Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063105.t1 | XP_003604029.1 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 8.90E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063105.t1 | P45434 | 60.2 | 241 | 89 | 3 | 7 | 243 | 19 | 256 | 9.4e-74 | 278.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063105.t1 | B7FIS2 | 97.9 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 6.4e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene063105 | -0.824733 | 6.88E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene063105 | -0.818236 | 2.18E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene063105 | -0.814837 | 1.26E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene063105 | -0.803189 | 3.93E-49 | -1.69E-46 |
| MS.gene053494 | MS.gene063105 | -0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene063105 | -0.80161 | 8.30E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene063105 | -0.807672 | 4.51E-50 | -1.69E-46 |
| MS.gene054012 | MS.gene063105 | -0.81142 | 7.06E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene063105 | -0.81859 | 1.81E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene063105 | -0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene063105 | -0.832953 | 7.04E-56 | -1.69E-46 |
| MS.gene056723 | MS.gene063105 | -0.824463 | 7.96E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene063105 | -0.814057 | 1.87E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene063105 | -0.806144 | 9.49E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene063105 | -0.807859 | 4.12E-50 | -1.69E-46 |
| MS.gene058949 | MS.gene063105 | -0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene063105 | -0.815469 | 9.10E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene063105 | -0.827943 | 1.18E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene063105 | -0.800739 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063105.t1 | MTR_3g117740 | 97.899 | 238 | 5 | 0 | 6 | 243 | 21 | 258 | 3.91e-172 | 474 |
| MS.gene063105.t1 | MTR_4g075340 | 74.459 | 231 | 54 | 3 | 6 | 235 | 21 | 247 | 1.02e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063105.t1 | AT2G16595 | 59.565 | 230 | 86 | 4 | 6 | 234 | 19 | 242 | 1.72e-89 | 265 |
| MS.gene063105.t1 | AT2G21160 | 60.251 | 239 | 88 | 3 | 9 | 243 | 21 | 256 | 2.23e-83 | 249 |
| MS.gene063105.t1 | AT2G21160 | 60.241 | 166 | 59 | 3 | 9 | 170 | 21 | 183 | 3.71e-65 | 201 |
Find 58 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATTTCGCAATATTCTT+AGG | 0.152346 | 3.3:-95651138 | None:intergenic |
| TTTGAATGTTGTTGCAATTA+AGG | 0.192749 | 3.3:+95651415 | MS.gene063105:CDS |
| TTGCTGACAGAAAATATATA+TGG | 0.249255 | 3.3:-95652673 | None:intergenic |
| CTACTTGGGCTATGGATTAA+TGG | 0.301378 | 3.3:+95652972 | MS.gene063105:CDS |
| TTCTGTCAGCAAGTTCTTGC+AGG | 0.320879 | 3.3:+95652684 | MS.gene063105:CDS |
| GTGCAATTCCAAGAGTAAAA+AGG | 0.335460 | 3.3:-95652941 | None:intergenic |
