTR_1g012030 | 28.708 | 209 | 131 | 6 | 15 | 219 | 213 | 407 | 9.92e-19 | 86.7 |
| MS.gene29549.t1 | MTR_8g096050 | 32.423 | 293 | 176 | 7 | 34 | 321 | 227 | 502 | 1.27e-40 | 149 |
| MS.gene29549.t1 | MTR_8g096050 | 34.239 | 184 | 111 | 5 | 140 | 320 | 226 | 402 | 4.79e-22 | 96.7 |
| MS.gene29549.t1 | MTR_8g096050 | 33.000 | 200 | 115 | 6 | 27 | 220 | 314 | 500 | 7.67e-21 | 93.2 |
| MS.gene29549.t1 | MTR_6g091800 | 34.836 | 244 | 131 | 5 | 33 | 262 | 18 | 247 | 1.47e-40 | 143 |
| MS.gene29549.t1 | MTR_6g091800 | 31.472 | 197 | 119 | 5 | 140 | 323 | 18 | 211 | 6.76e-19 | 85.5 |
| MS.gene29549.t1 | MTR_6g091800 | 34.836 | 244 | 131 | 5 | 33 | 262 | 18 | 247 | 2.26e-40 | 142 |
| MS.gene29549.t1 | MTR_6g091800 | 31.472 | 197 | 119 | 5 | 140 | 323 | 18 | 211 | 5.49e-19 | 85.5 |
| MS.gene29549.t1 | MTR_6g091800 | 30.097 | 309 | 164 | 5 | 33 | 303 | 18 | 312 | 5.47e-40 | 143 |
| MS.gene29549.t1 | MTR_4g114320 | 30.847 | 295 | 186 | 5 | 30 | 323 | 119 | 396 | 3.07e-39 | 143 |
| MS.gene29549.t1 | MTR_4g114320 | 29.302 | 215 | 131 | 7 | 19 | 226 | 198 | 398 | 3.85e-19 | 87.8 |
| MS.gene29549.t1 | MTR_6g091800 | 31.716 | 268 | 131 | 5 | 33 | 262 | 18 | 271 | 1.29e-37 | 136 |
| MS.gene29549.t1 | MTR_6g091800 | 31.716 | 268 | 131 | 5 | 33 | 262 | 18 | 271 | 2.86e-37 | 135 |
| MS.gene29549.t1 | MTR_6g034145 | 31.373 | 255 | 152 | 4 | 81 | 321 | 7 | 252 | 3.06e-36 | 131 |
| MS.gene29549.t1 | MTR_6g034145 | 27.632 | 228 | 140 | 7 | 16 | 229 | 43 | 259 | 3.12e-15 | 74.7 |
| MS.gene29549.t1 | MTR_6g034145 | 30.323 | 155 | 96 | 3 | 180 | 323 | 4 | 157 | 3.47e-14 | 71.6 |
| MS.gene29549.t1 | MTR_4g016730 | 32.500 | 280 | 164 | 7 | 45 | 322 | 100 | 356 | 2.02e-35 | 132 |
| MS.gene29549.t1 | MTR_6g092210 | 31.325 | 249 | 154 | 4 | 81 | 321 | 7 | 246 | 2.06e-35 | 129 |
| MS.gene29549.t1 | MTR_6g092210 | 27.354 | 223 | 141 | 7 | 16 | 229 | 43 | 253 | 3.31e-14 | 71.6 |
| MS.gene29549.t1 | MTR_6g092210 | 28.859 | 149 | 100 | 3 | 180 | 323 | 4 | 151 | 1.90e-13 | 69.7 |
| MS.gene29549.t1 | MTR_3g074490 | 30.476 | 315 | 175 | 7 | 29 | 321 | 111 | 403 | 5.19e-34 | 129 |
| MS.gene29549.t1 | MTR_3g104500 | 30.068 | 296 | 192 | 7 | 33 | 320 | 33 | 321 | 3.30e-33 | 125 |
| MS.gene29549.t1 | MTR_3g104500 | 24.771 | 218 | 141 | 6 | 125 | 323 | 14 | 227 | 1.30e-12 | 67.8 |
| MS.gene29549.t1 | MTR_4g119770 | 30.153 | 262 | 160 | 6 | 22 | 263 | 2 | 260 | 4.40e-31 | 118 |
| MS.gene29549.t1 | MTR_4g119770 | 30.000 | 200 | 116 | 5 | 139 | 318 | 12 | 207 | 1.14e-20 | 90.1 |
| MS.gene29549.t1 | MTR_8g090210 | 27.707 | 314 | 187 | 6 | 28 | 321 | 104 | 397 | 7.46e-30 | 117 |
| MS.gene29549.t1 | MTR_7g109135 | 30.640 | 297 | 181 | 9 | 36 | 321 | 24 | 306 | 7.68e-29 | 113 |
| MS.gene29549.t1 | MTR_7g109135 | 35.567 | 194 | 115 | 6 | 138 | 323 | 17 | 208 | 9.00e-20 | 88.6 |
| MS.gene29549.t1 | MTR_7g109135 | 31.351 | 185 | 116 | 6 | 48 | 229 | 137 | 313 | 2.12e-15 | 76.3 |
| MS.gene29549.t1 | MTR_6g091800 | 36.872 | 179 | 87 | 4 | 33 | 197 | 18 | 184 | 7.50e-28 | 107 |
| MS.gene29549.t1 | MTR_6g091800 | 31.765 | 170 | 100 | 5 | 140 | 296 | 18 | 184 | 4.56e-14 | 70.1 |
| MS.gene29549.t1 | MTR_4g005330 | 25.333 | 300 | 198 | 6 | 35 | 321 | 1 | 287 | 3.32e-27 | 108 |
| MS.gene29549.t1 | MTR_4g005330 | 25.000 | 304 | 202 | 6 | 31 | 321 | 63 | 353 | 4.71e-27 | 109 |
| MS.gene29549.t1 | MTR_2g436930 | 30.705 | 241 | 146 | 7 | 103 | 326 | 3 | 239 | 8.30e-27 | 106 |
| MS.gene29549.t1 | MTR_2g436930 | 28.641 | 206 | 124 | 5 | 35 | 225 | 39 | 236 | 5.77e-17 | 79.3 |
| MS.gene29549.t1 | MTR_5g055410 | 32.566 | 304 | 180 | 10 | 29 | 321 | 16 | 305 | 3.91e-26 | 106 |
| MS.gene29549.t1 | MTR_5g055410 | 34.118 | 170 | 107 | 4 | 157 | 323 | 37 | 204 | 3.52e-17 | 81.6 |
| MS.gene29549.t1 | MTR_3g028590 | 26.144 | 306 | 209 | 7 | 24 | 321 | 83 | 379 | 2.74e-25 | 105 |
| MS.gene29549.t1 | MTR_3g028590 | 26.144 | 306 | 209 | 7 | 24 | 321 | 87 | 383 | 3.43e-25 | 104 |
| MS.gene29549.t1 | MTR_6g091800 | 32.512 | 203 | 87 | 4 | 33 | 197 | 18 | 208 | 5.48e-25 | 100 |
| MS.gene29549.t1 | MTR_6g091800 | 34.959 | 123 | 75 | 3 | 140 | 259 | 18 | 138 | 5.15e-11 | 62.0 |
| MS.gene29549.t1 | MTR_7g109135 | 29.592 | 294 | 181 | 9 | 36 | 321 | 24 | 299 | 1.06e-24 | 102 |
| MS.gene29549.t1 | MTR_7g109135 | 33.679 | 193 | 113 | 7 | 138 | 323 | 17 | 201 | 3.96e-16 | 78.2 |
| MS.gene29549.t1 | MTR_7g109135 | 31.395 | 172 | 107 | 6 | 61 | 229 | 143 | 306 | 6.19e-14 | 71.6 |
| MS.gene29549.t1 | MTR_1g087840 | 29.310 | 290 | 182 | 8 | 46 | 325 | 31 | 307 | 1.09e-24 | 102 |
| MS.gene29549.t1 | MTR_1g087840 | 30.481 | 187 | 115 | 5 | 48 | 229 | 134 | 310 | 1.27e-16 | 79.3 |
| MS.gene29549.t1 | MTR_8g107270 | 24.561 | 285 | 199 | 6 | 33 | 309 | 17 | 293 | 1.59e-24 | 101 |
| MS.gene29549.t1 | MTR_8g107270 | 24.870 | 193 | 133 | 3 | 141 | 321 | 18 | 210 | 6.16e-11 | 62.8 |
| MS.gene29549.t1 | MTR_8g036880 | 25.733 | 307 | 210 | 7 | 24 | 321 | 92 | 389 | 6.01e-24 | 101 |
| MS.gene29549.t1 | MTR_4g078545 | 26.774 | 310 | 207 | 8 | 23 | 321 | 61 | 361 | 1.26e-23 | 100 |
| MS.gene29549.t1 | MTR_2g098070 | 27.097 | 310 | 206 | 8 | 23 | 321 | 52 | 352 | 1.48e-23 | 99.8 |
| MS.gene29549.t1 | MTR_8g098240 | 27.425 | 299 | 197 | 7 | 24 | 322 | 310 | 588 | 2.73e-23 | 100 |
| MS.gene29549.t1 | MTR_7g084400 | 33.333 | 222 | 124 | 8 | 34 | 247 | 207 | 412 | 2.33e-22 | 97.1 |
| MS.gene29549.t1 | MTR_7g084400 | 34.239 | 184 | 109 | 5 | 140 | 318 | 206 | 382 | 9.50e-22 | 95.5 |
| MS.gene29549.t1 | MTR_6g091910 | 31.100 | 209 | 121 | 6 | 33 | 229 | 18 | 215 | 4.20e-22 | 92.8 |
| MS.gene29549.t1 | MTR_6g091910 | 29.534 | 193 | 123 | 3 | 140 | 321 | 18 | 208 | 2.25e-19 | 85.5 |
| MS.gene29549.t1 | MTR_4g057850 | 26.207 | 290 | 182 | 10 | 35 | 311 | 23 | 293 | 2.78e-21 | 92.8 |
| MS.gene29549.t1 | MTR_4g057850 | 32.338 | 201 | 120 | 7 | 27 | 218 | 106 | 299 | 3.92e-13 | 69.3 |
| MS.gene29549.t1 | MTR_7g109135 | 31.405 | 242 | 141 | 9 | 91 | 321 | 1 | 228 | 4.01e-21 | 90.9 |
| MS.gene29549.t1 | MTR_7g109135 | 31.351 | 185 | 116 | 6 | 48 | 229 | 59 | 235 | 2.17e-15 | 74.7 |
| MS.gene29549.t1 | MTR_7g109135 | 34.351 | 131 | 83 | 3 | 193 | 322 | 1 | 129 | 6.28e-11 | 62.0 |
| MS.gene29549.t1 | MTR_5g073040 | 26.351 | 296 | 194 | 9 | 34 | 323 | 39 | 316 | 5.01e-21 | 92.0 |
| MS.gene29549.t1 | MTR_5g073040 | 30.811 | 185 | 119 | 3 | 142 | 325 | 40 | 216 | 1.68e-19 | 87.8 |
| MS.gene29549.t1 | MTR_5g073040 | 33.537 | 164 | 100 | 3 | 75 | 233 | 167 | 326 | 2.37e-14 | 73.2 |
| MS.gene29549.t1 | MTR_1g090330 | 23.203 | 306 | 205 | 5 | 26 | 318 | 6 | 294 | 7.50e-21 | 91.3 |
| MS.gene29549.t1 | MTR_7g117030 | 28.736 | 261 | 160 | 8 | 81 | 323 | 85 | 337 | 1.21e-20 | 91.3 |
