Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030258.t1 | XP_024641079.1 | 97.9 | 910 | 18 | 1 | 1 | 910 | 1 | 909 | 0.00E+00 | 1789.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030258.t1 | O14053 | 35.0 | 904 | 527 | 16 | 3 | 891 | 23 | 880 | 5.9e-153 | 543.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030258.t1 | A0A396HIM7 | 97.9 | 910 | 18 | 1 | 1 | 910 | 1 | 909 | 0.0e+00 | 1789.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030258.t1 | MTR_6g093060 | 97.882 | 897 | 18 | 1 | 1 | 897 | 1 | 896 | 0.0 | 1820 |
MS.gene030258.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.92e-12 | 72.0 |
MS.gene030258.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 2.37e-12 | 71.6 |
MS.gene030258.t1 | MTR_6g004040 | 25.735 | 272 | 171 | 10 | 81 | 342 | 4 | 254 | 2.55e-12 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030258.t1 | AT4G04940 | 72.747 | 910 | 244 | 3 | 1 | 907 | 1 | 909 | 0.0 | 1394 |
MS.gene030258.t1 | AT4G04940 | 71.859 | 796 | 220 | 3 | 115 | 907 | 1 | 795 | 0.0 | 1206 |
MS.gene030258.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 2.19e-15 | 81.6 |
MS.gene030258.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 6.39e-14 | 76.6 |
MS.gene030258.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 2.60e-15 | 81.3 |
MS.gene030258.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 6.79e-14 | 76.6 |
MS.gene030258.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 3.01e-15 | 81.3 |
MS.gene030258.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 6.79e-14 | 76.6 |
MS.gene030258.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 13 | 169 | 8.66e-15 | 79.7 |
MS.gene030258.t1 | AT1G11160 | 28.947 | 190 | 125 | 6 | 154 | 342 | 31 | 211 | 6.17e-14 | 76.6 |
MS.gene030258.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 9.63e-15 | 79.3 |
MS.gene030258.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.37e-14 | 79.0 |
MS.gene030258.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 9.79e-15 | 79.3 |
MS.gene030258.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.38e-14 | 79.0 |
MS.gene030258.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 1.01e-14 | 79.3 |
MS.gene030258.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.43e-14 | 79.0 |
MS.gene030258.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.21e-14 | 79.0 |
MS.gene030258.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.19e-11 | 67.4 |
MS.gene030258.t1 | AT5G08390 | 27.068 | 266 | 175 | 8 | 81 | 342 | 4 | 254 | 1.30e-14 | 79.0 |
MS.gene030258.t1 | AT5G08390 | 24.204 | 157 | 116 | 3 | 472 | 626 | 57 | 212 | 2.00e-11 | 68.6 |
MS.gene030258.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.44e-14 | 78.6 |
MS.gene030258.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.41e-11 | 67.4 |
MS.gene030258.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.44e-14 | 78.6 |
MS.gene030258.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.41e-11 | 67.4 |