| ACAGCGATGGTGTCAATTCC+TGG | 0.351993 | 3.3:-95651111 | None:intergenic |
| TGTTCAAAACCTTACTGTTC+AGG | 0.353087 | 3.3:+95651472 | MS.gene063105:CDS |
| TACCAAAACACTTTCTATAA+TGG | 0.355170 | 3.3:+95652867 | MS.gene063105:CDS |
| TTCTTATCCTACTTGGGCTA+TGG | 0.361313 | 3.3:+95652964 | MS.gene063105:CDS |
| TGCCATTATAGAAAGTGTTT+TGG | 0.377178 | 3.3:-95652869 | None:intergenic |
| TCAAATACATAACCTGTCTA+AGG | 0.380877 | 3.3:+95652995 | MS.gene063105:CDS |
| AATTGCAACAACATTCAAAC+TGG | 0.382031 | 3.3:-95651411 | None:intergenic |
| CTCCGTGCCATCTTCAGTTC+AGG | 0.401803 | 3.3:+95652642 | MS.gene063105:CDS |
| ATTGCACTTCTTATCCTACT+TGG | 0.405932 | 3.3:+95652957 | MS.gene063105:CDS |
| TACATTTCGCAATATTCTTA+GGG | 0.406141 | 3.3:-95651137 | None:intergenic |
| TGTTCTTCTTGCTAGTTGCT+AGG | 0.413568 | 3.3:+95650977 | MS.gene063105:CDS |
| CCTGGACCATTTGATCTTGT+GGG | 0.422904 | 3.3:+95652813 | MS.gene063105:CDS |
| CTTAGTCCCAACTTCAACCT+TGG | 0.428972 | 3.3:-95653133 | None:intergenic |
| TTTATTTGATGTAGTGGTAA+AGG | 0.436615 | 3.3:+95651238 | MS.gene063105:intron |
| AGATCTTCCAAGGTTGAAGT+TGG | 0.438581 | 3.3:+95653126 | MS.gene063105:CDS |
| GCCTGGACCATTTGATCTTG+TGG | 0.445173 | 3.3:+95652812 | MS.gene063105:intron |
| TTCAATGGATGAATGGCTTC+AGG | 0.447599 | 3.3:+95653167 | MS.gene063105:CDS |
| GGGACCTTCCCTTCTGCCCC+AGG | 0.448790 | 3.3:+95651093 | MS.gene063105:CDS |
| TAAGACTACAGATGCTTCAA+TGG | 0.461758 | 3.3:+95653152 | MS.gene063105:CDS |
| AACATTGCATTACCTTAGAC+AGG | 0.473431 | 3.3:-95653007 | None:intergenic |
| ACCATTGAAGTTGTTGAGCC+TGG | 0.474828 | 3.3:+95652891 | MS.gene063105:CDS |
| GATCTTCCAAGGTTGAAGTT+GGG | 0.475146 | 3.3:+95653127 | MS.gene063105:CDS |
| TGCTGACAGAAAATATATAT+GGG | 0.475416 | 3.3:-95652672 | None:intergenic |
| CAGATGCTTCAATGGATGAA+TGG | 0.477366 | 3.3:+95653160 | MS.gene063105:CDS |
| TTATTTGATGTAGTGGTAAA+GGG | 0.480002 | 3.3:+95651239 | MS.gene063105:intron |
| TTGCACTTCTTATCCTACTT+GGG | 0.486809 | 3.3:+95652958 | MS.gene063105:CDS |
| GTGAATGACATCGGCATTGT+TGG | 0.490588 | 3.3:+95651036 | MS.gene063105:CDS |
| GATGAAGCTGTGGAGAATAC+TGG | 0.499870 | 3.3:+95651009 | MS.gene063105:CDS |
| CAGCGATGGTGTCAATTCCT+GGG | 0.503598 | 3.3:-95651110 | None:intergenic |
| GTGTCAATTCCTGGGGCAGA+AGG | 0.517036 | 3.3:-95651102 | None:intergenic |
| ATGGTGCCCACAAGATCAAA+TGG | 0.518920 | 3.3:-95652819 | None:intergenic |
| CAATTTCTACCTGAACAGTA+AGG | 0.525707 | 3.3:-95651481 | None:intergenic |
| GAAGAGGCAGAGCTACTTGT+CGG | 0.527005 | 3.3:+95651266 | MS.gene063105:CDS |
| AGTGGTAAAGGGTGGTGAAG+AGG | 0.534718 | 3.3:+95651250 | MS.gene063105:intron |
| ACCAGGCTCAACAACTTCAA+TGG | 0.539719 | 3.3:-95652892 | None:intergenic |
| CCCACAAGATCAAATGGTCC+AGG | 0.542064 | 3.3:-95652813 | None:intergenic |
| AAAGTAGCCTGAACTGAAGA+TGG | 0.549379 | 3.3:-95652649 | None:intergenic |
| ACAAGAAGACGATGATCGTA+TGG | 0.565759 | 3.3:-95651452 | None:intergenic |
| AATTCCTGGGGCAGAAGGGA+AGG | 0.572912 | 3.3:-95651097 | None:intergenic |
| GATGCTCAAGACTTTGCTGA+TGG | 0.576315 | 3.3:+95651072 | MS.gene063105:CDS |
