AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062696

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062696.t1 MTR_6g039440 68.841 552 172 0 4 555 1 552 0.0 817
MS.gene062696.t1 MTR_6g008560 68.165 556 176 1 1 555 1 556 0.0 814
MS.gene062696.t1 MTR_5g062230 69.910 555 164 1 1 555 1 552 0.0 810
MS.gene062696.t1 MTR_4g048460 68.354 553 175 0 3 555 8 560 0.0 793
MS.gene062696.t1 MTR_3g464190 67.027 555 182 1 1 554 1 555 0.0 789
MS.gene062696.t1 MTR_5g073200 66.360 544 182 1 12 554 4 547 0.0 749
MS.gene062696.t1 MTR_5g073260 63.914 557 193 3 1 555 1 551 0.0 744
MS.gene062696.t1 MTR_5g094620 63.243 555 185 2 1 555 1 536 0.0 742
MS.gene062696.t1 MTR_4g081460 57.374 556 234 2 2 555 7 561 0.0 665
MS.gene062696.t1 MTR_4g048460 67.615 457 148 0 3 459 8 464 0.0 639
MS.gene062696.t1 MTR_6g008560 68.250 400 127 0 156 555 1 400 0.0 593
MS.gene062696.t1 MTR_2g082010 44.286 560 304 7 1 554 9 566 4.37e-176 509
MS.gene062696.t1 MTR_2g081980 44.872 546 293 7 15 554 12 555 2.74e-173 502
MS.gene062696.t1 MTR_8g007515 45.803 548 289 6 13 554 9 554 1.12e-170 495
MS.gene062696.t1 MTR_2g082060 42.883 562 300 9 1 554 3 551 1.63e-161 472
MS.gene062696.t1 MTR_4g019550 41.489 564 305 9 2 554 7 556 2.31e-145 431
MS.gene062696.t1 MTR_2g082050 40.039 507 245 8 53 556 9 459 1.24e-126 379
MS.gene062696.t1 MTR_4g045810 34.799 546 345 4 13 554 41 579 2.04e-114 352
MS.gene062696.t1 MTR_2g064425 35.675 541 338 6 17 555 53 585 1.29e-107 334
MS.gene062696.t1 MTR_2g089120 35.922 515 307 9 49 556 67 565 1.99e-107 333
MS.gene062696.t1 MTR_2g089130 34.442 511 317 6 49 555 67 563 6.43e-105 327
MS.gene062696.t1 MTR_8g057020 33.333 549 357 6 9 555 47 588 3.88e-98 310
MS.gene062696.t1 MTR_2g064425 34.011 541 332 7 17 555 53 570 1.97e-97 307
MS.gene062696.t1 MTR_2g065450 32.605 549 357 6 10 555 51 589 8.44e-95 301
MS.gene062696.t1 MTR_7g010710 31.183 558 373 7 1 553 1 552 6.66e-88 282
MS.gene062696.t1 MTR_2g064425 43.251 363 194 7 17 376 53 406 6.38e-87 276
MS.gene062696.t1 MTR_4g092020 31.977 516 336 7 44 554 64 569 2.88e-85 276
MS.gene062696.t1 MTR_4g092010 30.909 550 367 10 5 548 14 556 6.44e-85 275
MS.gene062696.t1 MTR_7g057340 67.251 171 56 0 385 555 1 171 1.88e-83 257
MS.gene062696.t1 MTR_7g057390 66.082 171 55 1 385 555 1 168 2.87e-78 244
MS.gene062696.t1 MTR_5g094530 59.361 219 51 4 166 381 1 184 6.05e-78 244
MS.gene062696.t1 MTR_2g064425 40.771 363 188 8 17 376 53 391 1.36e-76 248
MS.gene062696.t1 MTR_2g010960 29.143 525 345 9 42 547 2 518 1.79e-74 246
MS.gene062696.t1 MTR_6g064980 30.200 500 324 9 54 538 13 502 1.09e-70 236
MS.gene062696.t1 MTR_3g063170 29.485 485 329 8 54 529 13 493 7.00e-68 228
MS.gene062696.t1 MTR_3g465090 29.592 490 332 7 54 534 13 498 1.74e-67 227
MS.gene062696.t1 MTR_3g063120 28.657 499 329 9 68 550 1 488 2.37e-66 224
MS.gene062696.t1 MTR_3g063140 29.637 496 324 9 54 534 13 498 3.03e-66 224
MS.gene062696.t1 MTR_3g052120 29.608 510 336 9 54 550 13 512 7.68e-65 220
MS.gene062696.t1 MTR_7g050990 61.446 166 53 2 199 364 27 181 1.14e-58 210
MS.gene062696.t1 MTR_6g065040 28.889 405 270 7 138 534 2 396 1.30e-54 190
MS.gene062696.t1 MTR_3g015080 45.614 171 55 2 385 555 1 133 2.22e-43 151
MS.gene062696.t1 MTR_3g063160 31.636 275 172 5 63 328 21 288 5.94e-36 136
MS.gene062696.t1 MTR_2g012870 24.433 573 393 16 10 554 194 754 2.80e-34 138
MS.gene062696.t1 MTR_3g058160 25.813 523 332 17 70 554 65 569 1.13e-33 135
MS.gene062696.t1 MTR_2g064295 24.612 516 347 15 70 554 256 760 1.21e-33 136
MS.gene062696.t1 MTR_3g058160 25.813 523 332 17 70 554 269 773 2.56e-33 135
MS.gene062696.t1 MTR_3g058160 25.813 523 332 17 70 554 256 760 2.59e-33 135
MS.gene062696.t1 MTR_3g058160 25.813 523 332 17 70 554 276 780 2.72e-33 135
MS.gene062696.t1 MTR_2g012900 25.145 517 336 17 10 486 194 699 5.77e-32 131
MS.gene062696.t1 MTR_3g058160 25.184 544 330 18 70 554 276 801 1.18e-30 127
MS.gene062696.t1 MTR_7g094970 28.832 274 165 7 68 313 206 477 7.00e-26 112
MS.gene062696.t1 MTR_7g011663 30.909 275 156 7 68 310 344 616 2.40e-25 111
MS.gene062696.t1 MTR_5g030050 30.189 265 150 8 73 312 3 257 8.35e-24 102
MS.gene062696.t1 MTR_7g011770 30.068 296 176 8 68 334 240 533 4.48e-23 103
MS.gene062696.t1 MTR_5g081730 37.273 110 64 1 153 257 2 111 1.33e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062696.t1 AT5G23960 40.293 546 319 5 13 555 3 544 3.13e-151 445
MS.gene062696.t1 AT5G23960 40.328 548 318 6 13 555 3 546 1.97e-150 443
MS.gene062696.t1 AT1G70080 37.634 558 338 7 5 554 54 609 8.21e-128 387
MS.gene062696.t1 AT3G14490 37.912 546 327 7 17 555 60 600 3.29e-122 372
MS.gene062696.t1 AT3G14520 36.667 540 332 6 22 555 68 603 4.58e-122 372
MS.gene062696.t1 AT1G31950 36.111 540 335 5 22 555 70 605 9.22e-121 369
MS.gene062696.t1 AT1G31950 36.044 541 335 6 22 555 70 606 3.92e-120 367
MS.gene062696.t1 AT3G14540 36.920 539 332 4 22 555 65 600 4.91e-120 367
