AlfalfaGEDB | MS.gene59769

M. sativa cultivar XinJiangDaYe / MS.gene59769

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59769.t1	XP_003628087.1	98.3	60	1	0	1	60	1	60	5.70E-24	119.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59769.t1	G7LJ77	98.3	60	1	0	1	60	1	60	4.1e-24	119.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene59769	0.810875	9.27E-51	-1.69E-46
MS.gene049255	MS.gene59769	0.815946	7.13E-52	-1.69E-46
MS.gene049341	MS.gene59769	0.822116	2.81E-53	-1.69E-46
MS.gene049501	MS.gene59769	0.809609	1.74E-50	-1.69E-46
MS.gene049756	MS.gene59769	0.807911	4.01E-50	-1.69E-46
MS.gene050277	MS.gene59769	0.834013	3.83E-56	-1.69E-46
MS.gene050303	MS.gene59769	0.841394	4.88E-58	-1.69E-46
MS.gene050438	MS.gene59769	0.841187	5.53E-58	-1.69E-46
MS.gene050586	MS.gene59769	0.805353	1.39E-49	-1.69E-46
MS.gene050719	MS.gene59769	0.84672	1.82E-59	-1.69E-46
MS.gene050721	MS.gene59769	0.846655	1.90E-59	-1.69E-46
MS.gene050724	MS.gene59769	0.841056	5.99E-58	-1.69E-46
MS.gene050815	MS.gene59769	0.880363	5.84E-70	-1.69E-46
MS.gene050844	MS.gene59769	0.802933	4.43E-49	-1.69E-46
MS.gene051088	MS.gene59769	0.826248	3.01E-54	-1.69E-46
MS.gene051243	MS.gene59769	0.823852	1.11E-53	-1.69E-46
MS.gene051245	MS.gene59769	0.802826	4.67E-49	-1.69E-46
MS.gene051328	MS.gene59769	0.837733	4.37E-57	-1.69E-46
MS.gene051349	MS.gene59769	0.816979	4.18E-52	-1.69E-46
MS.gene05134	MS.gene59769	0.806078	9.80E-50	-1.69E-46
MS.gene051577	MS.gene59769	0.813123	3.00E-51	-1.69E-46
MS.gene051633	MS.gene59769	0.814228	1.71E-51	-1.69E-46
MS.gene051757	MS.gene59769	0.833082	6.54E-56	-1.69E-46
MS.gene052012	MS.gene59769	0.833725	4.52E-56	-1.69E-46
MS.gene052286	MS.gene59769	0.806683	7.30E-50	-1.69E-46
MS.gene052302	MS.gene59769	0.812551	4.01E-51	-1.69E-46
MS.gene052376	MS.gene59769	0.826138	3.20E-54	-1.69E-46
MS.gene052896	MS.gene59769	0.817553	3.11E-52	-1.69E-46
MS.gene053008	MS.gene59769	0.836919	7.06E-57	-1.69E-46
MS.gene053074	MS.gene59769	0.824578	7.48E-54	-1.69E-46
MS.gene054184	MS.gene59769	0.801128	1.04E-48	-1.69E-46
MS.gene054185	MS.gene59769	0.809234	2.09E-50	-1.69E-46
MS.gene054472	MS.gene59769	0.811058	8.46E-51	-1.69E-46
MS.gene055512	MS.gene59769	0.813577	2.39E-51	-1.69E-46
MS.gene055623	MS.gene59769	0.812756	3.61E-51	-1.69E-46
MS.gene056432	MS.gene59769	0.805146	1.54E-49	-1.69E-46
MS.gene056631	MS.gene59769	0.840207	9.99E-58	-1.69E-46
MS.gene056760	MS.gene59769	0.832289	1.03E-55	-1.69E-46
MS.gene057140	MS.gene59769	0.84875	5.02E-60	-1.69E-46
MS.gene05795	MS.gene59769	0.80033	1.52E-48	-1.69E-46
MS.gene058084	MS.gene59769	0.831091	2.03E-55	-1.69E-46
MS.gene058168	MS.gene59769	0.823343	1.46E-53	-1.69E-46
MS.gene058182	MS.gene59769	0.822517	2.27E-53	-1.69E-46
MS.gene058238	MS.gene59769	0.813903	2.02E-51	-1.69E-46
MS.gene058906	MS.gene59769	0.882526	9.68E-71	-1.69E-46
MS.gene058982	MS.gene59769	0.803268	3.78E-49	-1.69E-46
MS.gene059151	MS.gene59769	0.811265	7.63E-51	-1.69E-46
MS.gene059249	MS.gene59769	0.841033	6.07E-58	-1.69E-46
MS.gene05954	MS.gene59769	0.805626	1.22E-49	-1.69E-46
MS.gene059937	MS.gene59769	0.803153	3.99E-49	-1.69E-46
MS.gene06001	MS.gene59769	0.82706	1.93E-54	-1.69E-46
MS.gene060322	MS.gene59769	0.816051	6.75E-52	-1.69E-46
MS.gene060429	MS.gene59769	0.828687	7.83E-55	-1.69E-46
MS.gene060470	MS.gene59769	0.813556	2.41E-51	-1.69E-46
MS.gene060572	MS.gene59769	0.811905	5.54E-51	-1.69E-46
MS.gene060586	MS.gene59769	0.804762	1.85E-49	-1.69E-46
MS.gene060803	MS.gene59769	0.827656	1.39E-54	-1.69E-46
MS.gene060907	MS.gene59769	0.802341	5.87E-49	-1.69E-46
MS.gene060998	MS.gene59769	0.80107	1.07E-48	-1.69E-46
MS.gene06114	MS.gene59769	0.803494	3.39E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59769.t1	MTR_8g043400	98.333	60	1	0	1	60	1	60	3.07e-38	120

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59769.t1	AT3G15395	65.000	60	20	1	1	60	1	59	3.54e-24	85.5
MS.gene59769.t1	AT3G15395	65.000	60	20	1	1	60	1	59	3.54e-24	85.5
MS.gene59769.t1	AT3G15395	65.000	60	20	1	1	60	1	59	3.54e-24	85.5
MS.gene59769.t1	AT3G15395	65.000	60	20	1	1	60	1	59	3.54e-24	85.5
MS.gene59769.t1	AT3G15395	65.000	60	20	1	1	60	1	59	3.54e-24	85.5

Find 20 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTCTTTGGGCTTGTGCTAT+TGG	0.281471	8.3:-55286827	MS.gene59769:CDS
AGTGGTCTATGAGAGTTCTT+TGG	0.313525	8.3:-55286841	MS.gene59769:CDS
AGGCTTGAAAGGAATGGATT+TGG	0.349048	8.3:-55286403	MS.gene59769:CDS
ATCCATTCCTTTCAAGCCTT+CGG	0.357129	8.3:+55286407	None:intergenic
TAGAAAGACAAAAGCAGAAT+AGG	0.394330	8.3:-55286443	MS.gene59769:CDS
GTGGTCTATGAGAGTTCTTT+GGG	0.402171	8.3:-55286840	MS.gene59769:CDS
TACCTGTCTAGGTCTGTATA+TGG	0.414586	8.3:-55286472	MS.gene59769:intron
CTTGTCCGTAATTACTCCTC+TGG	0.492027	8.3:+55286862	None:intergenic
GGGAACCAGAGGAGTAATTA+CGG	0.516023	8.3:-55286867	MS.gene59769:CDS
CTTGAAAGGAATGGATTTGG+AGG	0.518401	8.3:-55286400	MS.gene59769:CDS
AAAGGAATGGATTTGGAGGA+AGG	0.535893	8.3:-55286396	MS.gene59769:CDS
GGCCGAAGGCTTGAAAGGAA+TGG	0.548731	8.3:-55286409	MS.gene59769:CDS
ATGTTGGCCGAAGGCTTGAA+AGG	0.560678	8.3:-55286414	MS.gene59769:CDS
GCAGAATAGGCAGAGGATGT+TGG	0.565240	8.3:-55286430	MS.gene59769:CDS
ATGGATTTGGAGGAAGGCAA+TGG	0.569370	8.3:-55286390	MS.gene59769:CDS
AATTACTCCTCTGGTTCCCA+TGG	0.583145	8.3:+55286871	None:intergenic
GACAAAAGCAGAATAGGCAG+AGG	0.586343	8.3:-55286437	MS.gene59769:CDS
CTGCATGCCATGGGAACCAG+AGG	0.620238	8.3:-55286878	None:intergenic
GAGGAGTAATTACGGACAAG+TGG	0.636089	8.3:-55286859	MS.gene59769:CDS
AGGCAGAGGATGTTGGCCGA+AGG	0.646645	8.3:-55286423	MS.gene59769:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	55286377	55286891	55286377	ID=MS.gene59769
chr8.3	mRNA	55286377	55286891	55286377	ID=MS.gene59769.t1;Parent=MS.gene59769
chr8.3	exon	55286816	55286891	55286816	ID=MS.gene59769.t1.exon1;Parent=MS.gene59769.t1
chr8.3	CDS	55286816	55286891	55286816	ID=cds.MS.gene59769.t1;Parent=MS.gene59769.t1
chr8.3	exon	55286377	55286483	55286377	ID=MS.gene59769.t1.exon2;Parent=MS.gene59769.t1
chr8.3	CDS	55286377	55286483	55286377	ID=cds.MS.gene59769.t1;Parent=MS.gene59769.t1

Gene Sequence

>MS.gene59769

ATGGGAACCAGAGGAGTAATTACGGACAAGTGGTCTATGAGAGTTCTTTGGGCTTGTGCTATTGGAAGTGCTGTTAGTAAGCATTCTAGACCCTTTATTAATGGAACCTTCTTTCCTGAAGCCTTGTTAACAAACTTAAATGTAACTTTGTTATGTTATGTCTCTTCACTTTTTGTATAAAACATTGTTCATATGATCATATTTTTCTCATTATGAATCACTACTATACCGATGTTGTTAGATAGCTGTTATAGCGTAGTGGAACTCAAACAAATTGCTGTTGTTTTACGATACGTTATTTAGGGTAAACTATTTTCAAATAGCGGCTATAACAATACTATAGCACTTTTTCGTAGTGGAATTTCAACAACTGATATTTTCTGACGACACTGTACTATACCTGTCTAGGTCTGTATATGGTTGCTGTAGAAAGACAAAAGCAGAATAGGCAGAGGATGTTGGCCGAAGGCTTGAAAGGAATGGATTTGGAGGAAGGCAATGGTGAAAATGTTTGA

Protein sequence

>MS.gene59769.t1

MGTRGVITDKWSMRVLWACAIGSAVSLYMVAVERQKQNRQRMLAEGLKGMDLEEGNGENV