Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072671.t1 | AAK16221.1 | 99.5 | 194 | 1 | 0 | 1 | 194 | 1 | 194 | 9.90E-102 | 379.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072671.t1 | Q9ZST4 | 64.7 | 190 | 64 | 2 | 2 | 188 | 3 | 192 | 2.0e-58 | 226.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072671.t1 | Q9ARI4 | 99.5 | 194 | 1 | 0 | 1 | 194 | 1 | 194 | 7.2e-102 | 379.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049260 | MS.gene072671 | 0.805478 | 1.31E-49 | -1.69E-46 |
MS.gene049758 | MS.gene072671 | 0.803644 | 3.16E-49 | -1.69E-46 |
MS.gene050020 | MS.gene072671 | 0.81218 | 4.83E-51 | -1.69E-46 |
MS.gene050227 | MS.gene072671 | 0.809264 | 2.06E-50 | -1.69E-46 |
MS.gene050330 | MS.gene072671 | -0.819432 | 1.17E-52 | -1.69E-46 |
MS.gene050438 | MS.gene072671 | 0.991825 | 9.49E-190 | -1.69E-46 |
MS.gene050442 | MS.gene072671 | 0.815884 | 7.35E-52 | -1.69E-46 |
MS.gene050558 | MS.gene072671 | 0.812673 | 3.77E-51 | -1.69E-46 |
MS.gene050586 | MS.gene072671 | 0.826448 | 2.70E-54 | -1.69E-46 |
MS.gene050719 | MS.gene072671 | 0.840853 | 6.77E-58 | -1.69E-46 |
MS.gene050721 | MS.gene072671 | 0.838446 | 2.86E-57 | -1.69E-46 |
MS.gene050724 | MS.gene072671 | 0.847874 | 8.77E-60 | -1.69E-46 |
MS.gene050815 | MS.gene072671 | 0.817608 | 3.02E-52 | -1.69E-46 |
MS.gene050820 | MS.gene072671 | 0.800485 | 1.41E-48 | -1.69E-46 |
MS.gene050959 | MS.gene072671 | 0.805741 | 1.15E-49 | -1.69E-46 |
MS.gene051265 | MS.gene072671 | 0.810176 | 1.31E-50 | -1.69E-46 |
MS.gene051860 | MS.gene072671 | 0.817472 | 3.24E-52 | -1.69E-46 |
MS.gene052020 | MS.gene072671 | 0.826069 | 3.32E-54 | -1.69E-46 |
MS.gene052613 | MS.gene072671 | 0.8247 | 7.00E-54 | -1.69E-46 |
MS.gene052665 | MS.gene072671 | 0.808412 | 3.14E-50 | -1.69E-46 |
MS.gene052896 | MS.gene072671 | 0.807366 | 5.24E-50 | -1.69E-46 |
MS.gene053074 | MS.gene072671 | 0.834912 | 2.28E-56 | -1.69E-46 |
MS.gene053630 | MS.gene072671 | 0.830336 | 3.11E-55 | -1.69E-46 |
MS.gene053836 | MS.gene072671 | 0.82181 | 3.31E-53 | -1.69E-46 |
MS.gene054184 | MS.gene072671 | 0.815378 | 9.53E-52 | -1.69E-46 |
MS.gene054185 | MS.gene072671 | 0.820268 | 7.50E-53 | -1.69E-46 |
MS.gene054833 | MS.gene072671 | 0.802025 | 6.82E-49 | -1.69E-46 |
MS.gene056069 | MS.gene072671 | -0.818162 | 2.26E-52 | -1.69E-46 |
MS.gene056760 | MS.gene072671 | 0.808636 | 2.81E-50 | -1.69E-46 |
MS.gene057260 | MS.gene072671 | 0.827189 | 1.80E-54 | -1.69E-46 |
MS.gene057395 | MS.gene072671 | 0.80048 | 1.41E-48 | -1.69E-46 |
MS.gene058168 | MS.gene072671 | 0.83698 | 6.81E-57 | -1.69E-46 |
MS.gene058906 | MS.gene072671 | 0.838113 | 3.49E-57 | -1.69E-46 |
MS.gene059124 | MS.gene072671 | 0.812117 | 4.98E-51 | -1.69E-46 |
MS.gene059937 | MS.gene072671 | 0.800005 | 1.77E-48 | -1.69E-46 |
MS.gene060322 | MS.gene072671 | 0.813087 | 3.06E-51 | -1.69E-46 |
MS.gene060803 | MS.gene072671 | 0.805566 | 1.25E-49 | -1.69E-46 |
MS.gene060994 | MS.gene072671 | 0.8069 | 6.57E-50 | -1.69E-46 |
MS.gene061000 | MS.gene072671 | 0.809016 | 2.33E-50 | -1.69E-46 |
MS.gene06114 | MS.gene072671 | 0.803913 | 2.78E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072671.t1 | MTR_7g109970 | 97.423 | 194 | 5 | 0 | 1 | 194 | 1 | 194 | 1.45e-137 | 382 |
MS.gene072671.t1 | MTR_7g109970 | 94.845 | 194 | 5 | 1 | 1 | 194 | 1 | 189 | 2.05e-131 | 366 |
MS.gene072671.t1 | MTR_7g109970 | 96.933 | 163 | 5 | 0 | 1 | 163 | 1 | 163 | 3.24e-114 | 323 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072671.t1 | AT4G01900 | 64.737 | 190 | 64 | 2 | 2 | 188 | 3 | 192 | 3.64e-79 | 234 |
Find 56 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAAGGGTTTGTTGAAAA+TGG | 0.110086 | 7.3:+5101132 | MS.gene072671:intron |