MS.gene062696.t1 AT5G44630 35.221 565 345 8 1 554 1 555 8.51e-115 352
MS.gene062696.t1 AT1G33750 35.019 534 341 4 24 555 73 602 3.15e-114 352
MS.gene062696.t1 AT3G32030 34.815 540 344 6 22 556 68 604 1.12e-112 348
MS.gene062696.t1 AT4G13300 36.617 538 328 7 25 554 20 552 6.42e-112 344
MS.gene062696.t1 AT3G29410 34.502 542 349 5 17 555 64 602 2.66e-111 344
MS.gene062696.t1 AT4G20210 34.249 546 346 7 17 554 58 598 5.29e-109 338
MS.gene062696.t1 AT4G20200 35.521 518 316 9 48 554 92 602 9.81e-107 332
MS.gene062696.t1 AT4G13280 36.194 536 329 7 27 554 22 552 2.19e-106 330
MS.gene062696.t1 AT3G29190 34.393 535 325 9 38 555 75 600 2.99e-106 331
MS.gene062696.t1 AT4G15870 34.657 554 336 10 9 554 61 596 4.66e-106 330
MS.gene062696.t1 AT3G29410 34.800 500 320 4 59 555 1 497 2.69e-105 325
MS.gene062696.t1 AT3G14540 37.444 446 272 3 22 463 65 507 1.78e-100 313
MS.gene062696.t1 AT1G31950 36.105 457 281 6 22 471 70 522 2.68e-100 313
MS.gene062696.t1 AT4G20230 32.679 560 352 10 6 552 66 613 3.13e-100 316
MS.gene062696.t1 AT4G20230 32.679 560 352 10 6 552 54 601 4.02e-100 315
MS.gene062696.t1 AT4G16730 31.793 541 352 7 28 555 2 538 1.31e-98 310
MS.gene062696.t1 AT3G29110 34.312 545 347 9 17 554 55 595 7.92e-97 306
MS.gene062696.t1 AT2G23230 33.516 546 348 9 16 551 55 595 8.18e-97 307
MS.gene062696.t1 AT4G13280 35.075 536 305 9 27 554 22 522 5.15e-95 300
MS.gene062696.t1 AT4G16730 32.121 495 321 5 73 555 1 492 1.38e-94 298
MS.gene062696.t1 AT2G23230 33.333 546 344 10 16 551 55 590 3.49e-94 300
MS.gene062696.t1 AT1G66020 32.169 544 360 6 17 554 56 596 3.96e-93 297
MS.gene062696.t1 AT1G48800 31.319 546 359 9 17 552 63 602 3.10e-91 292
MS.gene062696.t1 AT2G24210 31.362 558 364 9 10 555 39 589 7.20e-91 291
MS.gene062696.t1 AT4G16740 31.712 555 356 10 12 555 21 563 1.24e-90 290
MS.gene062696.t1 AT3G25830 31.541 558 356 12 15 555 45 593 8.81e-88 283
MS.gene062696.t1 AT3G25820 31.541 558 356 12 15 555 45 593 8.81e-88 283
MS.gene062696.t1 AT3G25810 31.794 563 351 12 15 555 45 596 9.13e-88 283
MS.gene062696.t1 AT1G61680 31.238 541 348 7 1 534 34 557 5.91e-87 280
MS.gene062696.t1 AT1G61680 30.869 541 343 8 1 534 34 550 1.49e-83 271
MS.gene062696.t1 AT5G48110 37.647 340 207 5 216 554 2 337 1.84e-83 263
MS.gene062696.t1 AT1G48820 30.612 539 324 11 17 549 63 557 6.04e-80 261
MS.gene062696.t1 AT4G16740 35.955 356 210 6 12 357 21 368 3.42e-70 231
MS.gene062696.t1 AT3G25820 32.902 386 240 8 15 389 45 422 7.69e-66 221
MS.gene062696.t1 AT1G66020 33.875 369 235 6 17 379 56 421 9.21e-64 215
MS.gene062696.t1 AT4G16740 35.866 329 193 6 12 330 21 341 3.47e-62 209
MS.gene062696.t1 AT4G16740 35.866 329 193 6 12 330 21 341 3.47e-62 209
MS.gene062696.t1 AT3G25820 34.251 327 196 8 15 330 45 363 1.41e-56 195
MS.gene062696.t1 AT3G25820 34.251 327 196 8 15 330 45 363 1.41e-56 195
MS.gene062696.t1 AT1G61120 24.125 514 346 13 68 554 286 782 5.87e-29 122
MS.gene062696.t1 AT1G79460 23.507 519 348 19 70 554 274 777 5.62e-27 116
MS.gene062696.t1 AT4G02780 30.651 261 151 7 68 300 329 587 4.53e-24 107

Find 93 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6.4:-45317760 MS.gene062696:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6.4:-45318759 MS.gene062696:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6.4:-45318758 MS.gene062696:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6.4:-45316230 MS.gene062696:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6.4:-45317720 MS.gene062696:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6.4:+45317772 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6.4:-45317958 MS.gene062696:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6.4:-45319506 MS.gene062696:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6.4:+45317450 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6.4:-45316236 MS.gene062696:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6.4:-45319543 MS.gene062696:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6.4:-45319542 MS.gene062696:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6.4:-45318839 MS.gene062696:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6.4:+45318048 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6.4:-45317102 MS.gene062696:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.4:-45317537 MS.gene062696:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6.4:-45315880 MS.gene062696:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6.4:+45316284 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6.4:+45316375 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6.4:-45316229 MS.gene062696:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6.4:-45316284 MS.gene062696:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6.4:+45317773 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6.4:+45315780 