AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072671


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072671.t1 MTR_7g109970 97.423 194 5 0 1 194 1 194 1.45e-137 382
MS.gene072671.t1 MTR_7g109970 94.845 194 5 1 1 194 1 189 2.05e-131 366
MS.gene072671.t1 MTR_7g109970 96.933 163 5 0 1 163 1 163 3.24e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072671.t1 AT4G01900 64.737 190 64 2 2 188 3 192 3.64e-79 234

Find 56 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAAGGGTTTGTTGAAAA+TGG 0.110086 7.3:+5101132 MS.gene072671:intron
AAGCATTTCCGTTGCTTCTT+AGG 0.201591 7.3:-5099628 None:intergenic
GAGCAGGCTGAGAGGATGGC+TGG 0.291038 7.3:+5102546 MS.gene072671:CDS
TGTCAAGGGGTTTGGTGCTC+AGG 0.292542 7.3:+5101180 MS.gene072671:CDS
GGCAGTGATAAACAAAATTA+TGG 0.303869 7.3:+5102122 MS.gene072671:CDS
ACTTTGTAAAACTTGGATTC+AGG 0.343647 7.3:-5099775 None:intergenic
ATGACGCTGAAGCTTGAAAA+AGG 0.344708 7.3:-5099566 None:intergenic
GGCTTCAACTTTGTAAAACT+TGG 0.345055 7.3:-5099782 None:intergenic
TTGAAGGGTTTGTTGAAAAT+GGG 0.351307 7.3:+5101133 MS.gene072671:intron
ATTAGAGCTCAAAACCTTCC+TGG 0.371130 7.3:+5099665 MS.gene072671:CDS
ATTATGGAGACGGCAAGAAC+TGG 0.371236 7.3:+5102138 MS.gene072671:CDS
ATTCTTATTACATCAGATAC+AGG 0.377029 7.3:-5102408 None:intergenic
GTATCTGATGTCAAGGGGTT+TGG 0.410939 7.3:+5101172 MS.gene072671:CDS
GCAGGCTGAGAGGATGGCTG+GGG 0.412639 7.3:+5102548 MS.gene072671:CDS
CTCAGGTGAGCGTGGGGAGC+AGG 0.426072 7.3:+5102530 MS.gene072671:intron
AGCGTCATTCGCAAGCGTTT+CGG 0.427268 7.3:+5099581 MS.gene072671:CDS
TTCAAACCGTTGAACACGTT+CGG 0.428080 7.3:-5099518 None:intergenic
ACGGCAAGAACTGGGGAGAT+TGG 0.438088 7.3:+5102147 MS.gene072671:CDS
GTCAAGGGGTTTGGTGCTCA+GGG 0.446794 7.3:+5101181 MS.gene072671:CDS
GGGTGGCTCAAAAGAGAGGC+AGG 0.447663 7.3:+5101201 MS.gene072671:CDS
ACAAAGTTGAAGCCATTCTC+AGG 0.467569 7.3:+5099791 MS.gene072671:CDS
GAGAATCCCTCAGGTTTCTT+CGG 0.476128 7.3:+5099917 MS.gene072671:CDS
CAAAGTTAAAATGGAAATAG+TGG 0.476633 7.3:+5101676 MS.gene072671:CDS
AGCAGGCTGAGAGGATGGCT+GGG 0.478955 7.3:+5102547 MS.gene072671:CDS
AAGAAGCAACGGAAATGCTT+CGG 0.517017 7.3:+5099631 MS.gene072671:CDS
GCGAAACCGAACGTGTTCAA+CGG 0.522571 7.3:+5099512 MS.gene072671:CDS
TTATGGAGACGGCAAGAACT+GGG 0.538464 7.3:+5102139 MS.gene072671:CDS
TGGGGAGCAGGCTGAGAGGA+TGG 0.538555 7.3:+5102542 MS.gene072671:CDS
CAGGCCATGGAGAATCCCTC+AGG 0.546227 7.3:+5099908 MS.gene072671:intron
TTGTTGAAAATGGGAATTCG+TGG 0.546383 7.3:+5101142 MS.gene072671:CDS
TGTCACTGTATCTGATGTCA+AGG 0.549422 7.3:+5101165 MS.gene072671:CDS
TACGAATTCTCAGGTGAGCG+TGG 0.552687 7.3:+5102522 MS.gene072671:intron
GTCACTGTATCTGATGTCAA+GGG 0.559409 7.3:+5101166 MS.gene072671:CDS
CAGGCTGAGAGGATGGCTGG+GGG 0.559678 7.3:+5102549 MS.gene072671:CDS
ACGAATTCTCAGGTGAGCGT+GGG 0.562826 7.3:+5102523 MS.gene072671:intron
GATAAACAAAATTATGGAGA+CGG 0.573347 7.3:+5102128 MS.gene072671:CDS
AGAGTGTTATAACCTGAGAA+TGG 0.584237 7.3:-5099803 None:intergenic
AAGGGGTTTGGTGCTCAGGG+TGG 0.584971 7.3:+5101184 MS.gene072671:CDS
CTCAGGGTGGCTCAAAAGAG+AGG 0.595032 7.3:+5101197 MS.gene072671:CDS
AGAACTGGGGAGATTGGTGA+TGG 0.606984 7.3:+5102153 MS.gene072671:CDS
GGTGGCTCAAAAGAGAGGCA+GGG 0.611036 7.3:+5101202 MS.gene072671:CDS
GAAACCTGAGGGATTCTCCA+TGG 0.612179 7.3:-5099912 None:intergenic
AATAGTGGTGAGAAAAGACC+AGG 0.614772 7.3:+5101691 MS.gene072671:CDS
GAAAGGAAATCGAACCAGGA+AGG 0.619778 7.3:-5099679 None:intergenic
CGAATTCTCAGGTGAGCGTG+GGG 0.630631 7.3:+5102524 MS.gene072671:intron
TCACTGTATCTGATGTCAAG+GGG 0.633367 7.3:+5101167 MS.gene072671:CDS
TTCTTATTACATCAGATACA+GGG 0.641858 7.3:-5102407 None:intergenic
AATGTGGTCCTAAGAAGCAA+CGG 0.643539 7.3:+5099620 MS.gene072671:CDS
GATGTAATAAGAATCCGCAC+AGG 0.649812 7.3:+5102417 MS.gene072671:CDS
AGCGTGGGGAGCAGGCTGAG+AGG 0.654625 7.3:+5102538 MS.gene072671:CDS
TATGGAGACGGCAAGAACTG+GGG 0.666410 7.3:+5102140 MS.gene072671:CDS
GGCTCAAAAGAGAGGCAGGG+AGG 0.670235 7.3:+5101205 MS.gene072671:CDS
GTATTACCGAAGAAACCTGA+GGG 0.672298 7.3:-5099923 None:intergenic
GGAGCAAATGGTTACCTGTG+CGG 0.676931 7.3:-5102431 None:intergenic
TGTATTACCGAAGAAACCTG+AGG 0.679907 7.3:-5099924 None:intergenic
AGATTCTTCTCATCGCAATG+TGG 0.698371 7.3:+5099604 MS.gene072671:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAGTTAATAAATTAATTAT+TGG + chr7.3:5100229-5100248 MS.gene072671:intron 10.0%
!! TTTCATAATAAAATAGTTTA+AGG + chr7.3:5102273-5102292 MS.gene072671:intron 10.0%
!!! TTTTTATTGTAAAATTTGAA+GGG + chr7.3:5101118-5101137 MS.gene072671:intron 10.0%
!!! TTTTTTATTGTAAAATTTGA+AGG + chr7.3:5101117-5101136 MS.gene072671:intron 10.0%
!! AGATTCTAATAAAAAATATC+AGG - chr7.3:5102254-5102273 None:intergenic 15.0%
!! ATAATAAAATAGTTTAAGGA+GGG + chr7.3:5102277-5102296 MS.gene072671:intron 15.0%
!! TCAGTCAATAAATTAATTAT+TGG + chr7.3:5100201-5100220 MS.gene072671:intron 15.0%
!!! AGTTTTATCATTAATAGAAT+GGG + chr7.3:5100939-5100958 MS.gene072671:intron 15.0%
!!! ATGTTAATTGTTTAGAATAT+TGG - chr7.3:5101777-5101796 None:intergenic 15.0%
!!! ATTTTGTTTGTAATTAAAAG+TGG - chr7.3:5102052-5102071 None:intergenic 15.0%
!!! TAGTTTTATCATTAATAGAA+TGG + chr7.3:5100938-5100957 MS.gene072671:intron 15.0%
!!! TGTTAATTGTTTAGAATATT+GGG - chr7.3:5101776-5101795 None:intergenic 15.0%
!! AAAGTTACAAACATAAAACA+CGG - chr7.3:5101482-5101501 None:intergenic 20.0%
!! AATAGTTTAGTGATGAAATA+TGG - chr7.3:5101353-5101372 None:intergenic 20.0%
!! CATAATAAAATAGTTTAAGG+AGG + chr7.3:5102276-5102295 MS.gene072671:intron 20.0%
!! TAAAACTACTAAACTCAATT+TGG + chr7.3:5102342-5102361 MS.gene072671:intron 20.0%
!! TAACTGTTATGTTAATTAGT+TGG + chr7.3:5100262-5100281 MS.gene072671:intron 20.0%
!!! AATTACATTTTTCCTTCATT+TGG + chr7.3:5101530-5101549 MS.gene072671:intron 20.0%
!!! ATTACATTTTTCCTTCATTT+GGG + chr7.3:5101531-5101550 MS.gene072671:intron 20.0%
!!! TATATATCATGCATTTTTTC+AGG + chr7.3:5102095-5102114 MS.gene072671:intron 20.0%
!!! TCTTGTTATTTTCACTAAAT+CGG + chr7.3:5099997-5100016 MS.gene072671:intron 20.0%
! AAATTCAGTATATTAGCAGA+AGG - chr7.3:5101100-5101119 None:intergenic 25.0%
! ACAAATTCATGTTAAGAGTT+TGG + chr7.3:5101293-5101312 MS.gene072671:intron 25.0%
! ATATAGATGAACATAGCAAT+AGG - chr7.3:5099704-5099723 None:intergenic 25.0%
! ATTCTTATTACATCAGATAC+AGG - chr7.3:5102411-5102430 None:intergenic 25.0%
! ATTTGTCTTAGAAGTTAACA+AGG - chr7.3:5101279-5101298 None:intergenic 25.0%
! CAAAGTTAAAATGGAAATAG+TGG + chr7.3:5101676-5101695 MS.gene072671:CDS 25.0%
! GATAAACAAAATTATGGAGA+CGG + chr7.3:5102128-5102147 MS.gene072671:CDS 25.0%
! GCAAATTCAGTTAACTATTA+TGG + chr7.3:5100081-5100100 MS.gene072671:intron 25.0%
! GTTAGTATTTATAGCCATAA+GGG + chr7.3:5100424-5100443 MS.gene072671:intron 25.0%
! GTTGTATTGTTCTTAATGAA+GGG + chr7.3:5100746-5100765 MS.gene072671:intron 25.0%
! TAACTAACACTGTTAATCTA+AGG - chr7.3:5100168-5100187 None:intergenic 25.0%
! TGGAAATAAATTATACGTCA+TGG + chr7.3:5102207-5102226 MS.gene072671:intron 25.0%
! TTAGTATTTATAGCCATAAG+GGG + chr7.3:5100425-5100444 MS.gene072671:intron 25.0%
! TTCTTATTACATCAGATACA+GGG - chr7.3:5102410-5102429 None:intergenic 25.0%
! TTTGTCTTAGAAGTTAACAA+GGG - chr7.3:5101278-5101297 None:intergenic 25.0%
!! CATATATGTATTTTTCATCC+AGG + chr7.3:5101064-5101083 MS.gene072671:intron 25.0%
!! CTAAATTCTGTTAGTGTTTT+TGG + chr7.3:5100115-5100134 MS.gene072671:intron 25.0%
!! CTATTGAAAATGAAACCTTT+TGG - chr7.3:5100842-5100861 None:intergenic 25.0%
!! TATTGCTACAAATACTTTTG+TGG + chr7.3:5100892-5100911 MS.gene072671:intron 25.0%
!! TTTTGTTGCCAAAGTTAAAA+TGG + chr7.3:5101667-5101686 MS.gene072671:CDS 25.0%
!!! AAAGAGCAAGTGTTTTTTTA+AGG - chr7.3:5101404-5101423 None:intergenic 25.0%
!!! AGTTTTAAATACGAATTCTC+AGG + chr7.3:5102513-5102532 MS.gene072671:intron 25.0%
!!! CACTATTTCCATTTTAACTT+TGG - chr7.3:5101678-5101697 None:intergenic 25.0%
!!! TATGTTTTTAGAGAATTCAC+TGG - chr7.3:5102455-5102474 None:intergenic 25.0%
!!! TCTTTTTTTCTACTTCCAAA+AGG + chr7.3:5100824-5100843 MS.gene072671:intron 25.0%
AAATGTTAGCGCACAAATTT+AGG + chr7.3:5101435-5101454 MS.gene072671:intron 30.0%
AAGTACAAACTCAAAAGTCA+TGG - chr7.3:5100989-5101008 None:intergenic 30.0%
AATTCATGTTAAGAGTTTGG+AGG + chr7.3:5101296-5101315 MS.gene072671:intron 30.0%
ACTTTGTAAAACTTGGATTC+AGG - chr7.3:5099778-5099797 None:intergenic 30.0%
GGCAGTGATAAACAAAATTA+TGG + chr7.3:5102122-5102141 MS.gene072671:CDS 30.0%
GGTTAGTATTTATAGCCATA+AGG + chr7.3:5100423-5100442 MS.gene072671:intron 30.0%
GGTTGTATTGTTCTTAATGA+AGG + chr7.3:5100745-5100764 MS.gene072671:intron 30.0%
TAGTATTTATAGCCATAAGG+GGG + chr7.3:5100426-5100445 MS.gene072671:intron 30.0%
TATGATAAGACCATTACCAT+TGG + chr7.3:5101885-5101904 MS.gene072671:intron 30.0%
TCATTAAGAACAATACAACC+TGG - chr7.3:5100745-5100764 None:intergenic 30.0%
TTATTTCCAGCAAAAGATGT+TGG - chr7.3:5102196-5102215 None:intergenic 30.0%
TTCTTGACATTGTTTACAAG+TGG + chr7.3:5100045-5100064 MS.gene072671:intron 30.0%
! ATAGAGCACTAAATTTAGGT+CGG - chr7.3:5101252-5101271 None:intergenic 30.0%
! GTGAATAGAGCACTAAATTT+AGG - chr7.3:5101256-5101275 None:intergenic 30.0%
! TGATGGCAAAATTTTCTGTA+AGG + chr7.3:5102170-5102189 MS.gene072671:intron 30.0%
! TTCAATAGATTTTCAGCAGT+TGG + chr7.3:5100854-5100873 MS.gene072671:intron 30.0%
!! AATAATTGGTTTGGTCAATG+CGG + chr7.3:5101039-5101058 MS.gene072671:intron 30.0%
!! ATTTTTCCTTCATTTGGGAT+TGG + chr7.3:5101536-5101555 MS.gene072671:intron 30.0%
!! GTAAAGCACAAACTTTTTCT+TGG + chr7.3:5101861-5101880 MS.gene072671:intron 30.0%
!! TTGAAGGGTTTGTTGAAAAT+GGG + chr7.3:5101133-5101152 MS.gene072671:intron 30.0%
!! TTTGAAGGGTTTGTTGAAAA+TGG + chr7.3:5101132-5101151 MS.gene072671:intron 30.0%
!!! AAGGTTTTGAGCTCTAATTT+TGG - chr7.3:5099663-5099682 None:intergenic 30.0%
!!! AGGTTTTGAGCTCTAATTTT+GGG - chr7.3:5099662-5099681 None:intergenic 30.0%
!!! GTTTTTTTGGCTAGATCTAT+TGG + chr7.3:5101833-5101852 MS.gene072671:intron 30.0%
AAAAAAAGAGAGACGCTGAA+TGG - chr7.3:5100813-5100832 None:intergenic 35.0%
AAACAATGTCAAGAAACCAC+AGG - chr7.3:5100040-5100059 None:intergenic 35.0%
ACCAATTATTCGAGAGGTAA+AGG - chr7.3:5101029-5101048 None:intergenic 35.0%