| MS.gene29549.t1 | MTR_7g109135 | 34.091 | 176 | 101 | 7 | 155 | 321 | 38 | 207 | 7.55e-20 | 87.0 |
| MS.gene29549.t1 | MTR_7g109135 | 31.351 | 185 | 116 | 6 | 48 | 229 | 38 | 214 | 1.12e-15 | 75.1 |
| MS.gene29549.t1 | MTR_8g076760 | 30.279 | 251 | 150 | 7 | 86 | 321 | 65 | 305 | 6.37e-19 | 85.9 |
| MS.gene29549.t1 | MTR_8g076760 | 32.571 | 175 | 112 | 3 | 156 | 326 | 29 | 201 | 8.54e-19 | 85.9 |
| MS.gene29549.t1 | MTR_8g076760 | 26.923 | 208 | 133 | 7 | 33 | 228 | 112 | 312 | 8.74e-12 | 65.5 |
| MS.gene29549.t1 | MTR_6g034515 | 26.950 | 282 | 179 | 6 | 47 | 321 | 80 | 341 | 1.29e-18 | 85.9 |
| MS.gene29549.t1 | MTR_3g090820 | 26.056 | 284 | 180 | 5 | 62 | 321 | 110 | 387 | 1.67e-18 | 85.9 |
| MS.gene29549.t1 | MTR_8g066975 | 25.243 | 309 | 203 | 7 | 28 | 321 | 1 | 296 | 3.75e-18 | 83.6 |
| MS.gene29549.t1 | MTR_8g066975 | 32.178 | 202 | 122 | 5 | 132 | 322 | 3 | 200 | 4.09e-18 | 83.6 |
| MS.gene29549.t1 | MTR_5g030530 | 28.713 | 202 | 129 | 5 | 132 | 322 | 3 | 200 | 5.65e-18 | 83.2 |
| MS.gene29549.t1 | MTR_5g030530 | 24.092 | 303 | 203 | 7 | 33 | 321 | 7 | 296 | 9.61e-15 | 73.9 |
| MS.gene29549.t1 | MTR_1g097890 | 24.828 | 290 | 182 | 6 | 35 | 323 | 52 | 306 | 1.02e-17 | 82.8 |
| MS.gene29549.t1 | MTR_1g097890 | 29.592 | 196 | 120 | 4 | 25 | 219 | 123 | 301 | 3.50e-16 | 78.2 |
| MS.gene29549.t1 | MTR_1g097890 | 27.189 | 217 | 115 | 7 | 114 | 319 | 23 | 207 | 4.77e-12 | 66.2 |
| MS.gene29549.t1 | MTR_8g092080 | 27.974 | 311 | 179 | 12 | 19 | 323 | 36 | 307 | 3.86e-17 | 81.3 |
| MS.gene29549.t1 | MTR_8g092080 | 28.713 | 202 | 128 | 4 | 25 | 226 | 124 | 309 | 6.11e-16 | 77.8 |
| MS.gene29549.t1 | MTR_4g012850 | 31.720 | 186 | 117 | 5 | 140 | 321 | 15 | 194 | 7.31e-17 | 80.1 |
| MS.gene29549.t1 | MTR_4g012850 | 28.365 | 208 | 137 | 4 | 21 | 227 | 101 | 297 | 2.86e-16 | 78.6 |
| MS.gene29549.t1 | MTR_4g012850 | 25.430 | 291 | 190 | 9 | 33 | 315 | 15 | 286 | 1.55e-13 | 70.5 |
| MS.gene29549.t1 | MTR_3g025800 | 24.611 | 321 | 198 | 8 | 33 | 323 | 27 | 333 | 1.05e-16 | 80.1 |
| MS.gene29549.t1 | MTR_3g025800 | 24.091 | 220 | 144 | 3 | 122 | 318 | 6 | 225 | 5.17e-12 | 66.2 |
| MS.gene29549.t1 | MTR_2g102010 | 30.968 | 155 | 101 | 2 | 49 | 202 | 125 | 274 | 2.04e-16 | 78.6 |
| MS.gene29549.t1 | MTR_2g102010 | 25.182 | 274 | 175 | 7 | 33 | 296 | 16 | 269 | 4.25e-11 | 63.2 |
| MS.gene29549.t1 | MTR_3g100570 | 24.390 | 328 | 195 | 13 | 31 | 323 | 3 | 312 | 4.41e-16 | 77.8 |
| MS.gene29549.t1 | MTR_3g100570 | 22.222 | 216 | 153 | 3 | 14 | 221 | 101 | 309 | 1.87e-11 | 64.3 |
| MS.gene29549.t1 | MTR_6g015860 | 23.552 | 259 | 171 | 5 | 82 | 323 | 60 | 308 | 7.69e-16 | 77.4 |
| MS.gene29549.t1 | MTR_6g015860 | 30.168 | 179 | 109 | 9 | 124 | 294 | 4 | 174 | 9.20e-13 | 68.6 |
| MS.gene29549.t1 | MTR_7g015870 | 28.272 | 191 | 115 | 7 | 145 | 318 | 126 | 311 | 7.77e-15 | 74.3 |
| MS.gene29549.t1 | MTR_7g015870 | 27.805 | 205 | 133 | 6 | 119 | 314 | 4 | 202 | 2.58e-12 | 67.0 |
| MS.gene29549.t1 | MTR_4g094578 | 27.717 | 184 | 117 | 4 | 139 | 315 | 27 | 201 | 1.43e-14 | 73.6 |
| MS.gene29549.t1 | MTR_4g018750 | 24.306 | 288 | 195 | 7 | 40 | 318 | 21 | 294 | 2.09e-14 | 73.2 |
| MS.gene29549.t1 | MTR_7g015870 | 27.461 | 193 | 118 | 7 | 145 | 320 | 122 | 309 | 2.88e-14 | 72.8 |
| MS.gene29549.t1 | MTR_7g015870 | 28.358 | 201 | 132 | 7 | 121 | 314 | 3 | 198 | 1.84e-12 | 67.4 |
| MS.gene29549.t1 | MTR_1g088995 | 22.105 | 285 | 205 | 5 | 38 | 320 | 37 | 306 | 1.34e-13 | 70.9 |
| MS.gene29549.t1 | MTR_7g066690 | 22.635 | 296 | 206 | 7 | 40 | 326 | 23 | 304 | 1.74e-12 | 67.4 |
| MS.gene29549.t1 | MTR_6g033280 | 27.751 | 209 | 132 | 8 | 118 | 317 | 37 | 235 | 3.07e-12 | 67.0 |
| MS.gene29549.t1 | MTR_2g032610 | 24.164 | 269 | 185 | 7 | 59 | 315 | 52 | 313 | 7.27e-12 | 65.9 |
| MS.gene29549.t1 | MTR_8g068890 | 21.148 | 331 | 204 | 11 | 31 | 323 | 3 | 314 | 3.76e-11 | 63.5 |
| MS.gene29549.t1 | MTR_5g081910 | 27.778 | 144 | 101 | 3 | 176 | 317 | 99 | 241 | 4.24e-11 | 62.8 |
| MS.gene29549.t1 | MTR_3g462140 | 24.104 | 307 | 209 | 7 | 25 | 321 | 6 | 298 | 4.68e-11 | 63.2 |
| MS.gene29549.t1 | MTR_5g081910 | 21.190 | 269 | 184 | 6 | 76 | 317 | 48 | 315 | 5.13e-11 | 63.2 |
| MS.gene29549.t1 | MTR_7g083790 | 27.586 | 174 | 113 | 5 | 148 | 317 | 90 | 254 | 5.20e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29549.t1 | AT3G55640 | 70.606 | 330 | 91 | 2 | 1 | 326 | 3 | 330 | 2.32e-170 | 476 |
| MS.gene29549.t1 | AT3G55640 | 70.606 | 330 | 91 | 2 | 1 | 326 | 3 | 330 | 2.32e-170 | 476 |
| MS.gene29549.t1 | AT3G53940 | 71.010 | 307 | 87 | 1 | 20 | 324 | 57 | 363 | 1.06e-164 | 463 |
| MS.gene29549.t1 | AT2G37890 | 64.179 | 335 | 109 | 1 | 1 | 324 | 1 | 335 | 4.60e-157 | 443 |
| MS.gene29549.t1 | AT3G55640 | 68.651 | 252 | 73 | 2 | 1 | 248 | 3 | 252 | 6.29e-122 | 351 |
| MS.gene29549.t1 | AT3G55640 | 32.353 | 204 | 120 | 6 | 127 | 318 | 26 | 223 | 1.21e-19 | 87.0 |
| MS.gene29549.t1 | AT3G55640 | 68.651 | 252 | 73 | 2 | 1 | 248 | 3 | 252 | 6.29e-122 | 351 |
| MS.gene29549.t1 | AT3G55640 | 32.353 | 204 | 120 | 6 | 127 | 318 | 26 | 223 | 1.21e-19 | 87.0 |
| MS.gene29549.t1 | AT3G53940 | 58.392 | 286 | 78 | 2 | 4 | 248 | 2 | 287 | 3.53e-113 | 330 |
| MS.gene29549.t1 | AT3G53940 | 29.358 | 218 | 133 | 4 | 113 | 318 | 50 | 258 | 1.59e-19 | 87.4 |
| MS.gene29549.t1 | AT4G01100 | 37.459 | 307 | 169 | 6 | 34 | 321 | 42 | 344 | 1.04e-60 | 198 |
| MS.gene29549.t1 | AT4G01100 | 34.031 | 191 | 116 | 4 | 136 | 318 | 37 | 225 | 4.65e-23 | 98.2 |
| MS.gene29549.t1 | AT4G01100 | 36.137 | 321 | 168 | 7 | 34 | 321 | 42 | 358 | 5.72e-58 | 191 |
| MS.gene29549.t1 | AT4G01100 | 32.683 | 205 | 114 | 5 | 136 | 318 | 37 | 239 | 3.08e-21 | 93.6 |
| MS.gene29549.t1 | AT4G01100 | 36.242 | 298 | 167 | 6 | 43 | 321 | 1 | 294 | 1.68e-56 | 185 |
| MS.gene29549.t1 | AT5G51050 | 35.974 | 303 | 165 | 9 | 26 | 321 | 215 | 495 | 6.03e-47 | 166 |
| MS.gene29549.t1 | AT4G26180 | 32.258 | 310 | 171 | 7 | 32 | 321 | 19 | 309 | 1.02e-44 | 155 |
| MS.gene29549.t1 | AT4G32400 | 35.473 | 296 | 171 | 7 | 30 | 323 | 110 | 387 | 1.43e-43 | 154 |
| MS.gene29549.t1 | AT4G32400 | 31.163 | 215 | 128 | 6 | 20 | 228 | 191 | 391 | 2.78e-21 | 94.0 |
| MS.gene29549.t1 | AT5G61810 | 32.423 | 293 | 170 | 7 | 34 | 322 | 65 | 333 | 9.11e-42 | 148 |
| MS.gene29549.t1 | AT5G61810 | 29.897 | 194 | 124 | 4 | 27 | 220 | 149 | 330 | 3.44e-19 | 87.0 |
| MS.gene29549.t1 | AT5G61810 | 32.423 | 293 | 170 | 7 | 34 | 322 | 208 | 476 | 1.22e-40 | 148 |
| MS.gene29549.t1 | AT5G61810 | 29.897 | 194 | 124 | 4 | 27 | 220 | 292 | 473 | 8.69e-19 | 87.0 |
| MS.gene29549.t1 | AT1G14560 | 32.203 | 295 | 164 | 8 | 45 | 318 | 38 | 317 | 1.37e-40 | 145 |
| MS.gene29549.t1 | AT1G14560 | 29.646 | 226 | 131 | 7 | 16 | 223 | 105 | 320 | 5.63e-21 | 92.0 |
| MS.gene29549.t1 | AT1G14560 | 30.435 | 184 | 114 | 4 | 153 | 323 | 39 | 221 | 9.83e-17 | 80.1 |
| MS.gene29549.t1 | AT5G48970 | 31.975 | 319 | 184 | 9 | 36 | 325 | 24 | 338 | 3.79e-40 | 144 |
| MS.gene29549.t1 | AT3G21390 | 31.596 | 307 | 180 | 7 | 36 | 315 | 21 | 324 | 6.37e-40 | 143 |
| MS.gene29549.t1 | AT3G21390 | 29.843 | 191 | 114 | 5 | 144 | 318 | 22 | 208 | 4.75e-19 | 86.7 |
| MS.gene29549.t1 | AT3G21390 | 31.596 | 307 | 180 | 7 | 36 | 315 | 43 | 346 | 7.02e-40 | 144 |
| MS.gene29549.t1 | AT3G21390 | 29.688 | 192 | 115 | 5 | 143 | 318 | 43 | 230 | 5.32e-19 | 87.0 |
| MS.gene29549.t1 | AT5G01500 | 32.258 | 279 | 169 | 6 | 45 | 322 | 130 | 389 | 7.60e-40 | 145 |
| MS.gene29549.t1 | AT3G51870 | 32.746 | 284 | 161 | 8 | 45 | 322 | 102 | 361 | 1.18e-39 | 144 |
| MS.gene29549.t1 | AT3G51870 | 29.609 | 179 | 108 | 6 | 153 | 323 | 103 | 271 | 1.76e-12 | 68.2 |
| MS.gene29549.t1 | AT4G26180 | 31.507 | 292 | 161 | 7 | 32 | 303 | 19 | 291 | 4.53e-39 | 140 |
| MS.gene29549.t1 | AT4G26180 | 30.729 | 192 | 117 | 5 | 140 | 318 | 20 | 208 | 1.19e-19 | 87.8 |
| MS.gene29549.t1 | AT5G64970 | 30.573 | 314 | 178 | 7 | 28 | 321 | 129 | 422 | 1.32e-35 | 134 |
| MS.gene29549.t1 | AT5G48970 | 33.333 | 264 | 152 | 7 | 82 | 325 | 8 | 267 | 3.15e-35 | 129 |
| MS.gene29549.t1 | AT5G48970 | 32.886 | 149 | 92 | 4 | 179 | 323 | 3 | 147 | 2.79e-17 | 80.9 |
| MS.gene29549.t1 | AT5G07320 | 32.404 | 287 | 160 | 10 | 43 | 322 | 218 | 477 | 3.75e-35 | 133 |
| MS.gene29549.t1 | AT5G07320 | 32.821 | 195 | 117 | 5 | 27 | 220 | 293 | 474 | 4.61e-19 | 88.2 |
| MS.gene29549.t1 | AT1G14560 | 31.429 | 280 | 156 | 8 | 45 | 303 | 38 | 302 | 1.02e-34 | 129 |
| MS.gene29549.t1 | AT1G14560 | 30.435 | 184 | 114 | 4 | 153 | 323 | 39 | 221 | 7.78e-17 | 80.1 |
| MS.gene29549.t1 | AT1G14560 | 27.536 | 207 | 123 | 6 | 16 | 204 | 105 | 302 | 2.03e-13 | 70.1 |
| MS.gene29549.t1 | AT5G64970 | 30.293 | 307 | 174 | 7 | 35 | 321 | 12 | 298 | 1.29e-34 | 128 |
| MS.gene29549.t1 | AT5G56450 | 29.245 | 318 | 201 | 9 | 20 | 321 | 16 | 325 | 7.19e-33 | 124 |
| MS.gene29549.t1 | AT5G56450 | 26.282 | 156 | 110 | 2 | 174 | 325 | 79 | 233 | 2.02e-13 | 70.5 |
| MS.gene29549.t1 | AT1G78180 | 30.422 | 332 | 184 | 7 | 10 | 321 | 111 | 415 | 3.95e-31 | 121 |
| MS.gene29549.t1 | AT1G14560 | 34.649 | 228 | 118 | 7 | 112 | 318 | 2 | 219 | 1.85e-30 | 115 |
| MS.gene29549.t1 | AT1G14560 | 29.646 | 226 | 131 | 7 | 16 | 223 | 7 | 222 | 1.28e-21 | 92.0 |
| MS.gene29549.t1 | AT5G64970 | 30.068 | 296 | 167 | 7 | 28 | 303 | 129 | 404 | 9.25e-30 | 117 |
| MS.gene29549.t1 | AT4G11440 | 29.010 | 293 | 184 | 6 | 35 | 322 | 331 | 604 | 1.58e-26 | 110 |
| MS.gene29549.t1 | AT4G11440 | 29.010 | 293 | 184 | 6 | 35 | 322 | 331 | 604 | 1.58e-26 | 110 |
| MS.gene29549.t1 | AT3G08580 | 26.846 | 298 | 200 | 7 | 33 | 321 | 83 | 371 | 1.29e-25 | 105 |
| MS.gene29549.t1 | AT3G08580 | 26.846 | 298 | 200 | 7 | 33 | 321 | 83 | 371 | 1.29e-25 | 105 |
| MS.gene29549.t1 | AT3G20240 | 24.756 | 307 | 205 | 7 | 33 | 326 | 51 | 344 | 3.61e-25 | 103 |
| MS.gene29549.t1 | AT1G07030 | 28.374 | 289 | 188 | 6 | 34 | 318 | 40 | 313 | 5.32e-25 | 103 |
| MS.gene29549.t1 | AT1G07030 | 34.756 | 164 | 94 | 4 | 75 | 231 | 168 | 325 | 2.27e-16 | 79.0 |
| MS.gene29549.t1 | AT1G07030 | 26.667 | 210 | 142 | 6 | 120 | 325 | 16 | 217 | 1.54e-14 | 73.6 |
| MS.gene29549.t1 | AT4G27940 | 29.231 | 260 | 160 | 5 | 80 | 321 | 154 | 407 | 1.04e-24 | 103 |
| MS.gene29549.t1 | AT2G30160 | 27.425 | 299 | 195 | 7 | 34 | 325 | 42 | 325 | 1.08e-24 | 102 |
| MS.gene29549.t1 | AT1G25380 | 30.742 | 283 | 172 | 8 | 46 | 317 | 33 | 302 | 3.36e-24 | 101 |
| MS.gene29549.t1 | AT1G25380 | 28.846 | 208 | 131 | 6 | 32 | 229 | 119 | 319 | 1.97e-17 | 82.4 |
| MS.gene29549.t1 | AT1G25380 | 30.742 | 283 | 172 | 8 | 46 | 317 | 33 | 302 | 3.36e-24 | 101 |
| MS.gene29549.t1 | AT1G25380 | 28.846 | 208 | 131 | 6 | 32 | 229 | 119 | 319 | 1.97e-17 | 82.4 |
| MS.gene29549.t1 | AT4G28390 | 25.879 | 313 | 213 | 8 | 19 | 321 | 66 | 369 | 3.66e-24 | 101 |
| MS.gene29549.t1 | AT4G28390 | 25.879 | 313 | 213 | 8 | 19 | 321 | 66 | 369 | 3.66e-24 | 101 |
| MS.gene29549.t1 | AT5G13490 | 25.839 | 298 | 203 | 7 | 33 | 321 | 87 | 375 | 8.55e-24 | 100 |
| MS.gene29549.t1 | AT5G13490 | 25.839 | 298 | 203 | 7 | 33 | 321 | 87 | 375 | 8.55e-24 | 100 |
| MS.gene29549.t1 | AT5G01340 | 25.083 | 303 | 195 | 8 | 20 | 311 | 8 | 289 | 2.61e-21 | 92.8 |
| MS.gene29549.t1 | AT1G34065 | 29.545 | 308 | 178 | 13 | 19 | 323 | 59 | 330 | 6.39e-21 | 92.0 |
| MS.gene29549.t1 | AT1G34065 | 29.469 | 207 | 127 | 5 | 25 | 230 | 147 | 335 | 1.25e-17 | 82.8 |
| MS.gene29549.t1 | AT1G34065 | 26.697 | 221 | 112 | 6 | 120 | 319 | 40 | 231 | 5.57e-13 | 69.3 |
| MS.gene29549.t1 | AT1G34065 | 29.545 | 308 | 178 | 13 | 19 | 323 | 66 | 337 | 7.00e-21 | 92.0 |
| MS.gene29549.t1 | AT1G34065 | 29.469 | 207 | 127 | 5 | 25 | 230 | 154 | 342 | 1.62e-17 | 82.4 |
| MS.gene29549.t1 | AT1G34065 | 26.697 | 221 | 112 | 6 | 120 | 319 | 47 | 238 | 6.13e-13 | 69.3 |
| MS.gene29549.t1 | AT2G47490 | 27.869 | 305 | 202 | 8 | 24 | 321 | 7 | 300 | 1.53e-20 | 90.5 |
| MS.gene29549.t1 | AT2G47490 | 35.057 | 174 | 102 | 5 | 157 | 323 | 33 | 202 | 2.23e-15 | 75.9 |
| MS.gene29549.t1 | AT2G47490 | 28.947 | 190 | 123 | 7 | 48 | 233 | 131 | 312 | 7.08e-15 | 74.7 |
| MS.gene29549.t1 | AT5G66380 | 28.990 | 307 | 189 | 10 | 36 | 326 | 12 | 305 | 4.35e-20 | 89.4 |
| MS.gene29549.t1 | AT5G17400 | 24.476 | 286 | 200 | 6 | 32 | 309 | 12 | 289 | 6.06e-19 | 86.3 |
| MS.gene29549.t1 | AT1G14140 | 24.138 | 319 | 206 | 8 | 16 | 320 | 3 | 299 | 3.64e-18 | 84.0 |
| MS.gene29549.t1 | AT5G46800 | 25.325 | 308 | 196 | 7 | 33 | 321 | 7 | 299 | 1.34e-17 | 82.0 |
| MS.gene29549.t1 | AT5G46800 | 29.208 | 202 | 129 | 3 | 135 | 322 | 2 | 203 | 1.70e-17 | 82.0 |
| MS.gene29549.t1 | AT5G46800 | 25.325 | 308 | 196 | 7 | 33 | 321 | 7 | 299 | 1.34e-17 | 82.0 |
| MS.gene29549.t1 | AT5G46800 | 29.208 | 202 | 129 | 3 | 135 | 322 | 2 | 203 | 1.70e-17 | 82.0 |
| MS.gene29549.t1 | AT5G46800 | 25.325 | 308 | 196 | 7 | 33 | 321 | 7 | 299 | 1.34e-17 | 82.0 |
| MS.gene29549.t1 | AT5G46800 | 29.208 | 202 | 129 | 3 | 135 | 322 | 2 | 203 | 1.70e-17 | 82.0 |
| MS.gene29549.t1 | AT1G79900 | 30.256 | 195 | 119 | 5 | 37 | 229 | 112 | 291 | 9.53e-17 | 79.7 |
| MS.gene29549.t1 | AT2G33820 | 26.282 | 312 | 198 | 11 | 26 | 320 | 10 | 306 | 3.11e-16 | 78.6 |
| MS.gene29549.t1 | AT4G39460 | 29.808 | 208 | 122 | 5 | 25 | 228 | 130 | 317 | 6.64e-16 | 77.8 |
| MS.gene29549.t1 | AT4G39460 | 27.797 | 295 | 169 | 12 | 34 | 323 | 58 | 313 | 1.05e-15 | 77.0 |
| MS.gene29549.t1 | AT4G39460 | 29.808 | 208 | 122 | 5 | 25 | 228 | 130 | 317 | 6.64e-16 | 77.8 |
| MS.gene29549.t1 | AT4G39460 | 27.797 | 295 | 169 | 12 | 34 | 323 | 58 | 313 | 1.05e-15 | 77.0 |
| MS.gene29549.t1 | AT4G39460 | 29.808 | 208 | 122 | 5 | 25 | 228 | 130 | 317 | 6.64e-16 | 77.8 |
| MS.gene29549.t1 | AT4G39460 | 27.797 | 295 | 169 | 12 | 34 | 323 | 58 | 313 | 1.05e-15 | 77.0 |
| MS.gene29549.t1 | AT5G58970 | 26.115 | 314 | 195 | 9 | 24 | 321 | 6 | 298 | 6.88e-16 | 77.4 |
| MS.gene29549.t1 | AT2G46320 | 26.848 | 257 | 156 | 7 | 81 | 318 | 109 | 352 | 2.46e-15 | 76.3 |
| MS.gene29549.t1 | AT1G74240 | 24.545 | 330 | 208 | 6 | 16 | 318 | 18 | 333 | 4.99e-15 | 75.5 |
| MS.gene29549.t1 | AT5G42130 | 24.549 | 277 | 187 | 5 | 50 | 321 | 134 | 393 | 1.40e-14 | 74.3 |
| MS.gene29549.t1 | AT3G54110 | 23.208 | 293 | 204 | 6 | 40 | 324 | 21 | 300 | 1.86e-14 | 73.2 |
| MS.gene29549.t1 | AT3G54110 | 24.868 | 189 | 133 | 2 | 33 | 221 | 117 | 296 | 3.94e-11 | 63.5 |
| MS.gene29549.t1 | AT2G46320 | 26.482 | 253 | 154 | 7 | 85 | 318 | 14 | 253 | 2.68e-14 | 72.0 |
| MS.gene29549.t1 | AT2G46320 | 26.482 | 253 | 154 | 7 | 85 | 318 | 14 | 253 | 2.68e-14 | 72.0 |
| MS.gene29549.t1 | AT2G46320 | 26.482 | 253 | 154 | 7 | 85 | 318 | 14 | 253 | 2.68e-14 | 72.0 |
| MS.gene29549.t1 | AT4G03115 | 26.425 | 193 | 121 | 4 | 33 | 221 | 70 | 245 | 4.57e-14 | 71.2 |
| MS.gene29549.t1 | AT4G03115 | 21.429 | 238 | 174 | 3 | 81 | 318 | 19 | 243 | 3.94e-12 | 65.9 |
| MS.gene29549.t1 | AT4G03115 | 26.425 | 193 | 121 | 4 | 33 | 221 | 62 | 237 | 4.61e-14 | 71.2 |
| MS.gene29549.t1 | AT4G03115 | 23.243 | 185 | 137 | 2 | 134 | 318 | 56 | 235 | 5.00e-12 | 65.5 |
| MS.gene29549.t1 | AT4G03115 | 21.725 | 313 | 224 | 6 | 9 | 318 | 12 | 306 | 5.50e-14 | 72.0 |
| MS.gene29549.t1 | AT4G03115 | 26.425 | 193 | 121 | 4 | 33 | 221 | 133 | 308 | 6.28e-14 | 71.6 |
| MS.gene29549.t1 | AT2G33820 | 25.625 | 320 | 198 | 12 | 26 | 320 | 10 | 314 | 9.46e-14 | 71.2 |
| MS.gene29549.t1 | AT4G03115 | 21.382 | 304 | 221 | 5 | 15 | 318 | 53 | 338 | 1.01e-13 | 71.6 |
| MS.gene29549.t1 | AT4G03115 | 26.425 | 193 | 121 | 4 | 33 | 221 | 165 | 340 | 1.25e-13 | 71.2 |
| MS.gene29549.t1 | AT2G22500 | 22.884 | 319 | 197 | 9 | 37 | 323 | 9 | 310 | 2.41e-13 | 70.1 |
| MS.gene29549.t1 | AT3G48850 | 27.128 | 188 | 124 | 5 | 142 | 324 | 72 | 251 | 3.09e-13 | 70.1 |
| MS.gene29549.t1 | AT5G15640 | 28.500 | 200 | 119 | 6 | 142 | 322 | 119 | 313 | 9.35e-13 | 68.6 |
| MS.gene29549.t1 | AT5G15640 | 28.500 | 200 | 119 | 6 | 142 | 322 | 126 | 320 | 9.64e-13 | 68.6 |
| MS.gene29549.t1 | AT5G09470 | 25.926 | 189 | 133 | 2 | 31 | 219 | 148 | 329 | 1.17e-12 | 68.2 |
| MS.gene29549.t1 | AT4G24570 | 21.429 | 322 | 212 | 7 | 31 | 323 | 3 | 312 | 1.18e-12 | 68.2 |
| MS.gene29549.t1 | AT2G17270 | 24.713 | 174 | 123 | 2 | 142 | 315 | 23 | 188 | 2.13e-12 | 67.4 |
| MS.gene29549.t1 | AT5G14040 | 28.736 | 174 | 111 | 5 | 148 | 317 | 90 | 254 | 2.36e-11 | 64.7 |
| MS.gene29549.t1 | AT2G33820 | 25.424 | 177 | 131 | 1 | 41 | 216 | 43 | 219 | 2.88e-11 | 62.8 |
| MS.gene29549.t1 | AT1G74240 | 24.101 | 278 | 172 | 5 | 68 | 318 | 20 | 285 | 5.43e-11 | 63.2 |
Find 83 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGCTTGTGGCAGTCTTTC+AGG | 0.123605 | 5.3:-65560540 | MS.gene29549:CDS |
| TAATCCATGAAGAGGGGTTT+AGG | 0.243240 | 5.3:-65561493 | MS.gene29549:CDS |
| GAGAAGCTGATTGCTATATT+TGG | 0.270991 | 5.3:+65560739 | None:intergenic |
| GGGATTACTCGGCCTTTATA+AGG | 0.273893 | 5.3:-65560874 | MS.gene29549:CDS |
| CTTTGAGGAAAGCGAGTATA+TGG | 0.320572 | 5.3:-65561532 | MS.gene29549:CDS |
| AATCCATGAAGAGGGGTTTA+GGG | 0.337988 | 5.3:-65561492 | MS.gene29549:CDS |
| TTTACTTACTATAGAGGTAT+TGG | 0.338091 | 5.3:-65560927 | MS.gene29549:CDS |
| ATGAAAGCTTGAGATCGTTT+TGG | 0.339773 | 5.3:-65560711 | MS.gene29549:CDS |
| CGATCTCAAGCTTTCATATA+CGG | 0.347975 | 5.3:+65560717 | None:intergenic |
| TTCAACTGTTGTTGTTAGTC+TGG | 0.353204 | 5.3:-65560559 | MS.gene29549:CDS |
| ATTCTAATGTTGCAACTTTG+AGG | 0.359407 | 5.3:-65561547 | MS.gene29549:CDS |
| AAGCCCTAAACCCCTCTTCA+TGG | 0.361238 | 5.3:+65561489 | None:intergenic |
| GGCACAACCTTATAGTATTC+AGG | 0.364759 | 5.3:+65558903 | None:intergenic |
| TGGCGGTGGACGGTGGTGTT+CGG | 0.367849 | 5.3:-65562697 | MS.gene29549:CDS |
| TTTGTTGGTGGTGGGTTGGC+GGG | 0.379716 | 5.3:-65561230 | MS.gene29549:CDS |
| CTCGGCCTTTATAAGGGACT+TGG | 0.408288 | 5.3:-65560867 | MS.gene29549:CDS |
| TCAGGCATTGCATCATCAAC+AGG | 0.416081 | 5.3:-65560522 | MS.gene29549:intron |
| CTTCTCGCCGGAGGAGTTGC+CGG | 0.416372 | 5.3:-65562623 | MS.gene29549:CDS |
| AAGAACGCGGCTTGCTGCAC+AGG | 0.423096 | 5.3:-65561168 | MS.gene29549:intron |
| ACAAACAATTGTCAAGGAAG+AGG | 0.426240 | 5.3:-65560895 | MS.gene29549:CDS |
| AGCTAGGGTTGGTGTGGCGG+TGG | 0.432603 | 5.3:-65562711 | MS.gene29549:CDS |
| GGATTACTCGGCCTTTATAA+GGG | 0.437307 | 5.3:-65560873 | MS.gene29549:CDS |
| TAGTTCCAAGTCCCTTATAA+AGG | 0.439391 | 5.3:+65560862 | None:intergenic |
| CAACCACCGCCGCAACAGAT+TGG | 0.456851 | 5.3:-65562659 | MS.gene29549:CDS |
| GTTCCAATCTGTTGCGGCGG+TGG | 0.457668 | 5.3:+65562656 | None:intergenic |
| AGGGTTGGTGTGGCGGTGGA+CGG | 0.459893 | 5.3:-65562707 | MS.gene29549:CDS |
| TAAAAGTTAACAGAAGAGTA+AGG | 0.459944 | 5.3:+65561428 | None:intergenic |
| TGCTACATCTACTTATCCCT+TGG | 0.467252 | 5.3:-65561198 | MS.gene29549:CDS |
| GTACATTCAAGCATATATTC+CGG | 0.468396 | 5.3:-65558962 | MS.gene29549:CDS |
| TTCAAGAATAATCCATGAAG+AGG | 0.469893 | 5.3:-65561501 | MS.gene29549:CDS |
| TGGAGATGCAAACGGAAGCT+AGG | 0.470661 | 5.3:-65562727 | None:intergenic |
| TGGTGCTAATGCAGACTGTT+GGG | 0.472674 | 5.3:-65560762 | MS.gene29549:intron |
| ATATGCAGCAACGTTTCCAT+TGG | 0.474353 | 5.3:-65559057 | MS.gene29549:intron |
| GTGTACAATACAGGTCTCTT+TGG | 0.475434 | 5.3:-65558984 | MS.gene29549:CDS |
| CAGGTAAAATTCCTCTGTAA+AGG | 0.481174 | 5.3:+65558922 | None:intergenic |
| CTGGTGCTAATGCAGACTGT+TGG | 0.488868 | 5.3:-65560763 | MS.gene29549:intron |
| TTGGAATTTGGAGATGCAAA+CGG | 0.491470 | 5.3:-65562735 | None:intergenic |
| CAAAGCTCCGGCAACTCCTC+CGG | 0.494245 | 5.3:+65562616 | None:intergenic |
| CAAACAATTGTCAAGGAAGA+GGG | 0.494902 | 5.3:-65560894 | MS.gene29549:CDS |
| CGAGCCCGTGTGTACAATAC+AGG | 0.501443 | 5.3:-65558993 | MS.gene29549:CDS |
| AACCATCTTCAGTGTCTCAT+AGG | 0.501803 | 5.3:+65558857 | None:intergenic |
| GACCTATGAGACACTGAAGA+TGG | 0.501950 | 5.3:-65558859 | MS.gene29549:CDS |
| TCTCTATTACTTTGCAGTTG+CGG | 0.504953 | 5.3:+65561281 | None:intergenic |
| GGAAGCTAGGGTTGGTGTGG+CGG | 0.516819 | 5.3:-65562714 | MS.gene29549:CDS |
| GTTGGTGTGGCGGTGGACGG+TGG | 0.517223 | 5.3:-65562704 | MS.gene29549:CDS |