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6.4:-45317114 MS.gene062696:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.4:+45317794 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6.4:-45318881 MS.gene062696:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6.4:-45315893 MS.gene062696:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6.4:-45315907 MS.gene062696:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6.4:-45315803 MS.gene062696:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6.4:+45317889 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6.4:-45315830 MS.gene062696:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6.4:+45317083 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6.4:-45317069 MS.gene062696:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6.4:-45317727 MS.gene062696:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.4:-45316316 MS.gene062696:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6.4:-45316283 MS.gene062696:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6.4:+45317553 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.4:-45316315 MS.gene062696:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6.4:+45317493 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6.4:-45317972 MS.gene062696:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6.4:-45318880 MS.gene062696:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6.4:+45315636 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6.4:-45318060 MS.gene062696:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6.4:-45317029 MS.gene062696:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6.4:+45317890 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6.4:+45315637 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.496538 6.4:-45318015 MS.gene062696:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6.4:-45316346 MS.gene062696:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6.4:+45315642 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6.4:-45318724 MS.gene062696:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6.4:-45317593 MS.gene062696:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6.4:-45317495 MS.gene062696:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6.4:-45318750 MS.gene062696:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6.4:+45315641 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6.4:+45316421 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6.4:-45316340 MS.gene062696:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6.4:-45319541 MS.gene062696:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6.4:-45317485 MS.gene062696:CDS
GCAAATTGATAAACTAAAAG+AGG 0.546970 6.4:-45318959 MS.gene062696:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6.4:+45317822 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6.4:-45315892 MS.gene062696:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6.4:+45315668 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6.4:+45317879 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6.4:-45318983 MS.gene062696:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6.4:-45317873 MS.gene062696:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6.4:-45318742 MS.gene062696:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6.4:-45318790 MS.gene062696:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6.4:-45316321 MS.gene062696:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6.4:-45316419 MS.gene062696:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6.4:+45318764 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.583676 6.4:-45318014 MS.gene062696:CDS
GATGACACGTATGATGCATA+CGG 0.587584 6.4:-45317433 MS.gene062696:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6.4:+45316327 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6.4:+45316328 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6.4:+45319505 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6.4:+45317907 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6.4:-45316354 MS.gene062696:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6.4:+45317056 None:intergenic
GACAACTACACACATTCTGA+AGG 0.603730 6.4:-45315702 MS.gene062696:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6.4:-45319539 MS.gene062696:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6.4:-45317769 MS.gene062696:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6.4:-45318050 MS.gene062696:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6.4:-45317599 MS.gene062696:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6.4:-45319540 MS.gene062696:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6.4:+45315739 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6.4:-45315814 MS.gene062696:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6.4:+45317971 None:intergenic