AAGCATTTCCGTTGCTTCTT+AGG | 0.201591 | 7.3:-5099628 | None:intergenic |
GAGCAGGCTGAGAGGATGGC+TGG | 0.291038 | 7.3:+5102546 | MS.gene072671:CDS |
TGTCAAGGGGTTTGGTGCTC+AGG | 0.292542 | 7.3:+5101180 | MS.gene072671:CDS |
GGCAGTGATAAACAAAATTA+TGG | 0.303869 | 7.3:+5102122 | MS.gene072671:CDS |
ACTTTGTAAAACTTGGATTC+AGG | 0.343647 | 7.3:-5099775 | None:intergenic |
ATGACGCTGAAGCTTGAAAA+AGG | 0.344708 | 7.3:-5099566 | None:intergenic |
GGCTTCAACTTTGTAAAACT+TGG | 0.345055 | 7.3:-5099782 | None:intergenic |
TTGAAGGGTTTGTTGAAAAT+GGG | 0.351307 | 7.3:+5101133 | MS.gene072671:intron |
ATTAGAGCTCAAAACCTTCC+TGG | 0.371130 | 7.3:+5099665 | MS.gene072671:CDS |
ATTATGGAGACGGCAAGAAC+TGG | 0.371236 | 7.3:+5102138 | MS.gene072671:CDS |
ATTCTTATTACATCAGATAC+AGG | 0.377029 | 7.3:-5102408 | None:intergenic |
GTATCTGATGTCAAGGGGTT+TGG | 0.410939 | 7.3:+5101172 | MS.gene072671:CDS |
GCAGGCTGAGAGGATGGCTG+GGG | 0.412639 | 7.3:+5102548 | MS.gene072671:CDS |
CTCAGGTGAGCGTGGGGAGC+AGG | 0.426072 | 7.3:+5102530 | MS.gene072671:intron |
AGCGTCATTCGCAAGCGTTT+CGG | 0.427268 | 7.3:+5099581 | MS.gene072671:CDS |
TTCAAACCGTTGAACACGTT+CGG | 0.428080 | 7.3:-5099518 | None:intergenic |
ACGGCAAGAACTGGGGAGAT+TGG | 0.438088 | 7.3:+5102147 | MS.gene072671:CDS |
GTCAAGGGGTTTGGTGCTCA+GGG | 0.446794 | 7.3:+5101181 | MS.gene072671:CDS |
GGGTGGCTCAAAAGAGAGGC+AGG | 0.447663 | 7.3:+5101201 | MS.gene072671:CDS |
ACAAAGTTGAAGCCATTCTC+AGG | 0.467569 | 7.3:+5099791 | MS.gene072671:CDS |
GAGAATCCCTCAGGTTTCTT+CGG | 0.476128 | 7.3:+5099917 | MS.gene072671:CDS |
CAAAGTTAAAATGGAAATAG+TGG | 0.476633 | 7.3:+5101676 | MS.gene072671:CDS |
AGCAGGCTGAGAGGATGGCT+GGG | 0.478955 | 7.3:+5102547 | MS.gene072671:CDS |
AAGAAGCAACGGAAATGCTT+CGG | 0.517017 | 7.3:+5099631 | MS.gene072671:CDS |
GCGAAACCGAACGTGTTCAA+CGG | 0.522571 | 7.3:+5099512 | MS.gene072671:CDS |
TTATGGAGACGGCAAGAACT+GGG | 0.538464 | 7.3:+5102139 | MS.gene072671:CDS |
TGGGGAGCAGGCTGAGAGGA+TGG | 0.538555 | 7.3:+5102542 | MS.gene072671:CDS |
CAGGCCATGGAGAATCCCTC+AGG | 0.546227 | 7.3:+5099908 | MS.gene072671:intron |
TTGTTGAAAATGGGAATTCG+TGG | 0.546383 | 7.3:+5101142 | MS.gene072671:CDS |
TGTCACTGTATCTGATGTCA+AGG | 0.549422 | 7.3:+5101165 | MS.gene072671:CDS |
TACGAATTCTCAGGTGAGCG+TGG | 0.552687 | 7.3:+5102522 | MS.gene072671:intron |
GTCACTGTATCTGATGTCAA+GGG | 0.559409 | 7.3:+5101166 | MS.gene072671:CDS |
CAGGCTGAGAGGATGGCTGG+GGG | 0.559678 | 7.3:+5102549 | MS.gene072671:CDS |
ACGAATTCTCAGGTGAGCGT+GGG | 0.562826 | 7.3:+5102523 | MS.gene072671:intron |
GATAAACAAAATTATGGAGA+CGG | 0.573347 | 7.3:+5102128 | MS.gene072671:CDS |
AGAGTGTTATAACCTGAGAA+TGG | 0.584237 | 7.3:-5099803 | None:intergenic |
AAGGGGTTTGGTGCTCAGGG+TGG | 0.584971 | 7.3:+5101184 | MS.gene072671:CDS |
CTCAGGGTGGCTCAAAAGAG+AGG | 0.595032 | 7.3:+5101197 | MS.gene072671:CDS |
AGAACTGGGGAGATTGGTGA+TGG | 0.606984 | 7.3:+5102153 | MS.gene072671:CDS |
GGTGGCTCAAAAGAGAGGCA+GGG | 0.611036 | 7.3:+5101202 | MS.gene072671:CDS |
GAAACCTGAGGGATTCTCCA+TGG | 0.612179 | 7.3:-5099912 | None:intergenic |
AATAGTGGTGAGAAAAGACC+AGG | 0.614772 | 7.3:+5101691 | MS.gene072671:CDS |
GAAAGGAAATCGAACCAGGA+AGG | 0.619778 | 7.3:-5099679 | None:intergenic |
CGAATTCTCAGGTGAGCGTG+GGG | 0.630631 | 7.3:+5102524 | MS.gene072671:intron |
TCACTGTATCTGATGTCAAG+GGG | 0.633367 | 7.3:+5101167 | MS.gene072671:CDS |
TTCTTATTACATCAGATACA+GGG | 0.641858 | 7.3:-5102407 | None:intergenic |
AATGTGGTCCTAAGAAGCAA+CGG | 0.643539 | 7.3:+5099620 | MS.gene072671:CDS |
GATGTAATAAGAATCCGCAC+AGG | 0.649812 | 7.3:+5102417 | MS.gene072671:CDS |
AGCGTGGGGAGCAGGCTGAG+AGG | 0.654625 | 7.3:+5102538 | MS.gene072671:CDS |
TATGGAGACGGCAAGAACTG+GGG | 0.666410 | 7.3:+5102140 | MS.gene072671:CDS |
GGCTCAAAAGAGAGGCAGGG+AGG | 0.670235 | 7.3:+5101205 | MS.gene072671:CDS |
GTATTACCGAAGAAACCTGA+GGG | 0.672298 | 7.3:-5099923 | None:intergenic |
GGAGCAAATGGTTACCTGTG+CGG | 0.676931 | 7.3:-5102431 | None:intergenic |
TGTATTACCGAAGAAACCTG+AGG | 0.679907 | 7.3:-5099924 | None:intergenic |
AGATTCTTCTCATCGCAATG+TGG | 0.698371 | 7.3:+5099604 | MS.gene072671:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCAGTTAATAAATTAATTAT+TGG | + | chr7.3:5100229-5100248 | MS.gene072671:intron | 10.0% |
!! | TTTCATAATAAAATAGTTTA+AGG | + | chr7.3:5102273-5102292 | MS.gene072671:intron | 10.0% |
!!! | TTTTTATTGTAAAATTTGAA+GGG | + | chr7.3:5101118-5101137 | MS.gene072671:intron | 10.0% |
!!! | TTTTTTATTGTAAAATTTGA+AGG | + | chr7.3:5101117-5101136 | MS.gene072671:intron | 10.0% |
!! | AGATTCTAATAAAAAATATC+AGG | - | chr7.3:5102254-5102273 | None:intergenic | 15.0% |
!! | ATAATAAAATAGTTTAAGGA+GGG | + | chr7.3:5102277-5102296 | MS.gene072671:intron | 15.0% |
!! | TCAGTCAATAAATTAATTAT+TGG | + | chr7.3:5100201-5100220 | MS.gene072671:intron | 15.0% |
!!! | AGTTTTATCATTAATAGAAT+GGG | + | chr7.3:5100939-5100958 | MS.gene072671:intron | 15.0% |
!!! | ATGTTAATTGTTTAGAATAT+TGG | - | chr7.3:5101777-5101796 | None:intergenic | 15.0% |
!!! | ATTTTGTTTGTAATTAAAAG+TGG | - | chr7.3:5102052-5102071 | None:intergenic | 15.0% |
!!! | TAGTTTTATCATTAATAGAA+TGG | + | chr7.3:5100938-5100957 | MS.gene072671:intron | 15.0% |
!!! | TGTTAATTGTTTAGAATATT+GGG | - | chr7.3:5101776-5101795 | None:intergenic | 15.0% |
!! | AAAGTTACAAACATAAAACA+CGG | - | chr7.3:5101482-5101501 | None:intergenic | 20.0% |
!! | AATAGTTTAGTGATGAAATA+TGG | - | chr7.3:5101353-5101372 | None:intergenic | 20.0% |
!! | CATAATAAAATAGTTTAAGG+AGG | + | chr7.3:5102276-5102295 | MS.gene072671:intron | 20.0% |
!! | TAAAACTACTAAACTCAATT+TGG | + | chr7.3:5102342-5102361 | MS.gene072671:intron | 20.0% |
!! | TAACTGTTATGTTAATTAGT+TGG | + | chr7.3:5100262-5100281 | MS.gene072671:intron | 20.0% |
!!! | AATTACATTTTTCCTTCATT+TGG | + | chr7.3:5101530-5101549 | MS.gene072671:intron | 20.0% |
!!! | ATTACATTTTTCCTTCATTT+GGG | + | chr7.3:5101531-5101550 | MS.gene072671:intron | 20.0% |
!!! | TATATATCATGCATTTTTTC+AGG | + | chr7.3:5102095-5102114 | MS.gene072671:intron | 20.0% |
!!! | TCTTGTTATTTTCACTAAAT+CGG | + | chr7.3:5099997-5100016 | MS.gene072671:intron | 20.0% |
! | AAATTCAGTATATTAGCAGA+AGG | - | chr7.3:5101100-5101119 | None:intergenic | 25.0% |
! | ACAAATTCATGTTAAGAGTT+TGG | + | chr7.3:5101293-5101312 | MS.gene072671:intron | 25.0% |
! | ATATAGATGAACATAGCAAT+AGG | - | chr7.3:5099704-5099723 | None:intergenic | 25.0% |
! | ATTCTTATTACATCAGATAC+AGG | - | chr7.3:5102411-5102430 | None:intergenic | 25.0% |
! | ATTTGTCTTAGAAGTTAACA+AGG | - | chr7.3:5101279-5101298 | None:intergenic | 25.0% |
! | CAAAGTTAAAATGGAAATAG+TGG | + | chr7.3:5101676-5101695 | MS.gene072671:CDS | 25.0% |
! | GATAAACAAAATTATGGAGA+CGG | + | chr7.3:5102128-5102147 | MS.gene072671:CDS | 25.0% |
! | GCAAATTCAGTTAACTATTA+TGG | + | chr7.3:5100081-5100100 | MS.gene072671:intron | 25.0% |
! | GTTAGTATTTATAGCCATAA+GGG | + | chr7.3:5100424-5100443 | MS.gene072671:intron | 25.0% |
! | GTTGTATTGTTCTTAATGAA+GGG | + | chr7.3:5100746-5100765 | MS.gene072671:intron | 25.0% |
! | TAACTAACACTGTTAATCTA+AGG | - | chr7.3:5100168-5100187 | None:intergenic | 25.0% |
! | TGGAAATAAATTATACGTCA+TGG | + | chr7.3:5102207-5102226 | MS.gene072671:intron | 25.0% |
! | TTAGTATTTATAGCCATAAG+GGG | + | chr7.3:5100425-5100444 | MS.gene072671:intron | 25.0% |
! | TTCTTATTACATCAGATACA+GGG | - | chr7.3:5102410-5102429 | None:intergenic | 25.0% |
! | TTTGTCTTAGAAGTTAACAA+GGG | - | chr7.3:5101278-5101297 | None:intergenic | 25.0% |
!! | CATATATGTATTTTTCATCC+AGG | + | chr7.3:5101064-5101083 | MS.gene072671:intron | 25.0% |
!! | CTAAATTCTGTTAGTGTTTT+TGG | + | chr7.3:5100115-5100134 | MS.gene072671:intron | 25.0% |
!! | CTATTGAAAATGAAACCTTT+TGG | - | chr7.3:5100842-5100861 | None:intergenic | 25.0% |
!! | TATTGCTACAAATACTTTTG+TGG | + | chr7.3:5100892-5100911 | MS.gene072671:intron | 25.0% |
!! | TTTTGTTGCCAAAGTTAAAA+TGG | + | chr7.3:5101667-5101686 | MS.gene072671:CDS | 25.0% |
!!! | AAAGAGCAAGTGTTTTTTTA+AGG | - | chr7.3:5101404-5101423 | None:intergenic | 25.0% |
!!! | AGTTTTAAATACGAATTCTC+AGG | + | chr7.3:5102513-5102532 | MS.gene072671:intron | 25.0% |
!!! | CACTATTTCCATTTTAACTT+TGG | - | chr7.3:5101678-5101697 | None:intergenic | 25.0% |
!!! | TATGTTTTTAGAGAATTCAC+TGG | - | chr7.3:5102455-5102474 | None:intergenic | 25.0% |
!!! | TCTTTTTTTCTACTTCCAAA+AGG | + | chr7.3:5100824-5100843 | MS.gene072671:intron | 25.0% |
AAATGTTAGCGCACAAATTT+AGG | + | chr7.3:5101435-5101454 | MS.gene072671:intron | 30.0% | |
AAGTACAAACTCAAAAGTCA+TGG | - | chr7.3:5100989-5101008 | None:intergenic | 30.0% | |
AATTCATGTTAAGAGTTTGG+AGG | + | chr7.3:5101296-5101315 | MS.gene072671:intron | 30.0% | |
ACTTTGTAAAACTTGGATTC+AGG | - | chr7.3:5099778-5099797 | None:intergenic | 30.0% | |
GGCAGTGATAAACAAAATTA+TGG | + | chr7.3:5102122-5102141 | MS.gene072671:CDS | 30.0% | |
GGTTAGTATTTATAGCCATA+AGG | + | chr7.3:5100423-5100442 | MS.gene072671:intron | 30.0% | |
GGTTGTATTGTTCTTAATGA+AGG | + | chr7.3:5100745-5100764 | MS.gene072671:intron | 30.0% | |
TAGTATTTATAGCCATAAGG+GGG | + | chr7.3:5100426-5100445 | MS.gene072671:intron | 30.0% | |
TATGATAAGACCATTACCAT+TGG | + | chr7.3:5101885-5101904 | MS.gene072671:intron | 30.0% | |
TCATTAAGAACAATACAACC+TGG | - | chr7.3:5100745-5100764 | None:intergenic | 30.0% | |
TTATTTCCAGCAAAAGATGT+TGG | - | chr7.3:5102196-5102215 | None:intergenic | 30.0% | |
TTCTTGACATTGTTTACAAG+TGG | + | chr7.3:5100045-5100064 | MS.gene072671:intron | 30.0% | |
! | ATAGAGCACTAAATTTAGGT+CGG | - | chr7.3:5101252-5101271 | None:intergenic | 30.0% |
! | GTGAATAGAGCACTAAATTT+AGG | - | chr7.3:5101256-5101275 | None:intergenic | 30.0% |
! | TGATGGCAAAATTTTCTGTA+AGG | + | chr7.3:5102170-5102189 | MS.gene072671:intron | 30.0% |
! | TTCAATAGATTTTCAGCAGT+TGG | + | chr7.3:5100854-5100873 | MS.gene072671:intron | 30.0% |
!! | AATAATTGGTTTGGTCAATG+CGG | + | chr7.3:5101039-5101058 | MS.gene072671:intron | 30.0% |
!! | ATTTTTCCTTCATTTGGGAT+TGG | + | chr7.3:5101536-5101555 | MS.gene072671:intron | 30.0% |
!! | GTAAAGCACAAACTTTTTCT+TGG | + | chr7.3:5101861-5101880 | MS.gene072671:intron | 30.0% |
!! | TTGAAGGGTTTGTTGAAAAT+GGG | + | chr7.3:5101133-5101152 | MS.gene072671:intron | 30.0% |
!! | TTTGAAGGGTTTGTTGAAAA+TGG | + | chr7.3:5101132-5101151 | MS.gene072671:intron | 30.0% |
!!! | AAGGTTTTGAGCTCTAATTT+TGG | - | chr7.3:5099663-5099682 | None:intergenic | 30.0% |
!!! | AGGTTTTGAGCTCTAATTTT+GGG | - | chr7.3:5099662-5099681 | None:intergenic | 30.0% |
!!! | GTTTTTTTGGCTAGATCTAT+TGG | + | chr7.3:5101833-5101852 | MS.gene072671:intron | 30.0% |
AAAAAAAGAGAGACGCTGAA+TGG | - | chr7.3:5100813-5100832 | None:intergenic | 35.0% | |
AAACAATGTCAAGAAACCAC+AGG | - | chr7.3:5100040-5100059 | None:intergenic | 35.0% | |
ACCAATTATTCGAGAGGTAA+AGG | - | chr7.3:5101029-5101048 | None:intergenic | 35.0% | |
ACCTTTACCTCTCGAATAAT+TGG | + | chr7.3:5101025-5101044 | MS.gene072671:intron | 35.0% | |
ACTAGGATAGGATAACTATC+AGG | + | chr7.3:5100481-5100500 | MS.gene072671:intron | 35.0% | |
ATGACAATGTCAGTTGTCAA+TGG | + | chr7.3:5101795-5101814 | MS.gene072671:intron | 35.0% | |
CAGACTAGGTTAATCTGTTA+AGG | + | chr7.3:5100371-5100390 | MS.gene072671:intron | 35.0% | |
CTAGGATAGGATAACTATCA+GGG | + | chr7.3:5100482-5100501 | MS.gene072671:intron | 35.0% | |
GATGAACATAGCAATAGGAA+AGG | - | chr7.3:5099699-5099718 | None:intergenic | 35.0% | |
GGCTTCAACTTTGTAAAACT+TGG | - | chr7.3:5099785-5099804 | None:intergenic | 35.0% | |
TACAAACCAATCCCAAATGA+AGG | - | chr7.3:5101545-5101564 | None:intergenic | 35.0% | |
TACCTCTCGAATAATTGGTT+TGG | + | chr7.3:5101030-5101049 | MS.gene072671:intron | 35.0% | |
TGAATGGAATCAATTTGGAC+CGG | - | chr7.3:5100797-5100816 | None:intergenic | 35.0% | |
TGAGTACGATTTATCAGACT+AGG | + | chr7.3:5100357-5100376 | MS.gene072671:intron | 35.0% | |
TTGACATTGTTTACAAGTGG+TGG | + | chr7.3:5100048-5100067 | MS.gene072671:intron | 35.0% | |
TTGGATAAACCCTCTATTCT+AGG | + | chr7.3:5100449-5100468 | MS.gene072671:intron | 35.0% | |
TTGTTGAAAATGGGAATTCG+TGG | + | chr7.3:5101142-5101161 | MS.gene072671:CDS | 35.0% | |
! | AGAGTGTTATAACCTGAGAA+TGG | - | chr7.3:5099806-5099825 | None:intergenic | 35.0% |
! | ATGTCAGTTGTCAATGGATT+TGG | + | chr7.3:5101801-5101820 | MS.gene072671:intron | 35.0% |
! | TGACATTTGGTAGTAATCAC+TGG | + | chr7.3:5101719-5101738 | MS.gene072671:intron | 35.0% |
! | TGTCAGTTGTCAATGGATTT+GGG | + | chr7.3:5101802-5101821 | MS.gene072671:intron | 35.0% |
! | TTTCTTGTTTGAACGTGAAC+AGG | + | chr7.3:5099889-5099908 | MS.gene072671:intron | 35.0% |
!! | TGCTTCTAGAATATGCTCAT+TGG | + | chr7.3:5100513-5100532 | MS.gene072671:intron | 35.0% |
!! | TTGGGATTGGTTTGTATACT+TGG | + | chr7.3:5101549-5101568 | MS.gene072671:intron | 35.0% |
!!! | TCATGCATTTTTTCAGGTTG+AGG | + | chr7.3:5102101-5102120 | MS.gene072671:intron | 35.0% |
!!! | TTGGGTCTTCTCAGTTTTTT+TGG | + | chr7.3:5101820-5101839 | MS.gene072671:intron | 35.0% |
AACGTAGGAACCAATGGTAA+TGG | - | chr7.3:5101898-5101917 | None:intergenic | 40.0% | |
AACTAAGCGCCTAGAATAGA+GGG | - | chr7.3:5100461-5100480 | None:intergenic | 40.0% | |
AAGAAGCAACGGAAATGCTT+CGG | + | chr7.3:5099631-5099650 | MS.gene072671:CDS | 40.0% | |
AAGCATTTCCGTTGCTTCTT+AGG | - | chr7.3:5099631-5099650 | None:intergenic | 40.0% | |
AATAGTGGTGAGAAAAGACC+AGG | + | chr7.3:5101691-5101710 | MS.gene072671:CDS | 40.0% | |
AATGTGGTCCTAAGAAGCAA+CGG | + | chr7.3:5099620-5099639 | MS.gene072671:CDS | 40.0% | |
ACAAAGTTGAAGCCATTCTC+AGG | + | chr7.3:5099791-5099810 | MS.gene072671:CDS | 40.0% | |
ACATAAAACACGGCTGAAGT+TGG | - | chr7.3:5101472-5101491 | None:intergenic | 40.0% | |
AGAGAATTCACTGGAGCAAA+TGG | - | chr7.3:5102446-5102465 | None:intergenic | 40.0% | |
AGATTCTTCTCATCGCAATG+TGG | + | chr7.3:5099604-5099623 | MS.gene072671:CDS | 40.0% | |
AGTATATTAGCAGAAGGCCA+AGG | - | chr7.3:5101094-5101113 | None:intergenic | 40.0% | |
ATAGGAAAGGAAATCGAACC+AGG | - | chr7.3:5099686-5099705 | None:intergenic | 40.0% | |
ATGACGCTGAAGCTTGAAAA+AGG | - | chr7.3:5099569-5099588 | None:intergenic | 40.0% | |
ATTAGAGCTCAAAACCTTCC+TGG | + | chr7.3:5099665-5099684 | MS.gene072671:CDS | 40.0% | |
ATTCTAGGCGCTTAGTTACT+AGG | + | chr7.3:5100464-5100483 | MS.gene072671:intron | 40.0% | |
ATTTATAGCCATAAGGGGGT+TGG | + | chr7.3:5100430-5100449 | MS.gene072671:intron | 40.0% | |
CACCACTGAACTGAAGAAAA+CGG | - | chr7.3:5101994-5102013 | None:intergenic | 40.0% | |
CATAAAACACGGCTGAAGTT+GGG | - | chr7.3:5101471-5101490 | None:intergenic | 40.0% | |
GAAGAATACACCATCAGTGA+AGG | - | chr7.3:5101621-5101640 | None:intergenic | 40.0% | |
GAATGGAATCAATTTGGACC+GGG | - | chr7.3:5100796-5100815 | None:intergenic | 40.0% | |
GACCAAACCAATTATTCGAG+AGG | - | chr7.3:5101035-5101054 | None:intergenic | 40.0% | |
GACGCTGAATGGAATCAATT+TGG | - | chr7.3:5100802-5100821 | None:intergenic | 40.0% | |
GATGTAATAAGAATCCGCAC+AGG | + | chr7.3:5102417-5102436 | MS.gene072671:CDS | 40.0% | |
GTATATTAGCAGAAGGCCAA+GGG | - | chr7.3:5101093-5101112 | None:intergenic | 40.0% | |
GTATTACCGAAGAAACCTGA+GGG | - | chr7.3:5099926-5099945 | None:intergenic | 40.0% | |
GTCACTGTATCTGATGTCAA+GGG | + | chr7.3:5101166-5101185 | MS.gene072671:CDS | 40.0% | |
GTCATCTATGAGTTCAGAAG+AGG | - | chr7.3:5101926-5101945 | None:intergenic | 40.0% | |
TAACCTTGAGAGCTTTCTCA+AGG | - | chr7.3:5100408-5100427 | None:intergenic | 40.0% | |
TAACTAAGCGCCTAGAATAG+AGG | - | chr7.3:5100462-5100481 | None:intergenic | 40.0% | |
TCACTGTATCTGATGTCAAG+GGG | + | chr7.3:5101167-5101186 | MS.gene072671:CDS | 40.0% | |
TGTATTACCGAAGAAACCTG+AGG | - | chr7.3:5099927-5099946 | None:intergenic | 40.0% | |
TGTCACTGTATCTGATGTCA+AGG | + | chr7.3:5101165-5101184 | MS.gene072671:CDS | 40.0% | |
TTCAAACCGTTGAACACGTT+CGG | - | chr7.3:5099521-5099540 | None:intergenic | 40.0% | |
! | AACCGTTTTCTTCAGTTCAG+TGG | + | chr7.3:5101989-5102008 | MS.gene072671:intron | 40.0% |
! | AATGGGTTCATTACCCTCTT+GGG | + | chr7.3:5100956-5100975 | MS.gene072671:intron | 40.0% |
! | ACTGATGGTGTATTCTTCAC+AGG | + | chr7.3:5101623-5101642 | MS.gene072671:intron | 40.0% |
! | CGAAGTGCTTTAGTCTAGAT+AGG | + | chr7.3:5100681-5100700 | MS.gene072671:intron | 40.0% |
! | TATTCGAGAGGTAAAGGTAC+TGG | - | chr7.3:5101023-5101042 | None:intergenic | 40.0% |
!! | ATTCGAGAGGTAAAGGTACT+GGG | - | chr7.3:5101022-5101041 | None:intergenic | 40.0% |
ACATCCTTGTCCTTCACTGA+TGG | + | chr7.3:5101608-5101627 | MS.gene072671:intron | 45.0% | |
ACCATAAGCGCCCTTCTAAA+GGG | - | chr7.3:5100575-5100594 | None:intergenic | 45.0% | |
AGAACAATACAACCTGGAGC+AGG | - | chr7.3:5100739-5100758 | None:intergenic | 45.0% | |
AGCTAAGGCGACGTCTTTAT+AGG | - | chr7.3:5100544-5100563 | None:intergenic | 45.0% | |
AGGACACAACGCCATTCATA+AGG | - | chr7.3:5100607-5100626 | None:intergenic | 45.0% | |
AGGCGCTTAGTTACTAGGAT+AGG | + | chr7.3:5100469-5100488 | MS.gene072671:intron | 45.0% | |
ATGCCTTGAGAAAGCTCTCA+AGG | + | chr7.3:5100402-5100421 | MS.gene072671:intron | 45.0% | |
ATGGCGTTGTGTCCTTTATC+TGG | + | chr7.3:5100612-5100631 | MS.gene072671:intron | 45.0% | |
ATTATGGAGACGGCAAGAAC+TGG | + | chr7.3:5102138-5102157 | MS.gene072671:CDS | 45.0% | |
CTACCAAATGTCAACACACC+TGG | - | chr7.3:5101712-5101731 | None:intergenic | 45.0% | |
GAAAGGAAATCGAACCAGGA+AGG | - | chr7.3:5099682-5099701 | None:intergenic | 45.0% | |
GAGAATCCCTCAGGTTTCTT+CGG | + | chr7.3:5099917-5099936 | MS.gene072671:CDS | 45.0% | |
GCTGAAAACGTAGGAACCAA+TGG | - | chr7.3:5101904-5101923 | None:intergenic | 45.0% | |
GGACACAACGCCATTCATAA+GGG | - | chr7.3:5100606-5100625 | None:intergenic | 45.0% | |
GTATCTGATGTCAAGGGGTT+TGG | + | chr7.3:5101172-5101191 | MS.gene072671:CDS | 45.0% | |
GTCACTTGAGCCCTTATGAA+TGG | + | chr7.3:5100593-5100612 | MS.gene072671:intron | 45.0% | |
TACACCATCAGTGAAGGACA+AGG | - | chr7.3:5101615-5101634 | None:intergenic | 45.0% | |
TCAGAAGAGGCTGAAAACGT+AGG | - | chr7.3:5101913-5101932 | None:intergenic | 45.0% | |
TGCATTGTCTTTGATGCCTG+TGG | + | chr7.3:5100021-5100040 | MS.gene072671:intron | 45.0% | |
TGGCGTTGTGTCCTTTATCT+GGG | + | chr7.3:5100613-5100632 | MS.gene072671:intron | 45.0% | |
TTATGGAGACGGCAAGAACT+GGG | + | chr7.3:5102139-5102158 | MS.gene072671:CDS | 45.0% | |
TTCACGTGTTTCCCTTGCTT+CGG | + | chr7.3:5100713-5100732 | MS.gene072671:intron | 45.0% | |
TTGAGAGCTTTCTCAAGGCA+TGG | - | chr7.3:5100403-5100422 | None:intergenic | 45.0% | |
! | AGACCAGGTGTGTTGACATT+TGG | + | chr7.3:5101706-5101725 | MS.gene072671:intron | 45.0% |
! | GAATGGGTTCATTACCCTCT+TGG | + | chr7.3:5100955-5100974 | MS.gene072671:intron | 45.0% |
! | GTAAGGCCAACATCTTTTGC+TGG | + | chr7.3:5102187-5102206 | MS.gene072671:intron | 45.0% |
! | GTCCTTTATCTGGGTTTTCC+CGG | + | chr7.3:5100622-5100641 | MS.gene072671:intron | 45.0% |
! | TTTTTCATCCAGGAAGCCCT+TGG | + | chr7.3:5101074-5101093 | MS.gene072671:intron | 45.0% |
!! | TTCGAGAGGTAAAGGTACTG+GGG | - | chr7.3:5101021-5101040 | None:intergenic | 45.0% |
!! | AAAAAAAAAAATTATGAAAA+AGG | - | chr7.3:5099954-5099973 | None:intergenic | 5.0% |
AAAACACGGCTGAAGTTGGG+TGG | - | chr7.3:5101468-5101487 | None:intergenic | 50.0% | |
ACGAATTCTCAGGTGAGCGT+GGG | + | chr7.3:5102523-5102542 | MS.gene072671:intron | 50.0% | |
AGAACTGGGGAGATTGGTGA+TGG | + | chr7.3:5102153-5102172 | MS.gene072671:CDS | 50.0% | |
AGCGCACAAATTTAGGCCTG+TGG | + | chr7.3:5101442-5101461 | MS.gene072671:intron | 50.0% | |
AGCGTCATTCGCAAGCGTTT+CGG | + | chr7.3:5099581-5099600 | MS.gene072671:CDS | 50.0% | |
CAATTTGGACCGGGAAAACC+CGG | - | chr7.3:5100787-5100806 | None:intergenic | 50.0% | |
CACCGGGAAAACCCAGATAA+AGG | - | chr7.3:5100627-5100646 | None:intergenic | 50.0% | |
GAAACCTGAGGGATTCTCCA+TGG | - | chr7.3:5099915-5099934 | None:intergenic | 50.0% | |
GACCATAAGCGCCCTTCTAA+AGG | - | chr7.3:5100576-5100595 | None:intergenic | 50.0% | |
GCGAAACCGAACGTGTTCAA+CGG | + | chr7.3:5099512-5099531 | MS.gene072671:CDS | 50.0% | |
GGAGCAAATGGTTACCTGTG+CGG | - | chr7.3:5102434-5102453 | None:intergenic | 50.0% | |
GGGTTTATCCAACCCCCTTA+TGG | - | chr7.3:5100441-5100460 | None:intergenic | 50.0% | |
GTTTGAACGTGAACAGGCCA+TGG | + | chr7.3:5099895-5099914 | MS.gene072671:intron | 50.0% | |
TAAAGGGCCGAAGCAAGCTA+AGG | - | chr7.3:5100559-5100578 | None:intergenic | 50.0% | |
TACGAATTCTCAGGTGAGCG+TGG | + | chr7.3:5102522-5102541 | MS.gene072671:intron | 50.0% | |
TATGGAGACGGCAAGAACTG+GGG | + | chr7.3:5102140-5102159 | MS.gene072671:CDS | 50.0% | |
TCATGGATCTCGTCCCAAGA+GGG | - | chr7.3:5100972-5100991 | None:intergenic | 50.0% | |
! | CTTGCTTCGGCCCTTTAGAA+GGG | + | chr7.3:5100562-5100581 | MS.gene072671:intron | 50.0% |
AAGCACTTCGCCTTGTCCCA+AGG | - | chr7.3:5100671-5100690 | None:intergenic | 55.0% | |
ACGGCAAGAACTGGGGAGAT+TGG | + | chr7.3:5102147-5102166 | MS.gene072671:CDS | 55.0% | |
CGAATTCTCAGGTGAGCGTG+GGG | + | chr7.3:5102524-5102543 | MS.gene072671:intron | 55.0% | |
CTCAGGGTGGCTCAAAAGAG+AGG | + | chr7.3:5101197-5101216 | MS.gene072671:CDS | 55.0% | |
GAGAGGCAGGGAGGTAAGTA+TGG | + | chr7.3:5101214-5101233 | MS.gene072671:intron | 55.0% | |
GCTTGCTTCGGCCCTTTAGA+AGG | + | chr7.3:5100561-5100580 | MS.gene072671:intron | 55.0% | |
GGTGGCTCAAAAGAGAGGCA+GGG | + | chr7.3:5101202-5101221 | MS.gene072671:CDS | 55.0% | |
GTCATGGATCTCGTCCCAAG+AGG | - | chr7.3:5100973-5100992 | None:intergenic | 55.0% | |
TTGTCCCAAGGCTCGTGCTT+GGG | - | chr7.3:5100659-5100678 | None:intergenic | 55.0% | |
!! | GACGTCGCCTTAGCTTGCTT+CGG | + | chr7.3:5100549-5100568 | MS.gene072671:intron | 55.0% |
!! | GCCCTTTAGAAGGGCGCTTA+TGG | + | chr7.3:5100571-5100590 | MS.gene072671:intron | 55.0% |
!! | GTCAAGGGGTTTGGTGCTCA+GGG | + | chr7.3:5101181-5101200 | MS.gene072671:CDS | 55.0% |
!! | TGTCAAGGGGTTTGGTGCTC+AGG | + | chr7.3:5101180-5101199 | MS.gene072671:CDS | 55.0% |
ACCGGGAAAACCCGGATACG+GGG | - | chr7.3:5100779-5100798 | None:intergenic | 60.0% | |
AGCAGGCTGAGAGGATGGCT+GGG | + | chr7.3:5102547-5102566 | MS.gene072671:CDS | 60.0% | |
CAAGCACGAGCCTTGGGACA+AGG | + | chr7.3:5100658-5100677 | MS.gene072671:intron | 60.0% | |
CAGGCCATGGAGAATCCCTC+AGG | + | chr7.3:5099908-5099927 | MS.gene072671:intron | 60.0% | |
CTTGTCCCAAGGCTCGTGCT+TGG | - | chr7.3:5100660-5100679 | None:intergenic | 60.0% | |
GACCGGGAAAACCCGGATAC+GGG | - | chr7.3:5100780-5100799 | None:intergenic | 60.0% | |
GGACCGGGAAAACCCGGATA+CGG | - | chr7.3:5100781-5100800 | None:intergenic | 60.0% | |
GGCTCAAAAGAGAGGCAGGG+AGG | + | chr7.3:5101205-5101224 | MS.gene072671:CDS | 60.0% | |
GGGTGGCTCAAAAGAGAGGC+AGG | + | chr7.3:5101201-5101220 | MS.gene072671:CDS | 60.0% | |
TGTCCCAAGGCTCGTGCTTG+GGG | - | chr7.3:5100658-5100677 | None:intergenic | 60.0% | |
!! | AAGGGGTTTGGTGCTCAGGG+TGG | + | chr7.3:5101184-5101203 | MS.gene072671:CDS | 60.0% |
ACCTGGAGCAGGCCGAAGCA+AGG | - | chr7.3:5100728-5100747 | None:intergenic | 65.0% | |
CAGGCTGAGAGGATGGCTGG+GGG | + | chr7.3:5102549-5102568 | MS.gene072671:CDS | 65.0% | |
CCTGGAGCAGGCCGAAGCAA+GGG | - | chr7.3:5100727-5100746 | None:intergenic | 65.0% | |
GAGCAGGCTGAGAGGATGGC+TGG | + | chr7.3:5102546-5102565 | MS.gene072671:CDS | 65.0% | |
GCAGAAGGCCAAGGGCTTCC+TGG | - | chr7.3:5101085-5101104 | None:intergenic | 65.0% | |
GCAGGCTGAGAGGATGGCTG+GGG | + | chr7.3:5102548-5102567 | MS.gene072671:CDS | 65.0% | |
GGCTGAAGTTGGGTGGCCAC+AGG | - | chr7.3:5101461-5101480 | None:intergenic | 65.0% | |
GTCCCAAGGCTCGTGCTTGG+GGG | - | chr7.3:5100657-5100676 | None:intergenic | 65.0% | |
TCCCAAGGCTCGTGCTTGGG+GGG | - | chr7.3:5100656-5100675 | None:intergenic | 65.0% | |
TGCTTGGGGGGCTTGTGCAC+CGG | - | chr7.3:5100644-5100663 | None:intergenic | 65.0% | |
TGGGGAGCAGGCTGAGAGGA+TGG | + | chr7.3:5102542-5102561 | MS.gene072671:CDS | 65.0% | |
! | GCCCCGTATCCGGGTTTTCC+CGG | + | chr7.3:5100775-5100794 | MS.gene072671:intron | 65.0% |
!! | AGGGCACTGAGCCCCGTATC+CGG | + | chr7.3:5100765-5100784 | MS.gene072671:intron | 65.0% |
AGCCCCCCAAGCACGAGCCT+TGG | + | chr7.3:5100651-5100670 | MS.gene072671:intron | 70.0% | |
AGCGTGGGGAGCAGGCTGAG+AGG | + | chr7.3:5102538-5102557 | MS.gene072671:CDS | 70.0% | |
CCCTTGCTTCGGCCTGCTCC+AGG | + | chr7.3:5100724-5100743 | MS.gene072671:intron | 70.0% | |
CTCAGGTGAGCGTGGGGAGC+AGG | + | chr7.3:5102530-5102549 | MS.gene072671:intron | 70.0% | |
GCCCCCCAAGCACGAGCCTT+GGG | + | chr7.3:5100652-5100671 | MS.gene072671:intron | 70.0% | |
GCTTGGGGGGCTTGTGCACC+GGG | - | chr7.3:5100643-5100662 | None:intergenic | 70.0% | |
!! | GGGCACTGAGCCCCGTATCC+GGG | + | chr7.3:5100766-5100785 | MS.gene072671:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 5099500 | 5102596 | 5099500 | ID=MS.gene072671 |
chr7.3 | mRNA | 5099500 | 5102596 | 5099500 | ID=MS.gene072671.t1;Parent=MS.gene072671 |
chr7.3 | exon | 5099500 | 5099686 | 5099500 | ID=MS.gene072671.t1.exon1;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5099500 | 5099686 | 5099500 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5099767 | 5099812 | 5099767 | ID=MS.gene072671.t1.exon2;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5099767 | 5099812 | 5099767 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5099911 | 5099938 | 5099911 | ID=MS.gene072671.t1.exon3;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5099911 | 5099938 | 5099911 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5101139 | 5101226 | 5101139 | ID=MS.gene072671.t1.exon4;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5101139 | 5101226 | 5101139 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5101645 | 5101712 | 5101645 | ID=MS.gene072671.t1.exon5;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5101645 | 5101712 | 5101645 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5102117 | 5102186 | 5102117 | ID=MS.gene072671.t1.exon6;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5102117 | 5102186 | 5102117 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5102403 | 5102438 | 5102403 | ID=MS.gene072671.t1.exon7;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5102403 | 5102438 | 5102403 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
chr7.3 | exon | 5102535 | 5102596 | 5102535 | ID=MS.gene072671.t1.exon8;Parent=MS.gene072671.t1 |
chr7.3 | CDS | 5102535 | 5102596 | 5102535 | ID=cds.MS.gene072671.t1;Parent=MS.gene072671.t1 |
Gene Sequence |
Protein sequence |