| TTCTTACGAGCATTACAAGA+AGG | 0.526863 | 5.3:-65561405 | MS.gene29549:intron |
| TATAAGGTTGTGCCTGGTGT+AGG | 0.529307 | 5.3:-65558894 | MS.gene29549:CDS |
| TAACAGAAGAGTAAGGTAAA+CGG | 0.531609 | 5.3:+65561435 | None:intergenic |
| CTCCGTCTAACAAGATCCAA+TGG | 0.539106 | 5.3:+65559041 | None:intergenic |
| TCAAGAATAATCCATGAAGA+GGG | 0.543154 | 5.3:-65561500 | MS.gene29549:CDS |
| GGAGATGCAAACGGAAGCTA+GGG | 0.555939 | 5.3:-65562726 | None:intergenic |
| AACAACAACAGTTGAATCAT+CGG | 0.558241 | 5.3:+65560566 | None:intergenic |
| GTCAAGGAAGAGGGATTACT+CGG | 0.560113 | 5.3:-65560885 | MS.gene29549:CDS |
| AAGCATATATTCCGGTCAGA+AGG | 0.563525 | 5.3:-65558954 | MS.gene29549:CDS |
| TTCCATTGGATCTTGTTAGA+CGG | 0.564464 | 5.3:-65559043 | MS.gene29549:CDS |
| GGGACTTGGAACTACCCTCT+TGG | 0.572235 | 5.3:-65560853 | MS.gene29549:intron |
| AGTTGATGGGTGTAATCATA+CGG | 0.572720 | 5.3:+65558818 | None:intergenic |
| CCGCGTTCTTACAAGATCCA+AGG | 0.576326 | 5.3:+65561181 | None:intergenic |
| TGCTTTACAAACAATTGTCA+AGG | 0.578320 | 5.3:-65560901 | MS.gene29549:CDS |
| AGACGGAGGAAGCAACTTGA+GGG | 0.579075 | 5.3:-65559026 | MS.gene29549:CDS |
| CGCGTTCTTACAAGATCCAA+GGG | 0.583255 | 5.3:+65561182 | None:intergenic |
| ACTATTTCTCAACTTCTCGC+CGG | 0.588113 | 5.3:-65562635 | MS.gene29549:CDS |
| AACGGAAGCTAGGGTTGGTG+TGG | 0.588572 | 5.3:-65562717 | MS.gene29549:CDS |
| GGCCACGCAAACCTTCTGAC+CGG | 0.592865 | 5.3:+65558943 | None:intergenic |
| TAGACGGAGGAAGCAACTTG+AGG | 0.593462 | 5.3:-65559027 | MS.gene29549:CDS |
| GAATACTATAAGGTTGTGCC+TGG | 0.602847 | 5.3:-65558900 | MS.gene29549:CDS |
| GAAATAGTTCCAATCTGTTG+CGG | 0.603040 | 5.3:+65562650 | None:intergenic |
| ATGCAAACGGAAGCTAGGGT+TGG | 0.605982 | 5.3:-65562722 | MS.gene29549:CDS |
| CCTTGGATCTTGTAAGAACG+CGG | 0.611552 | 5.3:-65561181 | MS.gene29549:CDS |
| TTCCGGTCAGAAGGTTTGCG+TGG | 0.617988 | 5.3:-65558945 | MS.gene29549:CDS |
| ATTTCTCAACTTCTCGCCGG+AGG | 0.624140 | 5.3:-65562632 | MS.gene29549:CDS |
| CATTGGATCTTGTTAGACGG+AGG | 0.625988 | 5.3:-65559040 | MS.gene29549:CDS |
| AGAGACCTGTATTGTACACA+CGG | 0.636276 | 5.3:+65558988 | None:intergenic |
| GGTTTGCGTGGCCTTTACAG+AGG | 0.639547 | 5.3:-65558933 | MS.gene29549:CDS |
| CAAGAATAATCCATGAAGAG+GGG | 0.640978 | 5.3:-65561499 | MS.gene29549:CDS |
| GTTGTTGTTAGTCTGGCTTG+TGG | 0.646435 | 5.3:-65560552 | MS.gene29549:CDS |
| ACGGAGGAAGCAACTTGAGG+GGG | 0.659118 | 5.3:-65559024 | MS.gene29549:CDS |
| GACGGAGGAAGCAACTTGAG+GGG | 0.659793 | 5.3:-65559025 | MS.gene29549:CDS |
| ATAGTTCCAATCTGTTGCGG+CGG | 0.660860 | 5.3:+65562653 | None:intergenic |
| ATAAAACAAATGCCTACACC+AGG | 0.667613 | 5.3:+65558882 | None:intergenic |
| AGGATTGTGAGTCTAGCAAG+TGG | 0.683649 | 5.3:+65562575 | None:intergenic |
| ATAATAACATCATACCAAGA+GGG | 0.684442 | 5.3:+65560839 | None:intergenic |
| GAGACCTGTATTGTACACAC+GGG | 0.686846 | 5.3:+65558989 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTCATTTTGTTATT+GGG | - | chr5.3:65559059-65559078 | MS.gene29549:intron | 10.0% |
| !!! | TTTTATATTCATTTTGTTAT+TGG | - | chr5.3:65559058-65559077 | MS.gene29549:intron | 10.0% |
| !! | ATTGTATGAGTTAATTAATT+TGG | - | chr5.3:65559155-65559174 | MS.gene29549:intron | 15.0% |
| !! | CATATATTATCAATATCAAT+TGG | - | chr5.3:65561935-65561954 | MS.gene29549:intron | 15.0% |
| !!! | ATAATAATTCTAGAAAACTA+AGG | + | chr5.3:65559944-65559963 | None:intergenic | 15.0% |
| !!! | CAATTGATATTGATAATATA+TGG | + | chr5.3:65561937-65561956 | None:intergenic | 15.0% |
| !!! | TTAGTAATTTTGTTGTATTT+TGG | - | chr5.3:65559084-65559103 | MS.gene29549:intron | 15.0% |
| !!! | TTCTTCAATTTTTATTTAAC+TGG | + | chr5.3:65561289-65561308 | None:intergenic | 15.0% |
| !! | AAATTCAATAGTTTGACTAA+AGG | + | chr5.3:65561313-65561332 | None:intergenic | 20.0% |
| !! | ACATGTCATAAAATAAAACT+TGG | + | chr5.3:65561570-65561589 | None:intergenic | 20.0% |
| !! | ATAAATGAAATTGTCAACAT+AGG | - | chr5.3:65561875-65561894 | MS.gene29549:intron | 20.0% |
| !! | ATAAGTTGTTTATCCAAATA+GGG | - | chr5.3:65559706-65559725 | MS.gene29549:intron | 20.0% |
| !! | CATGTCATAAAATAAAACTT+GGG | + | chr5.3:65561569-65561588 | None:intergenic | 20.0% |
| !! | TAATAAATTTCCTGAAAAAC+AGG | + | chr5.3:65561514-65561533 | None:intergenic | 20.0% |
| !! | TATTATCAATATCAATTGGA+TGG | - | chr5.3:65561939-65561958 | MS.gene29549:intron | 20.0% |
| !! | TTCAAATATGATTAGATTTC+TGG | - | chr5.3:65562337-65562356 | MS.gene29549:intron | 20.0% |
| !! | TTTATAAGTTCTTCCAAATA+GGG | - | chr5.3:65559431-65559450 | MS.gene29549:intron | 20.0% |
| !! | TTTCCAAAATTGAAATTAAG+AGG | + | chr5.3:65560478-65560497 | None:intergenic | 20.0% |
| !!! | AACATAATTTGTTATTGAAG+TGG | + | chr5.3:65562296-65562315 | None:intergenic | 20.0% |
| !!! | AATTTTACCTGAATACTATA+AGG | - | chr5.3:65562645-65562664 | MS.gene29549:CDS | 20.0% |
| !!! | ATAAATTTTTCACCTGAAAA+AGG | + | chr5.3:65559003-65559022 | None:intergenic | 20.0% |
| !!! | GTTTTGAATTGAGATAATTT+CGG | - | chr5.3:65559177-65559196 | MS.gene29549:intron | 20.0% |
| !!! | TATAACATTACTTGATTTGA+TGG | - | chr5.3:65562390-65562409 | MS.gene29549:intron | 20.0% |
| !!! | TATAATTTTTGCAGATTCAA+GGG | - | chr5.3:65559981-65560000 | MS.gene29549:intron | 20.0% |
| !!! | TTATAATTTTTGCAGATTCA+AGG | - | chr5.3:65559980-65559999 | MS.gene29549:intron | 20.0% |
| !!! | TTTTATAAGTTCTTCCAAAT+AGG | - | chr5.3:65559430-65559449 | MS.gene29549:intron | 20.0% |
| !!! | TTTTGAATTGAGATAATTTC+GGG | - | chr5.3:65559178-65559197 | MS.gene29549:intron | 20.0% |
| ! | AAAACATACTATTGCTGTAT+TGG | + | chr5.3:65562025-65562044 | None:intergenic | 25.0% |
| ! | AAAGAAGTTAATATCTGTAG+TGG | - | chr5.3:65561351-65561370 | MS.gene29549:intron | 25.0% |
| ! | AAATTATCAGGAATACGTAT+AGG | + | chr5.3:65561150-65561169 | None:intergenic | 25.0% |
| ! | ACATCAAAAGGTAAATTATC+AGG | + | chr5.3:65561162-65561181 | None:intergenic | 25.0% |
| ! | ATAATAACATCATACCAAGA+GGG | + | chr5.3:65560719-65560738 | None:intergenic | 25.0% |
| ! | GATAAGTTGTTTATCCAAAT+AGG | - | chr5.3:65559705-65559724 | MS.gene29549:intron | 25.0% |
| ! | GCCATTTGAAAATTTAGTAA+GGG | - | chr5.3:65561466-65561485 | MS.gene29549:CDS | 25.0% |
| ! | TAAAAGTTAACAGAAGAGTA+AGG | + | chr5.3:65560130-65560149 | None:intergenic | 25.0% |
| ! | TATGAATATACGTGAATTAG+AGG | + | chr5.3:65560928-65560947 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAATCAAAAC+AGG | - | chr5.3:65559766-65559785 | MS.gene29549:intron | 25.0% |
| ! | TGACAATTTCATTTATCCAT+TGG | + | chr5.3:65561871-65561890 | None:intergenic | 25.0% |
| ! | TTACAAGAAGGTAAGAATAT+TGG | - | chr5.3:65560162-65560181 | MS.gene29549:intron | 25.0% |
| ! | TTTCATATAAGCGGTAAAAA+TGG | - | chr5.3:65559384-65559403 | MS.gene29549:intron | 25.0% |
| ! | TTTGAATTGAGATAATTTCG+GGG | - | chr5.3:65559179-65559198 | MS.gene29549:intron | 25.0% |
| !! | AATCACAATTTTCTTCGTTT+AGG | + | chr5.3:65561816-65561835 | None:intergenic | 25.0% |
| !! | ACGAATTTTACTTACTATAG+AGG | - | chr5.3:65560622-65560641 | MS.gene29549:intron | 25.0% |
| !! | ATATGGTTTTCTTTCTTTGA+AGG | + | chr5.3:65561920-65561939 | None:intergenic | 25.0% |
| !! | CATCCTCTTAATTTCAATTT+TGG | - | chr5.3:65560472-65560491 | MS.gene29549:intron | 25.0% |
| !! | GATCTTTGTATACATTTTGT+TGG | - | chr5.3:65560310-65560329 | MS.gene29549:intron | 25.0% |
| !! | TATAATTTTTGTCACTGTGT+TGG | - | chr5.3:65559846-65559865 | MS.gene29549:intron | 25.0% |
| !! | TCCCTTACTAAATTTTCAAA+TGG | + | chr5.3:65561470-65561489 | None:intergenic | 25.0% |
| !! | TGCCATTTGAAAATTTAGTA+AGG | - | chr5.3:65561465-65561484 | MS.gene29549:CDS | 25.0% |
| !! | TTTACTTACTATAGAGGTAT+TGG | - | chr5.3:65560628-65560647 | MS.gene29549:intron | 25.0% |
| !! | TTTTGATGTTTCTTGCAATT+GGG | - | chr5.3:65561173-65561192 | MS.gene29549:CDS | 25.0% |
| !!! | ATAAGCTGTTTTCATATAAG+CGG | - | chr5.3:65559375-65559394 | MS.gene29549:intron | 25.0% |
| !!! | TATGATTAGATTTCTGGTTT+TGG | - | chr5.3:65562343-65562362 | MS.gene29549:intron | 25.0% |
| AACAACAACAGTTGAATCAT+CGG | + | chr5.3:65560992-65561011 | None:intergenic | 30.0% | |
| AAGCATATATTCCTTTCTTG+TGG | - | chr5.3:65560756-65560775 | MS.gene29549:intron | 30.0% | |
| AAGCGGTAAAAATGGTATAT+GGG | - | chr5.3:65559392-65559411 | MS.gene29549:intron | 30.0% | |
| ACTGTTATCATTAGCTATCT+TGG | + | chr5.3:65559583-65559602 | None:intergenic | 30.0% | |
| ATAAAATAACAACTCCATCC+CGG | + | chr5.3:65561444-65561463 | None:intergenic | 30.0% | |
| ATGGTGCATTTCACATAAAA+AGG | - | chr5.3:65562409-65562428 | MS.gene29549:intron | 30.0% | |
| ATTCTAATGTTGCAACTTTG+AGG | - | chr5.3:65560008-65560027 | MS.gene29549:intron | 30.0% | |
| ATTTCACATAAAAAGGGATC+AGG | - | chr5.3:65562416-65562435 | MS.gene29549:intron | 30.0% | |
| CAATTGCAAGAAACATCAAA+AGG | + | chr5.3:65561174-65561193 | None:intergenic | 30.0% | |
| GATAATAACATCATACCAAG+AGG | + | chr5.3:65560720-65560739 | None:intergenic | 30.0% | |
| GTACATTCAAGCATATATTC+CGG | - | chr5.3:65562593-65562612 | MS.gene29549:CDS | 30.0% | |
| TAACAGAAGAGTAAGGTAAA+CGG | + | chr5.3:65560123-65560142 | None:intergenic | 30.0% | |
| TAAGCGGTAAAAATGGTATA+TGG | - | chr5.3:65559391-65559410 | MS.gene29549:intron | 30.0% | |
| TATCAATATCAATTGGATGG+TGG | - | chr5.3:65561942-65561961 | MS.gene29549:intron | 30.0% | |
| TCAAGAATAATCCATGAAGA+GGG | - | chr5.3:65560055-65560074 | MS.gene29549:intron | 30.0% | |
| TGCTTTACAAACAATTGTCA+AGG | - | chr5.3:65560654-65560673 | MS.gene29549:intron | 30.0% | |
| TGGTGCATTTCACATAAAAA+GGG | - | chr5.3:65562410-65562429 | MS.gene29549:intron | 30.0% | |
| TTCAAGAATAATCCATGAAG+AGG | - | chr5.3:65560054-65560073 | MS.gene29549:intron | 30.0% | |
| TTCTATTGACACTAACTACT+TGG | - | chr5.3:65561982-65562001 | MS.gene29549:intron | 30.0% | |
| TTGACTTATTTGAGCTTATC+TGG | - | chr5.3:65559464-65559483 | MS.gene29549:intron | 30.0% | |
| TTTGATGTTTCTTGCAATTG+GGG | - | chr5.3:65561174-65561193 | MS.gene29549:CDS | 30.0% | |
| ! | CTCTCGAATTTCGATAATTT+TGG | - | chr5.3:65559803-65559822 | MS.gene29549:intron | 30.0% |
| ! | CTTTGTATACATTTTGTTGG+TGG | - | chr5.3:65560313-65560332 | MS.gene29549:intron | 30.0% |
| ! | CTTTTGATGTTTCTTGCAAT+TGG | - | chr5.3:65561172-65561191 | MS.gene29549:CDS | 30.0% |
| ! | GGAATATATGCTTTGAGTAA+TGG | + | chr5.3:65560749-65560768 | None:intergenic | 30.0% |
| ! | TCAACAGGTTAGTTATCAAA+AGG | - | chr5.3:65561048-65561067 | MS.gene29549:intron | 30.0% |
| ! | TCTTGATTGTTGAACTTTTG+AGG | - | chr5.3:65561116-65561135 | MS.gene29549:intron | 30.0% |
| ! | TTGATATGCACTTTTGTTCT+CGG | - | chr5.3:65560198-65560217 | MS.gene29549:intron | 30.0% |
| ! | TTGGGGTTTGTATATTCTTT+TGG | - | chr5.3:65561191-65561210 | MS.gene29549:CDS | 30.0% |
| !! | ATAAGTTTTGTGAGACAGTT+TGG | - | chr5.3:65559491-65559510 | MS.gene29549:intron | 30.0% |
| !! | TAAGTTTTGTGAGACAGTTT+GGG | - | chr5.3:65559492-65559511 | MS.gene29549:intron | 30.0% |
| !!! | TTTTGGAATTAGTTCTCACT+GGG | - | chr5.3:65562360-65562379 | MS.gene29549:intron | 30.0% |
| AACAATGATTGAGAGAGAGA+TGG | - | chr5.3:65559882-65559901 | MS.gene29549:intron | 35.0% | |
| ACAAACAATTGTCAAGGAAG+AGG | - | chr5.3:65560660-65560679 | MS.gene29549:intron | 35.0% | |
| ATAAAACAAATGCCTACACC+AGG | + | chr5.3:65562676-65562695 | None:intergenic | 35.0% | |
| ATGAACCTATATCATTCCCT+CGG | - | chr5.3:65561637-65561656 | MS.gene29549:intron | 35.0% | |
| CAAACAATTGTCAAGGAAGA+GGG | - | chr5.3:65560661-65560680 | MS.gene29549:intron | 35.0% | |
| CAAGAAATGACCTTATGTGA+CGG | + | chr5.3:65561616-65561635 | None:intergenic | 35.0% | |
| CAAGAATAATCCATGAAGAG+GGG | - | chr5.3:65560056-65560075 | MS.gene29549:intron | 35.0% | |
| CACTGGACAATTACATTTAC+AGG | + | chr5.3:65562243-65562262 | None:intergenic | 35.0% | |
| CAGGTAAAATTCCTCTGTAA+AGG | + | chr5.3:65562636-65562655 | None:intergenic | 35.0% | |
| CGATCTCAAGCTTTCATATA+CGG | + | chr5.3:65560841-65560860 | None:intergenic | 35.0% | |
| GAAATAGTTCCAATCTGTTG+CGG | + | chr5.3:65558908-65558927 | None:intergenic | 35.0% | |
| GAGAAGCTGATTGCTATATT+TGG | + | chr5.3:65560819-65560838 | None:intergenic | 35.0% | |
| GTCCATTTGACAACAAATTG+CGG | - | chr5.3:65562167-65562186 | MS.gene29549:intron | 35.0% | |
| GTGAATTAGAGGAAAATCAG+TGG | + | chr5.3:65560917-65560936 | None:intergenic | 35.0% | |
| GTTGTCAAATGGACAAGATA+TGG | + | chr5.3:65562161-65562180 | None:intergenic | 35.0% | |
| TAAATGTAATTGTCCAGTGC+AGG | - | chr5.3:65562244-65562263 | MS.gene29549:intron | 35.0% | |
| TAACAGATGAATTCAACCGT+AGG | + | chr5.3:65562471-65562490 | None:intergenic | 35.0% | |
| TAGTTCCAAGTCCCTTATAA+AGG | + | chr5.3:65560696-65560715 | None:intergenic | 35.0% | |
| TCTCTATTACTTTGCAGTTG+CGG | + | chr5.3:65560277-65560296 | None:intergenic | 35.0% | |
| TGTAAGACTATGACCCTATT+TGG | + | chr5.3:65559722-65559741 | None:intergenic | 35.0% | |
| TTCCATTGGATCTTGTTAGA+CGG | - | chr5.3:65562512-65562531 | MS.gene29549:intron | 35.0% | |
| TTCTTACGAGCATTACAAGA+AGG | - | chr5.3:65560150-65560169 | MS.gene29549:intron | 35.0% | |
| TTGCTCATGATAAAAGCCAA+TGG | - | chr5.3:65561852-65561871 | MS.gene29549:intron | 35.0% | |
| ! | ACAAGTTTTACTCAAAGCTC+CGG | + | chr5.3:65558954-65558973 | None:intergenic | 35.0% |
| ! | ATGAAAGCTTGAGATCGTTT+TGG | - | chr5.3:65560844-65560863 | MS.gene29549:intron | 35.0% |
| ! | TACTTGTTCACATGTTTCTG+AGG | - | chr5.3:65561750-65561769 | MS.gene29549:intron | 35.0% |
| ! | TAGACTCACAATCCTTTTTC+AGG | - | chr5.3:65558988-65559007 | MS.gene29549:CDS | 35.0% |
