Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75111.t1 | XP_024641079.1 | 96.7 | 910 | 15 | 2 | 1 | 896 | 1 | 909 | 0.00E+00 | 1751.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75111.t1 | O14053 | 34.4 | 904 | 518 | 17 | 3 | 877 | 23 | 880 | 4.7e-147 | 523.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75111.t1 | A0A396HIM7 | 96.7 | 910 | 15 | 2 | 1 | 896 | 1 | 909 | 0.0e+00 | 1751.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75111.t1 | MTR_6g093060 | 96.656 | 897 | 15 | 2 | 1 | 883 | 1 | 896 | 0.0 | 1782 |
MS.gene75111.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 67 | 328 | 3 | 253 | 1.35e-12 | 72.4 |
MS.gene75111.t1 | MTR_2g012630 | 25.468 | 267 | 178 | 9 | 67 | 328 | 3 | 253 | 1.92e-12 | 72.0 |
MS.gene75111.t1 | MTR_2g012630 | 23.418 | 158 | 118 | 3 | 457 | 612 | 55 | 211 | 9.35e-11 | 66.2 |
MS.gene75111.t1 | MTR_6g004040 | 25.735 | 272 | 171 | 10 | 67 | 328 | 4 | 254 | 1.93e-12 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75111.t1 | AT4G04940 | 71.099 | 910 | 245 | 4 | 1 | 893 | 1 | 909 | 0.0 | 1356 |
MS.gene75111.t1 | AT4G04940 | 71.518 | 797 | 223 | 3 | 101 | 894 | 1 | 796 | 0.0 | 1204 |
MS.gene75111.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 67 | 328 | 3 | 253 | 1.80e-15 | 81.6 |
MS.gene75111.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 457 | 612 | 55 | 211 | 2.36e-14 | 78.2 |
MS.gene75111.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 67 | 328 | 3 | 253 | 1.97e-15 | 81.6 |
MS.gene75111.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 457 | 612 | 55 | 211 | 2.49e-14 | 78.2 |
MS.gene75111.t1 | AT1G61210 | 26.740 | 273 | 167 | 11 | 67 | 328 | 3 | 253 | 2.54e-15 | 81.3 |
MS.gene75111.t1 | AT1G61210 | 26.875 | 160 | 110 | 4 | 457 | 612 | 55 | 211 | 2.56e-14 | 78.2 |
MS.gene75111.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 457 | 612 | 13 | 169 | 3.51e-15 | 80.9 |
MS.gene75111.t1 | AT1G11160 | 28.947 | 190 | 125 | 6 | 140 | 328 | 31 | 211 | 4.86e-14 | 77.0 |
MS.gene75111.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 457 | 612 | 55 | 211 | 3.87e-15 | 80.9 |
MS.gene75111.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 67 | 328 | 3 | 253 | 1.04e-14 | 79.3 |
MS.gene75111.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 457 | 612 | 55 | 211 | 4.00e-15 | 80.5 |
MS.gene75111.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 67 | 328 | 3 | 253 | 1.06e-14 | 79.3 |
MS.gene75111.t1 | AT1G11160 | 28.125 | 160 | 108 | 4 | 457 | 612 | 55 | 211 | 4.08e-15 | 80.5 |
MS.gene75111.t1 | AT1G11160 | 25.468 | 267 | 178 | 9 | 67 | 328 | 3 | 253 | 1.17e-14 | 79.3 |
MS.gene75111.t1 | AT5G08390 | 27.068 | 266 | 175 | 8 | 67 | 328 | 4 | 254 | 9.35e-15 | 79.3 |
MS.gene75111.t1 | AT5G08390 | 24.204 | 157 | 116 | 3 | 458 | 612 | 57 | 212 | 6.83e-12 | 70.1 |
MS.gene75111.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 67 | 328 | 4 | 254 | 1.07e-14 | 79.0 |
MS.gene75111.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 458 | 612 | 57 | 212 | 1.66e-11 | 68.9 |
MS.gene75111.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 67 | 328 | 4 | 254 | 1.07e-14 | 79.0 |
MS.gene75111.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 458 | 612 | 57 | 212 | 1.66e-11 | 68.9 |
MS.gene75111.t1 | AT5G23430 | 25.830 | 271 | 172 | 9 | 67 | 328 | 4 | 254 | 1.11e-14 | 79.0 |
MS.gene75111.t1 | AT5G23430 | 24.841 | 157 | 115 | 3 | 458 | 612 | 57 | 212 | 1.66e-11 | 68.9 |
MS.gene75111.t1 | AT2G26490 | 23.920 | 301 | 187 | 12 | 45 | 311 | 99 | 391 | 5.27e-11 | 66.6 |
MS.gene75111.t1 | AT4G34380 | 23.129 | 294 | 190 | 8 | 45 | 306 | 128 | 417 | 7.47e-11 | 66.2 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCAGTTCCATTGCTTTC+TGG | -0.057605 | 6.3:+84393401 | MS.gene75111:CDS |
TAGAAACTCAAAATTATTTC+TGG | 0.114239 | 6.3:-84394072 | None:intergenic |
GAACTTGTCAAGCATGAATT+TGG | 0.170150 | 6.3:-84394366 | None:intergenic |
TGGATGGAAGTCTTAGAATT+TGG | 0.184320 | 6.3:+84392403 | MS.gene75111:CDS |
GGACAGCCCCTTCTGGCTTC+TGG | 0.209939 | 6.3:+84387933 | MS.gene75111:CDS |
CTTCAGTTCCATTGCTTTCT+GGG | 0.219128 | 6.3:+84393402 | MS.gene75111:CDS |
TCCTCTAATGATACCTTTCC+AGG | 0.223878 | 6.3:-84393440 | None:intergenic |
AGAACAACCAACATCCAATT+TGG | 0.240866 | 6.3:-84392023 | None:intergenic |
GCAAGAGAAGTAATCTTCTT+AGG | 0.274440 | 6.3:-84385652 | None:intergenic |
TATTCTCAGTCTTGATGTTC+AGG | 0.286517 | 6.3:+84386748 | MS.gene75111:CDS |
TTGCTAATATATCCATGTTT+GGG | 0.291782 | 6.3:-84392494 | None:intergenic |
AAGCTTTGCCACTGGCTCTT+TGG | 0.298514 | 6.3:-84393157 | None:intergenic |
AGCATGTAACAGGTTCTTAT+TGG | 0.301064 | 6.3:+84387250 | MS.gene75111:intron |
CTGGCTTCTGGAGGTTCATC+TGG | 0.306643 | 6.3:+84387945 | MS.gene75111:CDS |
TCCAGATACTTACCTTAATA+AGG | 0.315613 | 6.3:+84386871 | MS.gene75111:CDS |
ACCACCAGCTGTCCCTAAAA+TGG | 0.318292 | 6.3:-84391685 | None:intergenic |
CATCTTCTTGTGGGCATTCA+AGG | 0.319568 | 6.3:+84386775 | MS.gene75111:CDS |
GAGGAAGTCCTAACCTTTAC+AGG | 0.323885 | 6.3:-84391386 | None:intergenic |
GGGAAAGCCGGAGCATCTTT+AGG | 0.327151 | 6.3:-84393088 | None:intergenic |
ATCTCCAGCAACTCTGGATA+TGG | 0.328896 | 6.3:+84393935 | MS.gene75111:CDS |
ATGGCTTCTTTCGTCCAGTA+TGG | 0.331971 | 6.3:+84392383 | MS.gene75111:CDS |
GTTGCTAATATATCCATGTT+TGG | 0.333368 | 6.3:-84392495 | None:intergenic |
GGATGGAAGTCTTAGAATTT+GGG | 0.333460 | 6.3:+84392404 | MS.gene75111:CDS |
