AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059021

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059021.t1 MTR_1g069215 97.112 277 8 0 1 277 1 277 0.0 559
MS.gene059021.t1 MTR_3g073070 89.892 277 26 1 1 277 1 275 2.64e-173 479
MS.gene059021.t1 MTR_3g073070 87.072 263 32 1 1 263 1 261 7.69e-166 461
MS.gene059021.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 2.65e-12 64.7
MS.gene059021.t1 MTR_2g005900 41.053 95 50 3 175 266 58 149 3.08e-12 65.1
MS.gene059021.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 4.99e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059021.t1 AT3G20970 83.654 208 34 0 68 275 72 279 3.94e-131 373
MS.gene059021.t1 AT1G51390 78.995 219 42 2 50 268 53 267 2.26e-126 360
MS.gene059021.t1 AT3G20970 84.106 151 24 0 68 218 72 222 1.23e-92 273
MS.gene059021.t1 AT5G49940 46.269 67 34 1 200 266 97 161 9.08e-13 65.9
MS.gene059021.t1 AT4G25910 47.761 67 33 1 200 266 96 160 1.04e-12 66.6
MS.gene059021.t1 AT5G49940 46.269 67 34 1 200 266 97 161 2.22e-12 65.5

Find 66 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTTGCTGCTATTA+TGG 0.182790 1.2:+52045850 MS.gene059021:CDS
TGCGATGATCAAGGAACTTT+TGG 0.229879 1.2:+52046158 MS.gene059021:CDS
CTCCTTTGCCCGGTGGAAAA+TGG 0.230244 1.2:-52045518 None:intergenic
ATTATGGATTTCTACTCTTC+AGG 0.292022 1.2:+52045866 MS.gene059021:CDS
CCACGATGCATCTTCCGATT+TGG 0.310465 1.2:-52045813 None:intergenic
CAGCAAAGATTTCAGGCTTA+AGG 0.326720 1.2:-52045841 None:intergenic
GTCTTTGGAAGCGGCAGCTT+GGG 0.330417 1.2:-52045909 None:intergenic
ATAATAGCAGCAAAGATTTC+AGG 0.354714 1.2:-52045848 None:intergenic
ATCGTGGATTGCTGTGTCTT+TGG 0.387795 1.2:-52045924 None:intergenic
CAAAGGTGTGGAACAAGAAT+TGG 0.398435 1.2:+52047131 MS.gene059021:CDS
AACATAAGAGACTCTGGATT+TGG 0.402386 1.2:-52045569 None:intergenic
GATTTGGCGTGGACTGTGTT+TGG 0.406034 1.2:-52045553 None:intergenic
TTCAGTGTCACCGAAGAACT+TGG 0.408332 1.2:-52046619 None:intergenic
TTCATGGCGGAACGAGGGTT+AGG 0.411014 1.2:-52045635 None:intergenic
GGAACGAGGGTTAGGGAAAT+CGG 0.415132 1.2:-52045627 None:intergenic
TCTTCGGTGACACTGAAATC+AGG 0.424055 1.2:+52046625 MS.gene059021:CDS
TGTGATTAGTCTCTGATTTG+AGG 0.428418 1.2:-52045385 None:intergenic
GTGATTAGTCTCTGATTTGA+GGG 0.430671 1.2:-52045384 None:intergenic
TTTAGCGAGAGGAGAATTCA+TGG 0.440507 1.2:-52045651 None:intergenic
TGTCTTTGGAAGCGGCAGCT+TGG 0.456320 1.2:-52045910 None:intergenic
GGTGGGGACATTGTGTATTG+TGG 0.468819 1.2:+52046213 MS.gene059021:CDS
TAGTGGCTGCCCAAGTTCTT+CGG 0.469327 1.2:+52046609 MS.gene059021:CDS