ACCTTTACCTCTCGAATAAT+TGG + chr7.3:5101025-5101044 MS.gene072671:intron 35.0%
ACTAGGATAGGATAACTATC+AGG + chr7.3:5100481-5100500 MS.gene072671:intron 35.0%
ATGACAATGTCAGTTGTCAA+TGG + chr7.3:5101795-5101814 MS.gene072671:intron 35.0%
CAGACTAGGTTAATCTGTTA+AGG + chr7.3:5100371-5100390 MS.gene072671:intron 35.0%
CTAGGATAGGATAACTATCA+GGG + chr7.3:5100482-5100501 MS.gene072671:intron 35.0%
GATGAACATAGCAATAGGAA+AGG - chr7.3:5099699-5099718 None:intergenic 35.0%
GGCTTCAACTTTGTAAAACT+TGG - chr7.3:5099785-5099804 None:intergenic 35.0%
TACAAACCAATCCCAAATGA+AGG - chr7.3:5101545-5101564 None:intergenic 35.0%
TACCTCTCGAATAATTGGTT+TGG + chr7.3:5101030-5101049 MS.gene072671:intron 35.0%
TGAATGGAATCAATTTGGAC+CGG - chr7.3:5100797-5100816 None:intergenic 35.0%
TGAGTACGATTTATCAGACT+AGG + chr7.3:5100357-5100376 MS.gene072671:intron 35.0%
TTGACATTGTTTACAAGTGG+TGG + chr7.3:5100048-5100067 MS.gene072671:intron 35.0%
TTGGATAAACCCTCTATTCT+AGG + chr7.3:5100449-5100468 MS.gene072671:intron 35.0%
TTGTTGAAAATGGGAATTCG+TGG + chr7.3:5101142-5101161 MS.gene072671:CDS 35.0%
! AGAGTGTTATAACCTGAGAA+TGG - chr7.3:5099806-5099825 None:intergenic 35.0%
! ATGTCAGTTGTCAATGGATT+TGG + chr7.3:5101801-5101820 MS.gene072671:intron 35.0%
! TGACATTTGGTAGTAATCAC+TGG + chr7.3:5101719-5101738 MS.gene072671:intron 35.0%
! TGTCAGTTGTCAATGGATTT+GGG + chr7.3:5101802-5101821 MS.gene072671:intron 35.0%
! TTTCTTGTTTGAACGTGAAC+AGG + chr7.3:5099889-5099908 MS.gene072671:intron 35.0%
!! TGCTTCTAGAATATGCTCAT+TGG + chr7.3:5100513-5100532 MS.gene072671:intron 35.0%
!! TTGGGATTGGTTTGTATACT+TGG + chr7.3:5101549-5101568 MS.gene072671:intron 35.0%
!!! TCATGCATTTTTTCAGGTTG+AGG + chr7.3:5102101-5102120 MS.gene072671:intron 35.0%
!!! TTGGGTCTTCTCAGTTTTTT+TGG + chr7.3:5101820-5101839 MS.gene072671:intron 35.0%
AACGTAGGAACCAATGGTAA+TGG - chr7.3:5101898-5101917 None:intergenic 40.0%
AACTAAGCGCCTAGAATAGA+GGG - chr7.3:5100461-5100480 None:intergenic 40.0%
AAGAAGCAACGGAAATGCTT+CGG + chr7.3:5099631-5099650 MS.gene072671:CDS 40.0%
AAGCATTTCCGTTGCTTCTT+AGG - chr7.3:5099631-5099650 None:intergenic 40.0%
AATAGTGGTGAGAAAAGACC+AGG + chr7.3:5101691-5101710 MS.gene072671:CDS 40.0%
AATGTGGTCCTAAGAAGCAA+CGG + chr7.3:5099620-5099639 MS.gene072671:CDS 40.0%
ACAAAGTTGAAGCCATTCTC+AGG + chr7.3:5099791-5099810 MS.gene072671:CDS 40.0%
ACATAAAACACGGCTGAAGT+TGG - chr7.3:5101472-5101491 None:intergenic 40.0%
AGAGAATTCACTGGAGCAAA+TGG - chr7.3:5102446-5102465 None:intergenic 40.0%
AGATTCTTCTCATCGCAATG+TGG + chr7.3:5099604-5099623 MS.gene072671:CDS 40.0%
AGTATATTAGCAGAAGGCCA+AGG - chr7.3:5101094-5101113 None:intergenic 40.0%
ATAGGAAAGGAAATCGAACC+AGG - chr7.3:5099686-5099705 None:intergenic 40.0%
ATGACGCTGAAGCTTGAAAA+AGG - chr7.3:5099569-5099588 None:intergenic 40.0%
ATTAGAGCTCAAAACCTTCC+TGG + chr7.3:5099665-5099684 MS.gene072671:CDS 40.0%
ATTCTAGGCGCTTAGTTACT+AGG + chr7.3:5100464-5100483 MS.gene072671:intron 40.0%
ATTTATAGCCATAAGGGGGT+TGG + chr7.3:5100430-5100449 MS.gene072671:intron 40.0%
CACCACTGAACTGAAGAAAA+CGG - chr7.3:5101994-5102013 None:intergenic 40.0%
CATAAAACACGGCTGAAGTT+GGG - chr7.3:5101471-5101490 None:intergenic 40.0%
GAAGAATACACCATCAGTGA+AGG - chr7.3:5101621-5101640 None:intergenic 40.0%
GAATGGAATCAATTTGGACC+GGG - chr7.3:5100796-5100815 None:intergenic 40.0%
GACCAAACCAATTATTCGAG+AGG - chr7.3:5101035-5101054 None:intergenic 40.0%
GACGCTGAATGGAATCAATT+TGG - chr7.3:5100802-5100821 None:intergenic 40.0%
GATGTAATAAGAATCCGCAC+AGG + chr7.3:5102417-5102436 MS.gene072671:CDS 40.0%
GTATATTAGCAGAAGGCCAA+GGG - chr7.3:5101093-5101112 None:intergenic 40.0%
GTATTACCGAAGAAACCTGA+GGG - chr7.3:5099926-5099945 None:intergenic 40.0%
GTCACTGTATCTGATGTCAA+GGG + chr7.3:5101166-5101185 MS.gene072671:CDS 40.0%
GTCATCTATGAGTTCAGAAG+AGG - chr7.3:5101926-5101945 None:intergenic 40.0%
TAACCTTGAGAGCTTTCTCA+AGG - chr7.3:5100408-5100427 None:intergenic 40.0%
TAACTAAGCGCCTAGAATAG+AGG - chr7.3:5100462-5100481 None:intergenic 40.0%
TCACTGTATCTGATGTCAAG+GGG + chr7.3:5101167-5101186 MS.gene072671:CDS 40.0%
TGTATTACCGAAGAAACCTG+AGG - chr7.3:5099927-5099946 None:intergenic 40.0%
TGTCACTGTATCTGATGTCA+AGG + chr7.3:5101165-5101184 MS.gene072671:CDS 40.0%
TTCAAACCGTTGAACACGTT+CGG - chr7.3:5099521-5099540 None:intergenic 40.0%
! AACCGTTTTCTTCAGTTCAG+TGG + chr7.3:5101989-5102008 MS.gene072671:intron 40.0%
! AATGGGTTCATTACCCTCTT+GGG + chr7.3:5100956-5100975 MS.gene072671:intron 40.0%
! ACTGATGGTGTATTCTTCAC+AGG + chr7.3:5101623-5101642 MS.gene072671:intron 40.0%
! CGAAGTGCTTTAGTCTAGAT+AGG + chr7.3:5100681-5100700 MS.gene072671:intron 40.0%
! TATTCGAGAGGTAAAGGTAC+TGG - chr7.3:5101023-5101042 None:intergenic 40.0%
!! ATTCGAGAGGTAAAGGTACT+GGG - chr7.3:5101022-5101041 None:intergenic 40.0%
ACATCCTTGTCCTTCACTGA+TGG + chr7.3:5101608-5101627 MS.gene072671:intron 45.0%
ACCATAAGCGCCCTTCTAAA+GGG - chr7.3:5100575-5100594 None:intergenic 45.0%
AGAACAATACAACCTGGAGC+AGG - chr7.3:5100739-5100758 None:intergenic 45.0%
AGCTAAGGCGACGTCTTTAT+AGG - chr7.3:5100544-5100563 None:intergenic 45.0%
AGGACACAACGCCATTCATA+AGG - chr7.3:5100607-5100626 None:intergenic 45.0%
AGGCGCTTAGTTACTAGGAT+AGG + chr7.3:5100469-5100488 MS.gene072671:intron 45.0%
ATGCCTTGAGAAAGCTCTCA+AGG + chr7.3:5100402-5100421 MS.gene072671:intron 45.0%
ATGGCGTTGTGTCCTTTATC+TGG + chr7.3:5100612-5100631 MS.gene072671:intron 45.0%
ATTATGGAGACGGCAAGAAC+TGG + chr7.3:5102138-5102157 MS.gene072671:CDS 45.0%
CTACCAAATGTCAACACACC+TGG - chr7.3:5101712-5101731 None:intergenic 45.0%
GAAAGGAAATCGAACCAGGA+AGG - chr7.3:5099682-5099701 None:intergenic 45.0%
GAGAATCCCTCAGGTTTCTT+CGG + chr7.3:5099917-5099936 MS.gene072671:CDS 45.0%
GCTGAAAACGTAGGAACCAA+TGG - chr7.3:5101904-5101923 None:intergenic 45.0%
GGACACAACGCCATTCATAA+GGG - chr7.3:5100606-5100625 None:intergenic 45.0%
GTATCTGATGTCAAGGGGTT+TGG + chr7.3:5101172-5101191 MS.gene072671:CDS 45.0%
GTCACTTGAGCCCTTATGAA+TGG + chr7.3:5100593-5100612 MS.gene072671:intron 45.0%
TACACCATCAGTGAAGGACA+AGG - chr7.3:5101615-5101634 None:intergenic 45.0%
TCAGAAGAGGCTGAAAACGT+AGG - chr7.3:5101913-5101932 None:intergenic 45.0%
TGCATTGTCTTTGATGCCTG+TGG + chr7.3:5100021-5100040 MS.gene072671:intron 45.0%
TGGCGTTGTGTCCTTTATCT+GGG + chr7.3:5100613-5100632 MS.gene072671:intron 45.0%
TTATGGAGACGGCAAGAACT+GGG + chr7.3:5102139-5102158 MS.gene072671:CDS 45.0%
TTCACGTGTTTCCCTTGCTT+CGG + chr7.3:5100713-5100732 MS.gene072671:intron 45.0%
TTGAGAGCTTTCTCAAGGCA+TGG - chr7.3:5100403-5100422 None:intergenic 45.0%
! AGACCAGGTGTGTTGACATT+TGG + chr7.3:5101706-5101725 MS.gene072671:intron 45.0%
! GAATGGGTTCATTACCCTCT+TGG + chr7.3:5100955-5100974 MS.gene072671:intron 45.0%
! GTAAGGCCAACATCTTTTGC+TGG + chr7.3:5102187-5102206 MS.gene072671:intron 45.0%
! GTCCTTTATCTGGGTTTTCC+CGG + chr7.3:5100622-5100641 MS.gene072671:intron 45.0%
! TTTTTCATCCAGGAAGCCCT+TGG + chr7.3:5101074-5101093 MS.gene072671:intron 45.0%
!! TTCGAGAGGTAAAGGTACTG+GGG - chr7.3:5101021-5101040 None:intergenic 45.0%
!! AAAAAAAAAAATTATGAAAA+AGG - chr7.3:5099954-5099973 None:intergenic 5.0%
AAAACACGGCTGAAGTTGGG+TGG - chr7.3:5101468-5101487 None:intergenic 50.0%
ACGAATTCTCAGGTGAGCGT+GGG + chr7.3:5102523-5102542 MS.gene072671:intron 50.0%
AGAACTGGGGAGATTGGTGA+TGG + chr7.3:5102153-5102172 MS.gene072671:CDS 50.0%
AGCGCACAAATTTAGGCCTG+TGG + chr7.3:5101442-5101461 MS.gene072671:intron 50.0%
AGCGTCATTCGCAAGCGTTT+CGG + chr7.3:5099581-5099600 MS.gene072671:CDS 50.0%
CAATTTGGACCGGGAAAACC+CGG - chr7.3:5100787-5100806 None:intergenic 50.0%
CACCGGGAAAACCCAGATAA+AGG - chr7.3:5100627-5100646 None:intergenic 50.0%
GAAACCTGAGGGATTCTCCA+TGG - chr7.3:5099915-5099934 None:intergenic 50.0%
GACCATAAGCGCCCTTCTAA+AGG - chr7.3:5100576-5100595 None:intergenic 50.0%
GCGAAACCGAACGTGTTCAA+CGG + chr7.3:5099512-5099531 MS.gene072671:CDS 50.0%
GGAGCAAATGGTTACCTGTG+CGG - chr7.3:5102434-5102453 None:intergenic 50.0%
GGGTTTATCCAACCCCCTTA+TGG - chr7.3:5100441-5100460 None:intergenic 50.0%
GTTTGAACGTGAACAGGCCA+TGG + chr7.3:5099895-5099914 MS.gene072671:intron 50.0%
TAAAGGGCCGAAGCAAGCTA+AGG - chr7.3:5100559-5100578 None:intergenic 50.0%
TACGAATTCTCAGGTGAGCG+TGG + chr7.3:5102522-5102541 MS.gene072671:intron 50.0%
TATGGAGACGGCAAGAACTG+GGG + chr7.3:5102140-5102159 MS.gene072671:CDS 50.0%
TCATGGATCTCGTCCCAAGA+GGG - chr7.3:5100972-5100991 None:intergenic 50.0%
! CTTGCTTCGGCCCTTTAGAA+GGG + chr7.3:5100562-5100581 MS.gene072671:intron 50.0%
AAGCACTTCGCCTTGTCCCA+AGG - chr7.3:5100671-5100690 None:intergenic 55.0%
ACGGCAAGAACTGGGGAGAT+TGG + chr7.3:5102147-5102166 MS.gene072671:CDS 55.0%
CGAATTCTCAGGTGAGCGTG+GGG + chr7.3:5102524-5102543 MS.gene072671:intron 55.0%
CTCAGGGTGGCTCAAAAGAG+AGG + chr7.3:5101197-5101216 MS.gene072671:CDS 55.0%
GAGAGGCAGGGAGGTAAGTA+TGG + chr7.3:5101214-5101233 MS.gene072671:intron 55.0%
GCTTGCTTCGGCCCTTTAGA+AGG + chr7.3:5100561-5100580 MS.gene072671:intron 55.0%
GGTGGCTCAAAAGAGAGGCA+GGG + chr7.3:5101202-5101221 MS.gene072671:CDS 55.0%
GTCATGGATCTCGTCCCAAG+AGG - chr7.3:5100973-5100992 None:intergenic 55.0%
TTGTCCCAAGGCTCGTGCTT+GGG - chr7.3:5100659-5100678 None:intergenic 55.0%
!! GACGTCGCCTTAGCTTGCTT+CGG + chr7.3:5100549-5100568 MS.gene072671:intron 55.0%
!! GCCCTTTAGAAGGGCGCTTA+TGG + chr7.3:5100571-5100590 MS.gene072671:intron 55.0%
!! GTCAAGGGGTTTGGTGCTCA+GGG + chr7.3:5101181-5101200 MS.gene072671:CDS 55.0%
!! TGTCAAGGGGTTTGGTGCTC+AGG + chr7.3:5101180-5101199 MS.gene072671:CDS 55.0%
ACCGGGAAAACCCGGATACG+GGG - chr7.3:5100779-5100798 None:intergenic 60.0%
AGCAGGCTGAGAGGATGGCT+GGG + chr7.3:5102547-5102566 MS.gene072671:CDS 60.0%
CAAGCACGAGCCTTGGGACA+AGG + chr7.3:5100658-5100677 MS.gene072671:intron 60.0%
CAGGCCATGGAGAATCCCTC+AGG + chr7.3:5099908-5099927 MS.gene072671:intron 60.0%
CTTGTCCCAAGGCTCGTGCT+TGG - chr7.3:5100660-5100679 None:intergenic 60.0%
GACCGGGAAAACCCGGATAC+GGG - chr7.3:5100780-5100799 None:intergenic 60.0%
GGACCGGGAAAACCCGGATA+CGG - chr7.3:5100781-5100800 None:intergenic 60.0%
GGCTCAAAAGAGAGGCAGGG+AGG + chr7.3:5101205-5101224 MS.gene072671:CDS 60.0%
GGGTGGCTCAAAAGAGAGGC+AGG + chr7.3:5101201-5101220 MS.gene072671:CDS 60.0%
TGTCCCAAGGCTCGTGCTTG+GGG - chr7.3:5100658-5100677 None:intergenic 60.0%
!! AAGGGGTTTGGTGCTCAGGG+TGG + chr7.3:5101184-5101203 MS.gene072671:CDS 60.0%
ACCTGGAGCAGGCCGAAGCA+AGG - chr7.3:5100728-5100747 None:intergenic 65.0%
CAGGCTGAGAGGATGGCTGG+GGG + chr7.3:5102549-5102568 MS.gene072671:CDS 65.0%
CCTGGAGCAGGCCGAAGCAA+GGG - chr7.3:5100727-5100746 None:intergenic 65.0%
GAGCAGGCTGAGAGGATGGC+TGG + chr7.3:5102546-5102565 MS.gene072671:CDS 65.0%
GCAGAAGGCCAAGGGCTTCC+TGG - chr7.3:5101085-5101104 None:intergenic 65.0%
GCAGGCTGAGAGGATGGCTG+GGG + chr7.3:5102548-5102567 MS.gene072671:CDS 65.0%
GGCTGAAGTTGGGTGGCCAC+AGG - chr7.3:5101461-5101480 None:intergenic 65.0%
GTCCCAAGGCTCGTGCTTGG+GGG - chr7.3:5100657-5100676 None:intergenic 65.0%
TCCCAAGGCTCGTGCTTGGG+GGG - chr7.3:5100656-5100675 None:intergenic 65.0%
TGCTTGGGGGGCTTGTGCAC+CGG - chr7.3:5100644-5100663 None:intergenic 65.0%
TGGGGAGCAGGCTGAGAGGA+TGG + chr7.3:5102542-5102561 MS.gene072671:CDS 65.0%
! GCCCCGTATCCGGGTTTTCC+CGG + chr7.3:5100775-5100794 MS.gene072671:intron 65.0%
!! AGGGCACTGAGCCCCGTATC+CGG + chr7.3:5100765-5100784 MS.gene072671:intron 65.0%
AGCCCCCCAAGCACGAGCCT+TGG + chr7.3:5100651-5100670 MS.gene072671:intron 70.0%
AGCGTGGGGAGCAGGCTGAG+AGG + chr7.3:5102538-5102557 MS.gene072671:CDS 70.0%
CCCTTGCTTCGGCCTGCTCC+AGG + chr7.3:5100724-5100743 MS.gene072671:intron 70.0%
CTCAGGTGAGCGTGGGGAGC+AGG + chr7.3:5102530-5102549 MS.gene072671:intron 70.0%
GCCCCCCAAGCACGAGCCTT+GGG + chr7.3:5100652-5100671 MS.gene072671:intron 70.0%
GCTTGGGGGGCTTGTGCACC+GGG - chr7.3:5100643-5100662 None:intergenic 70.0%
!! GGGCACTGAGCCCCGTATCC+GGG + chr7.3:5100766-5100785 MS.gene072671:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 5099500 5102596 5099500 ID=MS.gene072671
chr7.3 mRNA 5099500 5102596 5099500 ID=MS.gene072671.t1;Parent=MS.gene072671
chr7.3 exon 5099500 5099686 5099500 ID=MS.gene072671.t1.exon1;Parent=MS.gene072671.t1
chr7.3 CDS 5099500 5099686 5099500 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5099767 5099812 5099767 ID=MS.gene072671.t1.exon2;Parent=MS.gene072671.t1
chr7.3 CDS 5099767 5099812 5099767 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5099911 5099938 5099911 ID=MS.gene072671.t1.exon3;Parent=MS.gene072671.t1
chr7.3 CDS 5099911 5099938 5099911 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5101139 5101226 5101139 ID=MS.gene072671.t1.exon4;Parent=MS.gene072671.t1
chr7.3 CDS 5101139 5101226 5101139 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5101645 5101712 5101645 ID=MS.gene072671.t1.exon5;Parent=MS.gene072671.t1
chr7.3 CDS 5101645 5101712 5101645 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5102117 5102186 5102117 ID=MS.gene072671.t1.exon6;Parent=MS.gene072671.t1
chr7.3 CDS 5102117 5102186 5102117 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5102403 5102438 5102403 ID=MS.gene072671.t1.exon7;Parent=MS.gene072671.t1
chr7.3 CDS 5102403 5102438 5102403 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
chr7.3 exon 5102535 5102596 5102535 ID=MS.gene072671.t1.exon8;Parent=MS.gene072671.t1
chr7.3 CDS 5102535 5102596 5102535 ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1
Gene Sequence

>MS.gene072671

ATGGCTTTGATTGCGAAACCGAACGTGTTCAACGGTTTGAATTTTAATATCAATGAAACTCAAATTCCTTTTTCAAGCTTCAGCGTCATTCGCAAGCGTTTCGGAGATTCTTCTCATCGCAATGTGGTCCTAAGAAGCAACGGAAATGCTTCGGTTCTTCCCAAAATTAGAGCTCAAAACCTTCCTGGTTCGATTTCCTTTCCTATTGCTATGTTCATCTATATTCATACTCAAATCTTGTTGCTAAATCTTTGATCTCTCTTTTAGACTATGTTCCTGAATCCAAGTTTTACAAAGTTGAAGCCATTCTCAGGTTATAACACTCTTCTTTTGCGTTTTTTTGTGAAATCAGTTGAATTCAGTTCTTTCTTGATGCTTATGTTGTTCAATTTCTTGTTTGAACGTGAACAGGCCATGGAGAATCCCTCAGGTTTCTTCGGTAATACATTTTCCTTTTTCATAATTTTTTTTTTTGCATGTCTAAAGTAGACTGTGATTCTTGTTATTTTCACTAAATCGGATGCATTGTCTTTGATGCCTGTGGTTTCTTGACATTGTTTACAAGTGGTGGTTGACTCATTGCAAATTCAGTTAACTATTATGGTATTTTCTTGACTAAATTCTGTTAGTGTTTTTGGACTGAATTCTGCTTGTTAGTTAGTTAGCCTTAGATTAACAGTGTTAGTTAATTAGTTTCAAAGTCAGTCAATAAATTAATTATTGGCAAAGTCAGTTAATAAATTAATTATTGGCAAAGTCAGTTAACTGTTATGTTAATTAGTTGGCATTTCGTTAGCACACATGCTGTGTATATTAATTATGTTTCTTAGTGAATTCATTCAATTGTGTACTTGCAGTGAGTACGATTTATCAGACTAGGTTAATCTGTTAAGGTCAATGCCATGCCTTGAGAAAGCTCTCAAGGTTAGTATTTATAGCCATAAGGGGGTTGGATAAACCCTCTATTCTAGGCGCTTAGTTACTAGGATAGGATAACTATCAGGGATTCTAGCTGCTTCTAGAATATGCTCATTGGCAGTGCCTATAAAGACGTCGCCTTAGCTTGCTTCGGCCCTTTAGAAGGGCGCTTATGGTCACTTGAGCCCTTATGAATGGCGTTGTGTCCTTTATCTGGGTTTTCCCGGTGCACAAGCCCCCCAAGCACGAGCCTTGGGACAAGGCGAAGTGCTTTAGTCTAGATAGGAGACATGTTTTCACGTGTTTCCCTTGCTTCGGCCTGCTCCAGGTTGTATTGTTCTTAATGAAGGGCACTGAGCCCCGTATCCGGGTTTTCCCGGTCCAAATTGATTCCATTCAGCGTCTCTCTTTTTTTCTACTTCCAAAAGGTTTCATTTTCAATAGATTTTCAGCAGTTGGTGCATAAGATTGTGTTATTGCTACAAATACTTTTGTGGTCAAATAAGCAAAAGTATTGCATTAGTTTTATCATTAATAGAATGGGTTCATTACCCTCTTGGGACGAGATCCATGACTTTTGAGTTTGTACTTGTACTTGTACCCCAGTACCTTTACCTCTCGAATAATTGGTTTGGTCAATGCGGCTCATATATGTATTTTTCATCCAGGAAGCCCTTGGCCTTCTGCTAATATACTGAATTTTTTATTGTAAAATTTGAAGGGTTTGTTGAAAATGGGAATTCGTGGTGTCACTGTATCTGATGTCAAGGGGTTTGGTGCTCAGGGTGGCTCAAAAGAGAGGCAGGGAGGTAAGTATGGTGCTGATCTTAACCGACCTAAATTTAGTGCTCTATTCACCCTTGTTAACTTCTAAGACAAATTCATGTTAAGAGTTTGGAGGAGTTTTTGTTATCATCATACATTTTTGAAGTCCATATTTCATCACTAAACTATTTGTTATAGTAAATTTTGTTGAATTTGTGCCTTAAAAAAACACTTGCTCTTTCTTTTTTTACTAAATGTTAGCGCACAAATTTAGGCCTGTGGCCACCCAACTTCAGCCGTGTTTTATGTTTGTAACTTTTGTTCTGTTATATATAATATAGTTCAAGAATTACATTTTTCCTTCATTTGGGATTGGTTTGTATACTTGGTTTTGTGCATATTACGTATAGATCACATGCTCACTTACATCCTTGTCCTTCACTGATGGTGTATTCTTCACAGGCTCTGAATTTTCTGAAGACAATTTTGTTGCCAAAGTTAAAATGGAAATAGTGGTGAGAAAAGACCAGGTGTGTTGACATTTGGTAGTAATCACTGGCATCATGATTTGTGTGCTACAATCTTAAATGCCCAATATTCTAAACAATTAACATGACAATGTCAGTTGTCAATGGATTTGGGTCTTCTCAGTTTTTTTGGCTAGATCTATTGGTGAGAGTAAAGCACAAACTTTTTCTTGGATATGATAAGACCATTACCATTGGTTCCTACGTTTTCAGCCTCTTCTGAACTCATAGATGACTAGTCACTATTTCAAAGTGTTTGCATTTCAAGAGATTAAACAAAACCGTTTTCTTCAGTTCAGTGGTGTTTGAATTATTTTGTAGTTCGAGTAAAACTTCATACCACTTTTAATTACAAACAAAATATTGCTTTTTGCAGCATATCTAATATATATCATGCATTTTTTCAGGTTGAGGCAGTGATAAACAAAATTATGGAGACGGCAAGAACTGGGGAGATTGGTGATGGCAAAATTTTCTGTAAGGCCAACATCTTTTGCTGGAAATAAATTATACGTCATGGTCTGTTTTGAGCTGATACAAACCTGATATTTTTTATTAGAATCTTTCATAATAAAATAGTTTAAGGAGGGTATAACTATAAGAGTTACAGTACAATATCTGAATTCAAAATGTAAAACTACTAAACTCAATTTGGAACTGTATCATATTTCTAATAGAACTTTGATTGTGCAGTGATCCCTGTATCTGATGTAATAAGAATCCGCACAGGTAACCATTTGCTCCAGTGAATTCTCTAAAAACATAAAATGTTAATATTTTTGTGTAGTCAGCATATGTACTCAAGTTTTAAATACGAATTCTCAGGTGAGCGTGGGGAGCAGGCTGAGAGGATGGCTGGGGGACTAACTGACGCGTTGTATGTTTGA

Protein sequence

>MS.gene072671.t1

MALIAKPNVFNGLNFNINETQIPFSSFSVIRKRFGDSSHRNVVLRSNGNASVLPKIRAQNLPDYVPESKFYKVEAILRPWRIPQVSSGLLKMGIRGVTVSDVKGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKDQVEAVINKIMETARTGEIGDGKIFLIPVSDVIRIRTGERGEQAERMAGGLTDALYV