TTTAGATGGACAGCCCCTTC+TGG | 0.340805 | 6.3:+84387926 | MS.gene75111:intron |
GCGGAGTCTTAAATCCAAAT+TGG | 0.344934 | 6.3:+84392009 | MS.gene75111:CDS |
GATACTCAAGTTGAGCATTC+TGG | 0.353256 | 6.3:+84393043 | MS.gene75111:CDS |
AAGATGTGCTCACCTTATTA+AGG | 0.360143 | 6.3:-84386883 | None:intergenic |
ATTGTTTACCATCGTTATAA+TGG | 0.363546 | 6.3:+84392055 | MS.gene75111:CDS |
ACCTTATTAAGGTAAGTATC+TGG | 0.369983 | 6.3:-84386872 | None:intergenic |
AATGAAAGTGTAACTAAATC+AGG | 0.370674 | 6.3:-84393130 | None:intergenic |
AGACTTGTTCGTAAATTTGA+AGG | 0.377882 | 6.3:+84392315 | MS.gene75111:CDS |
CATCCGTTACGATGAAGAAT+TGG | 0.379794 | 6.3:+84387429 | MS.gene75111:CDS |
CCCTGTGAATTCCAGATTGA+AGG | 0.385512 | 6.3:-84391725 | None:intergenic |
GCATGTAACAGGTTCTTATT+GGG | 0.387088 | 6.3:+84387251 | MS.gene75111:intron |
CTACCCATGTTGATCAAAAC+GGG | 0.389964 | 6.3:+84392517 | MS.gene75111:CDS |
GACAGTGATAATGCCGTTAT+AGG | 0.394127 | 6.3:-84392471 | None:intergenic |
GTCCTAACCTTTACAGGCGT+TGG | 0.395238 | 6.3:-84391380 | None:intergenic |
CTTGCATATGAATCGACATT+TGG | 0.398727 | 6.3:-84392971 | None:intergenic |
TGTTATTAGCATATGGAATC+TGG | 0.399911 | 6.3:+84387968 | MS.gene75111:CDS |
GATCAATTTAGACATTATAA+AGG | 0.409214 | 6.3:+84393180 | MS.gene75111:CDS |
ACACATTCTTTCTGCTGGCC+AGG | 0.414729 | 6.3:+84389323 | MS.gene75111:CDS |
AGCAAGGCACTATGCAGCTT+TGG | 0.417073 | 6.3:+84387278 | MS.gene75111:CDS |
CATCTGGTGTTATTAGCATA+TGG | 0.418142 | 6.3:+84387961 | MS.gene75111:CDS |
GTGAAATCGTTATTGTTGTT+TGG | 0.420707 | 6.3:+84386719 | MS.gene75111:CDS |
AGTTTCTACAAGCTGTCATC+AGG | 0.421858 | 6.3:+84394087 | MS.gene75111:CDS |
ATTGAAGAAGATAGAGAAAA+CGG | 0.421971 | 6.3:-84393523 | None:intergenic |
GAAAAGTTCAACCTTCAATC+TGG | 0.422796 | 6.3:+84391714 | MS.gene75111:CDS |
AACTTGTCAAGCATGAATTT+GGG | 0.426258 | 6.3:-84394365 | None:intergenic |
GGTATTTGCTTATCTTGAGT+TGG | 0.432192 | 6.3:-84393109 | None:intergenic |
GTATTTGCTTATCTTGAGTT+GGG | 0.433079 | 6.3:-84393108 | None:intergenic |
AAGATTATCTCCAGCAACTC+TGG | 0.435413 | 6.3:+84393929 | MS.gene75111:CDS |
GCTCTAGATGTTGTTGCTGT+TGG | 0.443800 | 6.3:+84387376 | MS.gene75111:CDS |
CTGAAATTAGAGAGCGTGAT+TGG | 0.445206 | 6.3:+84391255 | MS.gene75111:CDS |
GGGATATCAAGGAGATATAA+AGG | 0.447454 | 6.3:+84391845 | MS.gene75111:CDS |
TCTAAGACTTCCATCCATAC+TGG | 0.450343 | 6.3:-84392397 | None:intergenic |
GCCTGGAAAGGTATCATTAG+AGG | 0.455965 | 6.3:+84393439 | MS.gene75111:CDS |
TCTTCATCTGGCCAGATACA+TGG | 0.457513 | 6.3:+84394211 | MS.gene75111:intron |
TTGAGTCGTTGAACGGAGAA+AGG | 0.463350 | 6.3:-84385538 | None:intergenic |
GAAGTCTCCACACATATGCT+TGG | 0.464155 | 6.3:-84391310 | None:intergenic |