MS.gene030258.t1 | AT2G26490 | 23.588 | 301 | 188 | 12 | 59 | 325 | 99 | 391 | 9.74e-11 | 65.9 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCAGTTCCATTGCTTTC+TGG | -0.057605 | 6.2:+89334526 | MS.gene030258:CDS |
TAGAAACTCAAAATTATTTC+TGG | 0.114239 | 6.2:-89335186 | None:intergenic |
TGGATGGAAGTCTTAGAATT+TGG | 0.184320 | 6.2:+89333528 | MS.gene030258:CDS |
GGACTCTTCAAGCATGAATT+TGG | 0.196098 | 6.2:-89335480 | None:intergenic |
GATTTCACTTTCGCTGCTTT+TGG | 0.205987 | 6.2:+89327007 | MS.gene030258:CDS |
GGACAGCCCCTTCTGGCTTC+TGG | 0.209939 | 6.2:+89329060 | MS.gene030258:CDS |
ACTACCCATGTTGATCAAAA+TGG | 0.216761 | 6.2:+89333641 | MS.gene030258:CDS |
CTTCAGTTCCATTGCTTTCT+GGG | 0.219128 | 6.2:+89334527 | MS.gene030258:CDS |
TCCTCTAATGATACCTTTCC+AGG | 0.223878 | 6.2:-89334565 | None:intergenic |
AGAACAACCAACATCCAATT+TGG | 0.240866 | 6.2:-89333160 | None:intergenic |
GCATGTAAACAGGTTCTTAT+TGG | 0.255726 | 6.2:+89328366 | MS.gene030258:intron |
GCAAGAGAAGTAATCTTCTT+AGG | 0.274440 | 6.2:-89326974 | None:intergenic |
TATTCTCAGTCTTGATGTTC+AGG | 0.286517 | 6.2:+89327863 | MS.gene030258:CDS |
TTGCTAATATATCCATGTTT+GGG | 0.291782 | 6.2:-89333619 | None:intergenic |
GAGGAAGTCCTAACCTTTAC+AGG | 0.295653 | 6.2:-89332527 | None:intergenic |
AAGCTTTGCCACTGGCTCTT+TGG | 0.298514 | 6.2:-89334282 | None:intergenic |
CTGGCTTCTGGAGGTTCATC+TGG | 0.306643 | 6.2:+89329072 | MS.gene030258:CDS |
TCCAGATACTTACCTTAATA+AGG | 0.315613 | 6.2:+89327986 | MS.gene030258:CDS |
ATCTCCATCAACTCTGGATA+TGG | 0.316374 | 6.2:+89335049 | MS.gene030258:CDS |
ACCACCAGCTGTCCCTAAAA+TGG | 0.318292 | 6.2:-89332824 | None:intergenic |
CATCTTCTTGTGGGCATTCA+AGG | 0.319568 | 6.2:+89327890 | MS.gene030258:CDS |
GGGAAAGCCGGAGCATCTTT+AGG | 0.327151 | 6.2:-89334213 | None:intergenic |
ATGGCTTCTTTCGTCCAGTA+TGG | 0.331971 | 6.2:+89333508 | MS.gene030258:CDS |
GTTGCTAATATATCCATGTT+TGG | 0.333368 | 6.2:-89333620 | None:intergenic |
GGATGGAAGTCTTAGAATTT+GGG | 0.333460 | 6.2:+89333529 | MS.gene030258:CDS |
CATGTAAACAGGTTCTTATT+GGG | 0.334236 | 6.2:+89328367 | MS.gene030258:intron |
TTTAGATGGACAGCCCCTTC+TGG | 0.340805 | 6.2:+89329053 | MS.gene030258:intron |
GCGGAGTCTTAAATCCAAAT+TGG | 0.344934 | 6.2:+89333146 | MS.gene030258:CDS |
GATACTCAAGTTGAGCATTC+TGG | 0.353256 | 6.2:+89334168 | MS.gene030258:CDS |
ATTGAAGAATATAGAGAAAA+CGG | 0.358795 | 6.2:-89334648 | None:intergenic |
AAGATGTGCTCACCTTATTA+AGG | 0.360143 | 6.2:-89327998 | None:intergenic |
ATTGTTTACCATCGTTATAA+TGG | 0.363546 | 6.2:+89333192 | MS.gene030258:CDS |
ACCTTATTAAGGTAAGTATC+TGG | 0.369983 | 6.2:-89327987 | None:intergenic |
AATGAAAGTGTAACTAAATC+AGG | 0.370674 | 6.2:-89334255 | None:intergenic |
AGACTTGTTCGTAAATTTGA+AGG | 0.377882 | 6.2:+89333440 | MS.gene030258:CDS |
CATCCGTTACGATGAAGAAT+TGG | 0.379794 | 6.2:+89328545 | MS.gene030258:CDS |
CCCTGTGAATTCCAGATTGA+AGG | 0.385512 | 6.2:-89332864 | None:intergenic |
CTACCCATGTTGATCAAAAT+GGG | 0.390528 | 6.2:+89333642 | MS.gene030258:CDS |
GTCCTAACCTTTACAGGCGT+TGG | 0.395238 | 6.2:-89332521 | None:intergenic |
CTTGCATATGAATCGACATT+TGG | 0.398727 | 6.2:-89334096 | None:intergenic |
TGTTATTAGCATATGGAATC+TGG | 0.399911 | 6.2:+89329095 | MS.gene030258:CDS |
GACTCTTCAAGCATGAATTT+GGG | 0.401326 | 6.2:-89335479 | None:intergenic |
GATCAATTTAGACATTATAA+AGG | 0.409214 | 6.2:+89334305 | MS.gene030258:CDS |
ACACATTCTTTCTGCTGGCC+AGG | 0.414729 | 6.2:+89330455 | MS.gene030258:CDS |
AGCAAGGCACTATGCAGCTT+TGG | 0.417073 | 6.2:+89328394 | MS.gene030258:CDS |
CATCTGGTGTTATTAGCATA+TGG | 0.418142 | 6.2:+89329088 | MS.gene030258:CDS |
GTGAAATCGTTATTGTTGTT+TGG | 0.420707 | 6.2:+89327834 | MS.gene030258:CDS |
GAAAAGTTCAACCTTCAATC+TGG | 0.422796 | 6.2:+89332853 | MS.gene030258:CDS |
TTGAAGAATATAGAGAAAAC+GGG | 0.427715 | 6.2:-89334647 | None:intergenic |
GGTATTTGCTTATCTTGAGT+TGG | 0.432192 | 6.2:-89334234 | None:intergenic |
GTATTTGCTTATCTTGAGTT+GGG | 0.433079 | 6.2:-89334233 | None:intergenic |
GCTCTAGATGTTGTTGCTGT+TGG | 0.443800 | 6.2:+89328492 | MS.gene030258:CDS |
CTGAAATTAGAGAGCGTGAT+TGG | 0.445206 | 6.2:+89332396 | MS.gene030258:CDS |
TCTAAGACTTCCATCCATAC+TGG | 0.450343 | 6.2:-89333522 | None:intergenic |
GCCTGGAAAGGTATCATTAG+AGG | 0.455965 | 6.2:+89334564 | MS.gene030258:CDS |
GAAGTCTCCACACATATGCT+TGG | 0.457584 | 6.2:-89332451 | None:intergenic |
GGGATATCAAGGAGATATAA+AGG | 0.459764 | 6.2:+89332984 | MS.gene030258:CDS |
TTGAGTCGTTGAACGGAGAA+AGG | 0.463350 | 6.2:-89326860 | None:intergenic |
GGGGAAATATTGTTTGAGCC+TGG | 0.465198 | 6.2:+89334547 | MS.gene030258:CDS |
GTTAATAGGATCAACAAAGT+AGG | 0.466327 | 6.2:+89330835 | MS.gene030258:intron |
TCTTCATCTTGCCAGATACA+TGG | 0.467591 | 6.2:+89335325 | MS.gene030258:intron |
GACTGCTAGAGAACATTGCC+TGG | 0.469186 | 6.2:-89334074 | None:intergenic |
ATAATGAATTTCAGGTCTCC+TGG | 0.469274 | 6.2:+89333367 | MS.gene030258:intron |
AGATACATGGCGAGACAATT+CGG | 0.470210 | 6.2:+89335338 | MS.gene030258:intron |
CTCTCAACCTAAAGATGCTC+CGG | 0.471862 | 6.2:+89334206 | MS.gene030258:CDS |
AATTAGATTGTTTGATGTTG+TGG | 0.472460 | 6.2:+89333412 | MS.gene030258:CDS |
TCTAACACAATGTGGCCAAC+AGG | 0.474624 | 6.2:-89327933 | None:intergenic |
GACAGTGATAATGCCGTGAT+AGG | 0.477724 | 6.2:-89333596 | None:intergenic |
AATATTCGAGTTTAAGGGAT+GGG | 0.480520 | 6.2:+89328437 | MS.gene030258:CDS |
AAGTCTCCACACATATGCTT+GGG | 0.483404 | 6.2:-89332450 | None:intergenic |
TATGGAATCTGGAAAAGAAA+AGG | 0.484303 | 6.2:+89329106 | MS.gene030258:CDS |
CTTAAATCCAAATTGGATGT+TGG | 0.485333 | 6.2:+89333153 | MS.gene030258:CDS |
ATGATAAGTGTGGGATATCA+AGG | 0.485504 | 6.2:+89332973 | MS.gene030258:CDS |
TCAGGGAAACATCTTCTTGT+GGG | 0.486721 | 6.2:+89327881 | MS.gene030258:CDS |
TCTCCTGTGGAAGAGATAGA+TGG | 0.486932 | 6.2:-89334147 | None:intergenic |
TTCAGTTCCATTGCTTTCTG+GGG | 0.487757 | 6.2:+89334528 | MS.gene030258:CDS |
ACCTTCAATCTGGAATTCAC+AGG | 0.487997 | 6.2:+89332863 | MS.gene030258:CDS |
GGAAGACACATTCTTTCTGC+TGG | 0.491112 | 6.2:+89330450 | MS.gene030258:CDS |
TGAAAATCCAACGCCTGTAA+AGG | 0.491515 | 6.2:+89332514 | MS.gene030258:CDS |
GGAACTGAAGGCAGGAAGAA+TGG | 0.492639 | 6.2:-89334514 | None:intergenic |
CATCAAGGATCTGAAGCATT+CGG | 0.495114 | 6.2:-89335076 | None:intergenic |
ATGCATCCGATGGCTCTGTA+TGG | 0.495730 | 6.2:-89326824 | None:intergenic |
GTAATCTTCTTAGGAAGTTG+AGG | 0.497363 | 6.2:-89326965 | None:intergenic |
TTATCTTGAGTTGGGAAAGC+CGG | 0.498897 | 6.2:-89334225 | None:intergenic |
AATCATCTGCTACGGTAGCC+AGG | 0.502240 | 6.2:-89333385 | None:intergenic |
TAATGTGGTTACCTGCCATA+TGG | 0.502599 | 6.2:+89332421 | MS.gene030258:CDS |
GATTTGTGCTTCAGTGAGGA+TGG | 0.509567 | 6.2:+89333482 | MS.gene030258:CDS |
GATGAGACAATACAGGAGAT+AGG | 0.509616 | 6.2:-89328465 | None:intergenic |
AAAGGCGAAAGGCTCGATCC+TGG | 0.510767 | 6.2:-89330473 | None:intergenic |
CAGCCCCTTCTGGCTTCTGG+AGG | 0.511831 | 6.2:+89329063 | MS.gene030258:CDS |
AATTCCATATCCAGAGTTGA+TGG | 0.514868 | 6.2:-89335053 | None:intergenic |
AGGATTATCTCCATCAACTC+TGG | 0.515928 | 6.2:+89335043 | MS.gene030258:CDS |
ATTCTCAGTCTTGATGTTCA+GGG | 0.516449 | 6.2:+89327864 | MS.gene030258:CDS |
GCATTCACTGATTATATCAA+AGG | 0.518837 | 6.2:+89335023 | MS.gene030258:CDS |
TAATCCACGAGTTGTTCAAT+CGG | 0.520785 | 6.2:-89335143 | None:intergenic |
AGCAGGGGATGAGACAATAC+AGG | 0.520849 | 6.2:-89328472 | None:intergenic |
AAGAACAATCTTGTTCCTGT+TGG | 0.524603 | 6.2:+89327918 | MS.gene030258:CDS |
ACTGCTTTATCTTTCAGCAC+TGG | 0.525692 | 6.2:+89328600 | MS.gene030258:CDS |
GCTTCAGTGAGGATGGGAAA+TGG | 0.527395 | 6.2:+89333489 | MS.gene030258:CDS |
TTAATAGGATCAACAAAGTA+GGG | 0.528258 | 6.2:+89330836 | MS.gene030258:intron |
CTTCTTTCGTCCAGTATGGA+TGG | 0.530251 | 6.2:+89333512 | MS.gene030258:CDS |
AGTATCTGGATGCATAATAC+AGG | 0.530387 | 6.2:-89327973 | None:intergenic |
AAAATTGCCACAAGCACTGA+TGG | 0.530939 | 6.2:-89332800 | None:intergenic |
ATATAGAGAAAACGGGATGA+TGG | 0.533892 | 6.2:-89334640 | None:intergenic |
GCTCATCATTGTCGTCATCA+AGG | 0.534047 | 6.2:-89335091 | None:intergenic |
GTTCTTATTGGGAGTGAGCA+AGG | 0.535121 | 6.2:+89328378 | MS.gene030258:CDS |
ATGCTTGGGCAGTATCCATA+TGG | 0.536649 | 6.2:-89332436 | None:intergenic |
TTCATATGCAAGTGGAAAAG+AGG | 0.537479 | 6.2:+89334107 | MS.gene030258:CDS |
TTCAGTGTTGAGTCGTTGAA+CGG | 0.537582 | 6.2:-89326867 | None:intergenic |
TAATTCTTACTTTATGCAGA+GGG | 0.539368 | 6.2:-89329868 | None:intergenic |
CAACCTGTACAACAGAGAAA+AGG | 0.541536 | 6.2:-89330491 | None:intergenic |
TTCAGGGAAACATCTTCTTG+TGG | 0.544489 | 6.2:+89327880 | MS.gene030258:CDS |
GCTGATGAGCTCATTAGCAC+TGG | 0.544843 | 6.2:-89329195 | None:intergenic |
TTAGGTTGAGAGGCATTCAC+CGG | 0.545733 | 6.2:-89334195 | None:intergenic |
CCAGAAAGCAATGGAACTGA+AGG | 0.545837 | 6.2:-89334526 | None:intergenic |
TGTTGTTGCTGTTGGCTGTA+CGG | 0.547922 | 6.2:+89328500 | MS.gene030258:CDS |
TTGCCATCTATCTCTTCCAC+AGG | 0.548149 | 6.2:+89334144 | MS.gene030258:CDS |
TGTTCAATCGGTATCAACTC+AGG | 0.549573 | 6.2:-89335131 | None:intergenic |
AGTTGAGCATTCTGGTGAGC+CGG | 0.552605 | 6.2:+89334176 | MS.gene030258:CDS |
CGGAGCATCTTTAGGTTGAG+AGG | 0.554260 | 6.2:-89334205 | None:intergenic |
AAAGGTATCATTAGAGGAGA+AGG | 0.555301 | 6.2:+89334570 | MS.gene030258:CDS |
TAGATATTCAGTGCATGGTA+TGG | 0.556229 | 6.2:+89335398 | MS.gene030258:CDS |
ATAATTCTTACTTTATGCAG+AGG | 0.557396 | 6.2:-89329869 | None:intergenic |
GTATCATTAGAGGAGAAGGA+TGG | 0.557429 | 6.2:+89334574 | MS.gene030258:CDS |
AATTGATCAAGCTTTGCCAC+TGG | 0.558288 | 6.2:-89334290 | None:intergenic |
ACAGCAACAACATCTAGAGC+AGG | 0.559119 | 6.2:-89328489 | None:intergenic |
ACAATTGTCTGACTCTTCTG+AGG | 0.560074 | 6.2:-89334671 | None:intergenic |
TTCAGTGCATGGTATGGCAG+AGG | 0.561370 | 6.2:+89335404 | MS.gene030258:CDS |
ACCGGTGGCTATGCATCCGA+TGG | 0.562479 | 6.2:-89326834 | None:intergenic |
ATCTGGATGCATAATACAGG+TGG | 0.563602 | 6.2:-89327970 | None:intergenic |
ACTCCGCTCTTTGAAATCCC+AGG | 0.565415 | 6.2:-89333130 | None:intergenic |
TTCGAACCATACAGAGCCAT+CGG | 0.567397 | 6.2:+89326818 | MS.gene030258:CDS |
CATTGCTTCCAAAGAGCCAG+TGG | 0.567511 | 6.2:+89334274 | MS.gene030258:CDS |
TGAACCTCCAGAAGCCAGAA+GGG | 0.567663 | 6.2:-89329067 | None:intergenic |
CTTCGAAAGCGCAAAAGACG+AGG | 0.569001 | 6.2:-89329828 | None:intergenic |
AATATTGTTTGAGCCTGGAA+AGG | 0.570569 | 6.2:+89334552 | MS.gene030258:CDS |
AATTGTTAAATCATCTGCTA+CGG | 0.570851 | 6.2:-89333393 | None:intergenic |
CCACAATCAAACGCAATCAC+AGG | 0.571809 | 6.2:-89331821 | None:intergenic |
CCTTCAATCTGGAATTCACA+GGG | 0.575398 | 6.2:+89332864 | MS.gene030258:CDS |
AAACTCAAAATTATTTCTGG+AGG | 0.575586 | 6.2:-89335183 | None:intergenic |
ATTATCACTGTCCCCAAACA+TGG | 0.576857 | 6.2:+89333607 | MS.gene030258:CDS |
AAATACTCTCATGATAAGTG+TGG | 0.579404 | 6.2:+89332963 | MS.gene030258:CDS |
TTGGAGCAGTCATACTGCTA+AGG | 0.583210 | 6.2:+89327812 | MS.gene030258:CDS |
ATTTGTGCTTCAGTGAGGAT+GGG | 0.584407 | 6.2:+89333483 | MS.gene030258:CDS |
TTGGGCAGTATCCATATGGC+AGG | 0.587236 | 6.2:-89332432 | None:intergenic |
TGGATGCATAATACAGGTGG+GGG | 0.589630 | 6.2:-89327967 | None:intergenic |
ACTCTTAGATATTCAGTGCA+TGG | 0.590916 | 6.2:+89335393 | MS.gene030258:CDS |
AAAGCAATGGAACTGAAGGC+AGG | 0.594870 | 6.2:-89334522 | None:intergenic |
ATGAACCTCCAGAAGCCAGA+AGG | 0.595407 | 6.2:-89329068 | None:intergenic |
TCTTACTTTATGCAGAGGGG+AGG | 0.597348 | 6.2:-89329864 | None:intergenic |
ACAAGTTGATGTGCCTATCA+CGG | 0.597708 | 6.2:+89333583 | MS.gene030258:CDS |
TGAGTCGTTGAACGGAGAAA+GGG | 0.598101 | 6.2:-89326859 | None:intergenic |
GTTGCTGTTGGCTGTACGGA+CGG | 0.598579 | 6.2:+89328504 | MS.gene030258:CDS |
TCTGGATGCATAATACAGGT+GGG | 0.600284 | 6.2:-89327969 | None:intergenic |
AATACTCTCATGATAAGTGT+GGG | 0.600441 | 6.2:+89332964 | MS.gene030258:CDS |
AATATTTCCCCAGAAAGCAA+TGG | 0.601261 | 6.2:-89334535 | None:intergenic |
TGCTAATATATCCATGTTTG+GGG | 0.601394 | 6.2:-89333618 | None:intergenic |
ACTTTCGTAACTGTTTCCGT+TGG | 0.603561 | 6.2:+89326890 | MS.gene030258:CDS |
ATCAAAATGGGGTATACCTG+TGG | 0.603694 | 6.2:+89333654 | MS.gene030258:CDS |
TAACCAATTCTTCATCGTAA+CGG | 0.604068 | 6.2:-89328548 | None:intergenic |
CCTGTGATTGCGTTTGATTG+TGG | 0.607870 | 6.2:+89331821 | MS.gene030258:CDS |
GTTGTAAGAGAGGCTCATGA+TGG | 0.612395 | 6.2:+89329138 | MS.gene030258:CDS |
CAGCAACAACATCTAGAGCA+GGG | 0.614150 | 6.2:-89328488 | None:intergenic |
GCCATCGGATGCATAGCCAC+CGG | 0.614255 | 6.2:+89326833 | MS.gene030258:CDS |
AAATATTCGAGTTTAAGGGA+TGG | 0.616538 | 6.2:+89328436 | MS.gene030258:CDS |
TCAGATTACCATTATAACGA+TGG | 0.618308 | 6.2:-89333200 | None:intergenic |
AATGTCGATTCATATGCAAG+TGG | 0.623688 | 6.2:+89334099 | MS.gene030258:CDS |
AGCAGTGACAGAACCACGCG+TGG | 0.627907 | 6.2:-89328583 | None:intergenic |
GCTCCACTCAGTTGTAAGAG+AGG | 0.629434 | 6.2:+89329128 | MS.gene030258:CDS |
TACAACAGAGAAAAGGCGAA+AGG | 0.631634 | 6.2:-89330484 | None:intergenic |
CTGGATGCATAATACAGGTG+GGG | 0.636974 | 6.2:-89327968 | None:intergenic |
CTCAACTTGAGTATCTCCTG+TGG | 0.637559 | 6.2:-89334160 | None:intergenic |
GATACCGATTGAACAACTCG+TGG | 0.642935 | 6.2:+89335139 | MS.gene030258:CDS |
TCAGTGCATGGTATGGCAGA+GGG | 0.645008 | 6.2:+89335405 | MS.gene030258:CDS |
AGAGCGTGATTGGTGTAATG+TGG | 0.645762 | 6.2:+89332406 | MS.gene030258:CDS |
TTGTGCTCATGATAGTGAAG+TGG | 0.649129 | 6.2:+89332918 | MS.gene030258:CDS |
GAGCCTCTCTTACAACTGAG+TGG | 0.655771 | 6.2:-89329131 | None:intergenic |
AACAGATTTGTGCTTCAGTG+AGG | 0.655929 | 6.2:+89333478 | MS.gene030258:CDS |
AGCAACAACATCTAGAGCAG+GGG | 0.656111 | 6.2:-89328487 | None:intergenic |
AATTCTGATCTAACACAATG+TGG | 0.658285 | 6.2:-89327941 | None:intergenic |
ACTTGTGCCATCAGTGCTTG+TGG | 0.658675 | 6.2:+89332793 | MS.gene030258:CDS |
TTCGAAAGCGCAAAAGACGA+GGG | 0.661264 | 6.2:-89329827 | None:intergenic |
GCTCATGATAGTGAAGTGGT+TGG | 0.662823 | 6.2:+89332922 | MS.gene030258:CDS |
AATCTGAAAAGCTTTACCAA+CGG | 0.665502 | 6.2:-89326906 | None:intergenic |
TACCCATGTTGATCAAAATG+GGG | 0.668020 | 6.2:+89333643 | MS.gene030258:CDS |
AATTCTTACTTTATGCAGAG+GGG | 0.668934 | 6.2:-89329867 | None:intergenic |
AGCGAAAGTGAAATCACGAT+AGG | 0.670102 | 6.2:-89326999 | None:intergenic |
GAACCTCCAGAAGCCAGAAG+GGG | 0.671328 | 6.2:-89329066 | None:intergenic |
GTTTCAAAGTACGAGGTGTG+TGG | 0.671775 | 6.2:+89335438 | MS.gene030258:CDS |
ATAAGTTGTTTCAAAGTACG+AGG | 0.697039 | 6.2:+89335431 | MS.gene030258:CDS |
TTGAACGGAGAAAGGGACAC+CGG | 0.699488 | 6.2:-89326852 | None:intergenic |
AGGCCTGGGATTTCAAAGAG+CGG | 0.706924 | 6.2:+89333127 | MS.gene030258:intron |
AACGGAGAAAGGGACACCGG+TGG | 0.717097 | 6.2:-89326849 | None:intergenic |
ATACTGCCCAAGCATATGTG+TGG | 0.722172 | 6.2:+89332444 | MS.gene030258:CDS |
CTTCAATCTGGAATTCACAG+GGG | 0.778696 | 6.2:+89332865 | MS.gene030258:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 89326809 | 89335495 | 89326809 | ID=MS.gene030258 |
chr6.2 | mRNA | 89326809 | 89335495 | 89326809 | ID=MS.gene030258.t1;Parent=MS.gene030258 |
chr6.2 | exon | 89326809 | 89327063 | 89326809 | ID=MS.gene030258.t1.exon1;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89326809 | 89327063 | 89326809 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89327804 | 89328007 | 89327804 | ID=MS.gene030258.t1.exon2;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89327804 | 89328007 | 89327804 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89328378 | 89328621 | 89328378 | ID=MS.gene030258.t1.exon3;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89328378 | 89328621 | 89328378 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89329058 | 89329233 | 89329058 | ID=MS.gene030258.t1.exon4;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89329058 | 89329233 | 89329058 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89329798 | 89329880 | 89329798 | ID=MS.gene030258.t1.exon5;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89329798 | 89329880 | 89329798 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89330437 | 89330509 | 89330437 | ID=MS.gene030258.t1.exon6;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89330437 | 89330509 | 89330437 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89330843 | 89330908 | 89330843 | ID=MS.gene030258.t1.exon7;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89330843 | 89330908 | 89330843 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89331800 | 89331842 | 89331800 | ID=MS.gene030258.t1.exon8;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89331800 | 89331842 | 89331800 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89332396 | 89332535 | 89332396 | ID=MS.gene030258.t1.exon9;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89332396 | 89332535 | 89332396 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89332793 | 89333005 | 89332793 | ID=MS.gene030258.t1.exon10;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89332793 | 89333005 | 89332793 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89333129 | 89333213 | 89333129 | ID=MS.gene030258.t1.exon11;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89333129 | 89333213 | 89333129 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89333381 | 89333675 | 89333381 | ID=MS.gene030258.t1.exon12;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89333381 | 89333675 | 89333381 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89334068 | 89334326 | 89334068 | ID=MS.gene030258.t1.exon13;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89334068 | 89334326 | 89334068 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89334469 | 89334691 | 89334469 | ID=MS.gene030258.t1.exon14;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89334469 | 89334691 | 89334469 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89335018 | 89335235 | 89335018 | ID=MS.gene030258.t1.exon15;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89335018 | 89335235 | 89335018 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
chr6.2 | exon | 89335340 | 89335495 | 89335340 | ID=MS.gene030258.t1.exon16;Parent=MS.gene030258.t1 |
chr6.2 | CDS | 89335340 | 89335495 | 89335340 | ID=cds.MS.gene030258.t1;Parent=MS.gene030258.t1 |
Gene Sequence |
Protein sequence |