AATTGATAAACTAAAAGAGG+AGG 0.642973 6.4:-45318956 MS.gene062696:CDS
ATAGTTAACATTCAACCACC+TGG 0.654774 6.4:+45316401 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6.4:-45316208 MS.gene062696:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6.4:-45316424 MS.gene062696:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6.4:-45316416 MS.gene062696:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6.4:-45316385 MS.gene062696:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6.4:45316140-45316159 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6.4:45317588-45317607 None:intergenic 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6.4:45317587-45317606 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6.4:45318118-45318137 MS.gene062696:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6.4:45318061-45318080 MS.gene062696:CDS 10.0%
!! AATATAATAAGATGACATAA+TGG - chr6.4:45319216-45319235 MS.gene062696:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6.4:45318781-45318800 None:intergenic 15.0%
!! ATTATATTTGTGATATCATT+AGG - chr6.4:45316978-45316997 MS.gene062696:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6.4:45318740-45318759 MS.gene062696:CDS 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6.4:45319205-45319224 None:intergenic 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6.4:45316702-45316721 MS.gene062696:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6.4:45317997-45318016 MS.gene062696:CDS 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6.4:45316732-45316751 MS.gene062696:intron 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6.4:45316701-45316720 MS.gene062696:intron 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6.4:45317642-45317661 MS.gene062696:intron 15.0%
!!! TGATTGTTTTTACATAAAAT+AGG - chr6.4:45316866-45316885 MS.gene062696:intron 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6.4:45318370-45318389 MS.gene062696:intron 15.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6.4:45317062-45317081 None:intergenic 20.0%
!! ATAAAGACCAAAAATATCAT+AGG + chr6.4:45317638-45317657 None:intergenic 20.0%
!! GAATCATTAATACAAATAAG+TGG + chr6.4:45316564-45316583 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6.4:45316268-45316287 MS.gene062696:CDS 20.0%
!! GTTCACGTAAAAAAAAAAAA+GGG + chr6.4:45315784-45315803 None:intergenic 20.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6.4:45315841-45315860 MS.gene062696:CDS 20.0%
!! TCTAAAAAATGGTTTAAGTA+TGG - chr6.4:45316743-45316762 MS.gene062696:intron 20.0%
!! TGTTCACGTAAAAAAAAAAA+AGG + chr6.4:45315785-45315804 None:intergenic 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6.4:45318122-45318141 MS.gene062696:intron 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6.4:45316200-45316219 None:intergenic 20.0%
!!! ATAATTGCCTATGATATTTT+TGG - chr6.4:45317628-45317647 MS.gene062696:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6.4:45316744-45316763 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6.4:45319132-45319151 MS.gene062696:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6.4:45316703-45316722 MS.gene062696:intron 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6.4:45317933-45317952 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6.4:45318121-45318140 MS.gene062696:intron 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6.4:45316870-45316889 MS.gene062696:intron 20.0%
!!! TTGTGATTAGAACATTTTTA+GGG - chr6.4:45318446-45318465 MS.gene062696:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6.4:45318700-45318719 None:intergenic 20.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6.4:45319421-45319440 MS.gene062696:intron 25.0%
! AATTGATAAACTAAAAGAGG+AGG - chr6.4:45316295-45316314 MS.gene062696:CDS 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6.4:45317482-45317501 None:intergenic 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6.4:45319359-45319378 MS.gene062696:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6.4:45319448-45319467 MS.gene062696:intron 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6.4:45319089-45319108 MS.gene062696:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6.4:45318968-45318987 MS.gene062696:CDS 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6.4:45317481-45317500 None:intergenic 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6.4:45316770-45316789 None:intergenic 25.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6.4:45315901-45315920 MS.gene062696:CDS 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6.4:45318416-45318435 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAG+AGG - chr6.4:45316292-45316311 MS.gene062696:CDS 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6.4:45316084-45316103 None:intergenic 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6.4:45316168-45316187 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6.4:45317804-45317823 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6.4:45317482-45317501 MS.gene062696:CDS 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6.4:45319371-45319390 MS.gene062696:intron 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6.4:45316155-45316174 MS.gene062696:intron 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6.4:45316412-45316431 MS.gene062696:CDS 25.0%
!! CTTGTGATTAGAACATTTTT+AGG - chr6.4:45318445-45318464 MS.gene062696:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6.4:45317850-45317869 MS.gene062696:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6.4:45317861-45317880 MS.gene062696:CDS 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6.4:45319422-45319441 None:intergenic 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6.4:45316492-45316511 MS.gene062696:intron 25.0%
!!! TGTGATTAGAACATTTTTAG+GGG - chr6.4:45318447-45318466 MS.gene062696:intron 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6.4:45316247-45316266 MS.gene062696:CDS 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6.4:45316493-45316512 MS.gene062696:intron 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6.4:45318259-45318278 None:intergenic 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6.4:45317645-45317664 MS.gene062696:intron 25.0%
AAACAGTTTGAGCAAAAAAG+AGG - chr6.4:45319324-45319343 MS.gene062696:intron 30.0%
AACACATCAACAATATCAAG+TGG - chr6.4:45318897-45318916 MS.gene062696:CDS 30.0%
AACATTGATCATAGATGTTG+AGG - chr6.4:45317236-45317255 MS.gene062696:intron 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6.4:45317024-45317043 None:intergenic 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6.4:45316461-45316480 MS.gene062696:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6.4:45317237-45317256 MS.gene062696:intron 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6.4:45317191-45317210 MS.gene062696:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6.4:45316490-45316509 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6.4:45318748-45318767 MS.gene062696:CDS 30.0%
CATACTTGGAATGTTATATG+AGG - chr6.4:45319358-45319377 MS.gene062696:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6.4:45318970-45318989 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6.4:45318967-45318986 MS.gene062696:CDS 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6.4:45317687-45317706 MS.gene062696:intron 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6.4:45319586-45319605 None:intergenic 30.0%
GATAACATTACACGGATAAT+GGG + chr6.4:45316927-45316946 None:intergenic 30.0%
GCAATGTGTAATATCTATGT+CGG + chr6.4:45316027-45316046 None:intergenic 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6.4:45317688-45317707 MS.gene062696:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6.4:45318866-45318885 MS.gene062696:CDS 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6.4:45316548-45316567 None:intergenic 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6.4:45318171-45318190 None:intergenic 30.0%
TATTTGTGATATCATTAGGC+CGG - chr6.4:45316982-45317001 MS.gene062696:intron 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6.4:45319437-45319456 MS.gene062696:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6.4:45316057-45316076 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6.4:45316612-45316631 MS.gene062696:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6.4:45319474-45319493 None:intergenic 30.0%
! AGGATTTCCAACATTTTTGA+GGG - chr6.4:45315991-45316010 MS.gene062696:intron 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6.4:45316371-45316390 MS.gene062696:CDS 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6.4:45317582-45317601 None:intergenic 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6.4:45317293-45317312 MS.gene062696:intron 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6.4:45315950-45315969 MS.gene062696:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6.4:45315990-45316009 MS.gene062696:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6.4:45317536-45317555 None:intergenic 30.0%
! TTCTAATCACAAGATTTGCT+AGG + chr6.4:45318438-45318457 None:intergenic 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6.4:45319409-45319428 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6.4:45318266-45318285 None:intergenic 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6.4:45316914-45316933 None:intergenic 30.0%
!!! AATCAAGTTGACTTTTTCCA+AGG + chr6.4:45316354-45316373 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6.4:45317715-45317734 MS.gene062696:CDS 30.0%
!!! ATCAAGTTGACTTTTTCCAA+GGG + chr6.4:45316353-45316372 None:intergenic 30.0%
AAAATAGGAAGGATCATCGT+AGG - chr6.4:45316881-45316900 MS.gene062696:intron 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6.4:45319515-45319534 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6.4:45318905-45318924 MS.gene062696:CDS 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6.4:45319486-45319505 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6.4:45317283-45317302 None:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6.4:45318936-45318955 MS.gene062696:CDS 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6.4:45317531-45317550 MS.gene062696:CDS 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6.4:45317012-45317031 MS.gene062696:CDS 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6.4:45318853-45318872 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6.4:45317150-45317169 MS.gene062696:intron 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6.4:45315946-45315965 None:intergenic 35.0%
GGATAACATTACACGGATAA+TGG + chr6.4:45316928-45316947 None:intergenic 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6.4:45318182-45318201 MS.gene062696:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6.4:45317012-45317031 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6.4:45318935-45318954 MS.gene062696:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6.4:45318137-45318156 MS.gene062696:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6.4:45318149-45318168 MS.gene062696:intron 35.0%
TATCCGTGTAATGTTATCCT+CGG - chr6.4:45316929-45316948 MS.gene062696:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6.4:45317491-45317510 MS.gene062696:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6.4:45318198-45318217 None:intergenic 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6.4:45317648-45317667 MS.gene062696:intron 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6.4:45315962-45315981 MS.gene062696:intron 35.0%
TTCAAAAACAGAGAAACCCT+TGG - chr6.4:45316334-45316353 MS.gene062696:CDS 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6.4:45317761-45317780 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6.4:45317766-45317785 MS.gene062696:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6.4:45317530-45317549 None:intergenic 35.0%
! CACAGGGATTTTGTTCAAAA+TGG - chr6.4:45316443-45316462 MS.gene062696:intron 35.0%
! CATTTTGAACAAAATCCCTG+TGG + chr6.4:45316445-45316464 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6.4:45316370-45316389 MS.gene062696:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6.4:45319005-45319024 None:intergenic 35.0%
! TCCTTTTCCCTCAAAAATGT+TGG + chr6.4:45316001-45316020 None:intergenic 35.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6.4:45315749-45315768 None:intergenic 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6.4:45317652-45317671 MS.gene062696:intron 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6.4:45317305-45317324 MS.gene062696:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6.4:45317043-45317062 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6.4:45315912-45315931 None:intergenic 35.0%
!! TCCAACATTTTTGAGGGAAA+AGG - chr6.4:45315997-45316016 MS.gene062696:intron 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6.4:45317299-45317318 MS.gene062696:intron 35.0%
!!! AAGTTTTGGAAGATATCCAC+AGG - chr6.4:45316426-45316445 MS.gene062696:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+GGG - chr6.4:45316427-45316446 MS.gene062696:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6.4:45317724-45317743 MS.gene062696:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6.4:45317714-45317733 MS.gene062696:CDS 35.0%
AACCAATTCAAGGACAAGCA+AGG - chr6.4:45317201-45317220 MS.gene062696:intron 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6.4:45316093-45316112 MS.gene062696:intron 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6.4:45317756-45317775 MS.gene062696:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6.4:45315927-45315946 MS.gene062696:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6.4:45316094-45316113 MS.gene062696:intron 40.0%
GAACCGAGGATAACATTACA+CGG + chr6.4:45316935-45316954 None:intergenic 40.0%
GACAACTACACACATTCTGA+AGG - chr6.4:45319549-45319568 MS.gene062696:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6.4:45318222-45318241 MS.gene062696:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6.4:45317818-45317837 MS.gene062696:CDS 40.0%
GCCTCACATATGATGATTCA+TGG - chr6.4:45317279-45317298 MS.gene062696:intron 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6.4:45316949-45316968 None:intergenic 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6.4:45315928-45315947 MS.gene062696:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6.4:45317460-45317479 None:intergenic 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6.4:45318409-45318428 None:intergenic 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6.4:45316112-45316131 None:intergenic 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6.4:45315983-45316002 None:intergenic 40.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6.4:45315745-45315764 MS.gene062696:CDS 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6.4:45316053-45316072 None:intergenic 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6.4:45318879-45318898 None:intergenic 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6.4:45317206-45317225 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6.4:45318930-45318949 MS.gene062696:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6.4:45319344-45319363 MS.gene062696:intron 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6.4:45316995-45317014 MS.gene062696:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6.4:45317347-45317366 None:intergenic 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6.4:45315971-45315990 MS.gene062696:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6.4:45319509-45319528 MS.gene062696:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6.4:45315709-45315728 MS.gene062696:CDS 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6.4:45316886-45316905 MS.gene062696:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6.4:45318827-45318846 MS.gene062696:CDS 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6.4:45317419-45317438 MS.gene062696:CDS 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6.4:45316527-45316546 MS.gene062696:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6.4:45317364-45317383 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6.4:45317378-45317397 MS.gene062696:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6.4:45317524-45317543 MS.gene062696:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6.4:45319043-45319062 MS.gene062696:intron 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6.4:45318927-45318946 None:intergenic 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6.4:45315932-45315951 MS.gene062696:intron 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6.4:45317365-45317384 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6.4:45319022-45319041 MS.gene062696:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6.4:45317004-45317023 None:intergenic 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6.4:45316994-45317013 MS.gene062696:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6.4:45317658-45317677 MS.gene062696:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6.4:45316501-45316520 MS.gene062696:intron 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6.4:45317375-45317394 None:intergenic 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6.4:45316509-45316528 MS.gene062696:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6.4:45317318-45317337 MS.gene062696:intron 45.0%
!! TTTAAAAAAAGATTATATAT+TGG - chr6.4:45318662-45318681 MS.gene062696:intron 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6.4:45317994-45318013 MS.gene062696:CDS 5.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6.4:45316582-45316601 MS.gene062696:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6.4:45317591-45317610 None:intergenic 5.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6.4:45318926-45318945 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6.4:45318832-45318851 MS.gene062696:CDS 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6.4:45317701-45317720 None:intergenic 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6.4:45318911-45318930 MS.gene062696:CDS 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6.4:45319015-45319034 MS.gene062696:intron 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6.4:45315711-45315730 MS.gene062696:CDS 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6.4:45315708-45315727 MS.gene062696:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6.4:45316041-45316060 MS.gene062696:intron 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6.4:45317412-45317431 MS.gene062696:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6.4:45319021-45319040 MS.gene062696:intron 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6.4:45315710-45315729 MS.gene062696:CDS 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6.4:45317432-45317451 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6.4:45318833-45318852 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6.4:45317414-45317433 None:intergenic 50.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6.4:45315722-45315741 None:intergenic 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6.4:45315721-45315740 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6.4:45318835-45318854 MS.gene062696:CDS 55.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6.4:45315712-45315731 MS.gene062696:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6.4:45315718-45315737 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 45315650 45319623 45315650 ID=MS.gene062696
chr6.4 mRNA 45315650 45319623 45315650 ID=MS.gene062696.t1;Parent=MS.gene062696
chr6.4 exon 45319507 45319623 45319507 ID=MS.gene062696.t1.exon1;Parent=MS.gene062696.t1
chr6.4 CDS 45319507 45319623 45319507 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45318725 45319004 45318725 ID=MS.gene062696.t1.exon2;Parent=MS.gene062696.t1
chr6.4 CDS 45318725 45319004 45318725 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45317708 45318080 45317708 ID=MS.gene062696.t1.exon3;Parent=MS.gene062696.t1
chr6.4 CDS 45317708 45318080 45317708 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45317391 45317609 45317391 ID=MS.gene062696.t1.exon4;Parent=MS.gene062696.t1
chr6.4 CDS 45317391 45317609 45317391 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45316995 45317133 45316995 ID=MS.gene062696.t1.exon5;Parent=MS.gene062696.t1
chr6.4 CDS 45316995 45317133 45316995 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45316209 45316457 45316209 ID=MS.gene062696.t1.exon6;Parent=MS.gene062696.t1
chr6.4 CDS 45316209 45316457 45316209 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
chr6.4 exon 45315650 45315943 45315650 ID=MS.gene062696.t1.exon7;Parent=MS.gene062696.t1
chr6.4 CDS 45315650 45315943 45315650 ID=cds.MS.gene062696.t1;Parent=MS.gene062696.t1
Gene Sequence

>MS.gene062696

ATGTCTGCAGTAGCTAGCTTCAATCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGTACGTATAGAATGCCCTTTTTTTTTTTTACGTGAACAACAATGATTTTTTTTTAAAGATCAACAACAATGATATATGTTATGAAAAGTGATTAAGGAGTTCTAGAAACACTATCTTTCTCATATTTCACTCTAGAATAAAACCAAGAGAAAATAGGTAGAGCTATAGCAAACACTCCAAAGGGTTGGTTATTTGTTAGCAATAGGAATGAAACCTGGTGTTTTAGGATTTCCAACATTTTTGAGGGAAAAGGATTTCCGACATAGATATTACACATTGCACACCAACCACACTTGGATCGTATAATTAATAAACCACTTAATATTACTAACATTGCACACTCCAAAGGGATTCAAGTTACTCACATTTACCTTGTAATATATATATTTTCAAGAATGCCAATAATATAGGATCTTTTGACTAAATGCATCCTTTCAAATAACAATTAAGTGTCATTTATCAATTAATTTTAAAATCATATTCATGTTTTGATTACATACAGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAGAGGAGGTTAGACAAATGCTTGTTTCAAAAACAGAGAAACCCTTGGAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAGGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGGTATTTATATCTCCACTTATTTGTATTAATGATTCATTTTTTATATTTTAATTTGGATCACTATTGAGTAAAACAAACTTGTGTGGTAGTTTTTAGTTTTTTTTTTTTTTTTTTAAATTCTAATCGTCAAATTAATACTTTAATTTACAACATAATTTTTTAACTTTGATCATGGGGAGTATCTAATATAAACCTCTAAAAAATGGTTTAAGTATGGACCTTTACATTTTTAGTAACAACGAGAGTTTTATAATACTAAAAATTAAAGAATAACATAAGTATTTAACTTTTTCTTGCATTAAAAAAAAAAAAAAAGATGATTGTTTTTACATAAAATAGGAAGGATCATCGTAGGATCGGATCCATATTAAACAACCCATTATCCGTGTAATGTTATCCTCGGTTCTTTACATTATTCGCTTTTACATAATTATATTTGTGATATCATTAGGCCGGTTTACCTATAGGGTAGCCATCTTATTAAGGAAGAACCTTTTTCATACTCTAGAACCACACTATACATTATCTTAATTGCTTATTGAATTTTTTAATCTTGTTTTAGTTTCTTATTTACGTATACTTATAAATTAAAACATCTCTAATGATTGTTCAACATTGTCGTGGTTTTCTAATAAAAATATTAGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTCAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTAAGCACTATATCCACACCCTCCTTAATTTAAAATTAAATTGAATTCAAAAACTAACTACTATAATTGCCTATGATATTTTTGGTCTTTATATATAGGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATATAAACTCAATAGAAAAAATAATCAAATAAGCAACCAAAATTTAGAGATAGAAAAACTTGAAATTTATCTGTATTTAGTATTGAAATTAAGTGATGATAAAATTAAATAATAACTTTTAGGTGGTTGCTAATTCTATTTTTTTTAAAAAATAAAATAGACTTTTTTTTTATCATATATTTATACACGGTCTAATTTTGTCAACAAAAGTGTAACAATTAATATTATAATGAAAATGAATTTTAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTAACCACTTCTTAAAAGAAGTAAGAGTTTTATTTTATTGATAAAATTTGTTTCTTTTATTGATTTAATTTATTAAACAAACAAACAAATATTTCATTTTCAATTTTATCTTGTTATCAGAATAAAATTTTAGGATTTAATTTGCATCCACTCTCCGTATAGATACATACATAGATCCTAGCAAATCTTGTGATTAGAACATTTTTAGGGGTTTTGTTGAAATTGACATTATAGAGTATCAACATGATGTTATTTGATTGAAAGTAAATGTTAAACATATTTATACTATCAATGCATAAAAACTAGTTTAAATAACTTTTTATTAGTTGTTTTATGAACTCAATTTGTAGTAATTACTATAAGAAATTTTGTTTTGTCAGAATTAGCTTTTTTGTAATTTTAATTTAAAAAAAGATTATATATTGGCAGTTTAATTAACCGTAGATAATAGTTCAACAAAATTTCGAATACAATTTGACATCATATTTACAAAAAATACATAGGAGTTCAGGTACATAACCTATTAACAATTCTACTATATTTTATAACAATGACAGTTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGGTATTTTTTTTATCTAAATATATAATTTCACACAATATTCTTTGTGGCTAATATATAAGAGATAATTATTGTTCATTTTTGTAAACAAGGTTAACACAACTGTCTAATTACAATTTACAAAGTTGATATTTTTGTAACCGTCTTAAGAGTTAATATAATAAGATGACATAATGGTGAAATGTGACTTTTACACTGTAACTGCATAGTCATTAAACTATTGATATATCTATTGTATCTCATAGTGTATATATTTTTTGATAAACAGTTTGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>MS.gene062696.t1

MSAVASFNHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKEEVRQMLVSKTEKPLEKVNLIDSICRLGVSYYFEDEINQVLEDIHRDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSQTLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT