Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84401.t1 | XP_013443259.1 | 73.4 | 143 | 35 | 2 | 21 | 161 | 24 | 165 | 3.00E-51 | 211.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84401.t1 | Q9SA16 | 40.1 | 152 | 73 | 6 | 25 | 159 | 27 | 177 | 9.6e-22 | 104.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84401.t1 | B7FH95 | 73.4 | 143 | 35 | 2 | 21 | 161 | 24 | 165 | 2.2e-51 | 211.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene84401 | 0.817693 | 2.89E-52 | -1.69E-46 |
| MS.gene049151 | MS.gene84401 | 0.806027 | 1.00E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene84401 | 0.819145 | 1.35E-52 | -1.69E-46 |
| MS.gene049230 | MS.gene84401 | 0.807549 | 4.79E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene84401 | 0.860804 | 1.60E-63 | -1.69E-46 |
| MS.gene049910 | MS.gene84401 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene84401 | 0.831133 | 1.98E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene84401 | 0.81565 | 8.29E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene84401 | 0.819754 | 9.84E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene84401 | -0.824273 | 8.82E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene84401 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene050762 | MS.gene84401 | 0.853088 | 3.01E-61 | -1.69E-46 |
| MS.gene050763 | MS.gene84401 | 0.855191 | 7.44E-62 | -1.69E-46 |
| MS.gene050900 | MS.gene84401 | 0.807144 | 5.83E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene84401 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene84401 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene84401 | 0.824358 | 8.43E-54 | -1.69E-46 |
| MS.gene052077 | MS.gene84401 | 0.876519 | 1.31E-68 | -1.69E-46 |
| MS.gene052340 | MS.gene84401 | 0.801961 | 7.03E-49 | -1.69E-46 |
| MS.gene052389 | MS.gene84401 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene84401 | 0.825174 | 5.41E-54 | -1.69E-46 |
| MS.gene05316 | MS.gene84401 | 0.853067 | 3.05E-61 | -1.69E-46 |
| MS.gene053405 | MS.gene84401 | 0.816443 | 5.52E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene84401 | 0.893039 | 9.11E-75 | -1.69E-46 |
| MS.gene053577 | MS.gene84401 | 0.817545 | 3.12E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene84401 | 0.810029 | 1.41E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene84401 | 0.843947 | 1.02E-58 | -1.69E-46 |
| MS.gene054379 | MS.gene84401 | 0.864657 | 1.04E-64 | -1.69E-46 |
| MS.gene054542 | MS.gene84401 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene84401 | 0.862906 | 3.64E-64 | -1.69E-46 |
| MS.gene05510 | MS.gene84401 | 0.834053 | 3.74E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene84401 | 0.892694 | 1.25E-74 | -1.69E-46 |