| ! | TTACCTTTTTCCTACATCTC+TGG | - | chr5.3:65561217-65561236 | MS.gene29549:CDS | 35.0% |
| ! | TTCAACTGTTGTTGTTAGTC+TGG | - | chr5.3:65560996-65561015 | MS.gene29549:intron | 35.0% |
| ! | TTTGGAATTAGTTCTCACTG+GGG | - | chr5.3:65562361-65562380 | MS.gene29549:intron | 35.0% |
| ! | TTTTATACGTGCAGTTTCTG+AGG | - | chr5.3:65560245-65560264 | MS.gene29549:intron | 35.0% |
| !! | TCACACTTTTCCTGTTTTTC+AGG | - | chr5.3:65561501-65561520 | MS.gene29549:CDS | 35.0% |
| !! | TGTATACATTTTGTTGGTGG+TGG | - | chr5.3:65560316-65560335 | MS.gene29549:intron | 35.0% |
| !! | TTTTGGAAACTTGCAAGACT+TGG | - | chr5.3:65560489-65560508 | MS.gene29549:intron | 35.0% |
| !!! | GTATACATTTTGTTGGTGGT+GGG | - | chr5.3:65560317-65560336 | MS.gene29549:intron | 35.0% |
| !!! | GTTTTGGAATTAGTTCTCAC+TGG | - | chr5.3:65562359-65562378 | MS.gene29549:intron | 35.0% |
| AACAGTTGAATCATCGGATC+TGG | + | chr5.3:65560986-65561005 | None:intergenic | 40.0% | |
| AACCATCTTCAGTGTCTCAT+AGG | + | chr5.3:65562701-65562720 | None:intergenic | 40.0% | |
| AAGCATATATTCCGGTCAGA+AGG | - | chr5.3:65562601-65562620 | MS.gene29549:CDS | 40.0% | |
| AATCCATGAAGAGGGGTTTA+GGG | - | chr5.3:65560063-65560082 | MS.gene29549:intron | 40.0% | |
| AATGATTGAGAGAGAGATGG+TGG | - | chr5.3:65559885-65559904 | MS.gene29549:intron | 40.0% | |
| ACATACAGTTGTTGTAGCAG+TGG | + | chr5.3:65562052-65562071 | None:intergenic | 40.0% | |
| AGAGACCTGTATTGTACACA+CGG | + | chr5.3:65562570-65562589 | None:intergenic | 40.0% | |
| AGTCAATCAAAACAGGCACT+AGG | - | chr5.3:65559773-65559792 | MS.gene29549:intron | 40.0% | |
| ATATGCAGCAACGTTTCCAT+TGG | - | chr5.3:65562498-65562517 | MS.gene29549:intron | 40.0% | |
| ATGATTGAGAGAGAGATGGT+GGG | - | chr5.3:65559886-65559905 | MS.gene29549:intron | 40.0% | |
| ATGCCAGAGATGTAGGAAAA+AGG | + | chr5.3:65561223-65561242 | None:intergenic | 40.0% | |
| CAATCCAAACATGCCCTATT+TGG | + | chr5.3:65559447-65559466 | None:intergenic | 40.0% | |
| CGTCACATAAGGTCATTTCT+TGG | - | chr5.3:65561614-65561633 | MS.gene29549:intron | 40.0% | |
| CTTGTAGACTAGAATGCCTA+CGG | - | chr5.3:65562452-65562471 | MS.gene29549:intron | 40.0% | |
| GAATACTATAAGGTTGTGCC+TGG | - | chr5.3:65562655-65562674 | MS.gene29549:CDS | 40.0% | |
| GATAATTTCGGGGACTGAAT+TGG | - | chr5.3:65559189-65559208 | MS.gene29549:intron | 40.0% | |
| GCTACAACAACTGTATGTTC+AGG | - | chr5.3:65562054-65562073 | MS.gene29549:intron | 40.0% | |
| GGATTACTCGGCCTTTATAA+GGG | - | chr5.3:65560682-65560701 | MS.gene29549:intron | 40.0% | |
| GGCACAACCTTATAGTATTC+AGG | + | chr5.3:65562655-65562674 | None:intergenic | 40.0% | |
| GTGTACAATACAGGTCTCTT+TGG | - | chr5.3:65562571-65562590 | MS.gene29549:CDS | 40.0% | |
| TAAGAAAGACAGCACTACAC+AGG | + | chr5.3:65562213-65562232 | None:intergenic | 40.0% | |
| TAATCCATGAAGAGGGGTTT+AGG | - | chr5.3:65560062-65560081 | MS.gene29549:intron | 40.0% | |
| TCTTCCAAATAGGGCATGTT+TGG | - | chr5.3:65559440-65559459 | MS.gene29549:intron | 40.0% | |
| TGCTACATCTACTTATCCCT+TGG | - | chr5.3:65560357-65560376 | MS.gene29549:intron | 40.0% | |
| TGTGTAGTGCTGTCTTTCTT+AGG | - | chr5.3:65562212-65562231 | MS.gene29549:intron | 40.0% | |
| ! | ACTATTTCTCAACTTCTCGC+CGG | - | chr5.3:65558920-65558939 | MS.gene29549:CDS | 40.0% |
| ! | CTTTGAGGAAAGCGAGTATA+TGG | - | chr5.3:65560023-65560042 | MS.gene29549:intron | 40.0% |
| ! | TCAAAACAGGCACTAGGTTT+TGG | - | chr5.3:65559779-65559798 | MS.gene29549:intron | 40.0% |
| !! | CTCCGCAATTTGTTGTCAAA+TGG | + | chr5.3:65562172-65562191 | None:intergenic | 40.0% |
| !! | GATCGTTTTGGATGTCAAAC+AGG | - | chr5.3:65560856-65560875 | MS.gene29549:CDS | 40.0% |
| !! | GGTTTAGGGCTTTTTGGAAA+GGG | - | chr5.3:65560077-65560096 | MS.gene29549:intron | 40.0% |
| !!! | GACACTGAAGATGGTTTTAG+CGG | - | chr5.3:65562705-65562724 | MS.gene29549:CDS | 40.0% |
| AAGAGGACACCTCTCACATT+TGG | + | chr5.3:65561666-65561685 | None:intergenic | 45.0% | |
| ACACTTGATGCCAGAGATGT+AGG | + | chr5.3:65561230-65561249 | None:intergenic | 45.0% | |
| ACATCAGGTGAAGGTAACCT+AGG | + | chr5.3:65561705-65561724 | None:intergenic | 45.0% | |
| ACCTTCACCTGATGTTTGGA+CGG | - | chr5.3:65561710-65561729 | MS.gene29549:intron | 45.0% | |
| ACGGAATCAGCTGCATAACT+TGG | + | chr5.3:65561597-65561616 | None:intergenic | 45.0% | |
| AGGATTGTGAGTCTAGCAAG+TGG | + | chr5.3:65558983-65559002 | None:intergenic | 45.0% | |
| AGTGGCTAAGTCCACAAGAA+AGG | + | chr5.3:65560770-65560789 | None:intergenic | 45.0% | |
| ATAGTTCCAATCTGTTGCGG+CGG | + | chr5.3:65558905-65558924 | None:intergenic | 45.0% | |
| CAACAACTGTATGTTCAGGC+AGG | - | chr5.3:65562058-65562077 | MS.gene29549:intron | 45.0% | |
| CATTGGATCTTGTTAGACGG+AGG | - | chr5.3:65562515-65562534 | MS.gene29549:intron | 45.0% | |
| CCTTGGATCTTGTAAGAACG+CGG | - | chr5.3:65560374-65560393 | MS.gene29549:intron | 45.0% | |
| CGCGTTCTTACAAGATCCAA+GGG | + | chr5.3:65560376-65560395 | None:intergenic | 45.0% | |
| CGGAATCAGCTGCATAACTT+GGG | + | chr5.3:65561596-65561615 | None:intergenic | 45.0% | |
| CTCCGTCTAACAAGATCCAA+TGG | + | chr5.3:65562517-65562536 | None:intergenic | 45.0% | |
| CTGATATCCGTCCAAACATC+AGG | + | chr5.3:65561720-65561739 | None:intergenic | 45.0% | |
| GACCTATGAGACACTGAAGA+TGG | - | chr5.3:65562696-65562715 | MS.gene29549:CDS | 45.0% | |
| GAGACCTGTATTGTACACAC+GGG | + | chr5.3:65562569-65562588 | None:intergenic | 45.0% | |
| GGAATCAGCTGCATAACTTG+GGG | + | chr5.3:65561595-65561614 | None:intergenic | 45.0% | |
| GGGATTACTCGGCCTTTATA+AGG | - | chr5.3:65560681-65560700 | MS.gene29549:intron | 45.0% | |
| GGTAACCGAGGGAATGATAT+AGG | + | chr5.3:65561645-65561664 | None:intergenic | 45.0% | |
| GGTTACCTTCACCTGATGTT+TGG | - | chr5.3:65561706-65561725 | MS.gene29549:intron | 45.0% | |
| GTCAAGGAAGAGGGATTACT+CGG | - | chr5.3:65560670-65560689 | MS.gene29549:intron | 45.0% | |
| TATAAGGTTGTGCCTGGTGT+AGG | - | chr5.3:65562661-65562680 | MS.gene29549:CDS | 45.0% | |
| TCTGCATTAGCACCAGTAAG+TGG | + | chr5.3:65560788-65560807 | None:intergenic | 45.0% | |
| TGATTGAGAGAGAGATGGTG+GGG | - | chr5.3:65559887-65559906 | MS.gene29549:intron | 45.0% | |
| TTGAGGTATGCTTCTCACCT+AGG | - | chr5.3:65561685-65561704 | MS.gene29549:intron | 45.0% | |
| TTGTGGACTTAGCCACTTAC+TGG | - | chr5.3:65560773-65560792 | MS.gene29549:intron | 45.0% | |
| ! | CTCTCACATTTGGTAACCGA+GGG | + | chr5.3:65561656-65561675 | None:intergenic | 45.0% |
| ! | GTGAGAAGCATACCTCAAAG+AGG | + | chr5.3:65561683-65561702 | None:intergenic | 45.0% |
| ! | GTTGTTGTTAGTCTGGCTTG+TGG | - | chr5.3:65561003-65561022 | MS.gene29549:intron | 45.0% |
| ! | TCAGGCATTGCATCATCAAC+AGG | - | chr5.3:65561033-65561052 | MS.gene29549:intron | 45.0% |
| ! | TGGTGCTAATGCAGACTGTT+GGG | - | chr5.3:65560793-65560812 | MS.gene29549:intron | 45.0% |
| !! | AAGAGGGGTTTAGGGCTTTT+TGG | - | chr5.3:65560071-65560090 | MS.gene29549:intron | 45.0% |
| !! | GGGTTTAGGGCTTTTTGGAA+AGG | - | chr5.3:65560076-65560095 | MS.gene29549:intron | 45.0% |
| !!! | ACATTTTGTTGGTGGTGGGT+TGG | - | chr5.3:65560321-65560340 | MS.gene29549:intron | 45.0% |
| AAGCCCTAAACCCCTCTTCA+TGG | + | chr5.3:65560069-65560088 | None:intergenic | 50.0% | |
| ACAAAGTTGCAAGCCTGCAC+TGG | + | chr5.3:65562260-65562279 | None:intergenic | 50.0% | |
| ACAAATTGCGGAGAGTCTCG+TGG | - | chr5.3:65562179-65562198 | MS.gene29549:intron | 50.0% | |
| AGACGGAGGAAGCAACTTGA+GGG | - | chr5.3:65562529-65562548 | MS.gene29549:intron | 50.0% | |
| ATGCAAACGGAAGCTAGGGT+TGG | - | chr5.3:65558833-65558852 | MS.gene29549:CDS | 50.0% | |
| ATTTCTCAACTTCTCGCCGG+AGG | - | chr5.3:65558923-65558942 | MS.gene29549:CDS | 50.0% | |
| CCGCGTTCTTACAAGATCCA+AGG | + | chr5.3:65560377-65560396 | None:intergenic | 50.0% | |
| CCTCGGTTACCAAATGTGAG+AGG | - | chr5.3:65561654-65561673 | MS.gene29549:intron | 50.0% | |
| CTCGGCCTTTATAAGGGACT+TGG | - | chr5.3:65560688-65560707 | MS.gene29549:intron | 50.0% | |
| TAGACGGAGGAAGCAACTTG+AGG | - | chr5.3:65562528-65562547 | MS.gene29549:intron | 50.0% | |
| TCCGTCCAAACATCAGGTGA+AGG | + | chr5.3:65561714-65561733 | None:intergenic | 50.0% | |
| TGTATGTTCAGGCAGGCTTG+TGG | - | chr5.3:65562065-65562084 | MS.gene29549:intron | 50.0% | |
| ! | CCTCTCACATTTGGTAACCG+AGG | + | chr5.3:65561657-65561676 | None:intergenic | 50.0% |
| ! | CTGGTGCTAATGCAGACTGT+TGG | - | chr5.3:65560792-65560811 | MS.gene29549:intron | 50.0% |
| ! | GATTGAGAGAGAGATGGTGG+GGG | - | chr5.3:65559888-65559907 | MS.gene29549:intron | 50.0% |
| ! | GCAGCTGATTCCGTCACATA+AGG | - | chr5.3:65561603-65561622 | MS.gene29549:intron | 50.0% |
| !! | TGTGAGAGGTGTCCTCTTTG+AGG | - | chr5.3:65561668-65561687 | MS.gene29549:intron | 50.0% |
| !!! | TTTTGTTGGTGGTGGGTTGG+CGG | - | chr5.3:65560324-65560343 | MS.gene29549:intron | 50.0% |
| AACAACTCCATCCCGGTCTC+TGG | + | chr5.3:65561437-65561456 | None:intergenic | 55.0% | |
| ACGGAGGAAGCAACTTGAGG+GGG | - | chr5.3:65562531-65562550 | MS.gene29549:intron | 55.0% | |
| CGAGCCCGTGTGTACAATAC+AGG | - | chr5.3:65562562-65562581 | MS.gene29549:intron | 55.0% | |
| GACGGAGGAAGCAACTTGAG+GGG | - | chr5.3:65562530-65562549 | MS.gene29549:intron | 55.0% | |
| GGGACTTGGAACTACCCTCT+TGG | - | chr5.3:65560702-65560721 | MS.gene29549:CDS | 55.0% | |
| GGTTTGCGTGGCCTTTACAG+AGG | - | chr5.3:65562622-65562641 | MS.gene29549:CDS | 55.0% | |
| TGACCCCTAGAACCAGAGAC+CGG | - | chr5.3:65561422-65561441 | MS.gene29549:CDS | 55.0% | |
| TTCCGGTCAGAAGGTTTGCG+TGG | - | chr5.3:65562610-65562629 | MS.gene29549:CDS | 55.0% | |
| ! | CTGGCTTGTGGCAGTCTTTC+AGG | - | chr5.3:65561015-65561034 | MS.gene29549:intron | 55.0% |
| ! | GGTGGGGGTACAGGTTATTG+AGG | - | chr5.3:65559903-65559922 | MS.gene29549:intron | 55.0% |
| !! | AACGGAAGCTAGGGTTGGTG+TGG | - | chr5.3:65558838-65558857 | MS.gene29549:CDS | 55.0% |
| !! | ATCCCGGTCTCTGGTTCTAG+GGG | + | chr5.3:65561428-65561447 | None:intergenic | 55.0% |
| !! | CATCCCGGTCTCTGGTTCTA+GGG | + | chr5.3:65561429-65561448 | None:intergenic | 55.0% |
| !! | TCTGGTTCTAGGGGTCAGTC+TGG | + | chr5.3:65561419-65561438 | None:intergenic | 55.0% |
| !! | TTTGTTGGTGGTGGGTTGGC+GGG | - | chr5.3:65560325-65560344 | MS.gene29549:intron | 55.0% |
| AAGCAACTTGAGGGGGCTGG+TGG | - | chr5.3:65562538-65562557 | MS.gene29549:intron | 60.0% | |
| AGGAAGCAACTTGAGGGGGC+TGG | - | chr5.3:65562535-65562554 | MS.gene29549:intron | 60.0% | |
| CAAAGCTCCGGCAACTCCTC+CGG | + | chr5.3:65558942-65558961 | None:intergenic | 60.0% | |
| CAACCACCGCCGCAACAGAT+TGG | - | chr5.3:65558896-65558915 | MS.gene29549:CDS | 60.0% | |
| CCTAGAACCAGAGACCGGGA+TGG | - | chr5.3:65561427-65561446 | MS.gene29549:CDS | 60.0% | |
| GACCCCTAGAACCAGAGACC+GGG | - | chr5.3:65561423-65561442 | MS.gene29549:CDS | 60.0% | |
| GGCCACGCAAACCTTCTGAC+CGG | + | chr5.3:65562615-65562634 | None:intergenic | 60.0% | |
| GTTCCAATCTGTTGCGGCGG+TGG | + | chr5.3:65558902-65558921 | None:intergenic | 60.0% | |
| ! | AGCAACTTGAGGGGGCTGGT+GGG | - | chr5.3:65562539-65562558 | MS.gene29549:intron | 60.0% |
| !! | AAGAACGCGGCTTGCTGCAC+AGG | - | chr5.3:65560387-65560406 | MS.gene29549:intron | 60.0% |
| !! | CCATCCCGGTCTCTGGTTCT+AGG | + | chr5.3:65561430-65561449 | None:intergenic | 60.0% |
| !! | GAGAGAGATGGTGGGGGTAC+AGG | - | chr5.3:65559894-65559913 | MS.gene29549:intron | 60.0% |
| !! | GGAAGCTAGGGTTGGTGTGG+CGG | - | chr5.3:65558841-65558860 | MS.gene29549:CDS | 60.0% |
| CTTCTCGCCGGAGGAGTTGC+CGG | - | chr5.3:65558932-65558951 | MS.gene29549:CDS | 65.0% | |
| TGGCGGTGGACGGTGGTGTT+CGG | - | chr5.3:65558858-65558877 | MS.gene29549:CDS | 65.0% | |
| !! | AGCTAGGGTTGGTGTGGCGG+TGG | - | chr5.3:65558844-65558863 | MS.gene29549:CDS | 65.0% |
| !! | AGGGTTGGTGTGGCGGTGGA+CGG | - | chr5.3:65558848-65558867 | MS.gene29549:CDS | 65.0% |
| GTTGGTGTGGCGGTGGACGG+TGG | - | chr5.3:65558851-65558870 | MS.gene29549:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65558833 | 65562744 | 65558833 | ID=MS.gene29549 |
| chr5.3 | mRNA | 65558833 | 65562744 | 65558833 | ID=MS.gene29549.t1;Parent=MS.gene29549 |
| chr5.3 | exon | 65562568 | 65562744 | 65562568 | ID=MS.gene29549.t1.exon1;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65562568 | 65562744 | 65562568 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65561406 | 65561582 | 65561406 | ID=MS.gene29549.t1.exon2;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65561406 | 65561582 | 65561406 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65561169 | 65561318 | 65561169 | ID=MS.gene29549.t1.exon3;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65561169 | 65561318 | 65561169 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65560854 | 65560955 | 65560854 | ID=MS.gene29549.t1.exon4;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65560854 | 65560955 | 65560854 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65560700 | 65560770 | 65560700 | ID=MS.gene29549.t1.exon5;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65560700 | 65560770 | 65560700 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65560523 | 65560590 | 65560523 | ID=MS.gene29549.t1.exon6;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65560523 | 65560590 | 65560523 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| chr5.3 | exon | 65558833 | 65559071 | 65558833 | ID=MS.gene29549.t1.exon7;Parent=MS.gene29549.t1 |
| chr5.3 | CDS | 65558833 | 65559071 | 65558833 | ID=cds.MS.gene29549.t1;Parent=MS.gene29549.t1 |
| Gene Sequence |
| Protein sequence |