ACTACCCATGTTGATCAAAA+CGG | 0.464418 | 6.3:+84392516 | MS.gene75111:CDS |
GGGGAAATATTGTTTGAGCC+TGG | 0.465198 | 6.3:+84393422 | MS.gene75111:CDS |
GTTAATAGGATCAACAAAGT+AGG | 0.466327 | 6.3:+84389697 | MS.gene75111:intron |
GACTGCTAGAGAACATTGCC+TGG | 0.469186 | 6.3:-84392949 | None:intergenic |
ATAATGAATTTCAGGTCTCC+TGG | 0.469274 | 6.3:+84392242 | MS.gene75111:intron |
AGATACATGGCGAGACAATT+CGG | 0.470210 | 6.3:+84394224 | MS.gene75111:intron |
CTCTCAACCTAAAGATGCTC+CGG | 0.471862 | 6.3:+84393081 | MS.gene75111:CDS |
AATTAGATTGTTTGATGTTG+TGG | 0.472460 | 6.3:+84392287 | MS.gene75111:CDS |
TCTAACACAATGTGGCCAAC+AGG | 0.474624 | 6.3:-84386818 | None:intergenic |
ATACCATGCACTGAATATCT+AGG | 0.477847 | 6.3:-84394282 | None:intergenic |
AAGTCTCCACACATATGCTT+GGG | 0.479668 | 6.3:-84391309 | None:intergenic |
AATATTCGAGTTTAAGGGAT+GGG | 0.480520 | 6.3:+84387321 | MS.gene75111:CDS |
AATTCCATATCCAGAGTTGC+TGG | 0.481954 | 6.3:-84393939 | None:intergenic |
TATGGAATCTGGAAAAGAAA+AGG | 0.484303 | 6.3:+84387979 | MS.gene75111:CDS |
CTTAAATCCAAATTGGATGT+TGG | 0.485333 | 6.3:+84392016 | MS.gene75111:CDS |
ATGATAAGTGTGGGATATCA+AGG | 0.485504 | 6.3:+84391834 | MS.gene75111:CDS |
TCAGGGAAACATCTTCTTGT+GGG | 0.486721 | 6.3:+84386766 | MS.gene75111:CDS |
TCTCCTGTGGAAGAGATAGA+TGG | 0.486932 | 6.3:-84393022 | None:intergenic |
TTCAGTTCCATTGCTTTCTG+GGG | 0.487757 | 6.3:+84393403 | MS.gene75111:CDS |
ACCTTCAATCTGGAATTCAC+AGG | 0.487997 | 6.3:+84391724 | MS.gene75111:CDS |
GGAAGACACATTCTTTCTGC+TGG | 0.491112 | 6.3:+84389318 | MS.gene75111:CDS |
CATCAATGATCTGAAGCATT+CGG | 0.491463 | 6.3:-84393962 | None:intergenic |
TGAAAATCCAACGCCTGTAA+AGG | 0.491515 | 6.3:+84391373 | MS.gene75111:CDS |
GGAACTGAAGGCAGGAAGAA+TGG | 0.492639 | 6.3:-84393389 | None:intergenic |
AAAGGCGAAAAGCTCGATCC+TGG | 0.497264 | 6.3:-84389341 | None:intergenic |
GTAATCTTCTTAGGAAGTTG+AGG | 0.497363 | 6.3:-84385643 | None:intergenic |
ATGCATCCGATGGCTCTGTA+TGG | 0.497902 | 6.3:-84385502 | None:intergenic |
TTGAAGAAGATAGAGAAAAC+GGG | 0.498354 | 6.3:-84393522 | None:intergenic |
TTATCTTGAGTTGGGAAAGC+CGG | 0.498897 | 6.3:-84393100 | None:intergenic |
AATCATCTGCTACGGTAGCC+AGG | 0.502240 | 6.3:-84392260 | None:intergenic |
TAATGTGGTTACCTGCCATA+TGG | 0.502599 | 6.3:+84391280 | MS.gene75111:CDS |
GATTTGTGCTTCAGTGAGGA+TGG | 0.509567 | 6.3:+84392357 | MS.gene75111:CDS |
GATGAGACAATACAGGAGAT+AGG | 0.509616 | 6.3:-84387349 | None:intergenic |
CAGCCCCTTCTGGCTTCTGG+AGG | 0.511831 | 6.3:+84387936 | MS.gene75111:CDS |
ATTCTCAGTCTTGATGTTCA+GGG | 0.516449 | 6.3:+84386749 | MS.gene75111:CDS |
GATTTCACTTTCGCTTCTTG+TGG | 0.517284 | 6.3:+84385685 | MS.gene75111:CDS |
ACAAGTTGATGTGCCTATAA+CGG | 0.519849 | 6.3:+84392458 | MS.gene75111:CDS |
TAATCCATGAGTTGTTCAAT+CGG | 0.520785 | 6.3:-84394029 | None:intergenic |
AGCAGGGGATGAGACAATAC+AGG | 0.520849 | 6.3:-84387356 | None:intergenic |
TGTTCAATCGGTACCAACTC+AGG | 0.522291 | 6.3:-84394017 | None:intergenic |
AAGAACAATCTTGTTCCTGT+TGG | 0.524603 | 6.3:+84386803 | MS.gene75111:CDS |
ACTGCTTTATCTTTCAGCAC+TGG | 0.525692 | 6.3:+84387484 | MS.gene75111:CDS |
GCTTCAGTGAGGATGGGAAA+TGG | 0.527395 | 6.3:+84392364 | MS.gene75111:CDS |
TTAATAGGATCAACAAAGTA+GGG | 0.528258 | 6.3:+84389698 | MS.gene75111:intron |
CTTCTTTCGTCCAGTATGGA+TGG | 0.530251 | 6.3:+84392387 | MS.gene75111:CDS |
AGTATCTGGATGCATAATAC+AGG | 0.530387 | 6.3:-84386858 | None:intergenic |
AAAATTGCCACAAGCACTGA+TGG | 0.530939 | 6.3:-84391661 | None:intergenic |
GTTCTTATTGGGAGTGAGCA+AGG | 0.535121 | 6.3:+84387262 | MS.gene75111:CDS |
TTCATATGCAAGTGGAAAAG+AGG | 0.537479 | 6.3:+84392982 | MS.gene75111:CDS |
TTCAGTGTTGAGTCGTTGAA+CGG | 0.537582 | 6.3:-84385545 | None:intergenic |
ATGCTTGGGAAGTATCCATA+TGG | 0.538742 | 6.3:-84391295 | None:intergenic |
TAATTCTTACTTTATGCAGA+GGG | 0.539368 | 6.3:-84388739 | None:intergenic |
AGATAGAGAAAACGGGATGA+TGG | 0.541282 | 6.3:-84393515 | None:intergenic |
CAACCTGTACAACAGAGAAA+AGG | 0.541536 | 6.3:-84389359 | None:intergenic |
TTCAGGGAAACATCTTCTTG+TGG | 0.544489 | 6.3:+84386765 | MS.gene75111:CDS |
GCTGATGAGCTCATTAGCAC+TGG | 0.544843 | 6.3:-84388068 | None:intergenic |
TTAGGTTGAGAGGCATTCAC+CGG | 0.545733 | 6.3:-84393070 | None:intergenic |
CCAGAAAGCAATGGAACTGA+AGG | 0.545837 | 6.3:-84393401 | None:intergenic |
TGTTGTTGCTGTTGGCTGTA+CGG | 0.547922 | 6.3:+84387384 | MS.gene75111:CDS |
TTGCCATCTATCTCTTCCAC+AGG | 0.548149 | 6.3:+84393019 | MS.gene75111:CDS |
AGTTGAGCATTCTGGTGAGC+CGG | 0.552605 | 6.3:+84393051 | MS.gene75111:CDS |
CGGAGCATCTTTAGGTTGAG+AGG | 0.554260 | 6.3:-84393080 | None:intergenic |
AAAGGTATCATTAGAGGAGA+AGG | 0.555301 | 6.3:+84393445 | MS.gene75111:CDS |
TAGATATTCAGTGCATGGTA+TGG | 0.556229 | 6.3:+84394284 | MS.gene75111:CDS |
ATAATTCTTACTTTATGCAG+AGG | 0.557396 | 6.3:-84388740 | None:intergenic |
GTATCATTAGAGGAGAAGGA+TGG | 0.557429 | 6.3:+84393449 | MS.gene75111:CDS |
AATTGATCAAGCTTTGCCAC+TGG | 0.558288 | 6.3:-84393165 | None:intergenic |
ACAGCAACAACATCTAGAGC+AGG | 0.559119 | 6.3:-84387373 | None:intergenic |
TTCAGTGCATGGTATGGCAG+AGG | 0.561370 | 6.3:+84394290 | MS.gene75111:CDS |
ATCTGGATGCATAATACAGG+TGG | 0.563602 | 6.3:-84386855 | None:intergenic |
TTCGAACCATACAGAGCCAT+CGG | 0.567397 | 6.3:+84385496 | MS.gene75111:CDS |
CATTGCTTCCAAAGAGCCAG+TGG | 0.567511 | 6.3:+84393149 | MS.gene75111:CDS |
TGAACCTCCAGAAGCCAGAA+GGG | 0.567663 | 6.3:-84387940 | None:intergenic |
CTTCGAAAGCGCAAAAGACG+AGG | 0.569001 | 6.3:-84388699 | None:intergenic |
TTGGAGCAGTCACACTGCTA+AGG | 0.570558 | 6.3:+84386697 | MS.gene75111:CDS |
AATATTGTTTGAGCCTGGAA+AGG | 0.570569 | 6.3:+84393427 | MS.gene75111:CDS |
AATTGTTAAATCATCTGCTA+CGG | 0.570851 | 6.3:-84392268 | None:intergenic |
CCACAATCAAACGCAATCAC+AGG | 0.571809 | 6.3:-84390681 | None:intergenic |
GGTACCGATTGAACAACTCA+TGG | 0.572178 | 6.3:+84394025 | MS.gene75111:CDS |
CCTTCAATCTGGAATTCACA+GGG | 0.575398 | 6.3:+84391725 | MS.gene75111:CDS |
AAACTCAAAATTATTTCTGG+AGG | 0.575586 | 6.3:-84394069 | None:intergenic |
ATTATCACTGTCCCCAAACA+TGG | 0.576857 | 6.3:+84392482 | MS.gene75111:CDS |
ACCGGTGGCGATGCATCCGA+TGG | 0.581161 | 6.3:-84385512 | None:intergenic |
AACACTCTCATGATAAGTGT+GGG | 0.581208 | 6.3:+84391825 | MS.gene75111:CDS |
ATTTGTGCTTCAGTGAGGAT+GGG | 0.584407 | 6.3:+84392358 | MS.gene75111:CDS |
GCCATCGGATGCATCGCCAC+CGG | 0.585120 | 6.3:+84385511 | MS.gene75111:CDS |
TTGGGAAGTATCCATATGGC+AGG | 0.587236 | 6.3:-84391291 | None:intergenic |
TGGATGCATAATACAGGTGG+GGG | 0.589630 | 6.3:-84386852 | None:intergenic |
ACTCCTAGATATTCAGTGCA+TGG | 0.590916 | 6.3:+84394279 | MS.gene75111:CDS |
AAAGCAATGGAACTGAAGGC+AGG | 0.594870 | 6.3:-84393397 | None:intergenic |
ATGAACCTCCAGAAGCCAGA+AGG | 0.595407 | 6.3:-84387941 | None:intergenic |
TCTTACTTTATGCAGAGGGG+AGG | 0.597348 | 6.3:-84388735 | None:intergenic |
TGAGTCGTTGAACGGAGAAA+GGG | 0.598101 | 6.3:-84385537 | None:intergenic |
GTTGCTGTTGGCTGTACGGA+CGG | 0.598579 | 6.3:+84387388 | MS.gene75111:CDS |
TCTGGATGCATAATACAGGT+GGG | 0.600284 | 6.3:-84386854 | None:intergenic |
AATATTTCCCCAGAAAGCAA+TGG | 0.601261 | 6.3:-84393410 | None:intergenic |
TGCTAATATATCCATGTTTG+GGG | 0.601394 | 6.3:-84392493 | None:intergenic |
TAACCAATTCTTCATCGTAA+CGG | 0.604068 | 6.3:-84387432 | None:intergenic |
AGATGAGAAGAGACCTGAGT+TGG | 0.604190 | 6.3:+84394004 | MS.gene75111:CDS |
CCTGTGATTGCGTTTGATTG+TGG | 0.607870 | 6.3:+84390681 | MS.gene75111:CDS |
AAACACTCTCATGATAAGTG+TGG | 0.609015 | 6.3:+84391824 | MS.gene75111:CDS |
GTTGTAAGAGAGGCTCATGA+TGG | 0.612395 | 6.3:+84388011 | MS.gene75111:CDS |
CAGCAACAACATCTAGAGCA+GGG | 0.614150 | 6.3:-84387372 | None:intergenic |
AAATATTCGAGTTTAAGGGA+TGG | 0.616538 | 6.3:+84387320 | MS.gene75111:CDS |
TCAGATTACCATTATAACGA+TGG | 0.618308 | 6.3:-84392063 | None:intergenic |
AATGTCGATTCATATGCAAG+TGG | 0.623688 | 6.3:+84392974 | MS.gene75111:CDS |
ACTTTCGTGACTGTTTCCGT+TGG | 0.624843 | 6.3:+84385568 | MS.gene75111:CDS |
AGCAGTGACAGAACCACGCG+TGG | 0.627907 | 6.3:-84387467 | None:intergenic |
GCTCCACTCAGTTGTAAGAG+AGG | 0.629434 | 6.3:+84388001 | MS.gene75111:CDS |
CTGGATGCATAATACAGGTG+GGG | 0.636974 | 6.3:-84386853 | None:intergenic |
CTCAACTTGAGTATCTCCTG+TGG | 0.637559 | 6.3:-84393035 | None:intergenic |
TCAGTGCATGGTATGGCAGA+GGG | 0.645008 | 6.3:+84394291 | MS.gene75111:CDS |
AGAGCGTGATTGGTGTAATG+TGG | 0.645762 | 6.3:+84391265 | MS.gene75111:CDS |
TTGTGCTCATGATAGTGAAG+TGG | 0.649129 | 6.3:+84391779 | MS.gene75111:CDS |
AGCGAAAGTGAAATCACGAT+AGG | 0.652709 | 6.3:-84385677 | None:intergenic |
GAGCCTCTCTTACAACTGAG+TGG | 0.655771 | 6.3:-84388004 | None:intergenic |
AACAGATTTGTGCTTCAGTG+AGG | 0.655929 | 6.3:+84392353 | MS.gene75111:CDS |
AGCAACAACATCTAGAGCAG+GGG | 0.656111 | 6.3:-84387371 | None:intergenic |
AATTCTGATCTAACACAATG+TGG | 0.658285 | 6.3:-84386826 | None:intergenic |
ACTTGTGCCATCAGTGCTTG+TGG | 0.658675 | 6.3:+84391654 | MS.gene75111:CDS |
ATCAAAACGGGGTATACCTG+TGG | 0.660227 | 6.3:+84392529 | MS.gene75111:CDS |
TTCGAAAGCGCAAAAGACGA+GGG | 0.661264 | 6.3:-84388698 | None:intergenic |
ATACTTCCCAAGCATATGTG+TGG | 0.662574 | 6.3:+84391303 | MS.gene75111:CDS |
GCTCATGATAGTGAAGTGGT+TGG | 0.662823 | 6.3:+84391783 | MS.gene75111:CDS |
AATTCTTACTTTATGCAGAG+GGG | 0.668934 | 6.3:-84388738 | None:intergenic |
GAACCTCCAGAAGCCAGAAG+GGG | 0.671328 | 6.3:-84387939 | None:intergenic |
GTTTCAAAGTACGAGGTGTG+TGG | 0.671775 | 6.3:+84394324 | MS.gene75111:CDS |
ATAAGTTGTTTCAAAGTACG+AGG | 0.697039 | 6.3:+84394317 | MS.gene75111:CDS |
TTGAACGGAGAAAGGGACAC+CGG | 0.699488 | 6.3:-84385530 | None:intergenic |
AACGGAGAAAGGGACACCGG+TGG | 0.700224 | 6.3:-84385527 | None:intergenic |
AGGTCTGGGATTTCAAAGAG+CGG | 0.706924 | 6.3:+84391990 | MS.gene75111:intron |
TACCCATGTTGATCAAAACG+GGG | 0.741588 | 6.3:+84392518 | MS.gene75111:CDS |
CTTCAATCTGGAATTCACAG+GGG | 0.778696 | 6.3:+84391726 | MS.gene75111:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 84385487 | 84394381 | 84385487 | ID=MS.gene75111 |
chr6.3 | mRNA | 84385487 | 84394381 | 84385487 | ID=MS.gene75111.t1;Parent=MS.gene75111 |
chr6.3 | exon | 84385487 | 84385589 | 84385487 | ID=MS.gene75111.t1.exon1;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84385487 | 84385589 | 84385487 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84385632 | 84385741 | 84385632 | ID=MS.gene75111.t1.exon2;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84385632 | 84385741 | 84385632 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84386689 | 84386892 | 84386689 | ID=MS.gene75111.t1.exon3;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84386689 | 84386892 | 84386689 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84387262 | 84387505 | 84387262 | ID=MS.gene75111.t1.exon4;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84387262 | 84387505 | 84387262 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84387931 | 84388106 | 84387931 | ID=MS.gene75111.t1.exon5;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84387931 | 84388106 | 84387931 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84388669 | 84388751 | 84388669 | ID=MS.gene75111.t1.exon6;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84388669 | 84388751 | 84388669 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84389305 | 84389377 | 84389305 | ID=MS.gene75111.t1.exon7;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84389305 | 84389377 | 84389305 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84389705 | 84389770 | 84389705 | ID=MS.gene75111.t1.exon8;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84389705 | 84389770 | 84389705 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84390660 | 84390702 | 84390660 | ID=MS.gene75111.t1.exon9;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84390660 | 84390702 | 84390660 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84391255 | 84391394 | 84391255 | ID=MS.gene75111.t1.exon10;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84391255 | 84391394 | 84391255 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84391654 | 84391866 | 84391654 | ID=MS.gene75111.t1.exon11;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84391654 | 84391866 | 84391654 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84391992 | 84392076 | 84391992 | ID=MS.gene75111.t1.exon12;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84391992 | 84392076 | 84391992 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84392256 | 84392550 | 84392256 | ID=MS.gene75111.t1.exon13;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84392256 | 84392550 | 84392256 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84392943 | 84393201 | 84392943 | ID=MS.gene75111.t1.exon14;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84392943 | 84393201 | 84392943 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84393344 | 84393566 | 84393344 | ID=MS.gene75111.t1.exon15;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84393344 | 84393566 | 84393344 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84393904 | 84394121 | 84393904 | ID=MS.gene75111.t1.exon16;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84393904 | 84394121 | 84393904 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
chr6.3 | exon | 84394226 | 84394381 | 84394226 | ID=MS.gene75111.t1.exon17;Parent=MS.gene75111.t1 |
chr6.3 | CDS | 84394226 | 84394381 | 84394226 | ID=cds.MS.gene75111.t1;Parent=MS.gene75111.t1 |
Gene Sequence |
Protein sequence |