Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66284.t1 | XP_024641079.1 | 97.8 | 910 | 19 | 1 | 1 | 910 | 1 | 909 | 0.00E+00 | 1784.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66284.t1 | O14053 | 35.0 | 904 | 527 | 16 | 3 | 891 | 23 | 880 | 4.5e-153 | 543.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66284.t1 | A0A396HIM7 | 97.8 | 910 | 19 | 1 | 1 | 910 | 1 | 909 | 0.0e+00 | 1784.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66284.t1 | MTR_6g093060 | 97.770 | 897 | 19 | 1 | 1 | 897 | 1 | 896 | 0.0 | 1815 |
MS.gene66284.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 2.51e-12 | 71.6 |
MS.gene66284.t1 | MTR_6g004040 | 25.735 | 272 | 171 | 10 | 81 | 342 | 4 | 254 | 2.95e-12 | 71.2 |
MS.gene66284.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 3.60e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66284.t1 | AT4G04940 | 72.637 | 910 | 245 | 3 | 1 | 907 | 1 | 909 | 0.0 | 1392 |
MS.gene66284.t1 | AT4G04940 | 71.734 | 796 | 221 | 3 | 115 | 907 | 1 | 795 | 0.0 | 1205 |
MS.gene66284.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 2.66e-15 | 81.3 |
MS.gene66284.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 6.44e-14 | 76.6 |
MS.gene66284.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 3.45e-15 | 80.9 |
MS.gene66284.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 7.39e-14 | 76.6 |
MS.gene66284.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 3.73e-15 | 80.9 |
MS.gene66284.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 7.40e-14 | 76.6 |
MS.gene66284.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 13 | 169 | 9.35e-15 | 79.3 |
MS.gene66284.t1 | AT1G11160 | 28.947 | 190 | 125 | 6 | 154 | 342 | 31 | 211 | 8.75e-14 | 76.3 |
MS.gene66284.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 9.88e-15 | 79.3 |
MS.gene66284.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.79e-14 | 78.6 |
MS.gene66284.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 9.89e-15 | 79.3 |
MS.gene66284.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 2.17e-14 | 78.2 |
MS.gene66284.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 1.03e-14 | 79.3 |
MS.gene66284.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 2.04e-14 | 78.6 |
MS.gene66284.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.56e-14 | 78.6 |
MS.gene66284.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.53e-11 | 67.4 |
MS.gene66284.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.60e-14 | 78.6 |
MS.gene66284.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.34e-11 | 67.4 |
MS.gene66284.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.60e-14 | 78.6 |
MS.gene66284.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.34e-11 | 67.4 |
MS.gene66284.t1 | AT5G08390 | 27.068 | 266 | 175 | 8 | 81 | 342 | 4 | 254 | 1.79e-14 | 78.6 |
MS.gene66284.t1 | AT5G08390 | 24.204 | 157 | 116 | 3 | 472 | 626 | 57 | 212 | 2.07e-11 | 68.6 |
MS.gene66284.t1 | AT2G26490 | 23.588 | 301 | 188 | 12 | 59 | 325 | 99 | 391 | 8.18e-11 | 65.9 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCAGTTCCATTGCTTTC+TGG | -0.057605 | 6.4:-63866389 | MS.gene66284:CDS |
TAGAAACTCAAAATTATTTC+TGG | 0.114239 | 6.4:+63865730 | None:intergenic |
TGGATGGAAGTCTTAGAATT+TGG | 0.184320 | 6.4:-63867387 | MS.gene66284:CDS |
GGACTCTTCAAGCATGAATT+TGG | 0.196098 | 6.4:+63865436 | None:intergenic |
GATTTCACTTTCGCTGCTTT+TGG | 0.205987 | 6.4:-63873923 | MS.gene66284:CDS |
GGACAGCCCCTTCTGGCTTC+TGG | 0.209939 | 6.4:-63871847 | MS.gene66284:CDS |
ACTACCCATGTTGATCAAAA+TGG | 0.216761 | 6.4:-63867274 | MS.gene66284:CDS |
CTTCAGTTCCATTGCTTTCT+GGG | 0.219128 | 6.4:-63866388 | MS.gene66284:CDS |
TCCTCTAATGATACCTTTCC+AGG | 0.223878 | 6.4:+63866350 | None:intergenic |
AGAACAACCAACATCCAATT+TGG | 0.240866 | 6.4:+63867755 | None:intergenic |
GCATGTAAACAGGTTCTTAT+TGG | 0.255726 | 6.4:-63872537 | MS.gene66284:intron |
GCAAGAGAAGTAATCTTCTT+AGG | 0.274440 | 6.4:+63873956 | None:intergenic |
TATTCTCAGTCTTGATGTTC+AGG | 0.286517 | 6.4:-63873039 | MS.gene66284:CDS |
TTGCTAATATATCCATGTTT+GGG | 0.291782 | 6.4:+63867296 | None:intergenic |
GAGGAAGTCCTAACCTTTAC+AGG | 0.295653 | 6.4:+63868388 | None:intergenic |
AAGCTTTGCCACTGGCTCTT+TGG | 0.298514 | 6.4:+63866633 | None:intergenic |
CTGGCTTCTGGAGGTTCATC+TGG | 0.306643 | 6.4:-63871835 | MS.gene66284:CDS |
TCCAGATACTTACCTTAATA+AGG | 0.315613 | 6.4:-63872916 | MS.gene66284:intron |
ATCTCCATCAACTCTGGATA+TGG | 0.316374 | 6.4:-63865867 | MS.gene66284:CDS |
ACCACCAGCTGTCCCTAAAA+TGG | 0.318292 | 6.4:+63868091 | None:intergenic |
CATCTTCTTGTGGGCATTCA+AGG | 0.319568 | 6.4:-63873012 | MS.gene66284:CDS |
GTATTTGCTTATCTTGAGTT+AGG | 0.320026 | 6.4:+63866682 | None:intergenic |
AGGAAAGCCGGAGCATCTTT+AGG | 0.327151 | 6.4:+63866702 | None:intergenic |
ATGGCTTCTTTCGTCCAGTA+TGG | 0.331971 | 6.4:-63867407 | MS.gene66284:CDS |
GTTGCTAATATATCCATGTT+TGG | 0.333368 | 6.4:+63867295 | None:intergenic |
GGATGGAAGTCTTAGAATTT+GGG | 0.333460 | 6.4:-63867386 | MS.gene66284:CDS |
CATGTAAACAGGTTCTTATT+GGG | 0.334236 | 6.4:-63872536 | MS.gene66284:intron |
TTTAGATGGACAGCCCCTTC+TGG | 0.340805 | 6.4:-63871854 | MS.gene66284:intron |
GCGGAGTCTTAAATCCAAAT+TGG | 0.344934 | 6.4:-63867769 | MS.gene66284:CDS |
GATACTCAAGTTGAGCATTC+TGG | 0.353256 | 6.4:-63866747 | MS.gene66284:CDS |
ATTGAAGAATATAGAGAAAA+CGG | 0.358795 | 6.4:+63866267 | None:intergenic |
AAGATGTGCTCACCTTATTA+AGG | 0.360143 | 6.4:+63872904 | None:intergenic |
ATTGTTTACCATCGTTATAA+TGG | 0.363546 | 6.4:-63867723 | MS.gene66284:intron |
ACCTTATTAAGGTAAGTATC+TGG | 0.369983 | 6.4:+63872915 | None:intergenic |
AATGAAAGTGTAACTAAATC+AGG | 0.370674 | 6.4:+63866660 | None:intergenic |
AGACTTGTTCGTAAATTTGA+AGG | 0.377882 | 6.4:-63867475 | MS.gene66284:CDS |
CATCCGTTACGATGAAGAAT+TGG | 0.379794 | 6.4:-63872358 | MS.gene66284:CDS |
CCCTGTGAATTCCAGATTGA+AGG | 0.385512 | 6.4:+63868051 | None:intergenic |
CTACCCATGTTGATCAAAAT+GGG | 0.390528 | 6.4:-63867273 | MS.gene66284:CDS |
GTCCTAACCTTTACAGGCGT+TGG | 0.395238 | 6.4:+63868394 | None:intergenic |
CTTGCATATGAATCGACATT+TGG | 0.398727 | 6.4:+63866819 | None:intergenic |
TGTTATTAGCATATGGAATC+TGG | 0.399911 | 6.4:-63871812 | MS.gene66284:CDS |
GACTCTTCAAGCATGAATTT+GGG | 0.401326 | 6.4:+63865437 | None:intergenic |
GATCAATTTAGACATTATAA+AGG | 0.409214 | 6.4:-63866610 | MS.gene66284:intron |
ACACATTCTTTCTGCTGGCC+AGG | 0.414729 | 6.4:-63870453 | MS.gene66284:CDS |
AGCAAGGCACTATGCAGCTT+TGG | 0.417073 | 6.4:-63872509 | MS.gene66284:CDS |
CATCTGGTGTTATTAGCATA+TGG | 0.418142 | 6.4:-63871819 | MS.gene66284:CDS |
GTGAAATCGTTATTGTTGTT+TGG | 0.420707 | 6.4:-63873068 | MS.gene66284:CDS |
GAAAAGTTCAACCTTCAATC+TGG | 0.422796 | 6.4:-63868062 | MS.gene66284:CDS |
TTGAAGAATATAGAGAAAAC+GGG | 0.427715 | 6.4:+63866268 | None:intergenic |
GCTCTAGATGTTGTTGCTGT+TGG | 0.443800 | 6.4:-63872411 | MS.gene66284:CDS |
CTGAAATTAGAGAGCGTGAT+TGG | 0.445206 | 6.4:-63868519 | MS.gene66284:CDS |
TCTAAGACTTCCATCCATAC+TGG | 0.450343 | 6.4:+63867393 | None:intergenic |
GCCTGGAAAGGTATCATTAG+AGG | 0.455965 | 6.4:-63866351 | MS.gene66284:CDS |
GAAGTCTCCACACATATGCT+TGG | 0.457584 | 6.4:+63868464 | None:intergenic |
GGGATATCAAGGAGATATAA+AGG | 0.459764 | 6.4:-63867931 | MS.gene66284:intron |
TTGAGTCGTTGAACGGAGAA+AGG | 0.463350 | 6.4:+63874070 | None:intergenic |
GGGGAAATATTGTTTGAGCC+TGG | 0.465198 | 6.4:-63866368 | MS.gene66284:CDS |
GTTAATAGGATCAACAAAGT+AGG | 0.466327 | 6.4:-63870079 | MS.gene66284:intron |
TCTTCATCTTGCCAGATACA+TGG | 0.467591 | 6.4:-63865591 | MS.gene66284:intron |
GACTGCTAGAGAACATTGCC+TGG | 0.469186 | 6.4:+63866841 | None:intergenic |
ATAATGAATTTCAGGTCTCC+TGG | 0.469274 | 6.4:-63867548 | MS.gene66284:intron |
AGATACATGGCGAGACAATT+CGG | 0.470210 | 6.4:-63865578 | MS.gene66284:CDS |
CTCTCAACCTAAAGATGCTC+CGG | 0.471862 | 6.4:-63866709 | MS.gene66284:CDS |
AATTAGATTGTTTGATGTTG+TGG | 0.472460 | 6.4:-63867503 | MS.gene66284:CDS |
TCTAACACAATGTGGCCAAC+AGG | 0.474624 | 6.4:+63872969 | None:intergenic |
GACAGTGATAATGCCGTGAT+AGG | 0.477724 | 6.4:+63867319 | None:intergenic |
AAGTCTCCACACATATGCTT+GGG | 0.483404 | 6.4:+63868465 | None:intergenic |
TATATTCGAGTTTAAGGGAT+GGG | 0.483474 | 6.4:-63872466 | MS.gene66284:CDS |
TATGGAATCTGGAAAAGAAA+AGG | 0.484303 | 6.4:-63871801 | MS.gene66284:CDS |
CTTAAATCCAAATTGGATGT+TGG | 0.485333 | 6.4:-63867762 | MS.gene66284:CDS |
ATGATAAGTGTGGGATATCA+AGG | 0.485504 | 6.4:-63867942 | MS.gene66284:CDS |
TCAGGGAAACATCTTCTTGT+GGG | 0.486721 | 6.4:-63873021 | MS.gene66284:CDS |
TCTCCTGTGGAAGAGATAGA+TGG | 0.486932 | 6.4:+63866768 | None:intergenic |
TTCAGTTCCATTGCTTTCTG+GGG | 0.487757 | 6.4:-63866387 | MS.gene66284:CDS |
ACCTTCAATCTGGAATTCAC+AGG | 0.487997 | 6.4:-63868052 | MS.gene66284:CDS |
GGAAGACACATTCTTTCTGC+TGG | 0.491112 | 6.4:-63870458 | MS.gene66284:CDS |
TGAAAATCCAACGCCTGTAA+AGG | 0.491515 | 6.4:-63868401 | MS.gene66284:intron |
GGAACTGAAGGCAGGAAGAA+TGG | 0.492639 | 6.4:+63866401 | None:intergenic |