| ATGCTCAAGACTTTGCTGAT+GGG | 0.587042 | 3.3:+95651073 | MS.gene063105:CDS |
| CATTAATCCATAGCCCAAGT+AGG | 0.597505 | 3.3:-95652971 | None:intergenic |
| AGCCTGAACTGAAGATGGCA+CGG | 0.612528 | 3.3:-95652644 | None:intergenic |
| TGTCAATTCCTGGGGCAGAA+GGG | 0.617861 | 3.3:-95651101 | None:intergenic |
| GAAGACGATGATCGTATGGA+AGG | 0.621122 | 3.3:-95651448 | None:intergenic |
| ATTCTTAGGGAACACAGCGA+TGG | 0.640325 | 3.3:-95651124 | None:intergenic |
| TTGGTCTATCTCGTATACAA+TGG | 0.646480 | 3.3:-95652838 | None:intergenic |
| GTGTCAGTCAGATGAAGCTG+TGG | 0.648091 | 3.3:+95650999 | MS.gene063105:CDS |
| TCCATACTGAATAAAACACC+AGG | 0.656320 | 3.3:-95652909 | None:intergenic |
| AGCGATGGTGTCAATTCCTG+GGG | 0.656423 | 3.3:-95651109 | None:intergenic |
| ACTGGTGAAGTGAATGACAT+CGG | 0.672577 | 3.3:+95651027 | MS.gene063105:CDS |
| TTTGATGTAGTGGTAAAGGG+TGG | 0.674392 | 3.3:+95651242 | MS.gene063105:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAATAGATTTAATT+TGG | - | chr3.3:95651519-95651538 | None:intergenic | 10.0% |
| !! | AAAATAAAAACTAAAGAAAC+AGG | + | chr3.3:95652107-95652126 | MS.gene063105:intron | 15.0% |
| !! | AAATAAAAACTAAAGAAACA+GGG | + | chr3.3:95652108-95652127 | MS.gene063105:intron | 15.0% |
| !!! | AATAGTATATTGATTATTAC+AGG | - | chr3.3:95651619-95651638 | None:intergenic | 15.0% |
| !! | AATAAAAACTAAAGAAACAG+GGG | + | chr3.3:95652109-95652128 | MS.gene063105:intron | 20.0% |
| !! | AGATCTTTCTATATAAGATA+AGG | + | chr3.3:95651161-95651180 | MS.gene063105:intron | 20.0% |
| !! | CAAACTTATAGTTAATATGT+TGG | + | chr3.3:95652444-95652463 | MS.gene063105:intron | 20.0% |
| !! | TTATACATGTGTGTTAAAAT+GGG | + | chr3.3:95652239-95652258 | MS.gene063105:intron | 20.0% |
| !! | TTGACAAATCAATAATGTAA+AGG | - | chr3.3:95653320-95653339 | None:intergenic | 20.0% |
| !!! | ACAATATATTCTTTTAAGAC+TGG | + | chr3.3:95651980-95651999 | MS.gene063105:intron | 20.0% |
| !!! | ACTAAAGTATTTGCTATATA+TGG | + | chr3.3:95651694-95651713 | MS.gene063105:intron | 20.0% |
| !!! | ATAGATTTAATTTGGAGATT+TGG | - | chr3.3:95651511-95651530 | None:intergenic | 20.0% |
| !!! | CAATATATTCTTTTAAGACT+GGG | + | chr3.3:95651981-95652000 | MS.gene063105:intron | 20.0% |
| !!! | CTAAAGTATTTGCTATATAT+GGG | + | chr3.3:95651695-95651714 | MS.gene063105:intron | 20.0% |
| !!! | CTTATTTTCTAATCAAATCA+AGG | + | chr3.3:95651787-95651806 | MS.gene063105:intron | 20.0% |
| !!! | GTAATACTTTTTTTTGTGTA+AGG | - | chr3.3:95652580-95652599 | None:intergenic | 20.0% |
| ! | AAAATTAACACAAGATTGTC+AGG | - | chr3.3:95651212-95651231 | None:intergenic | 25.0% |
| ! | AAATTAACACAAGATTGTCA+GGG | - | chr3.3:95651211-95651230 | None:intergenic | 25.0% |
| ! | ATACACAAATCAGTATGAAA+AGG | - | chr3.3:95653281-95653300 | None:intergenic | 25.0% |
| ! | ATGACAGTAAAATATCATCA+AGG | + | chr3.3:95652071-95652090 | MS.gene063105:intron | 25.0% |
| ! | CTTATACATGTGTGTTAAAA+TGG | + | chr3.3:95652238-95652257 | MS.gene063105:intron | 25.0% |
| ! | TACACAAATCAGTATGAAAA+GGG | - | chr3.3:95653280-95653299 | None:intergenic | 25.0% |
| ! | TACATTTCGCAATATTCTTA+GGG | - | chr3.3:95651140-95651159 | None:intergenic | 25.0% |
| ! | TACCAAAACACTTTCTATAA+TGG | + | chr3.3:95652867-95652886 | MS.gene063105:CDS | 25.0% |
| ! | TATAAGTTTGACAGAGTTAT+TGG | - | chr3.3:95652434-95652453 | None:intergenic | 25.0% |
| ! | TGACAGTAAAATATCATCAA+GGG | + | chr3.3:95652072-95652091 | MS.gene063105:intron | 25.0% |
| ! | TGCTGACAGAAAATATATAT+GGG | - | chr3.3:95652675-95652694 | None:intergenic | 25.0% |
| ! | TGTGCATATCTTTGTATAAA+TGG | - | chr3.3:95651963-95651982 | None:intergenic | 25.0% |
| ! | TGTTTCAATCAAAGTTATCA+TGG | - | chr3.3:95651567-95651586 | None:intergenic | 25.0% |
| ! | TTACATTTCGCAATATTCTT+AGG | - | chr3.3:95651141-95651160 | None:intergenic | 25.0% |
| ! | TTATTTGATGTAGTGGTAAA+GGG | + | chr3.3:95651239-95651258 | MS.gene063105:intron | 25.0% |
| ! | TTGCTGACAGAAAATATATA+TGG | - | chr3.3:95652676-95652695 | None:intergenic | 25.0% |
| ! | TTTATTTGATGTAGTGGTAA+AGG | + | chr3.3:95651238-95651257 | MS.gene063105:intron | 25.0% |
| ! | TTTGAATGTTGTTGCAATTA+AGG | + | chr3.3:95651415-95651434 | MS.gene063105:CDS | 25.0% |
| !!! | CATTTTAACACACATGTATA+AGG | - | chr3.3:95652240-95652259 | None:intergenic | 25.0% |
| !!! | TTAATCTCTGAAATGATTTG+TGG | + | chr3.3:95651643-95651662 | MS.gene063105:intron | 25.0% |
| !!! | TTATAGAAAGTGTTTTGGTA+TGG | - | chr3.3:95652867-95652886 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTATTTGATGTAG+TGG | + | chr3.3:95651232-95651251 | MS.gene063105:intron | 25.0% |
| AAATCTTCCATCCAAACATA+CGG | - | chr3.3:95651750-95651769 | None:intergenic | 30.0% | |
| AATAATACTCACGTGGTAAA+TGG | - | chr3.3:95653055-95653074 | None:intergenic | 30.0% | |
| AATTAACACAAGATTGTCAG+GGG | - | chr3.3:95651210-95651229 | None:intergenic | 30.0% | |
| AATTGCAACAACATTCAAAC+TGG | - | chr3.3:95651414-95651433 | None:intergenic | 30.0% | |
| ACACAAATCAGTATGAAAAG+GGG | - | chr3.3:95653279-95653298 | None:intergenic | 30.0% | |
| AGATCTATGTATGTACCAAA+TGG | - | chr3.3:95652372-95652391 | None:intergenic | 30.0% | |
| AGGCATGATAAATATAGAAG+GGG | - | chr3.3:95652770-95652789 | None:intergenic | 30.0% | |
| AGTACCATATAACATGGAAT+AGG | - | chr3.3:95652320-95652339 | None:intergenic | 30.0% | |
| ATAGATCTCTAAGTTCATCT+GGG | + | chr3.3:95652384-95652403 | MS.gene063105:intron | 30.0% | |
| ATATGCAAATAATACTCACG+TGG | - | chr3.3:95653062-95653081 | None:intergenic | 30.0% | |
| ATTCCCTATTCCATGTTATA+TGG | + | chr3.3:95652313-95652332 | MS.gene063105:intron | 30.0% | |
| CAGGCATGATAAATATAGAA+GGG | - | chr3.3:95652771-95652790 | None:intergenic | 30.0% | |
| GAAAACAAAAAGATCTTCCA+AGG | + | chr3.3:95653116-95653135 | MS.gene063105:intron | 30.0% | |
| GGAATCTGAATGAAATAAGA+GGG | - | chr3.3:95652298-95652317 | None:intergenic | 30.0% | |
| GGATATCAAAATACAAGGTT+AGG | - | chr3.3:95653352-95653371 | None:intergenic | 30.0% | |
| GTACCATATAACATGGAATA+GGG | - | chr3.3:95652319-95652338 | None:intergenic | 30.0% | |
| TAATTGCTTTACCGTATGTT+TGG | + | chr3.3:95651736-95651755 | MS.gene063105:intron | 30.0% | |
| TATAGCAAATACTTTAGTGC+AGG | - | chr3.3:95651692-95651711 | None:intergenic | 30.0% | |
| TATGTATGTACCAAATGGTT+GGG | - | chr3.3:95652367-95652386 | None:intergenic | 30.0% | |
| TCAAATACATAACCTGTCTA+AGG | + | chr3.3:95652995-95653014 | MS.gene063105:CDS | 30.0% | |
| TCAGGCATGATAAATATAGA+AGG | - | chr3.3:95652772-95652791 | None:intergenic | 30.0% | |
| TGTCACAAGACACAAATAAA+AGG | - | chr3.3:95651345-95651364 | None:intergenic | 30.0% | |
| TGTTGTATGGATCAATTTCA+GGG | + | chr3.3:95651384-95651403 | MS.gene063105:intron | 30.0% | |
| TTGTTGTATGGATCAATTTC+AGG | + | chr3.3:95651383-95651402 | MS.gene063105:intron | 30.0% | |
| ! | AATCAGAGTACCATATAACA+TGG | - | chr3.3:95652326-95652345 | None:intergenic | 30.0% |
| ! | AATGGAAGAGTATGTTCATA+TGG | - | chr3.3:95651945-95651964 | None:intergenic | 30.0% |
| ! | ATTTTGCAGGTTTTCAACAA+TGG | + | chr3.3:95652619-95652638 | MS.gene063105:intron | 30.0% |
| ! | GTGTTGTGTTATAATTTTGC+AGG | + | chr3.3:95652606-95652625 | MS.gene063105:intron | 30.0% |
| ! | TATGTTTGGATGGAAGATTT+TGG | + | chr3.3:95651750-95651769 | MS.gene063105:intron | 30.0% |
| ! | TCTGTTTTCCTTTTTACTCT+TGG | + | chr3.3:95652933-95652952 | MS.gene063105:CDS | 30.0% |
| !! | TAACACTCGATTTTGTTGTA+TGG | + | chr3.3:95651371-95651390 | MS.gene063105:intron | 30.0% |
| !!! | AACCTTGTATTTTGATATCC+AGG | + | chr3.3:95653352-95653371 | MS.gene063105:intron | 30.0% |
| !!! | ACCTTGTATTTTGATATCCA+GGG | + | chr3.3:95653353-95653372 | MS.gene063105:intron | 30.0% |
| !!! | TGCCATTATAGAAAGTGTTT+TGG | - | chr3.3:95652872-95652891 | None:intergenic | 30.0% |
| AACATTGCATTACCTTAGAC+AGG | - | chr3.3:95653010-95653029 | None:intergenic | 35.0% | |
| ACAAATCAGTATGAAAAGGG+GGG | - | chr3.3:95653277-95653296 | None:intergenic | 35.0% | |
| ACAACAAAATCGAGTGTTAG+AGG | - | chr3.3:95651370-95651389 | None:intergenic | 35.0% | |
| ATATTGACAAAGTATGCACC+AGG | + | chr3.3:95652047-95652066 | MS.gene063105:intron | 35.0% | |
| ATTGCACTTCTTATCCTACT+TGG | + | chr3.3:95652957-95652976 | MS.gene063105:CDS | 35.0% | |
| CAATTTCTACCTGAACAGTA+AGG | - | chr3.3:95651484-95651503 | None:intergenic | 35.0% | |
| CACAAATCAGTATGAAAAGG+GGG | - | chr3.3:95653278-95653297 | None:intergenic | 35.0% | |
| CATAGATCTCTAAGTTCATC+TGG | + | chr3.3:95652383-95652402 | MS.gene063105:intron | 35.0% | |
| CTATGTATGTACCAAATGGT+TGG | - | chr3.3:95652368-95652387 | None:intergenic | 35.0% | |
| CTTACTGTTCAGGTAGAAAT+TGG | + | chr3.3:95651482-95651501 | MS.gene063105:intron | 35.0% | |
| GGGAATCTGAATGAAATAAG+AGG | - | chr3.3:95652299-95652318 | None:intergenic | 35.0% | |
| GTGCAATTCCAAGAGTAAAA+AGG | - | chr3.3:95652944-95652963 | None:intergenic | 35.0% | |
| TAAGACTACAGATGCTTCAA+TGG | + | chr3.3:95653152-95653171 | MS.gene063105:CDS | 35.0% | |
| TAAGGATTGTTAGATGTACG+AGG | - | chr3.3:95652222-95652241 | None:intergenic | 35.0% | |
| TATTGACAAAGTATGCACCA+GGG | + | chr3.3:95652048-95652067 | MS.gene063105:intron | 35.0% | |
| TCCATACTGAATAAAACACC+AGG | - | chr3.3:95652912-95652931 | None:intergenic | 35.0% | |
| TCCCTGGATATCAAAATACA+AGG | - | chr3.3:95653357-95653376 | None:intergenic | 35.0% | |
| TCTGAATGAAATAAGAGGGA+AGG | - | chr3.3:95652294-95652313 | None:intergenic | 35.0% | |
| TGAATAGCAACTCAAGGAAT+TGG | - | chr3.3:95652158-95652177 | None:intergenic | 35.0% | |
| TGTGTGTTAAAATGGGTATG+AGG | + | chr3.3:95652246-95652265 | MS.gene063105:intron | 35.0% | |
| TGTTCAAAACCTTACTGTTC+AGG | + | chr3.3:95651472-95651491 | MS.gene063105:CDS | 35.0% | |
| TTGCACTTCTTATCCTACTT+GGG | + | chr3.3:95652958-95652977 | MS.gene063105:CDS | 35.0% | |
| TTGGATGAATTAGTCGATTG+TGG | + | chr3.3:95652491-95652510 | MS.gene063105:intron | 35.0% | |
| TTGGTCTATCTCGTATACAA+TGG | - | chr3.3:95652841-95652860 | None:intergenic | 35.0% | |
| ! | AGTTGCTATTCACCATCTAT+GGG | + | chr3.3:95652166-95652185 | MS.gene063105:intron | 35.0% |
| ! | GAAGAGTATGTTCATATGGA+GGG | - | chr3.3:95651941-95651960 | None:intergenic | 35.0% |
| ! | TGATATTTTACTGTCATCCC+TGG | - | chr3.3:95652068-95652087 | None:intergenic | 35.0% |
| !! | CTTGCTTTTGCTAGTTCTTT+TGG | + | chr3.3:95652472-95652491 | MS.gene063105:intron | 35.0% |
| !!! | AAGTGTTTTGGTATGGATGT+TGG | - | chr3.3:95652860-95652879 | None:intergenic | 35.0% |
| !!! | CAAGGTTTTGCTGTTTTAGT+AGG | + | chr3.3:95652014-95652033 | MS.gene063105:intron | 35.0% |
| AAAGTAGCCTGAACTGAAGA+TGG | - | chr3.3:95652652-95652671 | None:intergenic | 40.0% | |
| ACAAGAAGACGATGATCGTA+TGG | - | chr3.3:95651455-95651474 | None:intergenic | 40.0% | |
| ACTGGTGAAGTGAATGACAT+CGG | + | chr3.3:95651027-95651046 | MS.gene063105:CDS | 40.0% | |
| AGATCTTCCAAGGTTGAAGT+TGG | + | chr3.3:95653126-95653145 | MS.gene063105:CDS | 40.0% | |
| AGATGGTGAATAGCAACTCA+AGG | - | chr3.3:95652164-95652183 | None:intergenic | 40.0% | |
| ATGCTCAAGACTTTGCTGAT+GGG | + | chr3.3:95651073-95651092 | MS.gene063105:CDS | 40.0% | |
| ATGCTTCAAATGTCTGCATG+AGG | + | chr3.3:95652732-95652751 | MS.gene063105:intron | 40.0% | |
| CACAGCAAAAGAAAATGGTC+AGG | - | chr3.3:95652790-95652809 | None:intergenic | 40.0% | |
| CAGATGCTTCAATGGATGAA+TGG | + | chr3.3:95653160-95653179 | MS.gene063105:CDS | 40.0% | |
| CATTAATCCATAGCCCAAGT+AGG | - | chr3.3:95652974-95652993 | None:intergenic | 40.0% | |
| GATCTTCCAAGGTTGAAGTT+GGG | + | chr3.3:95653127-95653146 | MS.gene063105:CDS | 40.0% | |
| GGAGAGCTAAGTTCATATCA+TGG | - | chr3.3:95651914-95651933 | None:intergenic | 40.0% | |
| TATGTTCATATGGAGGGTTC+TGG | - | chr3.3:95651935-95651954 | None:intergenic | 40.0% | |
| TGCTTTACCGTATGTTTGGA+TGG | + | chr3.3:95651740-95651759 | MS.gene063105:intron | 40.0% | |
| TGTTCTTCTTGCTAGTTGCT+AGG | + | chr3.3:95650977-95650996 | MS.gene063105:CDS | 40.0% | |
| TTCAATGGATGAATGGCTTC+AGG | + | chr3.3:95653167-95653186 | MS.gene063105:CDS | 40.0% | |
| TTCTTATCCTACTTGGGCTA+TGG | + | chr3.3:95652964-95652983 | MS.gene063105:CDS | 40.0% | |
| TTTGATGTAGTGGTAAAGGG+TGG | + | chr3.3:95651242-95651261 | MS.gene063105:intron | 40.0% | |
| ! | CTACTTGGGCTATGGATTAA+TGG | + | chr3.3:95652972-95652991 | MS.gene063105:CDS | 40.0% |
| ! | GAGTTGCTATTCACCATCTA+TGG | + | chr3.3:95652165-95652184 | MS.gene063105:intron | 40.0% |
| ! | GGAAGAGTATGTTCATATGG+AGG | - | chr3.3:95651942-95651961 | None:intergenic | 40.0% |
| ! | GTTTGGATGGAAGATTTTGG+AGG | + | chr3.3:95651753-95651772 | MS.gene063105:intron | 40.0% |
| !! | CATCAGCTCTGGAAAAAGTA+AGG | - | chr3.3:95652715-95652734 | None:intergenic | 40.0% |
| !! | GCCTGGTGTTTTATTCAGTA+TGG | + | chr3.3:95652908-95652927 | MS.gene063105:CDS | 40.0% |
| AAACATCCTGTGCCCATAGA+TGG | - | chr3.3:95652181-95652200 | None:intergenic | 45.0% | |
| AACTTTGAATGCAGCAGGGT+TGG | + | chr3.3:95652132-95652151 | MS.gene063105:intron | 45.0% | |
| ACCAGGCTCAACAACTTCAA+TGG | - | chr3.3:95652895-95652914 | None:intergenic | 45.0% | |
| ACCATTGAAGTTGTTGAGCC+TGG | + | chr3.3:95652891-95652910 | MS.gene063105:CDS | 45.0% | |
| ACTGAGTATATGCAGTTCCC+TGG | - | chr3.3:95653373-95653392 | None:intergenic | 45.0% | |
| ATGGTGCCCACAAGATCAAA+TGG | - | chr3.3:95652822-95652841 | None:intergenic | 45.0% | |
| ATTCTTAGGGAACACAGCGA+TGG | - | chr3.3:95651127-95651146 | None:intergenic | 45.0% | |
| CCTGGACCATTTGATCTTGT+GGG | + | chr3.3:95652813-95652832 | MS.gene063105:CDS | 45.0% | |
| CTTAGTCCCAACTTCAACCT+TGG | - | chr3.3:95653136-95653155 | None:intergenic | 45.0% | |
| CTTGTCGGTCTGAAAAACGA+TGG | + | chr3.3:95651281-95651300 | MS.gene063105:CDS | 45.0% | |
| GAAGACGATGATCGTATGGA+AGG | - | chr3.3:95651451-95651470 | None:intergenic | 45.0% | |
| GATGAAGCTGTGGAGAATAC+TGG | + | chr3.3:95651009-95651028 | MS.gene063105:CDS | 45.0% | |
| GATGCTCAAGACTTTGCTGA+TGG | + | chr3.3:95651072-95651091 | MS.gene063105:CDS | 45.0% | |
| GGCTGCACAGCAAAAGAAAA+TGG | - | chr3.3:95652795-95652814 | None:intergenic | 45.0% | |
| GGGTATGAGGATGATTCTCT+TGG | + | chr3.3:95652259-95652278 | MS.gene063105:intron | 45.0% | |
| GTGAATGACATCGGCATTGT+TGG | + | chr3.3:95651036-95651055 | MS.gene063105:CDS | 45.0% | |
| TATTCACCATCTATGGGCAC+AGG | + | chr3.3:95652172-95652191 | MS.gene063105:intron | 45.0% | |
| TTCGATGATGCCCAACCATT+TGG | + | chr3.3:95652354-95652373 | MS.gene063105:intron | 45.0% | |
| TTCTGTCAGCAAGTTCTTGC+AGG | + | chr3.3:95652684-95652703 | MS.gene063105:CDS | 45.0% | |
| ! | GACATTTGAAGCATCAGCTC+TGG | - | chr3.3:95652726-95652745 | None:intergenic | 45.0% |
| !! | AAGATTTTGGAGGAGAGAGG+AGG | + | chr3.3:95651763-95651782 | MS.gene063105:intron | 45.0% |
| !! | TGGAAGATTTTGGAGGAGAG+AGG | + | chr3.3:95651760-95651779 | MS.gene063105:intron | 45.0% |
| !! | TTTTCTTTTGCTGTGCAGCC+TGG | + | chr3.3:95652795-95652814 | MS.gene063105:intron | 45.0% |
| AGACTGGGTTTCAGAGCACA+AGG | + | chr3.3:95651996-95652015 | MS.gene063105:intron | 50.0% | |
| AGCCTGAACTGAAGATGGCA+CGG | - | chr3.3:95652647-95652666 | None:intergenic | 50.0% | |
| AGGGGAACTTTGAATGCAGC+AGG | + | chr3.3:95652127-95652146 | MS.gene063105:intron | 50.0% | |
| AGTGGTAAAGGGTGGTGAAG+AGG | + | chr3.3:95651250-95651269 | MS.gene063105:intron | 50.0% | |
| CCCACAAGATCAAATGGTCC+AGG | - | chr3.3:95652816-95652835 | None:intergenic | 50.0% | |
| GAAGAGGCAGAGCTACTTGT+CGG | + | chr3.3:95651266-95651285 | MS.gene063105:CDS | 50.0% | |
| GCCTGGACCATTTGATCTTG+TGG | + | chr3.3:95652812-95652831 | MS.gene063105:intron | 50.0% | |
| GGGGAACTTTGAATGCAGCA+GGG | + | chr3.3:95652128-95652147 | MS.gene063105:intron | 50.0% | |
| GTGTCAGTCAGATGAAGCTG+TGG | + | chr3.3:95650999-95651018 | MS.gene063105:CDS | 50.0% | |
| TGTCAATTCCTGGGGCAGAA+GGG | - | chr3.3:95651104-95651123 | None:intergenic | 50.0% | |
| ! | ACAGCGATGGTGTCAATTCC+TGG | - | chr3.3:95651114-95651133 | None:intergenic | 50.0% |
| ! | AGCGATGGTGTCAATTCCTG+GGG | - | chr3.3:95651112-95651131 | None:intergenic | 50.0% |
| ! | CAGCGATGGTGTCAATTCCT+GGG | - | chr3.3:95651113-95651132 | None:intergenic | 50.0% |
| AATTCCTGGGGCAGAAGGGA+AGG | - | chr3.3:95651100-95651119 | None:intergenic | 55.0% | |
| CTCCGTGCCATCTTCAGTTC+AGG | + | chr3.3:95652642-95652661 | MS.gene063105:CDS | 55.0% | |
| GTGTCAATTCCTGGGGCAGA+AGG | - | chr3.3:95651105-95651124 | None:intergenic | 55.0% | |
| GGGACCTTCCCTTCTGCCCC+AGG | + | chr3.3:95651093-95651112 | MS.gene063105:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95650967 | 95653421 | 95650967 | ID=MS.gene063105 |
| chr3.3 | mRNA | 95650967 | 95653421 | 95650967 | ID=MS.gene063105.t1;Parent=MS.gene063105 |
| chr3.3 | exon | 95650967 | 95651156 | 95650967 | ID=MS.gene063105.t1.exon1;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95650967 | 95651156 | 95650967 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95651252 | 95651302 | 95651252 | ID=MS.gene063105.t1.exon2;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95651252 | 95651302 | 95651252 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95651405 | 95651493 | 95651405 | ID=MS.gene063105.t1.exon3;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95651405 | 95651493 | 95651405 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95652628 | 95652705 | 95652628 | ID=MS.gene063105.t1.exon4;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95652628 | 95652705 | 95652628 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95652813 | 95653016 | 95652813 | ID=MS.gene063105.t1.exon5;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95652813 | 95653016 | 95652813 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95653117 | 95653188 | 95653117 | ID=MS.gene063105.t1.exon6;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95653117 | 95653188 | 95653117 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| chr3.3 | exon | 95653374 | 95653421 | 95653374 | ID=MS.gene063105.t1.exon7;Parent=MS.gene063105.t1 |
| chr3.3 | CDS | 95653374 | 95653421 | 95653374 | ID=cds.MS.gene063105.t1;Parent=MS.gene063105.t1 |
| Gene Sequence |
| Protein sequence |