| MS.gene05595 | MS.gene84401 | 0.821773 | 3.38E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene84401 | 0.817886 | 2.61E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene84401 | 0.818157 | 2.27E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene84401 | -0.809919 | 1.49E-50 | -1.69E-46 |
| MS.gene057199 | MS.gene84401 | 0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene057394 | MS.gene84401 | 0.806659 | 7.39E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene84401 | 0.820643 | 6.16E-53 | -1.69E-46 |
| MS.gene057610 | MS.gene84401 | 0.814544 | 1.46E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene84401 | 0.845166 | 4.81E-59 | -1.69E-46 |
| MS.gene057750 | MS.gene84401 | 0.83169 | 1.45E-55 | -1.69E-46 |
| MS.gene057929 | MS.gene84401 | 0.830808 | 2.38E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene84401 | 0.833833 | 4.25E-56 | -1.69E-46 |
| MS.gene058435 | MS.gene84401 | 0.845502 | 3.90E-59 | -1.69E-46 |
| MS.gene058503 | MS.gene84401 | 0.832073 | 1.16E-55 | -1.69E-46 |
| MS.gene058505 | MS.gene84401 | 0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene84401 | 0.805367 | 1.38E-49 | -1.69E-46 |
| MS.gene05872 | MS.gene84401 | 0.818359 | 2.04E-52 | -1.69E-46 |
| MS.gene058949 | MS.gene84401 | 0.838902 | 2.18E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene84401 | 0.801702 | 7.95E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene84401 | 0.846779 | 1.75E-59 | -1.69E-46 |
| MS.gene059420 | MS.gene84401 | 0.802083 | 6.64E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene84401 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene059609 | MS.gene84401 | 0.837041 | 6.57E-57 | -1.69E-46 |
| MS.gene059807 | MS.gene84401 | 0.830244 | 3.28E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene84401 | 0.831435 | 1.67E-55 | -1.69E-46 |
| MS.gene060084 | MS.gene84401 | 0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene84401 | 0.862566 | 4.63E-64 | -1.69E-46 |
| MS.gene060683 | MS.gene84401 | 0.839711 | 1.35E-57 | -1.69E-46 |
| MS.gene060685 | MS.gene84401 | 0.834779 | 2.46E-56 | -1.69E-46 |
| MS.gene060802 | MS.gene84401 | 0.845776 | 3.29E-59 | -1.69E-46 |
| MS.gene060851 | MS.gene84401 | 0.804475 | 2.12E-49 | -1.69E-46 |
| MS.gene060852 | MS.gene84401 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene060940 | MS.gene84401 | 0.836798 | 7.58E-57 | -1.69E-46 |
| MS.gene060942 | MS.gene84401 | 0.819483 | 1.13E-52 | -1.69E-46 |
| MS.gene060943 | MS.gene84401 | 0.845196 | 4.72E-59 | -1.69E-46 |
| MS.gene060998 | MS.gene84401 | 0.853961 | 1.69E-61 | -1.69E-46 |
| MS.gene061002 | MS.gene84401 | 0.835264 | 1.86E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene84401 | 0.808803 | 2.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84401.t1 | MTR_0026s0010 | 73.944 | 142 | 34 | 2 | 22 | 161 | 25 | 165 | 8.97e-65 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84401.t1 | AT1G10155 | 41.558 | 154 | 71 | 6 | 24 | 159 | 29 | 181 | 1.24e-26 | 99.4 |
| MS.gene84401.t1 | AT1G31200 | 39.370 | 127 | 62 | 5 | 47 | 159 | 3 | 128 | 7.26e-18 | 75.5 |
Find 43 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGGACTCAACATTATA+TGG | 0.205970 | 2.4:+37148578 | MS.gene84401:CDS |
| GAGGAAAAGGAACTTCATTT+TGG | 0.223452 | 2.4:+37149750 | MS.gene84401:CDS |
| CATATAATGTTGAGTCCTTT+TGG | 0.242983 | 2.4:-37148577 | None:intergenic |
| TTGTTAATTATATAAATAAA+TGG | 0.263676 | 2.4:-37148508 | None:intergenic |
| GATGGCTAAAGTTGGGAAAA+AGG | 0.285093 | 2.4:+37149632 | MS.gene84401:CDS |
| TCAAGCTTAGCCTCATCTTT+TGG | 0.301147 | 2.4:-37149711 | None:intergenic |
| CAGAGCTGACACAAGTTTCA+TGG | 0.313789 | 2.4:+37149496 | MS.gene84401:CDS |
| GTTTCATGGTTGGAGGTATC+TGG | 0.319576 | 2.4:+37149510 | MS.gene84401:CDS |
| GTTCCCCAACCGAAACCTTC+TGG | 0.324475 | 2.4:-37149591 | None:intergenic |
| AAAGTAAAAGTAGTAGATAA+AGG | 0.334874 | 2.4:+37149534 | MS.gene84401:CDS |
| ATGAAGTATGGAGTGGAAAA+TGG | 0.336655 | 2.4:+37149778 | MS.gene84401:CDS |
| GATATACGTGTGCAGGTTGA+TGG | 0.418940 | 2.4:+37148538 | MS.gene84401:CDS |
| AAGTAAAAGTAGTAGATAAA+GGG | 0.432345 | 2.4:+37149535 | MS.gene84401:CDS |
| AAAAGGACTCAACATTATAT+GGG | 0.432953 | 2.4:+37148579 | MS.gene84401:CDS |
| GGGGAAATGATCCTCGCTAC+TGG | 0.437766 | 2.4:+37148599 | MS.gene84401:CDS |
| AAGCCAGAAGGTTTCGGTTG+GGG | 0.447465 | 2.4:+37149588 | MS.gene84401:CDS |
| TGAAGTGTCAGGTGAGGAAA+AGG | 0.454863 | 2.4:+37149737 | MS.gene84401:CDS |
| TAAGCCAGAAGGTTTCGGTT+GGG | 0.457218 | 2.4:+37149587 | MS.gene84401:CDS |
| GAAGTTAAGCCAGAAGGTTT+CGG | 0.458947 | 2.4:+37149582 | MS.gene84401:CDS |
| GGGAACCAGCACAGATGTAC+TGG | 0.493026 | 2.4:+37149608 | MS.gene84401:CDS |
| AAGCTTGAAATTGAAGTGTC+AGG | 0.504703 | 2.4:+37149726 | MS.gene84401:CDS |
| GAAATATACAGTGAAATTTG+AGG | 0.518771 | 2.4:+37149557 | MS.gene84401:CDS |
| AAAGGGAACATATAAATATG+AGG | 0.525864 | 2.4:+37149650 | MS.gene84401:CDS |
| GACACAAGTTTCATGGTTGG+AGG | 0.541826 | 2.4:+37149503 | MS.gene84401:CDS |
| GCTGACACAAGTTTCATGGT+TGG | 0.548605 | 2.4:+37149500 | MS.gene84401:CDS |
| CATCACCAGTACATCTGTGC+TGG | 0.558599 | 2.4:-37149613 | None:intergenic |
| CGGAGGCGATATACGTGTGC+AGG | 0.566543 | 2.4:+37148531 | MS.gene84401:CDS |
| AAGTGCGAGATAAAACCAAA+AGG | 0.571191 | 2.4:+37148562 | MS.gene84401:CDS |
| TACTGGTGATGGCTAAAGTT+GGG | 0.572904 | 2.4:+37149625 | MS.gene84401:CDS |
| TGGAGTGGAAAATGGAAAGG+AGG | 0.576113 | 2.4:+37149786 | MS.gene84401:CDS |
| TTAAGCCAGAAGGTTTCGGT+TGG | 0.579224 | 2.4:+37149586 | MS.gene84401:CDS |
| GTACTGGTGATGGCTAAAGT+TGG | 0.597259 | 2.4:+37149624 | MS.gene84401:CDS |
| CAGCACAGATGTACTGGTGA+TGG | 0.597825 | 2.4:+37149614 | MS.gene84401:CDS |
| TTTATTTATATAATTAACAA+CGG | 0.607777 | 2.4:+37148511 | MS.gene84401:CDS |
| GTATGGAGTGGAAAATGGAA+AGG | 0.608777 | 2.4:+37149783 | MS.gene84401:CDS |
| ATATACAGTGAAATTTGAGG+TGG | 0.617992 | 2.4:+37149560 | MS.gene84401:CDS |
| GACAACCATTCCAAAAGATG+AGG | 0.618532 | 2.4:+37149701 | MS.gene84401:CDS |
| GAGGTGGAAGTTAAGCCAGA+AGG | 0.632622 | 2.4:+37149576 | MS.gene84401:CDS |
| ATTTATATAATTAACAACGG+AGG | 0.643308 | 2.4:+37148514 | MS.gene84401:CDS |
| AAAGGACTCAACATTATATG+GGG | 0.648494 | 2.4:+37148580 | MS.gene84401:CDS |
| TGAAATTGAAGTGTCAGGTG+AGG | 0.650518 | 2.4:+37149731 | MS.gene84401:CDS |
| GGATTGTATGAAGTATGGAG+TGG | 0.655368 | 2.4:+37149771 | MS.gene84401:CDS |
| GAGGTAGTGCATCTAGAGTG+TGG | 0.663909 | 2.4:+37149669 | MS.gene84401:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATGTATGTATAAATTA+AGG | + | chr2.4:37148926-37148945 | MS.gene84401:intron | 15.0% |
| !! | CATATGTATGTATAAATTAA+GGG | + | chr2.4:37148927-37148946 | MS.gene84401:intron | 15.0% |
| !!! | AAATCGAAGAAATTTTTTAA+AGG | + | chr2.4:37149325-37149344 | MS.gene84401:intron | 15.0% |
| !!! | AATCGAAGAAATTTTTTAAA+GGG | + | chr2.4:37149326-37149345 | MS.gene84401:intron | 15.0% |
| !!! | TATGAATTTTATATTTTTGG+CGG | - | chr2.4:37149197-37149216 | None:intergenic | 15.0% |
| !! | AAAAAACAACAAATATCAAG+AGG | - | chr2.4:37148734-37148753 | None:intergenic | 20.0% |
| !! | AAAGTAAAAGTAGTAGATAA+AGG | + | chr2.4:37149534-37149553 | MS.gene84401:CDS | 20.0% |
| !! | AAGTAAAAGTAGTAGATAAA+GGG | + | chr2.4:37149535-37149554 | MS.gene84401:CDS | 20.0% |
| !! | ATTTATATAATTAACAACGG+AGG | + | chr2.4:37148514-37148533 | MS.gene84401:CDS | 20.0% |
| !!! | ACATTTTATATACTGATTTG+AGG | + | chr2.4:37148792-37148811 | MS.gene84401:intron | 20.0% |
| !!! | CTAAAAACATATTTAAAGCA+TGG | + | chr2.4:37149381-37149400 | MS.gene84401:intron | 20.0% |
| !!! | TGTTGTTTTTTTTTTTGTTG+AGG | + | chr2.4:37148743-37148762 | MS.gene84401:intron | 20.0% |
| ! | AAAAGGACTCAACATTATAT+GGG | + | chr2.4:37148579-37148598 | MS.gene84401:CDS | 25.0% |
| ! | AAAGGGAACATATAAATATG+AGG | + | chr2.4:37149650-37149669 | MS.gene84401:CDS | 25.0% |
| ! | GAAATATACAGTGAAATTTG+AGG | + | chr2.4:37149557-37149576 | MS.gene84401:CDS | 25.0% |
| ! | TATACATACATATGTGAAGA+AGG | - | chr2.4:37148921-37148940 | None:intergenic | 25.0% |
| ! | TTATAGATACTAAAAGTCGA+AGG | - | chr2.4:37149014-37149033 | None:intergenic | 25.0% |
| !! | AAGTCGAAGGAAAATTTTAT+AGG | - | chr2.4:37149001-37149020 | None:intergenic | 25.0% |
| !! | ACATGAGTTGACTTAAAAAT+AGG | - | chr2.4:37149061-37149080 | None:intergenic | 25.0% |
| !! | AGTCGAAGGAAAATTTTATA+GGG | - | chr2.4:37149000-37149019 | None:intergenic | 25.0% |