CATCAAGGATCTGAAGCATT+CGG | 0.495114 | 6.4:+63865840 | None:intergenic |
GTAATCTTCTTAGGAAGTTG+AGG | 0.497363 | 6.4:+63873965 | None:intergenic |
AATCATCTGCTACGGTAGCC+AGG | 0.502240 | 6.4:+63867530 | None:intergenic |
TAATGTGGTTACCTGCCATA+TGG | 0.502599 | 6.4:-63868494 | MS.gene66284:CDS |
GATTTGTGCTTCAGTGAGGA+TGG | 0.509567 | 6.4:-63867433 | MS.gene66284:CDS |
GATGAGACAATACAGGAGAT+AGG | 0.509616 | 6.4:+63872438 | None:intergenic |
AAAGGCGAAAGGCTCGATCC+TGG | 0.510767 | 6.4:+63870435 | None:intergenic |
CAGCCCCTTCTGGCTTCTGG+AGG | 0.511831 | 6.4:-63871844 | MS.gene66284:CDS |
TTATCTTGAGTTAGGAAAGC+CGG | 0.514516 | 6.4:+63866690 | None:intergenic |
AATTCCATATCCAGAGTTGA+TGG | 0.514868 | 6.4:+63865863 | None:intergenic |
AGGATTATCTCCATCAACTC+TGG | 0.515928 | 6.4:-63865873 | MS.gene66284:CDS |
ATTCTCAGTCTTGATGTTCA+GGG | 0.516449 | 6.4:-63873038 | MS.gene66284:CDS |
GCATTCACTGATTATATCAA+AGG | 0.518837 | 6.4:-63865893 | MS.gene66284:CDS |
AGCAGGGGATGAGACAATAC+AGG | 0.520849 | 6.4:+63872431 | None:intergenic |
TGTTCAATCGGTACCAACTC+AGG | 0.522291 | 6.4:+63865785 | None:intergenic |
AAGAACAATCTTGTTCCTGT+TGG | 0.524603 | 6.4:-63872984 | MS.gene66284:CDS |
ACTGCTTTATCTTTCAGCAC+TGG | 0.525692 | 6.4:-63872303 | MS.gene66284:intron |
GCTTCAGTGAGGATGGGAAA+TGG | 0.527395 | 6.4:-63867426 | MS.gene66284:CDS |
TTAATAGGATCAACAAAGTA+GGG | 0.528258 | 6.4:-63870078 | MS.gene66284:intron |
CTTCTTTCGTCCAGTATGGA+TGG | 0.530251 | 6.4:-63867403 | MS.gene66284:CDS |
AGTATCTGGATGCATAATAC+AGG | 0.530387 | 6.4:+63872929 | None:intergenic |
AAAATTGCCACAAGCACTGA+TGG | 0.530939 | 6.4:+63868115 | None:intergenic |
ATGCAACCGATGGCTCTGTA+TGG | 0.531148 | 6.4:+63874106 | None:intergenic |
ATATAGAGAAAACGGGATGA+TGG | 0.533892 | 6.4:+63866275 | None:intergenic |
GCTCATCATTGTCGTCATCA+AGG | 0.534047 | 6.4:+63865825 | None:intergenic |
GTTCTTATTGGGAGTGAGCA+AGG | 0.535121 | 6.4:-63872525 | MS.gene66284:CDS |
ATGCTTGGGCAGTATCCATA+TGG | 0.536649 | 6.4:+63868479 | None:intergenic |
TTCATATGCAAGTGGAAAAG+AGG | 0.537479 | 6.4:-63866808 | MS.gene66284:CDS |
TTCAGTGTTGAGTCGTTGAA+CGG | 0.537582 | 6.4:+63874063 | None:intergenic |
TTCGAACCATACAGAGCCAT+CGG | 0.538150 | 6.4:-63874112 | MS.gene66284:CDS |
TAATTCTTACTTTATGCAGA+GGG | 0.539368 | 6.4:+63871039 | None:intergenic |
TAATCCACGAGTTGTTCAAT+CGG | 0.539392 | 6.4:+63865773 | None:intergenic |
CAACCTGTACAACAGAGAAA+AGG | 0.541536 | 6.4:+63870417 | None:intergenic |
TTCAGGGAAACATCTTCTTG+TGG | 0.544489 | 6.4:-63873022 | MS.gene66284:CDS |
GCTGATGAGCTCATTAGCAC+TGG | 0.544843 | 6.4:+63871712 | None:intergenic |
TTAGGTTGAGAGGCATTCAC+CGG | 0.545733 | 6.4:+63866720 | None:intergenic |
CCAGAAAGCAATGGAACTGA+AGG | 0.545837 | 6.4:+63866389 | None:intergenic |
TGTTGTTGCTGTTGGCTGTA+CGG | 0.547922 | 6.4:-63872403 | MS.gene66284:CDS |
TTGCCATCTATCTCTTCCAC+AGG | 0.548149 | 6.4:-63866771 | MS.gene66284:CDS |
AGTTGAGCATTCTGGTGAGC+CGG | 0.552605 | 6.4:-63866739 | MS.gene66284:CDS |
CGGAGCATCTTTAGGTTGAG+AGG | 0.554260 | 6.4:+63866710 | None:intergenic |
AAAGGTATCATTAGAGGAGA+AGG | 0.555301 | 6.4:-63866345 | MS.gene66284:CDS |
TAGATATTCAGTGCATGGTA+TGG | 0.556229 | 6.4:-63865518 | MS.gene66284:CDS |
ATAATTCTTACTTTATGCAG+AGG | 0.557396 | 6.4:+63871038 | None:intergenic |
GTATCATTAGAGGAGAAGGA+TGG | 0.557429 | 6.4:-63866341 | MS.gene66284:CDS |
AATTGATCAAGCTTTGCCAC+TGG | 0.558288 | 6.4:+63866625 | None:intergenic |
ACAGCAACAACATCTAGAGC+AGG | 0.559119 | 6.4:+63872414 | None:intergenic |
ACAATTGTCTGACTCTTCTG+AGG | 0.560074 | 6.4:+63866244 | None:intergenic |
TTCAGTGCATGGTATGGCAG+AGG | 0.561370 | 6.4:-63865512 | MS.gene66284:CDS |
ATCTGGATGCATAATACAGG+TGG | 0.563602 | 6.4:+63872932 | None:intergenic |
ACTCCGCTCTTTGAAATCCC+AGG | 0.565415 | 6.4:+63867785 | None:intergenic |
CATTGCTTCCAAAGAGCCAG+TGG | 0.567511 | 6.4:-63866641 | MS.gene66284:CDS |
TGAACCTCCAGAAGCCAGAA+GGG | 0.567663 | 6.4:+63871840 | None:intergenic |
CTTCGAAAGCGCAAAAGACG+AGG | 0.569001 | 6.4:+63871079 | None:intergenic |
AATATTGTTTGAGCCTGGAA+AGG | 0.570569 | 6.4:-63866363 | MS.gene66284:CDS |
AATTGTTAAATCATCTGCTA+CGG | 0.570851 | 6.4:+63867522 | None:intergenic |
CCACAATCAAACGCAATCAC+AGG | 0.571809 | 6.4:+63869094 | None:intergenic |
ACCGGTGGCTATGCAACCGA+TGG | 0.574451 | 6.4:+63874096 | None:intergenic |
CCTTCAATCTGGAATTCACA+GGG | 0.575398 | 6.4:-63868051 | MS.gene66284:CDS |
AAACTCAAAATTATTTCTGG+AGG | 0.575586 | 6.4:+63865733 | None:intergenic |
ATTATCACTGTCCCCAAACA+TGG | 0.576857 | 6.4:-63867308 | MS.gene66284:CDS |
AAATACTCTCATGATAAGTG+TGG | 0.579404 | 6.4:-63867952 | MS.gene66284:CDS |
TTGGAGCAGTCATACTGCTA+AGG | 0.583210 | 6.4:-63873090 | MS.gene66284:CDS |
ATTTGTGCTTCAGTGAGGAT+GGG | 0.584407 | 6.4:-63867432 | MS.gene66284:CDS |
TTGGGCAGTATCCATATGGC+AGG | 0.587236 | 6.4:+63868483 | None:intergenic |
TGGATGCATAATACAGGTGG+GGG | 0.589630 | 6.4:+63872935 | None:intergenic |
ACTCTTAGATATTCAGTGCA+TGG | 0.590916 | 6.4:-63865523 | MS.gene66284:CDS |
GCCATCGGTTGCATAGCCAC+CGG | 0.594793 | 6.4:-63874097 | MS.gene66284:CDS |
AAAGCAATGGAACTGAAGGC+AGG | 0.594870 | 6.4:+63866393 | None:intergenic |
ATGAACCTCCAGAAGCCAGA+AGG | 0.595407 | 6.4:+63871839 | None:intergenic |
TCTTACTTTATGCAGAGGGG+AGG | 0.597348 | 6.4:+63871043 | None:intergenic |
ACAAGTTGATGTGCCTATCA+CGG | 0.597708 | 6.4:-63867332 | MS.gene66284:CDS |
TGAGTCGTTGAACGGAGAAA+GGG | 0.598101 | 6.4:+63874071 | None:intergenic |
GTTGCTGTTGGCTGTACGGA+CGG | 0.598579 | 6.4:-63872399 | MS.gene66284:CDS |
TCTGGATGCATAATACAGGT+GGG | 0.600284 | 6.4:+63872933 | None:intergenic |
AATACTCTCATGATAAGTGT+GGG | 0.600441 | 6.4:-63867951 | MS.gene66284:CDS |
AATATTTCCCCAGAAAGCAA+TGG | 0.601261 | 6.4:+63866380 | None:intergenic |
TGCTAATATATCCATGTTTG+GGG | 0.601394 | 6.4:+63867297 | None:intergenic |
ATCAAAATGGGGTATACCTG+TGG | 0.603694 | 6.4:-63867261 | MS.gene66284:intron |
TAACCAATTCTTCATCGTAA+CGG | 0.604068 | 6.4:+63872355 | None:intergenic |
AGATGAGAAGAGACCTGAGT+TGG | 0.604190 | 6.4:-63865798 | MS.gene66284:CDS |
CCTGTGATTGCGTTTGATTG+TGG | 0.607870 | 6.4:-63869094 | MS.gene66284:intron |
GTTGTAAGAGAGGCTCATGA+TGG | 0.612395 | 6.4:-63871769 | MS.gene66284:CDS |
CAGCAACAACATCTAGAGCA+GGG | 0.614150 | 6.4:+63872415 | None:intergenic |
TCAGATTACCATTATAACGA+TGG | 0.618308 | 6.4:+63867715 | None:intergenic |
AATGTCGATTCATATGCAAG+TGG | 0.623688 | 6.4:-63866816 | MS.gene66284:CDS |
ACTTTCGTGACTGTTTCCGT+TGG | 0.624843 | 6.4:-63874040 | MS.gene66284:CDS |
ATATATTCGAGTTTAAGGGA+TGG | 0.627322 | 6.4:-63872467 | MS.gene66284:CDS |
AGCAGTGACAGAACCACGCG+TGG | 0.627907 | 6.4:+63872320 | None:intergenic |
GCTCCACTCAGTTGTAAGAG+AGG | 0.629434 | 6.4:-63871779 | MS.gene66284:CDS |
TACAACAGAGAAAAGGCGAA+AGG | 0.631634 | 6.4:+63870424 | None:intergenic |
CTGGATGCATAATACAGGTG+GGG | 0.636974 | 6.4:+63872934 | None:intergenic |
CTCAACTTGAGTATCTCCTG+TGG | 0.637559 | 6.4:+63866755 | None:intergenic |
TCAGTGCATGGTATGGCAGA+GGG | 0.645008 | 6.4:-63865511 | MS.gene66284:CDS |
GGTACCGATTGAACAACTCG+TGG | 0.645231 | 6.4:-63865777 | MS.gene66284:CDS |
AGAGCGTGATTGGTGTAATG+TGG | 0.645762 | 6.4:-63868509 | MS.gene66284:CDS |
TTGTGCTCATGATAGTGAAG+TGG | 0.649129 | 6.4:-63867997 | MS.gene66284:CDS |
GAGCCTCTCTTACAACTGAG+TGG | 0.655771 | 6.4:+63871776 | None:intergenic |
AACAGATTTGTGCTTCAGTG+AGG | 0.655929 | 6.4:-63867437 | MS.gene66284:CDS |
AGCAACAACATCTAGAGCAG+GGG | 0.656111 | 6.4:+63872416 | None:intergenic |
AATTCTGATCTAACACAATG+TGG | 0.658285 | 6.4:+63872961 | None:intergenic |
ACTTGTGCCATCAGTGCTTG+TGG | 0.658675 | 6.4:-63868122 | MS.gene66284:CDS |
TTCGAAAGCGCAAAAGACGA+GGG | 0.661264 | 6.4:+63871080 | None:intergenic |
GCTCATGATAGTGAAGTGGT+TGG | 0.662823 | 6.4:-63867993 | MS.gene66284:CDS |
AATCTGAAAAGCTTTACCAA+CGG | 0.665502 | 6.4:+63874024 | None:intergenic |
TACCCATGTTGATCAAAATG+GGG | 0.668020 | 6.4:-63867272 | MS.gene66284:CDS |
AATTCTTACTTTATGCAGAG+GGG | 0.668934 | 6.4:+63871040 | None:intergenic |
AGCGAAAGTGAAATCACGAT+AGG | 0.670102 | 6.4:+63873931 | None:intergenic |
GAACCTCCAGAAGCCAGAAG+GGG | 0.671328 | 6.4:+63871841 | None:intergenic |
GTTTCAAAGTACGAGGTGTG+TGG | 0.671775 | 6.4:-63865478 | MS.gene66284:CDS |
ATAAGTTGTTTCAAAGTACG+AGG | 0.697039 | 6.4:-63865485 | MS.gene66284:CDS |
TTGAACGGAGAAAGGGACAC+CGG | 0.699488 | 6.4:+63874078 | None:intergenic |
AGGCCTGGGATTTCAAAGAG+CGG | 0.706924 | 6.4:-63867788 | MS.gene66284:CDS |
AACGGAGAAAGGGACACCGG+TGG | 0.717097 | 6.4:+63874081 | None:intergenic |
ATACTGCCCAAGCATATGTG+TGG | 0.722172 | 6.4:-63868471 | MS.gene66284:CDS |
CTTCAATCTGGAATTCACAG+GGG | 0.778696 | 6.4:-63868050 | MS.gene66284:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 63865443 | 63874143 | 63865443 | ID=MS.gene66284 |
chr6.4 | mRNA | 63865443 | 63874143 | 63865443 | ID=MS.gene66284.t1;Parent=MS.gene66284 |
chr6.4 | exon | 63873889 | 63874143 | 63873889 | ID=MS.gene66284.t1.exon1;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63873889 | 63874143 | 63873889 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63872917 | 63873120 | 63872917 | ID=MS.gene66284.t1.exon2;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63872917 | 63873120 | 63872917 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63872304 | 63872547 | 63872304 | ID=MS.gene66284.t1.exon3;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63872304 | 63872547 | 63872304 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63871696 | 63871871 | 63871696 | ID=MS.gene66284.t1.exon4;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63871696 | 63871871 | 63871696 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63871049 | 63871131 | 63871049 | ID=MS.gene66284.t1.exon5;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63871049 | 63871131 | 63871049 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63870421 | 63870493 | 63870421 | ID=MS.gene66284.t1.exon6;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63870421 | 63870493 | 63870421 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63870028 | 63870093 | 63870028 | ID=MS.gene66284.t1.exon7;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63870028 | 63870093 | 63870028 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63869095 | 63869137 | 63869095 | ID=MS.gene66284.t1.exon8;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63869095 | 63869137 | 63869095 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63868402 | 63868541 | 63868402 | ID=MS.gene66284.t1.exon9;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63868402 | 63868541 | 63868402 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63867932 | 63868144 | 63867932 | ID=MS.gene66284.t1.exon10;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63867932 | 63868144 | 63867932 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63867724 | 63867808 | 63867724 | ID=MS.gene66284.t1.exon11;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63867724 | 63867808 | 63867724 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63867262 | 63867556 | 63867262 | ID=MS.gene66284.t1.exon12;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63867262 | 63867556 | 63867262 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63866611 | 63866869 | 63866611 | ID=MS.gene66284.t1.exon13;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63866611 | 63866869 | 63866611 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63866246 | 63866468 | 63866246 | ID=MS.gene66284.t1.exon14;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63866246 | 63866468 | 63866246 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63865703 | 63865920 | 63865703 | ID=MS.gene66284.t1.exon15;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63865703 | 63865920 | 63865703 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
chr6.4 | exon | 63865443 | 63865598 | 63865443 | ID=MS.gene66284.t1.exon16;Parent=MS.gene66284.t1 |
chr6.4 | CDS | 63865443 | 63865598 | 63865443 | ID=cds.MS.gene66284.t1;Parent=MS.gene66284.t1 |
Gene Sequence |
Protein sequence |