AGCAGCTTTAAGTGGACAAA+CGG 0.505572 1.2:+52047170 MS.gene059021:CDS
GAAGAAGAAGCAGCTTTAAG+TGG 0.530262 1.2:+52047162 MS.gene059021:CDS
TCGTATCCGACCAACTGTAC+AGG 0.532621 1.2:+52046185 MS.gene059021:CDS
TCATGGCGGAACGAGGGTTA+GGG 0.534084 1.2:-52045634 None:intergenic
AGATGGAAATGGTGAGGCGG+AGG 0.537192 1.2:-52045495 None:intergenic
GGATGAAACATAAGAGACTC+TGG 0.539372 1.2:-52045575 None:intergenic
ACATCCATGACAGGTTTACC+AGG 0.541119 1.2:-52045596 None:intergenic
TGAAACAGTTGCGATGATCA+AGG 0.541980 1.2:+52046149 MS.gene059021:CDS
GATTGCTGTGTCTTTGGAAG+CGG 0.547638 1.2:-52045918 None:intergenic
TTGCTGCATTTACAGGTCAA+AGG 0.551548 1.2:+52047114 MS.gene059021:intron
CGACCAACTGTACAGGATGA+TGG 0.562611 1.2:+52046192 MS.gene059021:CDS
GTGGAAAATGGAGATGGAAA+TGG 0.563081 1.2:-52045506 None:intergenic
AAACATACTCCTCCTTTGCC+CGG 0.564888 1.2:-52045528 None:intergenic
GCATTGCGGTTGTAGTTGCA+AGG 0.571191 1.2:-52045461 None:intergenic
TCAGTGTCACCGAAGAACTT+GGG 0.571513 1.2:-52046618 None:intergenic
GAGTCTCTTATGTTTCATCC+TGG 0.574002 1.2:+52045578 MS.gene059021:CDS
TGCCCGGTGGAAAATGGAGA+TGG 0.578393 1.2:-52045512 None:intergenic
CCACCATCATCCTGTACAGT+TGG 0.579401 1.2:-52046195 None:intergenic
AACTGTACAGGATGATGGTG+GGG 0.584854 1.2:+52046197 MS.gene059021:CDS
GGTAAACCTGTCATGGATGT+TGG 0.587174 1.2:+52045599 MS.gene059021:CDS
TCATCCTGGTAAACCTGTCA+TGG 0.592000 1.2:+52045592 MS.gene059021:CDS
CAAATCGGAAGATGCATCGT+GGG 0.592355 1.2:+52045814 MS.gene059021:CDS
CAACTGTACAGGATGATGGT+GGG 0.594080 1.2:+52046196 MS.gene059021:CDS
ATCGTCAAACTCAAAATGCA+AGG 0.595778 1.2:+52046580 MS.gene059021:CDS
CCAACTGTACAGGATGATGG+TGG 0.609164 1.2:+52046195 MS.gene059021:CDS
GCGCTACCAACATCCATGAC+AGG 0.609183 1.2:-52045605 None:intergenic
CATCATCCTGTACAGTTGGT+CGG 0.612141 1.2:-52046191 None:intergenic
GAGAATTCATGGCGGAACGA+GGG 0.618160 1.2:-52045640 None:intergenic
GGAGAATTCATGGCGGAACG+AGG 0.619141 1.2:-52045641 None:intergenic
AAAATGCAAGGAGCGTGTAG+TGG 0.619177 1.2:+52046592 MS.gene059021:CDS
GCTTGGGAGTCTAGAAAGAG+TGG 0.628813 1.2:-52045893 None:intergenic
GCATTTACAGGTCAAAGGTG+TGG 0.632082 1.2:+52047119 MS.gene059021:intron
TGGAGATGGAAATGGTGAGG+CGG 0.634856 1.2:-52045498 None:intergenic
AAGAGACTCTGGATTTGGCG+TGG 0.639473 1.2:-52045564 None:intergenic
TAGTTGCAAGGTTGAAACGA+TGG 0.642224 1.2:-52045449 None:intergenic
CATACTCCTCCTTTGCCCGG+TGG 0.656092 1.2:-52045525 None:intergenic
CCAAATCGGAAGATGCATCG+TGG 0.660421 1.2:+52045813 MS.gene059021:CDS
TGTGAAGGATGACGGTGGTG+AGG 0.663047 1.2:+52045312 None:intergenic
TTAGGAAAACGATTACGACT+AGG 0.664261 1.2:+52045350 MS.gene059021:CDS
AAATGGAGATGGAAATGGTG+AGG 0.665109 1.2:-52045501 None:intergenic
GGAACAAGAATTGGATGCTG+AGG 0.670849 1.2:+52047140 MS.gene059021:CDS
GCTGATGCATTATGTACCTG+AGG 0.715793 1.2:+52046660 MS.gene059021:CDS
AGCGAGAGGAGAATTCATGG+CGG 0.794743 1.2:-52045648 None:intergenic
TGAACTGTGAAGGATGACGG+TGG 0.822277 1.2:+52045307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTTAAATTTCATAAA+AGG + chr1.2:52046006-52046025 MS.gene059021:intron 10.0%
!!! TTTTATGAAATTTAAGTAAA+AGG - chr1.2:52046007-52046026 None:intergenic 10.0%
!! ATATAAAAAACAAGTAAAAG+AGG - chr1.2:52046535-52046554 None:intergenic 15.0%
!!! ATTGTTTTTTTAATTGTTAC+AGG + chr1.2:52045749-52045768 MS.gene059021:intron 15.0%
!!! TAATTTTATTTCAAGGAATT+TGG + chr1.2:52045981-52046000 MS.gene059021:intron 15.0%
!!! TCATCAATTATTTTTTAACA+CGG - chr1.2:52046394-52046413 None:intergenic 15.0%
!! AAATAGAAAACCTAATTCAA+TGG - chr1.2:52046899-52046918 None:intergenic 20.0%
!! AGCATATCTTATAAGTTAAT+TGG - chr1.2:52046867-52046886 None:intergenic 20.0%
!! ATATAAATGGAAACAACAAA+TGG - chr1.2:52046722-52046741 None:intergenic 20.0%
!! GTTGAACAATTCATATAAAT+TGG - chr1.2:52047060-52047079 None:intergenic 20.0%
!! TAAAAAAACAATCAGAAAAC+AGG - chr1.2:52045741-52045760 None:intergenic 20.0%
!! TCAATCACCATAAATATAAA+TGG - chr1.2:52046735-52046754 None:intergenic 20.0%
!!! AAATCAATTTTTGCTATTGA+TGG + chr1.2:52045671-52045690 MS.gene059021:CDS 20.0%
!!! ATTGCTGTAATTTTATTTCA+AGG + chr1.2:52045974-52045993 MS.gene059021:intron 20.0%
!!! GAACTTTATCTCATTATTTT+AGG + chr1.2:52046364-52046383 MS.gene059021:intron 20.0%
!!! GTTGTTTCCATTTATATTTA+TGG + chr1.2:52046725-52046744 MS.gene059021:intron 20.0%
!!! TTATTTAAAGCAGCATTAAA+AGG + chr1.2:52047027-52047046 MS.gene059021:intron 20.0%
! AATAAAAGAAATGAAAGGAG+TGG - chr1.2:52045714-52045733 None:intergenic 25.0%
! AGAGTATAGATTATTCATTG+AGG - chr1.2:52046294-52046313 None:intergenic 25.0%
! GCACAAATAAAAGAAATGAA+AGG - chr1.2:52045719-52045738 None:intergenic 25.0%
! TTCTATTTATCTTACAGGAT+TGG + chr1.2:52046911-52046930 MS.gene059021:intron 25.0%
!! AGGTTTTCTATTTATCTTAC+AGG + chr1.2:52046906-52046925 MS.gene059021:intron 25.0%
!! GGAAATTTGCTCATTTAATT+TGG - chr1.2:52046465-52046484 None:intergenic 25.0%
!!! CATTCTTAAGTTGATTTTGA+GGG + chr1.2:52046816-52046835 MS.gene059021:intron 25.0%
AATCAACTTAAGAATGCCAT+AGG - chr1.2:52046812-52046831 None:intergenic 30.0%
AATGAGAAAAACTTACATCG+TGG - chr1.2:52045943-52045962 None:intergenic 30.0%
ACATTGAAACCCAAATAACA+AGG - chr1.2:52046258-52046277 None:intergenic 30.0%
ATAATAGCAGCAAAGATTTC+AGG - chr1.2:52045851-52045870 None:intergenic 30.0%
ATTATGGATTTCTACTCTTC+AGG + chr1.2:52045866-52045885 MS.gene059021:CDS 30.0%
ATTGAAACCCAAATAACAAG+GGG - chr1.2:52046256-52046275 None:intergenic 30.0%
CATTGAAACCCAAATAACAA+GGG - chr1.2:52046257-52046276 None:intergenic 30.0%
GCATATTACAAGGATAAACT+TGG + chr1.2:52046838-52046857 MS.gene059021:intron 30.0%
TACAAATGCTTCATTACAGA+AGG - chr1.2:52046784-52046803 None:intergenic 30.0%
TAGAAAACCTAATTCAATGG+AGG - chr1.2:52046896-52046915 None:intergenic 30.0%
TGAAATCTTTGCTGCTATTA+TGG + chr1.2:52045850-52045869 MS.gene059021:CDS 30.0%
TTCAAGATCTCAAAACTGAA+TGG + chr1.2:52046095-52046114 MS.gene059021:intron 30.0%
! TTTTGTCACTGTTACCAAAT+CGG + chr1.2:52045799-52045818 MS.gene059021:CDS 30.0%
!! GTTTGTTTTCTCTAGAGATA+CGG + chr1.2:52046555-52046574 MS.gene059021:intron 30.0%
!! TTTGTTTTCTCTAGAGATAC+GGG + chr1.2:52046556-52046575 MS.gene059021:intron 30.0%
!!! ATTCAGTTTTGAGATCTTGA+AGG - chr1.2:52046096-52046115 None:intergenic 30.0%
!!! GCATTCTTAAGTTGATTTTG+AGG + chr1.2:52046815-52046834 MS.gene059021:intron 30.0%
AAATAACAAGGGGGAACTTA+CGG - chr1.2:52046246-52046265 None:intergenic 35.0%
AACATAAGAGACTCTGGATT+TGG - chr1.2:52045572-52045591 None:intergenic 35.0%
AAGCATTTGTACCTTTCCTA+TGG + chr1.2:52046793-52046812 MS.gene059021:intron 35.0%
ACTTAAGAATGCCATAGGAA+AGG - chr1.2:52046807-52046826 None:intergenic 35.0%
ATCGTCAAACTCAAAATGCA+AGG + chr1.2:52046580-52046599 MS.gene059021:CDS 35.0%
TAGTATGCACAGTGACAAAT+AGG - chr1.2:52046971-52046990 None:intergenic 35.0%
TAGTTGTCCTCCATTGAATT+AGG + chr1.2:52046886-52046905 MS.gene059021:intron 35.0%
TGTCAACAACGATATTGTCT+TGG - chr1.2:52046486-52046505 None:intergenic 35.0%
TTAGGAAAACGATTACGACT+AGG + chr1.2:52045350-52045369 MS.gene059021:CDS 35.0%
TTGAAACCCAAATAACAAGG+GGG - chr1.2:52046255-52046274 None:intergenic 35.0%
! ACAAATTGTTTTCGCTGTCT+GGG + chr1.2:52045419-52045438 MS.gene059021:CDS 35.0%
! GCAAAAATTGATTTAGCGAG+AGG - chr1.2:52045665-52045684 None:intergenic 35.0%
! GGAATTACTCGTGTTTTCTT+TGG + chr1.2:52045770-52045789 MS.gene059021:intron 35.0%
! GTCGTAATCGTTTTCCTAAT+CGG - chr1.2:52045349-52045368 None:intergenic 35.0%
! TACAAATTGTTTTCGCTGTC+TGG + chr1.2:52045418-52045437 MS.gene059021:CDS 35.0%
!! AGGAAGAGAAAAAAGCATTG+CGG - chr1.2:52045478-52045497 None:intergenic 35.0%
!! GATTTTGAGGGCATATTACA+AGG + chr1.2:52046828-52046847 MS.gene059021:intron 35.0%
!! GTGATTAGTCTCTGATTTGA+GGG - chr1.2:52045387-52045406 None:intergenic 35.0%
!! TAAGTTCCCCCTTGTTATTT+GGG + chr1.2:52046246-52046265 MS.gene059021:intron 35.0%
!! TGTGATTAGTCTCTGATTTG+AGG - chr1.2:52045388-52045407 None:intergenic 35.0%
!! TTGTTTTCTCTAGAGATACG+GGG + chr1.2:52046557-52046576 MS.gene059021:intron 35.0%
AAATGAAAGGAGTGGAGAGA+GGG - chr1.2:52045706-52045725 None:intergenic 40.0%
AAATGGAGATGGAAATGGTG+AGG - chr1.2:52045504-52045523 None:intergenic 40.0%
AGATAAAGTTCAACCCACCT+AGG - chr1.2:52046355-52046374 None:intergenic 40.0%
ATGCTTACCTGTTTGCATAC+AGG + chr1.2:52046119-52046138 MS.gene059021:intron 40.0%
ATGTACCTGAGGTAACAAGT+TGG + chr1.2:52046671-52046690 MS.gene059021:intron 40.0%
CAGCAAAGATTTCAGGCTTA+AGG - chr1.2:52045844-52045863 None:intergenic 40.0%
GAATCATCCTGTATGCAAAC+AGG - chr1.2:52046129-52046148 None:intergenic 40.0%
GAGTCTCTTATGTTTCATCC+TGG + chr1.2:52045578-52045597 MS.gene059021:CDS 40.0%
GCAAAGGTAGAATGGAACTT+TGG - chr1.2:52046333-52046352 None:intergenic 40.0%
GGATGAAACATAAGAGACTC+TGG - chr1.2:52045578-52045597 None:intergenic 40.0%
GTAAATGCAGCAAGCAACAT+TGG - chr1.2:52047107-52047126 None:intergenic 40.0%
GTGGAAAATGGAGATGGAAA+TGG - chr1.2:52045509-52045528 None:intergenic 40.0%
TACAGAAGGACGATAAGTTG+AGG - chr1.2:52046770-52046789 None:intergenic 40.0%
TAGTTGCAAGGTTGAAACGA+TGG - chr1.2:52045452-52045471 None:intergenic 40.0%
TGAAACAGTTGCGATGATCA+AGG + chr1.2:52046149-52046168 MS.gene059021:CDS 40.0%
TTGCTGCATTTACAGGTCAA+AGG + chr1.2:52047114-52047133 MS.gene059021:intron 40.0%
TTTAGCGAGAGGAGAATTCA+TGG - chr1.2:52045654-52045673 None:intergenic 40.0%
! ATGTTGCTTGCTGCATTTAC+AGG + chr1.2:52047107-52047126 MS.gene059021:intron 40.0%
! CAAAGGTGTGGAACAAGAAT+TGG + chr1.2:52047131-52047150 MS.gene059021:CDS 40.0%
! TGCGATGATCAAGGAACTTT+TGG + chr1.2:52046158-52046177 MS.gene059021:CDS 40.0%
! TTTCCATCTCCATTTTCCAC+CGG + chr1.2:52045509-52045528 MS.gene059021:CDS 40.0%
!! AGCAGCTTTAAGTGGACAAA+CGG + chr1.2:52047170-52047189 MS.gene059021:CDS 40.0%
!! GAAGAAGAAGCAGCTTTAAG+TGG + chr1.2:52047162-52047181 MS.gene059021:CDS 40.0%
!! GTAAGTTCCCCCTTGTTATT+TGG + chr1.2:52046245-52046264 MS.gene059021:intron 40.0%
!! TAATGCCAACTTGTTACCTC+AGG - chr1.2:52046679-52046698 None:intergenic 40.0%
AAACATACTCCTCCTTTGCC+CGG - chr1.2:52045531-52045550 None:intergenic 45.0%
AATGAAAGGAGTGGAGAGAG+GGG - chr1.2:52045705-52045724 None:intergenic 45.0%
AATTCACGATCCATGTGCTC+GGG + chr1.2:52046043-52046062 MS.gene059021:intron 45.0%
ACATCCATGACAGGTTTACC+AGG - chr1.2:52045599-52045618 None:intergenic 45.0%
CAAATCGGAAGATGCATCGT+GGG + chr1.2:52045814-52045833 MS.gene059021:CDS 45.0%
CAATTCACGATCCATGTGCT+CGG + chr1.2:52046042-52046061 MS.gene059021:intron 45.0%
CATCATCCTGTACAGTTGGT+CGG - chr1.2:52046194-52046213 None:intergenic 45.0%
CATTCTACCTTTGCCTAGGT+GGG + chr1.2:52046339-52046358 MS.gene059021:intron 45.0%
GAAATGAAAGGAGTGGAGAG+AGG - chr1.2:52045707-52045726 None:intergenic 45.0%
GCATTTACAGGTCAAAGGTG+TGG + chr1.2:52047119-52047138 MS.gene059021:intron 45.0%
GCTGATGCATTATGTACCTG+AGG + chr1.2:52046660-52046679 MS.gene059021:CDS 45.0%
GGAACAAGAATTGGATGCTG+AGG + chr1.2:52047140-52047159 MS.gene059021:CDS 45.0%
GGTAAACCTGTCATGGATGT+TGG + chr1.2:52045599-52045618 MS.gene059021:CDS 45.0%
GTTCCATTCTACCTTTGCCT+AGG + chr1.2:52046335-52046354 MS.gene059021:intron 45.0%
TCAGTGTCACCGAAGAACTT+GGG - chr1.2:52046621-52046640 None:intergenic 45.0%
TCATCCTGGTAAACCTGTCA+TGG + chr1.2:52045592-52045611 MS.gene059021:CDS 45.0%
TCTTCGGTGACACTGAAATC+AGG + chr1.2:52046625-52046644 MS.gene059021:CDS 45.0%
TTCAGTGTCACCGAAGAACT+TGG - chr1.2:52046622-52046641 None:intergenic 45.0%
! AAAATGCAAGGAGCGTGTAG+TGG + chr1.2:52046592-52046611 MS.gene059021:CDS 45.0%
! AACTGTACAGGATGATGGTG+GGG + chr1.2:52046197-52046216 MS.gene059021:CDS 45.0%
! AGGCGTACTGTTTTCCGATT+AGG + chr1.2:52045332-52045351 MS.gene059021:CDS 45.0%
! ATCGTGGATTGCTGTGTCTT+TGG - chr1.2:52045927-52045946 None:intergenic 45.0%
! CAACTGTACAGGATGATGGT+GGG + chr1.2:52046196-52046215 MS.gene059021:CDS 45.0%
! CGGGAGTATGAGATTTGTCT+AGG + chr1.2:52046062-52046081 MS.gene059021:intron 45.0%
! GATTGCTGTGTCTTTGGAAG+CGG - chr1.2:52045921-52045940 None:intergenic 45.0%
! TTCCATCTCCATTTTCCACC+GGG + chr1.2:52045510-52045529 MS.gene059021:CDS 45.0%
AAGAGACTCTGGATTTGGCG+TGG - chr1.2:52045567-52045586 None:intergenic 50.0%
AGCGAGAGGAGAATTCATGG+CGG - chr1.2:52045651-52045670 None:intergenic 50.0%
AGTTCAACCCACCTAGGCAA+AGG - chr1.2:52046349-52046368 None:intergenic 50.0%
ATCTCATACTCCCGAGCACA+TGG - chr1.2:52046056-52046075 None:intergenic 50.0%
ATGAAAGGAGTGGAGAGAGG+GGG - chr1.2:52045704-52045723 None:intergenic 50.0%
CCAAATCGGAAGATGCATCG+TGG + chr1.2:52045813-52045832 MS.gene059021:CDS 50.0%
CCACCATCATCCTGTACAGT+TGG - chr1.2:52046198-52046217 None:intergenic 50.0%
CCACCTAGGCAAAGGTAGAA+TGG - chr1.2:52046341-52046360 None:intergenic 50.0%
CCACGATGCATCTTCCGATT+TGG - chr1.2:52045816-52045835 None:intergenic 50.0%
CCATTCTACCTTTGCCTAGG+TGG + chr1.2:52046338-52046357 MS.gene059021:intron 50.0%
CGACCAACTGTACAGGATGA+TGG + chr1.2:52046192-52046211 MS.gene059021:CDS 50.0%
CGAGCACATGGATCGTGAAT+TGG - chr1.2:52046044-52046063 None:intergenic 50.0%