| !! | ATGAGTTGACTTAAAAATAG+GGG | - | chr2.4:37149059-37149078 | None:intergenic | 25.0% |
| !! | ATTTTGGATTGTATGAAGTA+TGG | + | chr2.4:37149766-37149785 | MS.gene84401:CDS | 25.0% |
| !! | CATGAGTTGACTTAAAAATA+GGG | - | chr2.4:37149060-37149079 | None:intergenic | 25.0% |
| !! | TACATATGAGTTTGCTTAAA+AGG | + | chr2.4:37149263-37149282 | MS.gene84401:intron | 25.0% |
| AAAGGACTCAACATTATATG+GGG | + | chr2.4:37148580-37148599 | MS.gene84401:CDS | 30.0% | |
| ATATACAGTGAAATTTGAGG+TGG | + | chr2.4:37149560-37149579 | MS.gene84401:CDS | 30.0% | |
| CAAAAGGACTCAACATTATA+TGG | + | chr2.4:37148578-37148597 | MS.gene84401:CDS | 30.0% | |
| TGATTAGATAGAGTTCTACA+TGG | - | chr2.4:37148705-37148724 | None:intergenic | 30.0% | |
| TGTCTTTCACAAATATCAAG+AGG | - | chr2.4:37148775-37148794 | None:intergenic | 30.0% | |
| TTAAGGGTTAAATACGTGTT+TGG | + | chr2.4:37148943-37148962 | MS.gene84401:intron | 30.0% | |
| TTATGTGCACACATTATGTT+AGG | + | chr2.4:37148865-37148884 | MS.gene84401:intron | 30.0% | |
| ! | AAAAATTCCATCTTCGCTTT+TGG | - | chr2.4:37149294-37149313 | None:intergenic | 30.0% |
| ! | CATATAATGTTGAGTCCTTT+TGG | - | chr2.4:37148580-37148599 | None:intergenic | 30.0% |
| ! | TATGAGTTTGCTTAAAAGGA+TGG | + | chr2.4:37149267-37149286 | MS.gene84401:intron | 30.0% |
| AAGTGCGAGATAAAACCAAA+AGG | + | chr2.4:37148562-37148581 | MS.gene84401:CDS | 35.0% | |
| ATGAAGTATGGAGTGGAAAA+TGG | + | chr2.4:37149778-37149797 | MS.gene84401:CDS | 35.0% | |
| ATGGCTAAAGTTGGGAAAAA+GGG | + | chr2.4:37149633-37149652 | MS.gene84401:CDS | 35.0% | |
| ! | AAGCTTGAAATTGAAGTGTC+AGG | + | chr2.4:37149726-37149745 | MS.gene84401:CDS | 35.0% |
| ! | GAGGAAAAGGAACTTCATTT+TGG | + | chr2.4:37149750-37149769 | MS.gene84401:CDS | 35.0% |
| ! | TCTATTATTTTCCAGTAGCG+AGG | - | chr2.4:37148613-37148632 | None:intergenic | 35.0% |
| !!! | TCTTTTGGAATGGTTGTCTT+AGG | - | chr2.4:37149699-37149718 | None:intergenic | 35.0% |
| GAAGTTAAGCCAGAAGGTTT+CGG | + | chr2.4:37149582-37149601 | MS.gene84401:CDS | 40.0% | |
| GACAACCATTCCAAAAGATG+AGG | + | chr2.4:37149701-37149720 | MS.gene84401:CDS | 40.0% | |
| GATGGCTAAAGTTGGGAAAA+AGG | + | chr2.4:37149632-37149651 | MS.gene84401:CDS | 40.0% | |
| GGATTGTATGAAGTATGGAG+TGG | + | chr2.4:37149771-37149790 | MS.gene84401:CDS | 40.0% | |
| GTATGGAGTGGAAAATGGAA+AGG | + | chr2.4:37149783-37149802 | MS.gene84401:CDS | 40.0% | |
| GTGCACACATTATGTTAGGA+TGG | + | chr2.4:37148869-37148888 | MS.gene84401:intron | 40.0% | |
| ! | TCAAGCTTAGCCTCATCTTT+TGG | - | chr2.4:37149714-37149733 | None:intergenic | 40.0% |
| ! | TGAAATTGAAGTGTCAGGTG+AGG | + | chr2.4:37149731-37149750 | MS.gene84401:CDS | 40.0% |
| !! | CTTAGCCTCATCTTTTGGAA+TGG | - | chr2.4:37149709-37149728 | None:intergenic | 40.0% |
| !! | TACTGGTGATGGCTAAAGTT+GGG | + | chr2.4:37149625-37149644 | MS.gene84401:CDS | 40.0% |
| CAGAGCTGACACAAGTTTCA+TGG | + | chr2.4:37149496-37149515 | MS.gene84401:CDS | 45.0% | |
| GACACAAGTTTCATGGTTGG+AGG | + | chr2.4:37149503-37149522 | MS.gene84401:CDS | 45.0% | |
| GCTGACACAAGTTTCATGGT+TGG | + | chr2.4:37149500-37149519 | MS.gene84401:CDS | 45.0% | |
| TAAGCCAGAAGGTTTCGGTT+GGG | + | chr2.4:37149587-37149606 | MS.gene84401:CDS | 45.0% | |
| TGGAGTGGAAAATGGAAAGG+AGG | + | chr2.4:37149786-37149805 | MS.gene84401:CDS | 45.0% | |
| TTAAGCCAGAAGGTTTCGGT+TGG | + | chr2.4:37149586-37149605 | MS.gene84401:CDS | 45.0% | |
| ! | GATATACGTGTGCAGGTTGA+TGG | + | chr2.4:37148538-37148557 | MS.gene84401:CDS | 45.0% |
| ! | TGAAGTGTCAGGTGAGGAAA+AGG | + | chr2.4:37149737-37149756 | MS.gene84401:CDS | 45.0% |
| !! | GTACTGGTGATGGCTAAAGT+TGG | + | chr2.4:37149624-37149643 | MS.gene84401:CDS | 45.0% |
| !! | GTTTCATGGTTGGAGGTATC+TGG | + | chr2.4:37149510-37149529 | MS.gene84401:CDS | 45.0% |
| !! | TTGTTAATTATATAAATAAA+TGG | - | chr2.4:37148511-37148530 | None:intergenic | 5.0% |
| !! | TTTATTTATATAATTAACAA+CGG | + | chr2.4:37148511-37148530 | MS.gene84401:CDS | 5.0% |
| !!! | AAATATGAATTTTATATTTT+TGG | - | chr2.4:37149200-37149219 | None:intergenic | 5.0% |
| AAGCCAGAAGGTTTCGGTTG+GGG | + | chr2.4:37149588-37149607 | MS.gene84401:CDS | 50.0% | |
| CATCACCAGTACATCTGTGC+TGG | - | chr2.4:37149616-37149635 | None:intergenic | 50.0% | |
| GAGGTGGAAGTTAAGCCAGA+AGG | + | chr2.4:37149576-37149595 | MS.gene84401:CDS | 50.0% | |
| GGATGGACCAAAAGCGAAGA+TGG | + | chr2.4:37149284-37149303 | MS.gene84401:intron | 50.0% | |
| ! | CAGCACAGATGTACTGGTGA+TGG | + | chr2.4:37149614-37149633 | MS.gene84401:CDS | 50.0% |
| ! | GAGGTAGTGCATCTAGAGTG+TGG | + | chr2.4:37149669-37149688 | MS.gene84401:CDS | 50.0% |
| GGGAACCAGCACAGATGTAC+TGG | + | chr2.4:37149608-37149627 | MS.gene84401:CDS | 55.0% | |
| GGGGAAATGATCCTCGCTAC+TGG | + | chr2.4:37148599-37148618 | MS.gene84401:CDS | 55.0% | |
| GTTCCCCAACCGAAACCTTC+TGG | - | chr2.4:37149594-37149613 | None:intergenic | 55.0% | |
| CGGAGGCGATATACGTGTGC+AGG | + | chr2.4:37148531-37148550 | MS.gene84401:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37148502 | 37149848 | 37148502 | ID=MS.gene84401 |
| chr2.4 | mRNA | 37148502 | 37149848 | 37148502 | ID=MS.gene84401.t1;Parent=MS.gene84401 |
| chr2.4 | exon | 37148502 | 37148632 | 37148502 | ID=MS.gene84401.t1.exon1;Parent=MS.gene84401.t1 |
| chr2.4 | CDS | 37148502 | 37148632 | 37148502 | ID=cds.MS.gene84401.t1;Parent=MS.gene84401.t1 |
| chr2.4 | exon | 37149488 | 37149848 | 37149488 | ID=MS.gene84401.t1.exon2;Parent=MS.gene84401.t1 |
| chr2.4 | CDS | 37149488 | 37149848 | 37149488 | ID=cds.MS.gene84401.t1;Parent=MS.gene84401.t1 |
| Gene Sequence |
| Protein sequence |