GCATTGCGGTTGTAGTTGCA+AGG - chr1.2:52045464-52045483 None:intergenic 50.0%
GCTTGGGAGTCTAGAAAGAG+TGG - chr1.2:52045896-52045915 None:intergenic 50.0%
GGAACGAGGGTTAGGGAAAT+CGG - chr1.2:52045630-52045649 None:intergenic 50.0%
GGTGGGGACATTGTGTATTG+TGG + chr1.2:52046213-52046232 MS.gene059021:CDS 50.0%
TAGTGGCTGCCCAAGTTCTT+CGG + chr1.2:52046609-52046628 MS.gene059021:CDS 50.0%
TCGTATCCGACCAACTGTAC+AGG + chr1.2:52046185-52046204 MS.gene059021:CDS 50.0%
TGGAGATGGAAATGGTGAGG+CGG - chr1.2:52045501-52045520 None:intergenic 50.0%
! CCAACTGTACAGGATGATGG+TGG + chr1.2:52046195-52046214 MS.gene059021:CDS 50.0%
! GAGAATTCATGGCGGAACGA+GGG - chr1.2:52045643-52045662 None:intergenic 50.0%
! GATTTGGCGTGGACTGTGTT+TGG - chr1.2:52045556-52045575 None:intergenic 50.0%
AGATGGAAATGGTGAGGCGG+AGG - chr1.2:52045498-52045517 None:intergenic 55.0%
CTCCTTTGCCCGGTGGAAAA+TGG - chr1.2:52045521-52045540 None:intergenic 55.0%
GCGCTACCAACATCCATGAC+AGG - chr1.2:52045608-52045627 None:intergenic 55.0%
TGAAAGGAGTGGAGAGAGGG+GGG - chr1.2:52045703-52045722 None:intergenic 55.0%
TGCCCGGTGGAAAATGGAGA+TGG - chr1.2:52045515-52045534 None:intergenic 55.0%
! CATTTTCCACCGGGCAAAGG+AGG + chr1.2:52045519-52045538 MS.gene059021:CDS 55.0%
! CTCCATTTTCCACCGGGCAA+AGG + chr1.2:52045516-52045535 MS.gene059021:CDS 55.0%
! GGAGAATTCATGGCGGAACG+AGG - chr1.2:52045644-52045663 None:intergenic 55.0%
! GTCTTTGGAAGCGGCAGCTT+GGG - chr1.2:52045912-52045931 None:intergenic 55.0%
! TCATGGCGGAACGAGGGTTA+GGG - chr1.2:52045637-52045656 None:intergenic 55.0%
! TGTCTTTGGAAGCGGCAGCT+TGG - chr1.2:52045913-52045932 None:intergenic 55.0%
! TTCATGGCGGAACGAGGGTT+AGG - chr1.2:52045638-52045657 None:intergenic 55.0%
CATACTCCTCCTTTGCCCGG+TGG - chr1.2:52045528-52045547 None:intergenic 60.0%
GAAAGGAGTGGAGAGAGGGG+GGG - chr1.2:52045702-52045721 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 52045320 52047197 52045320 ID=MS.gene059021
chr1.2 mRNA 52045320 52047197 52045320 ID=MS.gene059021.t1;Parent=MS.gene059021
chr1.2 exon 52045320 52045692 52045320 ID=MS.gene059021.t1.exon1;Parent=MS.gene059021.t1
chr1.2 CDS 52045320 52045692 52045320 ID=cds.MS.gene059021.t1;Parent=MS.gene059021.t1
chr1.2 exon 52045771 52045946 52045771 ID=MS.gene059021.t1.exon2;Parent=MS.gene059021.t1
chr1.2 CDS 52045771 52045946 52045771 ID=cds.MS.gene059021.t1;Parent=MS.gene059021.t1
chr1.2 exon 52046141 52046244 52046141 ID=MS.gene059021.t1.exon3;Parent=MS.gene059021.t1
chr1.2 CDS 52046141 52046244 52046141 ID=cds.MS.gene059021.t1;Parent=MS.gene059021.t1
chr1.2 exon 52046570 52046681 52046570 ID=MS.gene059021.t1.exon4;Parent=MS.gene059021.t1
chr1.2 CDS 52046570 52046681 52046570 ID=cds.MS.gene059021.t1;Parent=MS.gene059021.t1
chr1.2 exon 52047129 52047197 52047129 ID=MS.gene059021.t1.exon5;Parent=MS.gene059021.t1
chr1.2 CDS 52047129 52047197 52047129 ID=cds.MS.gene059021.t1;Parent=MS.gene059021.t1
Gene Sequence

>MS.gene059021

ATGACGGTGGTGAGGCGTACTGTTTTCCGATTAGGAAAACGATTACGACTAGGACTCTTCAATTCCCTCAAATCAGAGACTAATCACAATGATCTAAATACAAATTGTTTTCGCTGTCTGGGTGCAACGCCATCGTTTCAACCTTGCAACTACAACCGCAATGCTTTTTTCTCTTCCTCCGCCTCACCATTTCCATCTCCATTTTCCACCGGGCAAAGGAGGAGTATGTTTATCCAAACACAGTCCACGCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCTAACCCTCGTTCCGCCATGAATTCTCCTCTCGCTAAATCAATTTTTGCTATTGATGGTACTGCCCCCCCTCTCTCCACTCCTTTCATTTCTTTTATTTGTGCCTGTTTTCTGATTGTTTTTTTAATTGTTACAGGAATTACTCGTGTTTTCTTTGGATCTGATTTTGTCACTGTTACCAAATCGGAAGATGCATCGTGGGAATTCCTTAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCAGGTGAACCACTCTTTCTAGACTCCCAAGCTGCCGCTTCCAAAGACACAGCAATCCACGATGTAAGTTTTTCTCATTTCTATGCTGATATTGCTGTAATTTTATTTCAAGGAATTTGGCCTTTTACTTAAATTTCATAAAAGGTCAAATTTATTACCAATTCACGATCCATGTGCTCGGGAGTATGAGATTTGTCTAGGTTTTGACACCTTCAAGATCTCAAAACTGAATGGTATGCTTACCTGTTTGCATACAGGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATCCGACCAACTGTACAGGATGATGGTGGGGACATTGTGTATTGTGGTTTTGATCCGTAAGTTCCCCCTTGTTATTTGGGTTTCAATGTTACATGCACTTAACCTCAATGAATAATCTATACTCTTAACAAAATAGAAGTTCCAAAGTTCCATTCTACCTTTGCCTAGGTGGGTTGAACTTTATCTCATTATTTTAGGATCTCCGTGTTAAAAAATAATTGATGATATCTCATACAACAACATGCTAACAAATCATACTAAAAGTGAAATTAACCAAATTAAATGAGCAAATTTCCAAGACAATATCGTTGTTGACAATGCTAATGTTTTACATTATAGAATTCCTCTTTTACTTGTTTTTTATATGTTTGTTTTCTCTAGAGATACGGGGATCGTCAAACTCAAAATGCAAGGAGCGTGTAGTGGCTGCCCAAGTTCTTCGGTGACACTGAAATCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTAACAAGTTGGCATTATAATTTGCGATGAAACTGATCCATTTGTTGTTTCCATTTATATTTATGGTGATTGAATTGATTGAAATCCTCAACTTATCGTCCTTCTGTAATGAAGCATTTGTACCTTTCCTATGGCATTCTTAAGTTGATTTTGAGGGCATATTACAAGGATAAACTTGGAGACCAATTAACTTATAAGATATGCTAGTTGTCCTCCATTGAATTAGGTTTTCTATTTATCTTACAGGATTGGTTGCATGCAAGTTGTCGAATTTATATTAAACAGACCTATTTGTCACTGTGCATACTAAAAAGTATAGACAAAGCTGTATTGATTATTGAGTTTTTATTTAAAGCAGCATTAAAAGGCTGAGTTCCAATTTATATGAATTGTTCAACTATATAATATTGAGAAACAATCTTCCAATGTTGCTTGCTGCATTTACAGGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGAAGAAGAAGCAGCTTTAAGTGGACAAACGGAGTAG
Protein sequence

>MS.gene059021.t1

MTVVRRTVFRLGKRLRLGLFNSLKSETNHNDLNTNCFRCLGATPSFQPCNYNRNAFFSSSASPFPSPFSTGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAAASKDTAIHDDDSETVAMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEEEEAALSGQTE